Diff of the two buildlogs: -- --- b1/build.log 2025-10-22 09:02:50.679543197 +0000 +++ b2/build.log 2025-10-22 09:14:00.261463715 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 24 03:17:28 -12 2026 -I: pbuilder-time-stamp: 1795533448 +I: Current time: Wed Oct 22 23:02:54 +14 2025 +I: pbuilder-time-stamp: 1761123774 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying use_system_gzstream.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3173376/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 22 09:03 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b090067caab94175bad7580bb5d81c70' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3173376' - PS1='# ' - PS2='> ' + INVOCATION_ID=a9da7eb38a04494f8122faa3fee9e736 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=147649 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.id7XLbWW/pbuilderrc_U2Cg --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.id7XLbWW/b1 --logfile b1/build.log mmseqs2_18-8cc5c+ds-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.id7XLbWW/pbuilderrc_feI4 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.id7XLbWW/b2 --logfile b2/build.log mmseqs2_18-8cc5c+ds-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3173376/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -194,7 +226,7 @@ Get: 67 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 68 http://deb.debian.org/debian forky/main amd64 libzstd-dev amd64 1.5.7+dfsg-2 [375 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 33.7 MB in 2s (14.0 MB/s) +Fetched 33.7 MB in 1s (26.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -485,7 +517,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mmseqs2_18-8cc5c+ds-1_source.changes +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mmseqs2_18-8cc5c+ds-1_source.changes dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 18-8cc5c+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -547,8 +583,8 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (4.4s) --- Generating done (0.1s) +-- Configuring done (3.5s) +-- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: @@ -601,7 +637,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.2s) +-- Configuring done (4.2s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -655,7 +691,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.9s) +-- Configuring done (3.8s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -709,7 +745,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.6s) +-- Configuring done (3.5s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -763,7 +799,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (2.8s) +-- Configuring done (4.9s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -819,7 +855,7 @@ -- Performing Test HAVE_BZLIB_CHECK - Success -- BZLIB works -- Found OpenMP --- Configuring done (3.3s) +-- Configuring done (3.4s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -840,7 +876,7 @@ make[1]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds' mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/debian/mmseqs2/usr/bin dh_auto_build --builddirectory build_avx2 && dh_auto_build --builddirectory build_avx && dh_auto_build --builddirectory build_sse4.1 && dh_auto_build --builddirectory build_ssse3 && dh_auto_build --builddirectory build_sse3 && true - cd build_avx2 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/CMakeFiles /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2//CMakeFiles/progress.marks @@ -849,123 +885,101 @@ make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/depend make -f lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/depend make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend -make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tantan /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tantan/CMakeFiles/tantan.dir/DependInfo.cmake "--color=" -make 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake "--color=" +make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/data /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/data 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -MF CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o.d -o CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2/ksw2_extz2_sse.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML80.out.h -[ 4%] Generating ../generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 4%] Generating ../generated/VTML80.out.h [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src/version && /usr/bin/c++ -DGIT_SHA1=18-8cc5c+ds-1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/version/Version.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML80.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h.tmp +[ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -[ 6%] Generating ../generated/PAM30.out.h -[ 7%] Linking CXX static library libversion.a -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +[ 5%] Generating ../generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML40.out cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/VTML40.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' -[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -[ 7%] Built target version -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp +[ 5%] Generating ../generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out +[ 5%] Generating ../generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h +[ 5%] Built target version +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide.out.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ @@ -991,6 +1005,7 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:446:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 446 | ret->value = NAN; @@ -1000,255 +1015,276 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h -[ 8%] Linking C static library libmicrotar.a +[ 6%] Linking C static library libmicrotar.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' -[ 8%] Built target microtar -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 9%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +[ 6%] Built target microtar +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/PAM30.out.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiag.lib.h +[ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 8%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -[ 10%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp +[ 9%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/ExpOpt3_8_polished.cs32.lib.h -[ 10%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 9%] Generating ../generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/libPolished_8.lib.h.tmp -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/libPolished_8.lib.h +[ 10%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/Library255_may17.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/Library255_may17.lib.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a [ 10%] Generating ../generated/cs219.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cs219.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h -[ 11%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 12%] Generating ../generated/krona_prelude.html.h +[ 10%] Built target tinyexpr +[ 11%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h [ 13%] Generating ../generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -[ 13%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h +[ 13%] Built target ksw2 +[ 13%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/result_viz_prelude.html.zst.h -[ 13%] Built target tinyexpr -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h.tmp [ 13%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh -[ 13%] Generating ../generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h +[ 13%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -[ 13%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h +[ 13%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h [ 14%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -[ 15%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easytaxonomy.sh.h +[ 15%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h -[ 15%] Generating ../generated/map.sh.h [ 15%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h.tmp +[ 15%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h.tmp [ 16%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h.tmp [ 16%] Generating ../generated/linclust.sh.h -[ 16%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -[ 17%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h.tmp +[ 16%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh +[ 17%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linclust.sh.h [ 18%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h [ 19%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h [ 20%] Generating ../generated/createindex.sh.h -[ 20%] Generating ../generated/createtaxdb.sh.h -[ 20%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h +[ 20%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h -[ 21%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh +[ 20%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchtargetprofile.sh.h +[ 21%] Linking CXX static library libtantan.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +[ 22%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h -[ 22%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h.tmp [ 22%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h -[ 22%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h.tmp [ 23%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh +[ 24%] Generating ../generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h +/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o +/usr/bin/ranlib libtantan.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/translated_search.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h +[ 24%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxpercontig.sh.h +[ 24%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h.tmp -[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitdb.sh.h +[ 25%] Generating ../generated/linsearch.sh.h +[ 25%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -[ 23%] Generating ../generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h +[ 25%] Built target tantan cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h -[ 25%] Built target ksw2 -[ 26%] Generating ../generated/nucleotide_clustering.sh.h -[ 25%] Generating ../generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp [ 26%] Generating ../generated/databases.sh.h -[ 26%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/taxonomy.sh.h [ 26%] Generating ../generated/iterativepp.sh.h [ 26%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/pickconsensusrep.sh.h +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/databases.sh.h -[ 27%] Linking CXX static library libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 -/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o -/usr/bin/ranlib libtantan.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' -[ 27%] Built target tantan +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/nucleotide_clustering.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' [ 27%] Built target alp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated/K4000.crf.h.tmp @@ -1262,36 +1298,36 @@ make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' [ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/Alignment.cpp +[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib 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src/CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/rescorediagonal.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/Fwbw.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated 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CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/Main.cpp +[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/Clustering.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/ClusteringAlgorithms.cpp +[ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CSProfile.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/A3MReader.cpp @@ -1304,9 +1340,9 @@ [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CommandCaller.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBConcat.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBReader.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBConcat.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBWriter.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o @@ -1321,9 +1357,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/HeaderSummarizer.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/KSeqWrapper.cpp -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o -[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LambdaCalculation.cpp.o +[ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LambdaCalculation.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/LambdaCalculation.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/LambdaCalculation.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/LambdaCalculation.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/LambdaCalculation.cpp +[ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Masker.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Masker.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/MemoryMapped.cpp @@ -1347,18 +1383,18 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Sequence.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/SequenceWeights.cpp -[ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/UniprotKB.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/SubstitutionMatrix.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/UniprotKB.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Util.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/Indexer.cpp -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/CacheFriendlyOperations.cpp +[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/Indexer.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/IndexBuilder.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o @@ -1419,10 +1455,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust/LinsearchIndexReader.cpp [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/alignall.cpp -[ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/alignbykmer.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/appenddbtoindex.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/alignbykmer.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/apply.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/calculatelambda.cpp.o @@ -1445,14 +1481,14 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/convertprofiledb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/createdb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/dbtype.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/db2tar.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/dbtype.cpp +[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/offsetalignment.cpp -[ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/createseqfiledb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o @@ -1463,10 +1499,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/createtsv.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/diffseqdbs.cpp -[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractalignedregion.cpp +[ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractdomains.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o @@ -1477,11 +1513,11 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/touchdb.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filtera3m.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filterdb.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { | ^~~~~~~~~~~~~~~~~~~~~ -[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filterdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gpuserver.cpp.o @@ -1554,12 +1590,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/sequence2profile.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/setextendeddbtype.cpp -[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/sortresult.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/splitdb.cpp In file included from /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Matcher::result_t; _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -1715,6 +1745,12 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:345:81: note: ‘’ declared here 345 | compatible.resize(resultPerId.size(), Matcher::result_t()); | ^ +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/setextendeddbtype.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/sortresult.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/splitdb.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o @@ -1724,12 +1760,12 @@ [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizeheaders.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizeresult.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizetabs.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/swapresults.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/translatenucs.cpp @@ -1754,9 +1790,9 @@ [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/ClusterUpdate.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Databases.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Linclust.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Databases.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasySearch.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o @@ -1777,9 +1813,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Taxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust 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-DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/CreateIndex.cpp @@ -1808,7 +1844,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' - cd build_avx && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/CMakeFiles /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx//CMakeFiles/progress.marks @@ -1819,168 +1855,117 @@ make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/depend make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend -make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend 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lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/build -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build +make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build +make -f lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/build +make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -[ 0%] Generating ../generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML40.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +[ 0%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o +[ 0%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o +[ 1%] Generating ../generated/VTML80.out.h +[ 1%] Generating ../generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/version/Version.cpp [ 0%] Building CXX object lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o -[ 2%] Generating ../generated/VTML80.out.h -[ 2%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h -[ 4%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -[ 2%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -[ 2%] Generating ../generated/PAM30.out.h -[ 2%] Generating ../generated/libPolished_8.lib.h -[ 4%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -[ 4%] Generating ../generated/Library255_may17.lib.h -[ 2%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 2%] Generating ../generated/nucleotide.out.h -[ 2%] Generating ../generated/blosum62.out.h -[ 2%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML80.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/microtar && /usr/bin/cc -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -g -O2 -Werror=implicit-function-declaration 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directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/ksw2 && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML80.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl libPolished_8.lib > 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/usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogprob.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogprob.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML80.out.h +[ 4%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide.out.h -[ 5%] Generating ../generated/cs219.lib.h -[ 5%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cs219.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h > 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp -[ 8%] Generating ../generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstat.cpp +[ 5%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h +[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +[ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/PAM30.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h -[ 9%] Built target version -[ 9%] Generating ../generated/K4000.crf.h -[ 9%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +[ 6%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/K4000.crf.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp -[ 10%] Generating ../generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh +[ 6%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +[ 6%] Built target version +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -1992,7 +1977,6 @@ | ^~~~~~~~~~~~ In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:366:19: -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:93:15: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 93 | ret->type = type; | ~~~~~~~~~~^~~~~~ @@ -2017,206 +2001,258 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h -[ 10%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -[ 10%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h.tmp -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp +[ 7%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h +[ 7%] Generating ../generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true libPolished_8.lib +[ 7%] Generating ../generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cs219.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated /usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o /usr/bin/ranlib libmicrotar.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -[ 10%] Built target microtar -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/libPolished_8.lib.h +[ 8%] Built target microtar +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h.tmp +[ 8%] Generating ../generated/result_viz_prelude.html.zst.h +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h.tmp +[ 8%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/K4000.crf.h +[ 8%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/krona_prelude.html.h -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp -[ 12%] Linking C static library libtinyexpr.a +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easysearch.sh.h +[ 10%] Linking C static library libtinyexpr.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 10%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easycluster.sh.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o /usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/ranlib libtinyexpr.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp -[ 13%] Built target tinyexpr -[ 14%] Generating ../generated/easyrbh.sh.h +[ 12%] Built target tinyexpr +[ 12%] Generating ../generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easytaxonomy.sh.h +[ 13%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easyrbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/easyrbh.sh.h -[ 15%] Generating ../generated/blastp.sh.h +[ 14%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h -[ 15%] Generating ../generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h.tmp +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp +[ 14%] Built target ksw2 +[ 14%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h -[ 15%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h.tmp +[ 14%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/map.sh.h -[ 16%] Generating ../generated/rbh.sh.h +[ 15%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h +[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h [ 16%] Generating ../generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h [ 16%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h [ 17%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h.tmp +[ 18%] Linking CXX static library libtantan.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh -[ 18%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 +[ 19%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -[ 19%] Generating ../generated/searchtargetprofile.sh.h -[ 20%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o +/usr/bin/ranlib libtantan.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h.tmp +[ 20%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h -[ 20%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh +[ 21%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh +[ 21%] Built target tantan +[ 21%] Generating ../generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h -[ 20%] Generating ../generated/translated_search.sh.h -[ 21%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h +[ 21%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh [ 22%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated [ 22%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +[ 23%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h -[ 23%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitdb.sh.h -[ 23%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h.tmp +[ 24%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h.tmp +[ 24%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastn.sh.h -[ 23%] Generating ../generated/taxonomy.sh.h -[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +[ 24%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h -[ 24%] Generating ../generated/linsearch.sh.h +[ 24%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +[ 25%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastn.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h.tmp +[ 26%] Generating ../generated/databases.sh.h +[ 26%] Generating ../generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linsearch.sh.h.tmp -[ 25%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/databases.sh.h -[ 25%] Generating ../generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h -[ 26%] Generating ../generated/nucleotide_clustering.sh.h +[ 27%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h +[ 27%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -[ 26%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -[ 26%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/tsv2exprofiledb.sh.h +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/iterativepp.sh.h -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -[ 26%] Built target ksw2 -[ 27%] Linking CXX static library libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 -/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o -/usr/bin/ranlib libtantan.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -[ 27%] Built target tantan make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' [ 27%] Built target alp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated/K4000.crf.h.tmp @@ -2229,38 +2265,38 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/Matcher.cpp +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/MsaFilter.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/MultipleAlignment.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/PSSMCalculator.cpp +[ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CSProfile.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/A3MReader.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o @@ -2319,10 +2355,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/UniprotKB.cpp +[ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Util.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/CacheFriendlyOperations.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Util.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o @@ -2437,6 +2473,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractalignedregion.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractdomains.cpp +/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractorfs.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o @@ -2445,9 +2484,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/touchdb.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filtera3m.cpp -/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filterdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o @@ -2460,10 +2496,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/makepaddedseqdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/makepaddedseqdb.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/masksequence.cpp -[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/mergeclusters.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/maskbygff.cpp +[ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/mergeresultsbyset.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o @@ -2496,10 +2532,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2msa.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2rbh.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] 65 | dbKeyBuffer.size(); @@ -2510,28 +2542,16 @@ /usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here 1163 | size() const _GLIBCXX_NOEXCEPT | ^~~~ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2rbh.cpp +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/splitsequence.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/subtractdbs.cpp In file included from /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Matcher::result_t; _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -2687,6 +2707,22 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:345:81: note: ‘’ declared here 345 | compatible.resize(resultPerId.size(), Matcher::result_t()); | ^ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/cpmvrmlndb.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractframes.cpp +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/sequence2profile.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/setextendeddbtype.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 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-DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/splitdb.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/splitsequence.cpp +[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/subtractdbs.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o @@ -2748,8 +2784,8 @@ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/PickConsensusRep.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasyTaxonomy.cpp +[ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/CreateIndex.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/MMseqsBase.cpp @@ -2776,7 +2812,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' - cd build_sse4.1 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_sse4.1 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/CMakeFiles /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1//CMakeFiles/progress.marks @@ -2788,146 +2824,107 @@ make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan 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-Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML80.out.h -[ 6%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h.tmp +[ 4%] Linking CXX static library libversion.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -[ 6%] Generating ../generated/nucleotide.out.h -[ 6%] Generating ../generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out -[ 6%] Generating ../generated/PAM30.out.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp +[ 5%] Generating ../generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blosum62.out.h /usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/ranlib libversion.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide.out.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o [ 6%] Built target version +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blosum62.out.h.tmp +[ 6%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blosum62.out.h -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp -[ 7%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -[ 7%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -[ 8%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp -[ 8%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' -[ 10%] Generating ../generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; | ^~ -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated In function ‘new_expr’, inlined from ‘base’ at /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:372:19: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ @@ -2959,232 +2956,271 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 10%] Built target microtar +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/PAM30.out.h +[ 6%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +[ 6%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp +/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o +/usr/bin/ranlib libmicrotar.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiag.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' +[ 6%] Built target ksw2 +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o -MF CMakeFiles/alp.dir/sls_alp_regression.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_regression.cpp +[ 7%] Built target microtar +[ 8%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib +[ 8%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 9%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/ExpOpt3_8_polished.cs32.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +[ 10%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h -[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h [ 10%] Generating ../generated/libPolished_8.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true libPolished_8.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h [ 10%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cs219.lib +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/Library255_may17.lib.h +[ 11%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h -[ 11%] Generating ../generated/krona_prelude.html.h -[ 11%] Generating ../generated/result_viz_prelude.html.zst.h +[ 12%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +[ 12%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h -[ 11%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/K4000.crf.h -[ 12%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cs219.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +[ 13%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h -[ 12%] Built target tinyexpr -[ 12%] Generating ../generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/K4000.crf.h +[ 13%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh -[ 12%] Generating ../generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +[ 14%] Linking CXX static library libtantan.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake +[ 14%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h -[ 12%] Generating ../generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h.tmp +[ 14%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp -[ 13%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh -[ 14%] Generating ../generated/easyrbh.sh.h +[ 15%] Generating ../generated/easyrbh.sh.h +[ 16%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h -[ 14%] Generating ../generated/map.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/krona_prelude.html.h -[ 14%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h +/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o +/usr/bin/ranlib libtantan.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h +[ 16%] Generating ../generated/blastpgp.sh.h +[ 16%] Built target tantan +[ 16%] Generating ../generated/map.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easytaxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/easyrbh.sh.h -[ 15%] Generating ../generated/rbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h -[ 15%] Built target ksw2 -[ 16%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h +[ 17%] Generating ../generated/rbh.sh.h +[ 17%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +[ 17%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h +[ 18%] Generating ../generated/update_clustering.sh.h +[ 19%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h -[ 16%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -[ 16%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastpgp.sh.h -[ 17%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh -[ 18%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h -[ 19%] Generating ../generated/searchtargetprofile.sh.h +[ 20%] Generating ../generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h.tmp -[ 20%] Generating ../generated/createindex.sh.h +[ 21%] Generating ../generated/createindex.sh.h +[ 21%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -[ 20%] Generating ../generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -[ 20%] Generating ../generated/translated_search.sh.h -[ 21%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h.tmp -[ 22%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h.tmp +[ 21%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createindex.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h -[ 22%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp +[ 22%] Generating ../generated/taxpercontig.sh.h +[ 23%] Generating ../generated/multihitdb.sh.h +[ 23%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h -[ 23%] Generating ../generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h.tmp +[ 24%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h -[ 23%] Generating ../generated/blastn.sh.h +[ 24%] Generating ../generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h -[ 23%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh -[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h +[ 24%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h.tmp +[ 24%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/blastn.sh.h -[ 24%] Generating ../generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h +[ 25%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h -[ 25%] Generating ../generated/databases.sh.h +[ 26%] Generating ../generated/databases.sh.h +[ 26%] Generating ../generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +[ 27%] Generating ../generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linsearch.sh.h.tmp -[ 26%] Generating ../generated/nucleotide_clustering.sh.h -[ 26%] Generating ../generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/linsearch.sh.h -[ 26%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h.tmp +[ 27%] Generating ../generated/iterativepp.sh.h +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h -[ 26%] Generating ../generated/tsv2exprofiledb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/databases.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/iterativepp.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/iterativepp.sh.h -[ 27%] Linking CXX static library libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 -/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o -/usr/bin/ranlib libtantan.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' -[ 27%] Built target tantan +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/tsv2exprofiledb.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' [ 27%] Built target alp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated/K4000.crf.h.tmp @@ -3197,36 +3233,36 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr 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src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CSProfile.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o @@ -3343,9 +3379,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy/createbintaxonomy.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createbintaxmapping.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -MF CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy/taxonomyreport.cpp +[ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust/kmermatcher.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust/kmerindexdb.cpp @@ -3381,10 +3417,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/convertprofiledb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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-c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/createdb.cpp +[ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/db2tar.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/dbtype.cpp -[ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/db2tar.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/db2tar.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/indexdb.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o @@ -3407,11 +3443,11 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractdomains.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractorfs.cpp -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/orftocontig.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { | ^~~~~~~~~~~~~~~~~~~~~ +[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/orftocontig.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/touchdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o @@ -3466,10 +3502,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2msa.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2repseq.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] 65 | dbKeyBuffer.size(); @@ -3480,32 +3512,14 @@ /usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here 1163 | size() const _GLIBCXX_NOEXCEPT | ^~~~ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) 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src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizetabs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o @@ -3670,13 +3706,13 @@ [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/translatenucs.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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-fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/translateaa.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan 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-O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/tsv2db.cpp -[ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons 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src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o @@ -3713,10 +3749,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Search.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasyTaxonomy.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/PickConsensusRep.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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'/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' - cd build_ssse3 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_ssse3 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/CMakeFiles /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3//CMakeFiles/progress.marks @@ -3756,167 +3792,109 @@ make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/depend make -f 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ExpOpt3_8_polished.cs32.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_random.cpp +[ 2%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out +[ 2%] Generating ../generated/blosum62.out.h +[ 2%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/microtar && /usr/bin/cc 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/usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o -MF CMakeFiles/tantan.dir/tantan.cpp.o.d -o CMakeFiles/tantan.dir/tantan.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan/tantan.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide.out.h -[ 4%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o -cd 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -MD -MT src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/version/Version.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML80.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blosum62.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -[ 5%] Generating ../generated/Library255_may17.lib.h -[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstat.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -[ 6%] Generating ../generated/libPolished_8.lib.h -[ 7%] Linking CXX static library libversion.a -[ 7%] Generating ../generated/cs219.lib.h -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blosum62.out.h +[ 3%] Linking CXX static library libversion.a +[ 3%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_random.cpp.o -MF CMakeFiles/alp.dir/njn_random.cpp.o.d -o CMakeFiles/alp.dir/njn_random.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_random.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstat.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstat.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/libPolished_8.lib.h.tmp -[ 8%] Generating ../generated/result_viz_prelude.html.zst.h -[ 8%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/libPolished_8.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' -[ 8%] Generating ../generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -[ 8%] Built target version -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/K4000.crf.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/Library255_may17.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/Library255_may17.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp -[ 9%] Generating ../generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -[ 9%] Generating ../generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/ExpOpt3_8_polished.cs32.lib.h /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -3952,207 +3930,265 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 9%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatmatrix.cpp +[ 7%] Generating ../generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p 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cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' [ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cs219.lib.h +[ 12%] Generating ../generated/result_viz_prelude.html.zst.h +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/result_viz_prelude.html.zst.h +[ 12%] Generating ../generated/easysearch.sh.h +[ 12%] Generating ../generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/K4000.crf.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easysearch.sh.h +[ 13%] Linking CXX static library libtantan.a +[ 13%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easycluster.sh.h +[ 14%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +[ 14%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easytaxonomy.sh.h -[ 10%] Built target microtar cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp +/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o +/usr/bin/ranlib libtantan.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easytaxonomy.sh.h -[ 11%] Generating ../generated/easyrbh.sh.h +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' +[ 15%] Generating ../generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh -[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +[ 16%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp -[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp -[ 13%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -[ 14%] Generating ../generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +[ 16%] Built target tantan cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/easyrbh.sh.h +[ 16%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h -[ 14%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -[ 14%] Built target tinyexpr cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastpgp.sh.h -[ 14%] Generating ../generated/map.sh.h +[ 16%] Generating ../generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -[ 15%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +[ 17%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastpgp.sh.h -[ 15%] Built target ksw2 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/map.sh.h.tmp -[ 15%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh -[ 16%] Generating ../generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h +[ 17%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/rbh.sh.h -[ 16%] Generating ../generated/clustering.sh.h +[ 17%] Generating ../generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h.tmp -[ 17%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh +[ 18%] Generating ../generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linclust.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/clustering.sh.h.tmp -[ 18%] Generating ../generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/clustering.sh.h +[ 19%] Generating ../generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/cascaded_clustering.sh.h -[ 19%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h.tmp +[ 21%] Generating ../generated/createindex.sh.h +[ 20%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchtargetprofile.sh.h -[ 20%] Generating ../generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h +[ 21%] Generating ../generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h -[ 20%] Generating ../generated/createtaxdb.sh.h -[ 20%] Generating ../generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h.tmp +[ 21%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createindex.sh.h -[ 21%] Generating ../generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h.tmp [ 22%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h +[ 23%] Generating ../generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h +[ 23%] Generating ../generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxpercontig.sh.h -[ 22%] Generating ../generated/multihitsearch.sh.h -[ 23%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h.tmp +[ 24%] Generating ../generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -[ 23%] Generating ../generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h.tmp +[ 24%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -[ 23%] Generating ../generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h -[ 23%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastn.sh.h +[ 24%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +[ 25%] Generating ../generated/linsearch.sh.h +[ 25%] Generating ../generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h +[ 26%] Generating ../generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastn.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h.tmp -[ 24%] Generating ../generated/linsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linsearch.sh.h -[ 25%] Generating ../generated/databases.sh.h +[ 26%] Generating ../generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linsearch.sh.h.tmp -[ 25%] Generating ../generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh -[ 26%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated [ 26%] Generating ../generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h -[ 26%] Generating ../generated/tsv2exprofiledb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h.tmp +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/taxonomy.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/pickconsensusrep.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/pickconsensusrep.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/tsv2exprofiledb.sh.h -[ 27%] Linking CXX static library libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 -/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o -/usr/bin/ranlib libtantan.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' -[ 27%] Built target tantan +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/nucleotide_clustering.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' [ 27%] Built target alp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated/K4000.crf.h.tmp @@ -4165,36 +4201,36 @@ make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +[ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/Main.cpp +[ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/CompressedA3M.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/rescorediagonal.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Fwbw.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/Fwbw.cpp -[ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/Main.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/ClusteringAlgorithms.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CSProfile.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o @@ -4212,13 +4248,13 @@ [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 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/usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBWriter.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBWriter.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Debug.cpp -[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/FileUtil.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/ExpressionParser.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/FileUtil.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/GpuUtil.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/GpuUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/GpuUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/GpuUtil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/GpuUtil.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o @@ -4252,8 +4288,8 @@ [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SequenceWeights.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/SequenceWeights.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/SubstitutionMatrix.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Util.cpp @@ -4261,10 +4297,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/CacheFriendlyOperations.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/ExtendedSubstitutionMatrix.cpp -[ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/IndexBuilder.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/Indexer.cpp +[ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/IndexBuilder.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/KmerGenerator.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o @@ -4273,9 +4309,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/Prefiltering.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/PrefilteringIndexReader.cpp -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o +[ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/QueryMatcher.cpp +[ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/ReducedMatrix.cpp [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/SequenceLookup.cpp @@ -4329,10 +4365,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/appenddbtoindex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/appenddbtoindex.cpp [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/apply.cpp +[ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/clusthash.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/calculatelambda.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/calculatelambda.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/calculatelambda.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/calculatelambda.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/calculatelambda.cpp -[ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/clusthash.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o @@ -4380,9 +4416,9 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { | ^~~~~~~~~~~~~~~~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/touchdb.cpp +[ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/touchdb.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filtera3m.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filterdb.cpp @@ -4434,12 +4470,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2msa.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2rbh.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2repseq.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2stats.cpp /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp: In function ‘int result2flat(int, const char**, const Command&)’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp:65:37: warning: ignoring return value of ‘std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size_type std::__cxx11::basic_string<_CharT, _Traits, _Alloc>::size() const [with _CharT = char; _Traits = std::char_traits; _Alloc = std::allocator; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result] 65 | dbKeyBuffer.size(); @@ -4450,34 +4480,16 @@ /usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here 1163 | size() const _GLIBCXX_NOEXCEPT | ^~~~ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp +[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/reverseseq.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/cpmvrmlndb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 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src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizetabs.cpp -[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/swapresults.cpp In file included from /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Matcher::result_t; _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -4633,6 +4645,30 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:345:81: note: ‘’ declared here 345 | compatible.resize(resultPerId.size(), Matcher::result_t()); | ^ +[ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractframes.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment 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src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/subtractdbs.cpp +[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizeheaders.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizeresult.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizetabs.cpp +[ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/swapresults.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/transitivealign.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o @@ -4643,10 +4679,10 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/tsv2db.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tsv2exprofiledb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/tsv2exprofiledb.cpp -[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/unpackdb.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/tar2db.cpp +[ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/unpackdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/unpackdb.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/proteinaln2nucl.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o @@ -4659,9 +4695,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/ClusterUpdate.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Databases.cpp -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o +[ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Linclust.cpp +[ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasySearch.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasyRbh.cpp @@ -4677,17 +4713,17 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Rbh.cpp -[ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Taxonomy.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Search.cpp +[ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/Taxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/PickConsensusRep.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/PickConsensusRep.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/CreateIndex.cpp [ 99%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -MF CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/workflow/CreateIndex.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -MF CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/MMseqsBase.cpp [ 99%] Linking CXX static library libmmseqs-framework.a cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/src && /usr/bin/cmake -P CMakeFiles/mmseqs-framework.dir/cmake_clean_target.cmake @@ -4712,7 +4748,7 @@ make[3]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' - cd build_sse3 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_sse3 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/CMakeFiles /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3//CMakeFiles/progress.marks @@ -4725,9 +4761,9 @@ make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/microtar /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/microtar/CMakeFiles/microtar.dir/DependInfo.cmake "--color=" +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan/CMakeFiles/tantan.dir/DependInfo.cmake "--color=" -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp/CMakeFiles/alp.dir/DependInfo.cmake "--color=" @@ -4741,64 +4777,88 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mmseqs2-18-8cc5c+ds /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/version /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src/version /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src/version/CMakeFiles/version.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -make -f lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/build +make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -make -f lib/microtar/CMakeFiles/microtar.dir/build.make lib/microtar/CMakeFiles/microtar.dir/build -make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' +make -f lib/alp/CMakeFiles/alp.dir/build.make lib/alp/CMakeFiles/alp.dir/build make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make lib/ksw2/CMakeFiles/ksw2.dir/build +make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' +make -f lib/tantan/CMakeFiles/tantan.dir/build.make lib/tantan/CMakeFiles/tantan.dir/build +make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build +make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -[ 1%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -[ 1%] Building CXX object lib/tantan/CMakeFiles/tantan.dir/tantan.cpp.o +[ 0%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o +[ 0%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o [ 1%] Building C object lib/microtar/CMakeFiles/microtar.dir/microtar.c.o -[ 1%] Building CXX object lib/ksw2/CMakeFiles/ksw2.dir/ksw2_extz2_sse.cpp.o -[ 1%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprob.cpp.o -[ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -[ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -[ 2%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tinyexpr && /usr/bin/cc -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -fsigned-char -MD -MT lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o -MF CMakeFiles/tinyexpr.dir/tinyexpr.c.o.d -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan && /usr/bin/c++ 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp -[ 6%] Generating ../generated/VTML80.out.h +[ 2%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o +[ 3%] Generating ../generated/VTML80.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML80.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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src/version/CMakeFiles/version.dir/Version.cpp.o -MF CMakeFiles/version.dir/Version.cpp.o.d -o CMakeFiles/version.dir/Version.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/version/Version.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML80.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML80.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML80.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML80.out.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML80.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML80.out.h -[ 7%] Linking CXX static library libversion.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h.tmp +[ 4%] Linking CXX static library libversion.a +[ 4%] Generating ../generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +[ 4%] Generating ../generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o -MF CMakeFiles/alp.dir/sls_alp_sim.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_sim.cpp +/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o +/usr/bin/ranlib libversion.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h.tmp +[ 5%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h +[ 5%] Built target version /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c: In function ‘base’: /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:373:16: warning: array subscript ‘te_expr[0]’ is partly outside array bounds of ‘unsigned char[16]’ [-Warray-bounds=] 373 | ret->bound = s->bound; @@ -4834,293 +4894,269 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr/tinyexpr.c:88:20: note: object of size 16 allocated by ‘malloc’ 88 | te_expr *ret = malloc(size); | ^~~~~~~~~~~~ -[ 7%] Generating ../generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true VTML40.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -[ 7%] Generating ../generated/nucleotide.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl VTML40.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h -[ 7%] Linking C static library libmicrotar.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake -[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/VTML40.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h.tmp -/usr/bin/ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o -/usr/bin/ranlib libversion.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide.out.h -[ 7%] Generating ../generated/blosum62.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blosum62.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blosum62.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h -[ 7%] Built target version -/usr/bin/ar qc libmicrotar.a CMakeFiles/microtar.dir/microtar.c.o -/usr/bin/ranlib libmicrotar.a -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blosum62.out.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -[ 8%] Built target microtar -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp -[ 8%] Generating ../generated/PAM30.out.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true PAM30.out -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl PAM30.out > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h -[ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/PAM30.out.h -[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp -[ 9%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 9%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 5%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o -MF CMakeFiles/alp.dir/sls_pvalues.cpp.o.d -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_pvalues.cpp +[ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -MF CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o.d -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_dynprogproblim.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 6%] Linking C static library libmicrotar.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/microtar && /usr/bin/cmake -P CMakeFiles/microtar.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/microtar && /usr/bin/cmake -E cmake_link_script CMakeFiles/microtar.dir/link.txt --verbose=1 +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiag.lib.h -[ 10%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h +[ 7%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h -[ 11%] Linking C static library libtinyexpr.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/CovSeqidQscPercMinDiagTargetCov.lib.h +[ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -MF CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o.d -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alignment_evaluer.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp +[ 8%] Generating ../generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/ExpOpt3_8_polished.cs32.lib.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' -[ 12%] Generating ../generated/Library255_may17.lib.h -/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o -/usr/bin/ranlib libtinyexpr.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -[ 12%] Generating ../generated/libPolished_8.lib.h +[ 8%] Generating ../generated/libPolished_8.lib.h +[ 8%] Built target ksw2 +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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/build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true Library255_may17.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true libPolished_8.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl Library255_may17.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl libPolished_8.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h -[ 12%] Built target tinyexpr -[ 12%] Generating ../generated/cs219.lib.h +[ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o -MF CMakeFiles/alp.dir/sls_alp.cpp.o.d -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h +[ 10%] Linking C static library libtinyexpr.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 +[ 10%] Built target microtar +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h +[ 10%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -MF CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o.d -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_localmaxstatutil.cpp +[ 11%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o -MF CMakeFiles/alp.dir/sls_basic.cpp.o.d -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_basic.cpp +[ 11%] Generating ../generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cs219.lib cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h.tmp -[ 13%] Generating ../generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h +[ 12%] Generating ../generated/krona_prelude.html.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true krona_prelude.html -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/libPolished_8.lib.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cs219.lib > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl krona_prelude.html > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h -[ 13%] Generating ../generated/result_viz_prelude.html.zst.h +/usr/bin/ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o +/usr/bin/ranlib libtinyexpr.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' +[ 12%] Built target tinyexpr +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h.tmp +[ 12%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o -MF CMakeFiles/alp.dir/sls_alp_data.cpp.o.d -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/sls_alp_data.cpp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h +[ 13%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/alp && /usr/bin/c++ -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -w -MD -MT lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o -MF CMakeFiles/alp.dir/njn_ioutil.cpp.o.d -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp/njn_ioutil.cpp +[ 14%] Linking CXX static library libtantan.a +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h +[ 14%] Generating ../generated/result_viz_prelude.html.zst.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true result_viz_prelude.html.zst +[ 14%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h -[ 13%] Generating ../generated/K4000.crf.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true K4000.crf -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl result_viz_prelude.html.zst > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/Library255_may17.lib.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl K4000.crf > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/K4000.crf.h -[ 13%] Generating ../generated/easysearch.sh.h +/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o +/usr/bin/ranlib libtantan.a +make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' +[ 14%] Built target tantan +[ 14%] Generating ../generated/easysearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easysearch.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easysearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h.tmp -[ 13%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easysearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easysearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easysearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easysearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cs219.lib.h +[ 14%] Generating ../generated/easycluster.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easycluster.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h -[ 13%] Generating ../generated/easytaxonomy.sh.h +[ 14%] Generating ../generated/easytaxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easytaxonomy.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easycluster.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easytaxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/result_viz_prelude.html.zst.h -[ 14%] Generating ../generated/easyrbh.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh -[ 15%] Generating ../generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easycluster.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h +[ 15%] Generating ../generated/easyrbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true easyrbh.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl easyrbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easyrbh.sh.h +[ 16%] Generating ../generated/blastp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easytaxonomy.sh.h -[ 15%] Generating ../generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +[ 16%] Generating ../generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easyrbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easyrbh.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastpgp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easyrbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/easyrbh.sh.h -[ 15%] Generating ../generated/map.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastpgp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h.tmp -[ 16%] Generating ../generated/rbh.sh.h -[ 16%] Generating ../generated/clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh +[ 16%] Generating ../generated/map.sh.h +[ 17%] Generating ../generated/rbh.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true rbh.sh -[ 16%] Generating ../generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true map.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastpgp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h +[ 17%] Generating ../generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linclust.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl map.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl rbh.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linclust.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/krona_prelude.html.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h.tmp +[ 17%] Generating ../generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h.tmp -[ 17%] Generating ../generated/cascaded_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/map.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h.tmp +[ 18%] Generating ../generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/clustering.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true cascaded_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl cascaded_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h -[ 18%] Generating ../generated/update_clustering.sh.h +[ 20%] Generating ../generated/update_clustering.sh.h +[ 20%] Generating ../generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true update_clustering.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl update_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linclust.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/rbh.sh.h -[ 19%] Generating ../generated/createindex.sh.h -[ 20%] Generating ../generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h.tmp -[ 20%] Generating ../generated/createtaxdb.sh.h +[ 21%] Generating ../generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createindex.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchtargetprofile.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/update_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h +[ 21%] Generating ../generated/createtaxdb.sh.h +[ 21%] Generating ../generated/translated_search.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true createtaxdb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh +[ 22%] Generating ../generated/taxpercontig.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/cascaded_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createindex.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h -[ 20%] Generating ../generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl createtaxdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true translated_search.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createindex.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl translated_search.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h -[ 21%] Generating ../generated/blastn.sh.h -[ 22%] Generating ../generated/enrich.sh.h -[ 23%] Generating ../generated/taxpercontig.sh.h -[ 21%] Generating ../generated/searchslicedtargetprofile.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated [ 23%] Generating ../generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h.tmp -[ 21%] Generating ../generated/multihitsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxpercontig.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitdb.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h.tmp +[ 23%] Generating ../generated/multihitsearch.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true multihitsearch.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/translated_search.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/createtaxdb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h.tmp +[ 23%] Generating ../generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true blastn.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h.tmp +[ 24%] Generating ../generated/enrich.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true enrich.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxpercontig.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitdb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl blastn.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl multihitsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h -[ 24%] Linking CXX static library libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan && /usr/bin/cmake -P CMakeFiles/tantan.dir/cmake_clean_target.cmake -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl enrich.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/enrich.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitsearch.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/multihitdb.sh.h +[ 24%] Generating ../generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/enrich.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/enrich.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/lib/tantan && /usr/bin/cmake -E cmake_link_script CMakeFiles/tantan.dir/link.txt --verbose=1 -[ 24%] Generating ../generated/taxonomy.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true searchslicedtargetprofile.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/enrich.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/enrich.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxpercontig.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/blastn.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl searchslicedtargetprofile.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h +[ 24%] Generating ../generated/taxonomy.sh.h [ 25%] Generating ../generated/linsearch.sh.h -[ 26%] Generating ../generated/databases.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true taxonomy.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true linsearch.sh -/usr/bin/ar qc libtantan.a CMakeFiles/tantan.dir/tantan.cpp.o -/usr/bin/ranlib libtantan.a -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl taxonomy.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h +[ 26%] Generating ../generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true databases.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/searchslicedtargetprofile.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl linsearch.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h -[ 26%] Generating ../generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h.tmp [ 26%] Generating ../generated/pickconsensusrep.sh.h -[ 26%] Generating ../generated/tsv2exprofiledb.sh.h -[ 27%] Generating ../generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true pickconsensusrep.sh -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl databases.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h +[ 27%] Generating ../generated/nucleotide_clustering.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/taxonomy.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true nucleotide_clustering.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl nucleotide_clustering.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h -[ 27%] Built target tantan +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl pickconsensusrep.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h +[ 27%] Generating ../generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linsearch.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linsearch.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true iterativepp.sh cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide_clustering.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h.tmp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linsearch.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/linsearch.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide_clustering.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/nucleotide_clustering.sh.h -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +[ 27%] Generating ../generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/checkshell.sh true tsv2exprofiledb.sh +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/pickconsensusrep.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl iterativepp.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/databases.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mkdir -p /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /build/reproducible-path/mmseqs2-18-8cc5c+ds/cmake/xxdi.pl tsv2exprofiledb.sh > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/iterativepp.sh.h +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/workflow && mv -f /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h.tmp /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/tsv2exprofiledb.sh.h make[4]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' [ 27%] Built target alp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/data/resources && /usr/bin/sed 's!unsigned char!static const unsigned char!' < /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/K4000.crf.h > /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated/K4000.crf.h.tmp @@ -5134,45 +5170,45 @@ make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' [ 27%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -[ 28%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -MF CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment/Main.cpp +[ 27%] Building CXX object 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Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o +[ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o 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src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -MF CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering/ClusteringAlgorithms.cpp +[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp 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-Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CSProfile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CSProfile.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/A3MReader.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Application.cpp -[ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Command.cpp cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/BaseMatrix.cpp +[ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Command.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/CommandCaller.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o @@ -5181,9 +5217,9 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBReader.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/DBWriter.cpp -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o +[ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/Debug.cpp +[ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/ExpressionParser.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -MF CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons/FileUtil.cpp @@ -5250,8 +5286,8 @@ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/UngappedAlignment.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -MF CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering/ungappedprefilter.cpp +[ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit/besthitperset.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -MF CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit/combinepvalperset.cpp @@ -5343,15 +5379,15 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractdomains.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/extractorfs.cpp +/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] + 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { + | ^~~~~~~~~~~~~~~~~~~~~ [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/orftocontig.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/touchdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filtera3m.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filtera3m.cpp -/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/expandaln.cpp:78:13: warning: ‘bool compareHitsByKeyScore(const Matcher::result_t&, const Matcher::result_t&)’ defined but not used [-Wunused-function] - 78 | static bool compareHitsByKeyScore(const Matcher::result_t &first, const Matcher::result_t &second) { - | ^~~~~~~~~~~~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/filterdb.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o @@ -5378,19 +5414,19 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/msa2profile.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering 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src/CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/pairaln.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2neff.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/profile2neff.cpp +[ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/profile2seq.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/recoverlongestorf.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/recoverlongestorf.cpp @@ -5400,14 +5436,6 @@ cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2flat.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2msa.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2rbh.cpp -[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2profile.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/result2repseq.cpp -[ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong 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declared with attribute ‘nodiscard’ [-Wunused-result] 65 | dbKeyBuffer.size(); @@ -5418,24 +5446,20 @@ /usr/include/c++/15/bits/basic_string.h:1163:7: note: declared here 1163 | size() const _GLIBCXX_NOEXCEPT | ^~~~ +[ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong 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-I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 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src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/sortresult.cpp -[ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/subtractdbs.cpp In file included from /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:3: In copy constructor ‘Matcher::result_t::result_t(const Matcher::result_t&)’, inlined from ‘void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = Matcher::result_t; _Args = {const Matcher::result_t&}; _Tp = Matcher::result_t]’ at /usr/include/c++/15/bits/new_allocator.h:191:4, @@ -5591,12 +5615,24 @@ /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/pairaln.cpp:345:81: note: ‘’ declared here 345 | compatible.resize(resultPerId.size(), Matcher::result_t()); | ^ -[ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizealis.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde 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-ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/sequence2profile.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/sequence2profile.cpp +[ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/setextendeddbtype.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr 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src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/subtractdbs.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizeheaders.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizeresult.cpp +[ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o +cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizealis.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/src && /usr/bin/c++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tinyexpr -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/microtar -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/tantan -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simde -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/simd -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/alp -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ksw2 -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/xxhash -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/lib/ips4o -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3/generated -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/alignment -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/clustering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/commons -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/multihit -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/prefiltering -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/linclust -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/taxonomy -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util -I/build/reproducible-path/mmseqs2-18-8cc5c+ds/src/. -g -O2 -ffile-prefix-map=/build/reproducible-path/mmseqs2-18-8cc5c+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -std=c++1y -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -MD -MT src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -MF CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o.d -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /build/reproducible-path/mmseqs2-18-8cc5c+ds/src/util/summarizetabs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o @@ -5687,7 +5723,7 @@ make[1]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds' dh_install -pmmseqs2 debian/bin/simd-dispatch /usr/lib/mmseqs2/ dh_auto_install --builddirectory build_avx2 && dh_auto_install --builddirectory build_avx && dh_auto_install --builddirectory build_sse4.1 && dh_auto_install --builddirectory build_ssse3 && dh_auto_install --builddirectory build_sse3 && true - cd build_avx2 && make -j16 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_avx2 && make -j12 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5699,7 +5735,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-18-8cc5c+ds/debian/tmp/usr/bin/mmseqs-avx2 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx2' - cd build_avx && make -j16 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_avx && make -j12 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5711,7 +5747,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-18-8cc5c+ds/debian/tmp/usr/bin/mmseqs-avx make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_avx' - cd build_sse4.1 && make -j16 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_sse4.1 && make -j12 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5723,7 +5759,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-18-8cc5c+ds/debian/tmp/usr/bin/mmseqs-sse4.1 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse4.1' - cd build_ssse3 && make -j16 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_ssse3 && make -j12 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5735,7 +5771,7 @@ -- Install configuration: "None" -- Installing: /build/reproducible-path/mmseqs2-18-8cc5c+ds/debian/tmp/usr/bin/mmseqs-ssse3 make[2]: Leaving directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_ssse3' - cd build_sse3 && make -j16 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd build_sse3 && make -j12 install DESTDIR=/build/reproducible-path/mmseqs2-18-8cc5c\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3' /usr/bin/cmake -S/build/reproducible-path/mmseqs2-18-8cc5c+ds -B/build/reproducible-path/mmseqs2-18-8cc5c+ds/build_sse3 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -5803,12 +5839,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/147649/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3173376 and its subdirectories -I: Current time: Tue Nov 24 03:25:50 -12 2026 -I: pbuilder-time-stamp: 1795533950 +I: removing directory /srv/workspace/pbuilder/147649 and its subdirectories +I: Current time: Wed Oct 22 23:13:59 +14 2025 +I: pbuilder-time-stamp: 1761124439