Diff of the two buildlogs: -- --- b1/build.log 2025-09-10 12:55:52.265908414 +0000 +++ b2/build.log 2025-09-10 13:07:42.142771070 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 10 00:43:03 -12 2025 -I: pbuilder-time-stamp: 1757508183 +I: Current time: Wed Oct 14 09:18:54 +14 2026 +I: pbuilder-time-stamp: 1791919134 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying remove-recogniser-tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/61811/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 13 19:19 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='2b04d5f5b14f4b49a7746774e3136ec8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='61811' - PS1='# ' - PS2='> ' + INVOCATION_ID=4f676acbe9164fd69023bb0404ed1690 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=773342 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uxOqKIlN/pbuilderrc_4xhj --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uxOqKIlN/b1 --logfile b1/build.log oscar4_5.3.0+dfsg-1.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.uxOqKIlN/pbuilderrc_SXha --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.uxOqKIlN/b2 --logfile b2/build.log oscar4_5.3.0+dfsg-1.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/61811/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -455,7 +487,7 @@ Get: 314 http://deb.debian.org/debian forky/main amd64 maven-repo-helper all 1.12 [136 kB] Get: 315 http://deb.debian.org/debian forky/main amd64 unzip amd64 6.0-29 [173 kB] Get: 316 http://deb.debian.org/debian forky/main amd64 maven-debian-helper all 2.6.8 [107 kB] -Fetched 351 MB in 49s (7209 kB/s) +Fetched 351 MB in 6s (57.3 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -1952,7 +1984,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/oscar4-5.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../oscar4_5.3.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/oscar4-5.3.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../oscar4_5.3.0+dfsg-1_source.changes dpkg-buildpackage: info: source package oscar4 dpkg-buildpackage: info: source version 5.3.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2580,24 +2616,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.3.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.329 s] -[INFO] oscar4-core ........................................ SUCCESS [ 4.594 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 1.209 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 1.757 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.353 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.945 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.989 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.205 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.236 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.235 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.086 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.067 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.154 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.252 s] +[INFO] oscar4-core ........................................ SUCCESS [ 2.561 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.773 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 1.178 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.246 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.799 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.728 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.178 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.149 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.474 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.078 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.066 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.146 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 11.397 s -[INFO] Finished at: 2025-09-10T12:47:11Z +[INFO] Total time: 7.776 s +[INFO] Finished at: 2026-10-13T19:20:34Z [INFO] ------------------------------------------------------------------------ dh_auto_test /usr/lib/jvm/default-java/bin/java -noverify -cp /usr/share/maven/boot/plexus-classworlds-2.x.jar -Dmaven.home=/usr/share/maven -Dmaven.multiModuleProjectDirectory=/build/reproducible-path/oscar4-5.3.0\+dfsg -Dclassworlds.conf=/etc/maven/m2-debian.conf org.codehaus.plexus.classworlds.launcher.Launcher -s/etc/maven/settings-debian.xml -Ddebian.dir=/build/reproducible-path/oscar4-5.3.0\+dfsg/debian -Dmaven.repo.local=/build/reproducible-path/oscar4-5.3.0\+dfsg/debian/maven-repo --batch-mode test @@ -2652,37 +2688,37 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.113 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTagTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.049 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTagTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest +[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest [INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.types.NamedEntityTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.types.BioTypeTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenSequenceTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.TokenTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.NamedEntitityTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.util.CacheMapTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.xmltools.XOMToolsTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.TokenTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.143 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest -[INFO] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 s - in uk.ac.cam.ch.wwmm.oscar.tools.StringToolsTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.tools.StandoffTableTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest -[WARNING] Tests run: 9, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.011 s - in uk.ac.cam.ch.wwmm.oscar.tools.ResourceGetterTest +[INFO] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.cam.ch.wwmm.oscar.terms.TermSetsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizingReaderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.normalize.NormalizerTest [INFO] [INFO] Results: [INFO] @@ -2713,27 +2749,27 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.158 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.766 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ImmutableChemNameDictTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.831 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.461 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.ChemNameDictRegistryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest [INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.core.MutableChemNameDictTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ChemicalStructureTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.entities.ResolvedNamedEntityTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.tools.ResourceGetterTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.PolymerDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.ChEBIDictionaryTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.chemnamedict.dictionaries.DefaultDictionaryTest [INFO] [INFO] Results: [INFO] @@ -2764,17 +2800,17 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.588 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.292 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.874 s - in uk.ac.cam.ch.wwmm.oscar.ont.OntologyTermsTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.79 s - in uk.ac.cam.ch.wwmm.oscar.ont.TermsFileReaderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.ont.EquivalentTermSetTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 8.881 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 9.487 s - in uk.ac.cam.ch.wwmm.oscar.obo.OBOOntologyTest [INFO] [INFO] Results: [INFO] @@ -2809,15 +2845,15 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.648 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest -[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest +[WARNING] Tests run: 35, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.972 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokeniserTest [INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest -[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscartokeniser.TokenClassifierTest +[INFO] Running uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscartokeniser.HyphenTokeniserTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest -[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[INFO] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscar.document.AdditionalTokenSequenceTest +[INFO] Running uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscar.document.ProcessingDocumentFactoryTest [INFO] [INFO] Results: [INFO] @@ -2848,29 +2884,29 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 3.703 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest -[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.641 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.122 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.TermMapsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.AutomatonStateTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest -[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.28 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[WARNING] Tests run: 6, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.34 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFASupplementaryTermFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest +[WARNING] Tests run: 8, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 3.637 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.655 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.finder.DFAONTCPRFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest -[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 12.492 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest +[WARNING] Tests run: 11, Failures: 0, Errors: 0, Skipped: 3, Time elapsed: 12.049 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.NGramBuilderTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.saf.StandoffResolverTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.tokenanalysis.PrefixFinderTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.extractedtrainingdata.ExtractedTrainingDataTest [INFO] Running uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarrecogniser.regex.RegexRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2901,23 +2937,23 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.219 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.206 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.321 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest -[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 25.345 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.936 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest -[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.12 s - in uk.ac.cam.ch.wwmm.oscarMEMM.Oscar4RegressionTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarMEMM.rescorer.ProbabilityConvertorTest [INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 s - in uk.ac.cam.ch.wwmm.oscarMEMM.ResourceGetterTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.292 s - in uk.ac.cam.ch.wwmm.oscarMEMM.memm.MEMMModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.108 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.ChemPapersModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.188 s - in uk.ac.cam.ch.wwmm.oscarMEMM.models.PubMedModelTest +[INFO] Running uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest +[INFO] Tests run: 31, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 28.058 s - in uk.ac.cam.ch.wwmm.oscarMEMM.MEMMRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2952,7 +2988,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 45.296 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest +[INFO] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 119.706 s - in uk.ac.cam.ch.wwmm.oscarpattern.PatternRecogniserTest [INFO] [INFO] Results: [INFO] @@ -2984,12 +3020,12 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.827 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.087 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinDictionaryTest [INFO] Running uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.384 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.489 s - in uk.ac.cam.ch.wwmm.oscar.opsin.OpsinResolutionTest [INFO] [INFO] Results: [INFO] @@ -3024,7 +3060,7 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 40.409 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest +[INFO] Tests run: 19, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 42.486 s - in uk.ac.cam.ch.wwmm.oscar.OscarTest [INFO] [INFO] Results: [INFO] @@ -3056,7 +3092,7 @@ [INFO] T E S T S [INFO] ------------------------------------------------------- [INFO] Running uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.065 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.085 s - in uk.ac.cam.ch.wwmm.oscarpreprocessor.InputAnalyzerTest [INFO] [INFO] Results: [INFO] @@ -3113,15 +3149,15 @@ SLF4J: Failed to load class "org.slf4j.impl.StaticLoggerBinder". SLF4J: Defaulting to no-operation (NOP) logger implementation SLF4J: See http://www.slf4j.org/codes.html#StaticLoggerBinder for further details. -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.934 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.911 s - in uk.ac.cam.ch.wwmm.oscardata.DataAnnotationTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.013 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.DataParserTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.089 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.091 s - in uk.ac.cam.ch.wwmm.oscardata.DataParserTest [INFO] Running uk.ac.cam.ch.wwmm.oscardata.OscarDataTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscardata.RegexValidationTest -[INFO] Running uk.ac.cam.ch.wwmm.oscardata.RPNodeTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 s - in uk.ac.cam.ch.wwmm.oscardata.RPNodeTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 s - in uk.ac.cam.ch.wwmm.oscardata.OscarDataTest [INFO] [INFO] Results: [INFO] @@ -3130,24 +3166,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.3.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.343 s] -[INFO] oscar4-core ........................................ SUCCESS [ 33.060 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 33.681 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 41.270 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 31.871 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 48.773 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [01:02 min] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [01:15 min] -[INFO] oscar4-opsin ....................................... SUCCESS [ 31.782 s] -[INFO] oscar4-api ......................................... SUCCESS [01:11 min] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 31.863 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.279 s] -[INFO] oscar4-data ........................................ SUCCESS [ 31.854 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.255 s] +[INFO] oscar4-core ........................................ SUCCESS [ 33.159 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 33.808 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 43.098 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 33.050 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 49.050 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [01:06 min] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [02:31 min] +[INFO] oscar4-opsin ....................................... SUCCESS [ 34.333 s] +[INFO] oscar4-api ......................................... SUCCESS [01:13 min] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 30.781 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.220 s] +[INFO] oscar4-data ........................................ SUCCESS [ 33.173 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 08:14 min -[INFO] Finished at: 2025-09-10T12:55:27Z +[INFO] Total time: 09:42 min +[INFO] Finished at: 2026-10-13T19:30:17Z [INFO] ------------------------------------------------------------------------ create-stamp debian/debhelper-build-stamp dh_prep @@ -3343,24 +3379,24 @@ [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary for oscar4-parent 5.3.0: [INFO] -[INFO] oscar4-parent ...................................... SUCCESS [ 0.310 s] -[INFO] oscar4-core ........................................ SUCCESS [ 0.040 s] -[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.028 s] -[INFO] oscar4-obo ......................................... SUCCESS [ 0.111 s] -[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.423 s] -[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.628 s] -[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.026 s] -[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.022 s] -[INFO] oscar4-opsin ....................................... SUCCESS [ 0.259 s] -[INFO] oscar4-api ......................................... SUCCESS [ 0.193 s] -[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.021 s] -[INFO] oscar4-formatter ................................... SUCCESS [ 0.021 s] -[INFO] oscar4-data ........................................ SUCCESS [ 0.023 s] +[INFO] oscar4-parent ...................................... SUCCESS [ 0.597 s] +[INFO] oscar4-core ........................................ SUCCESS [ 0.041 s] +[INFO] Chemical Name Dictionaries ......................... SUCCESS [ 0.026 s] +[INFO] oscar4-obo ......................................... SUCCESS [ 0.031 s] +[INFO] oscar4-tokenizer ................................... SUCCESS [ 0.032 s] +[INFO] oscar4-recogniser-core ............................. SUCCESS [ 0.045 s] +[INFO] oscar4-memmrecogniser .............................. SUCCESS [ 0.045 s] +[INFO] oscar4-patternrecogniser ........................... SUCCESS [ 0.046 s] +[INFO] oscar4-opsin ....................................... SUCCESS [ 0.287 s] +[INFO] oscar4-api ......................................... SUCCESS [ 0.036 s] +[INFO] oscar4-preprocessor ................................ SUCCESS [ 0.031 s] +[INFO] oscar4-formatter ................................... SUCCESS [ 0.071 s] +[INFO] oscar4-data ........................................ SUCCESS [ 0.318 s] [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 2.343 s -[INFO] Finished at: 2025-09-10T12:55:31Z +[INFO] Total time: 1.803 s +[INFO] Finished at: 2026-10-13T19:30:20Z [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -pliboscar4-java --base-directory=/build/reproducible-path/oscar4-5.3.0\+dfsg --non-explore Analysing pom.xml... @@ -3410,12 +3446,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/773342/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/61811 and its subdirectories -I: Current time: Wed Sep 10 00:55:51 -12 2025 -I: pbuilder-time-stamp: 1757508951 +I: removing directory /srv/workspace/pbuilder/773342 and its subdirectories +I: Current time: Wed Oct 14 09:30:41 +14 2026 +I: pbuilder-time-stamp: 1791919841