Diff of the two buildlogs: -- --- b1/build.log 2025-11-06 01:36:05.902312783 +0000 +++ b2/build.log 2025-11-06 01:38:43.094501897 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 5 13:32:50 -12 2025 -I: pbuilder-time-stamp: 1762392770 +I: Current time: Wed Jan 12 04:22:06 +14 2028 +I: pbuilder-time-stamp: 1831213326 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying switch-to-tasty.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1795309/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 11 14:22 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b696ff06b1f740b5845e0216bda2a24a' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1795309' - PS1='# ' - PS2='> ' + INVOCATION_ID=84c5ba21b3ce49258250592ec640b3ef + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1744538 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rpoBgurL/pbuilderrc_hUHv --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rpoBgurL/b1 --logfile b1/build.log phybin_0.3-7.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.rpoBgurL/pbuilderrc_YjX9 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.rpoBgurL/b2 --logfile b2/build.log phybin_0.3-7.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1795309/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -257,7 +289,7 @@ Get: 116 http://deb.debian.org/debian forky/main amd64 libghc-tasty-th-dev amd64 0.1.7-7+b1 [22.9 kB] Get: 117 http://deb.debian.org/debian forky/main amd64 libghc-vector-stream-dev amd64 0.1.0.1-1+b1 [102 kB] Get: 118 http://deb.debian.org/debian forky/main amd64 libghc-vector-dev amd64 0.13.1.0-2+b1 [1635 kB] -Fetched 108 MB in 11s (9382 kB/s) +Fetched 108 MB in 3s (40.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libgmpxx4ldbl:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -688,9 +720,9 @@ Setting up ghc (9.6.6-4) ... update-alternatives: using /usr/bin/runghc to provide /usr/bin/runhaskell (runhaskell) in auto mode update-alternatives: using /usr/bin/ghc to provide /usr/bin/haskell-compiler (haskell-compiler) in auto mode -Warning: include-dirs: /usr/lib/ghc/lib/../lib/x86_64-linux-ghc-9.6.6/directory-1.3.8.5/include doesn't exist or isn't a directory Warning: library-dirs: /usr/lib/gcc/x86_64-linux-gnu/14 doesn't exist or isn't a directory Warning: dynamic-library-dirs: /usr/lib/gcc/x86_64-linux-gnu/14 doesn't exist or isn't a directory +Warning: include-dirs: /usr/lib/ghc/lib/../lib/x86_64-linux-ghc-9.6.6/directory-1.3.8.5/include doesn't exist or isn't a directory Setting up libghc-prettyclass-dev (1.0.0.0-12+b1) ... Setting up libghc-src-exts-dev (1.23.1-5+b1) ... Setting up po-debconf (1.0.21+nmu1) ... @@ -755,7 +787,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/phybin-0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../phybin_0.3-7_source.changes +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/phybin-0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../phybin_0.3-7_source.changes dpkg-buildpackage: info: source package phybin dpkg-buildpackage: info: source version 0.3-7 dpkg-buildpackage: info: source distribution unstable @@ -779,14 +815,14 @@ Running ghc --make Setup.hs -o debian/hlibrary.setup [1 of 2] Compiling Main ( Setup.hs, Setup.o ) [2 of 2] Linking debian/hlibrary.setup -Running find . ! -newer /tmp/FVvwDzrWdx -exec touch -d 1998-01-01 UTC {} ; +Running find . ! -newer /tmp/RUxLsw91gW -exec touch -d 1998-01-01 UTC {} ; Running dh_listpackages phybin Running dh_listpackages phybin Running dpkg-buildflags --get LDFLAGS -Wl,-z,relro -Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl,-z,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ --enable-tests +Running debian/hlibrary.setup configure --ghc -v2 --package-db=/var/lib/ghc/package.conf.d --prefix=/usr --libdir=/usr/lib/haskell-packages/ghc/lib --libexecdir=/usr/lib --builddir=dist-ghc --ghc-option=-optl-Wl,-z,relro --haddockdir=/usr/lib/ghc-doc/haddock/phybin-0.3/ --datasubdir=phybin --htmldir=/usr/share/doc/libghc-phybin-doc/html/ Running Setup.hs ... Using Parsec parser Configuring phybin-0.3... @@ -826,51 +862,11 @@ Dependency text: using text-2.0.2 Dependency time: using time-1.12.2 Dependency vector >=0.10: using vector-0.13.1.0 -Dependency HUnit: using HUnit-1.6.2.0 -Dependency async: using async-2.2.5 -Dependency base >=3 && <5: using base-4.18.2.1 -Dependency bytestring: using bytestring-0.11.5.3 -Dependency containers: using containers-0.6.7 -Dependency directory: using directory-1.3.8.5 -Dependency fgl: using fgl-5.8.3.0 -Dependency filepath: using filepath-1.4.300.1 -Dependency graphviz >=2999.16: using graphviz-2999.20.2.0 -Dependency hierarchical-clustering >=0.4: using hierarchical-clustering-0.4.7 -Dependency parsec >=3.1.0: using parsec-3.1.16.1 -Dependency prettyclass: using prettyclass-1.0.0.0 -Dependency process: using process-1.6.19.0 -Dependency split >=0.2: using split-0.2.5 -Dependency tasty-hunit: using tasty-hunit-0.10.2 -Dependency tasty-th: using tasty-th-0.1.7 -Dependency text: using text-2.0.2 -Dependency time: using time-1.12.2 -Dependency vector >=0.10: using vector-0.13.1.0 Source component graph: - component test:test-phybin component lib component exe:phybin dependency lib Configured component graph: - component phybin-0.3-IEdBrRI1YBqK1KerTxNJK8-test-phybin - include HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX - include async-2.2.5-GwkBUQRsnGI18fyHYiVZaH - include base-4.18.2.1 - include bytestring-0.11.5.3 - include containers-0.6.7 - include directory-1.3.8.5 - include fgl-5.8.3.0-VKMas29N2lHUhyTZ6ovEn - include filepath-1.4.300.1 - include graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB - include hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ - include parsec-3.1.16.1 - include prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi - include process-1.6.19.0 - include split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG - include tasty-hunit-0.10.2-5JeOukpggCxmW3MfPokrE - include tasty-th-0.1.7-AXbglQEcPfW2jNv6mk5XQg - include text-2.0.2 - include time-1.12.2 - include vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL - component phybin-0.3-DGbongSi2iE1W6bCmnoB0E + component phybin-0.3-38zpnR60toC2XUBvfmYKH6 include HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX include async-2.2.5-GwkBUQRsnGI18fyHYiVZaH include base-4.18.2.1 @@ -888,7 +884,7 @@ include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL - component phybin-0.3-EvmunldQQpB2owGoqHvQj6-phybin + component phybin-0.3-76475ePFA8tGTr8kJIcZEX-phybin include HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX include async-2.2.5-GwkBUQRsnGI18fyHYiVZaH include base-4.18.2.1 @@ -900,7 +896,7 @@ include graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB include hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ include parsec-3.1.16.1 - include phybin-0.3-DGbongSi2iE1W6bCmnoB0E + include phybin-0.3-38zpnR60toC2XUBvfmYKH6 include prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi include process-1.6.19.0 include split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG @@ -908,27 +904,7 @@ include time-1.12.2 include vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL Linked component graph: - unit phybin-0.3-IEdBrRI1YBqK1KerTxNJK8-test-phybin - include HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX - include async-2.2.5-GwkBUQRsnGI18fyHYiVZaH - include base-4.18.2.1 - include bytestring-0.11.5.3 - include containers-0.6.7 - include directory-1.3.8.5 - include fgl-5.8.3.0-VKMas29N2lHUhyTZ6ovEn - include filepath-1.4.300.1 - include graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB - include hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ - include parsec-3.1.16.1 - include prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi - include process-1.6.19.0 - include split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG - include tasty-hunit-0.10.2-5JeOukpggCxmW3MfPokrE - include tasty-th-0.1.7-AXbglQEcPfW2jNv6mk5XQg - include text-2.0.2 - include time-1.12.2 - include vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL - unit phybin-0.3-DGbongSi2iE1W6bCmnoB0E + unit phybin-0.3-38zpnR60toC2XUBvfmYKH6 include HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX include async-2.2.5-GwkBUQRsnGI18fyHYiVZaH include base-4.18.2.1 @@ -946,8 +922,8 @@ include text-2.0.2 include time-1.12.2 include vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL - Bio.Phylogeny.PhyBin=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-DGbongSi2iE1W6bCmnoB0E:Bio.Phylogeny.PhyBin.Visualize - unit phybin-0.3-EvmunldQQpB2owGoqHvQj6-phybin + Bio.Phylogeny.PhyBin=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin,Bio.Phylogeny.PhyBin.Binning=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.Binning,Bio.Phylogeny.PhyBin.CoreTypes=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.CoreTypes,Bio.Phylogeny.PhyBin.Parser=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.Parser,Bio.Phylogeny.PhyBin.PreProcessor=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.PreProcessor,Bio.Phylogeny.PhyBin.RFDistance=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.RFDistance,Bio.Phylogeny.PhyBin.Util=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.Util,Bio.Phylogeny.PhyBin.Visualize=phybin-0.3-38zpnR60toC2XUBvfmYKH6:Bio.Phylogeny.PhyBin.Visualize + unit phybin-0.3-76475ePFA8tGTr8kJIcZEX-phybin include HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX include async-2.2.5-GwkBUQRsnGI18fyHYiVZaH include base-4.18.2.1 @@ -959,7 +935,7 @@ include graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB include hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ include parsec-3.1.16.1 - include phybin-0.3-DGbongSi2iE1W6bCmnoB0E + include phybin-0.3-38zpnR60toC2XUBvfmYKH6 include prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi include process-1.6.19.0 include split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG @@ -967,27 +943,7 @@ include time-1.12.2 include vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL Ready component graph: - definite phybin-0.3-IEdBrRI1YBqK1KerTxNJK8-test-phybin - depends HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX - depends async-2.2.5-GwkBUQRsnGI18fyHYiVZaH - depends base-4.18.2.1 - depends bytestring-0.11.5.3 - depends containers-0.6.7 - depends directory-1.3.8.5 - depends fgl-5.8.3.0-VKMas29N2lHUhyTZ6ovEn - depends filepath-1.4.300.1 - depends graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB - depends hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ - depends parsec-3.1.16.1 - depends prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi - depends process-1.6.19.0 - depends split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG - depends tasty-hunit-0.10.2-5JeOukpggCxmW3MfPokrE - depends tasty-th-0.1.7-AXbglQEcPfW2jNv6mk5XQg - depends text-2.0.2 - depends time-1.12.2 - depends vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL - definite phybin-0.3-DGbongSi2iE1W6bCmnoB0E + definite phybin-0.3-38zpnR60toC2XUBvfmYKH6 depends HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX depends async-2.2.5-GwkBUQRsnGI18fyHYiVZaH depends base-4.18.2.1 @@ -1005,7 +961,7 @@ depends text-2.0.2 depends time-1.12.2 depends vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL - definite phybin-0.3-EvmunldQQpB2owGoqHvQj6-phybin + definite phybin-0.3-76475ePFA8tGTr8kJIcZEX-phybin depends HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX depends async-2.2.5-GwkBUQRsnGI18fyHYiVZaH depends base-4.18.2.1 @@ -1017,7 +973,7 @@ depends graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB depends hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ depends parsec-3.1.16.1 - depends phybin-0.3-DGbongSi2iE1W6bCmnoB0E + depends phybin-0.3-38zpnR60toC2XUBvfmYKH6 depends prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi depends process-1.6.19.0 depends split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG @@ -1029,7 +985,7 @@ Using install prefix: /usr Executables installed in: /usr/bin Libraries installed in: -/usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E +/usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6 Dynamic Libraries installed in: /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6 Private executables installed in: /usr/lib/x86_64-linux-ghc-9.6.6/phybin-0.3 @@ -1066,217 +1022,6 @@ Running dh_listpackages phybin Running Setup.hs ... -Preprocessing test suite 'test-phybin' for phybin-0.3.. -Building test suite 'test-phybin' for phybin-0.3.. - -: warning: [GHC-32850] [-Wmissing-home-modules] - These modules are needed for compilation but not listed in your .cabal file's other-modules for `main' : - Bio.Phylogeny.PhyBin - Bio.Phylogeny.PhyBin.Binning - Bio.Phylogeny.PhyBin.CoreTypes - Bio.Phylogeny.PhyBin.Parser - Bio.Phylogeny.PhyBin.PreProcessor - Bio.Phylogeny.PhyBin.RFDistance - Bio.Phylogeny.PhyBin.Util - Bio.Phylogeny.PhyBin.Visualize -[1 of 9] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/CoreTypes.dyn_o ) - -Bio/Phylogeny/PhyBin/CoreTypes.hs:37:1: warning: [-Wunused-imports] - The qualified import of `Data.Set' is redundant - except perhaps to import instances from `Data.Set' - To import instances alone, use: import Data.Set() - | -37 | import qualified Data.Set as S - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin/CoreTypes.hs:38:1: warning: [-Wunused-imports] - The import of `Data.Foldable' is redundant - except perhaps to import instances from `Data.Foldable' - To import instances alone, use: import Data.Foldable() - | -38 | import Data.Foldable (Foldable(..)) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin/CoreTypes.hs:40:1: warning: [-Wunused-imports] - The import of `Data.Monoid' is redundant - except perhaps to import instances from `Data.Monoid' - To import instances alone, use: import Data.Monoid() - | -40 | import Data.Monoid (mappend, mconcat) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ -[2 of 9] Compiling Bio.Phylogeny.PhyBin.Parser ( Bio/Phylogeny/PhyBin/Parser.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Parser.dyn_o ) - -Bio/Phylogeny/PhyBin/Parser.hs:81:1: warning: [GHC-94817] [-Wtabs] - Tab character found here, and in five further locations. - Suggested fix: Please use spaces instead. - | -81 | Left err -> error ("parse error in file "++ show file ++" at "++ show err) - | ^^^^^^^^ - -Bio/Phylogeny/PhyBin/Parser.hs:98:4: warning: [GHC-62161] [-Wincomplete-patterns] - Pattern match(es) are non-exhaustive - In an equation for `loop2': - Patterns of type `Map a Label', `Map Int a', - `NewickTree (a, Maybe a1)' not matched: - _ _ (NTLeaf (_, Nothing) _) - _ _ (NTInterior (_, (Just _)) _) - | -98 | loop2 seen acc (NTLeaf (d,Just nm) _) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... - -Bio/Phylogeny/PhyBin/Parser.hs:122:3: warning: [GHC-62161] [-Wincomplete-patterns] - Pattern match(es) are non-exhaustive - In a case alternative: - Patterns of type `NewickTree (DefDecor, Maybe String)' not matched: - NTInterior (_, (Just _)) _ - | -122 | case s of - | ^^^^^^^^^^... -[3 of 9] Compiling Bio.Phylogeny.PhyBin.PreProcessor ( Bio/Phylogeny/PhyBin/PreProcessor.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/PreProcessor.dyn_o ) -[4 of 9] Compiling Bio.Phylogeny.PhyBin.RFDistance ( Bio/Phylogeny/PhyBin/RFDistance.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/RFDistance.dyn_o ) - -Bio/Phylogeny/PhyBin/RFDistance.hs:437:21: warning: [GHC-47082] [-Woperator-whitespace-ext-conflict] - The prefix use of a `$' would denote an untyped splice - were the TemplateHaskell extension enabled. - Suggested fix: Add whitespace after the `$'. - | -437 | [] -> error $"bipsToTree: Internal error! No match for bip: "++show bip - | ^ -[5 of 9] Compiling Bio.Phylogeny.PhyBin.Util ( Bio/Phylogeny/PhyBin/Util.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Util.dyn_o ) - -Bio/Phylogeny/PhyBin/Util.hs:97:1: warning: [GHC-94817] [-Wtabs] - Tab character found here, and in 13 further locations. - Suggested fix: Please use spaces instead. - | -97 | -- hPutStr stderr$ "Input not a file/directory, assuming wildcard, using 'find' for expansion" - | ^^^^^^^^ -[6 of 9] Compiling Bio.Phylogeny.PhyBin.Visualize ( Bio/Phylogeny/PhyBin/Visualize.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Visualize.dyn_o ) - -Bio/Phylogeny/PhyBin/Visualize.hs:247:1: warning: [GHC-94817] [-Wtabs] - Tab character found here, and in 29 further locations. - Suggested fix: Please use spaces instead. - | -247 | tree - | ^^^^^^^^ -[7 of 9] Compiling Bio.Phylogeny.PhyBin.Binning ( Bio/Phylogeny/PhyBin/Binning.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin/Binning.dyn_o ) - -Bio/Phylogeny/PhyBin/Binning.hs:22:1: warning: [-Wunused-imports] - The import of `Control.Applicative' is redundant - except perhaps to import instances from `Control.Applicative' - To import instances alone, use: import Control.Applicative() - | -22 | import Control.Applicative ((<$>),(<*>)) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin/Binning.hs:60:1: warning: [GHC-94817] [-Wtabs] - Tab character found here, and in 58 further locations. - Suggested fix: Please use spaces instead. - | -60 | ++ "Pretty printing:\n " - | ^^^^^^^^ -[8 of 9] Compiling Bio.Phylogeny.PhyBin ( Bio/Phylogeny/PhyBin.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.o, dist-ghc/build/test-phybin/test-phybin-tmp/Bio/Phylogeny/PhyBin.dyn_o ) - -Bio/Phylogeny/PhyBin.hs:17:1: warning: [-Wunused-imports] - The import of `delete, intersperse, minimumBy' - from module `Data.List' is redundant - | -17 | import Data.List (delete, minimumBy, sortBy, foldl1', foldl', intersperse, isPrefixOf) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:28:52: warning: [-Wunused-imports] - The import of `filterM' from module `Control.Monad' is redundant - | -28 | import Control.Monad (forM, forM_, filterM, when, unless) - | ^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:31:1: warning: [-Wunused-imports] - The import of `Control.Applicative' is redundant - except perhaps to import instances from `Control.Applicative' - To import instances alone, use: import Control.Applicative() - | -31 | import Control.Applicative ((<$>),(<*>)) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:32:1: warning: [-Wunused-imports] - The import of `Control.Concurrent' is redundant - except perhaps to import instances from `Control.Concurrent' - To import instances alone, use: import Control.Concurrent() - | -32 | import Control.Concurrent (Chan) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:35:1: warning: [-Wunused-imports] - The import of `doesFileExist, getDirectoryContents' - from module `System.Directory' is redundant - | -35 | import System.Directory (doesFileExist, doesDirectoryExist, createDirectoryIfMissing, - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^... - -Bio/Phylogeny/PhyBin.hs:37:1: warning: [-Wunused-imports] - The import of `hClose, openFile' - from module `System.IO' is redundant - | -37 | import System.IO (openFile, hClose, IOMode(..), stdout, withFile) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:40:1: warning: [-Wunused-imports] - The import of `System.Exit' is redundant - except perhaps to import instances from `System.Exit' - To import instances alone, use: import System.Exit() - | -40 | import System.Exit (ExitCode(..)) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:41:1: warning: [-Wunused-imports] - The import of `Test.HUnit' is redundant - except perhaps to import instances from `Test.HUnit' - To import instances alone, use: import Test.HUnit() - | -41 | import Test.HUnit ((~:),(~=?),Test,test) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:43:1: warning: [-Wunused-imports] - The qualified import of `Data.GraphViz' is redundant - except perhaps to import instances from `Data.GraphViz' - To import instances alone, use: import Data.GraphViz() - | -43 | import qualified Data.GraphViz as Gv - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:47:1: warning: [-Wunused-imports] - The import of `Data.GraphViz.Printing' is redundant - except perhaps to import instances from `Data.GraphViz.Printing' - To import instances alone, use: import Data.GraphViz.Printing() - | -47 | import Data.GraphViz.Printing (renderDot) - | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:52:75: warning: [-Wunused-imports] - The import of `viewNewickTree' - from module `Bio.Phylogeny.PhyBin.Visualize' is redundant - | -52 | import Bio.Phylogeny.PhyBin.Visualize (dotToPDF, dotNewickTree, viewNewickTree, dotDendrogram) - | ^^^^^^^^^^^^^^ - -Bio/Phylogeny/PhyBin.hs:120:3: warning: [GHC-94817] [-Wtabs] - Tab character found here, and in 25 further locations. - Suggested fix: Please use spaces instead. - | -120 | if reg - | ^^^^^^ -[9 of 9] Compiling Main ( TestAll.hs, dist-ghc/build/test-phybin/test-phybin-tmp/Main.o ) - -: warning: [GHC-32850] [-Wmissing-home-modules] - These modules are needed for compilation but not listed in your .cabal file's other-modules for `main' : - Bio.Phylogeny.PhyBin - Bio.Phylogeny.PhyBin.Binning - Bio.Phylogeny.PhyBin.CoreTypes - Bio.Phylogeny.PhyBin.Parser - Bio.Phylogeny.PhyBin.PreProcessor - Bio.Phylogeny.PhyBin.RFDistance - Bio.Phylogeny.PhyBin.Util - Bio.Phylogeny.PhyBin.Visualize -[10 of 10] Linking dist-ghc/build/test-phybin/test-phybin Preprocessing library for phybin-0.3.. Building library for phybin-0.3.. [1 of 8] Compiling Bio.Phylogeny.PhyBin.CoreTypes ( Bio/Phylogeny/PhyBin/CoreTypes.hs, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.o, dist-ghc/build/Bio/Phylogeny/PhyBin/CoreTypes.dyn_o ) @@ -1709,11 +1454,6 @@ Running: /usr/bin/ghc --print-libdir Running: /usr/bin/haddock --ghc-version '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js' Running: /usr/bin/ghc-pkg-9.6.6 init dist-ghc/package.conf.inplace -creating dist-ghc/build/test-phybin -creating dist-ghc/build/test-phybin/autogen -creating dist-ghc/build/test-phybin/autogen -creating dist-ghc/build/test-phybin/autogen -Preprocessing test suite 'test-phybin' for phybin-0.3.. creating dist-ghc/build creating dist-ghc/build/autogen creating dist-ghc/build/autogen @@ -1725,7 +1465,7 @@ creating dist-ghc/doc creating dist-ghc/doc/html creating dist-ghc/doc/html/phybin -Running: /usr/bin/haddock '@dist-ghc/doc/html/phybin/haddock-response1834365-1.txt' '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js' +Running: /usr/bin/haddock '@dist-ghc/doc/html/phybin/haddock-response1756495-1.txt' '--mathjax=file:///usr/share/javascript/mathjax/MathJax.js' Warning: 'normalize' is out of scope. If you qualify the identifier, haddock can try to link it anyway. 76% ( 26 / 34) in 'Bio.Phylogeny.PhyBin.CoreTypes' @@ -1916,19 +1656,7 @@ creating dist-ghc/build/phybin/autogen creating dist-ghc/build/phybin/autogen Preprocessing executable 'phybin' for phybin-0.3.. - dh_auto_test --buildsystem=haskell -Running dh_listpackages -phybin -Running Setup.hs ... -Running 1 test suites... -Test suite test-phybin: RUNNING... -Main - t30: OK - -All 1 tests passed (0.00s) -Test suite test-phybin: PASS -Test suite logged to: dist-ghc/test/phybin-0.3-test-phybin.log -1 of 1 test suites (1 of 1 test cases) passed. +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --buildsystem=haskell --destdir=debian/phybin/ @@ -1936,7 +1664,7 @@ phybin Running debian/hlibrary.setup copy --builddir=dist-ghc --destdir=debian/tmp Running Setup.hs ... -Installing library in debian/tmp/usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E +Installing library in debian/tmp/usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6 Installing executable phybin in debian/tmp/usr/bin dh_haskell_install_ghc_registration dh_haskell_install_development_libs @@ -1950,12 +1678,12 @@ dh_haskell_extra_depends_ghc Running cp phybin-0.3.conf debian/tmp-db Running Setup.hs ... -Running: /usr/bin/ghc --abi-hash -fbuilding-cabal-package -O -outputdir dist-ghc/build -odir dist-ghc/build -hidir dist-ghc/build -stubdir dist-ghc/build -i -idist-ghc/build -i. -idist-ghc/build/autogen -idist-ghc/build/global-autogen -Idist-ghc/build/autogen -Idist-ghc/build/global-autogen -Idist-ghc/build -optP-DUSE_HASHRF -optP-include -optPdist-ghc/build/autogen/cabal_macros.h -this-unit-id phybin-0.3-DGbongSi2iE1W6bCmnoB0E -hide-all-packages -Wmissing-home-modules -no-user-package-db -package-db /var/lib/ghc/package.conf.d -package-db dist-ghc/package.conf.inplace -package-id HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX -package-id async-2.2.5-GwkBUQRsnGI18fyHYiVZaH -package-id base-4.18.2.1 -package-id bytestring-0.11.5.3 -package-id containers-0.6.7 -package-id directory-1.3.8.5 -package-id fgl-5.8.3.0-VKMas29N2lHUhyTZ6ovEn -package-id filepath-1.4.300.1 -package-id graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB -package-id hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ -package-id parsec-3.1.16.1 -package-id prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi -package-id process-1.6.19.0 -package-id split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG -package-id text-2.0.2 -package-id time-1.12.2 -package-id vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL -XHaskell98 Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize -O2 -funbox-strict-fields -rtsopts -optl-Wl,-z,relro +Running: /usr/bin/ghc --abi-hash -fbuilding-cabal-package -O -outputdir dist-ghc/build -odir dist-ghc/build -hidir dist-ghc/build -stubdir dist-ghc/build -i -idist-ghc/build -i. -idist-ghc/build/autogen -idist-ghc/build/global-autogen -Idist-ghc/build/autogen -Idist-ghc/build/global-autogen -Idist-ghc/build -optP-DUSE_HASHRF -optP-include -optPdist-ghc/build/autogen/cabal_macros.h -this-unit-id phybin-0.3-38zpnR60toC2XUBvfmYKH6 -hide-all-packages -Wmissing-home-modules -no-user-package-db -package-db /var/lib/ghc/package.conf.d -package-db dist-ghc/package.conf.inplace -package-id HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX -package-id async-2.2.5-GwkBUQRsnGI18fyHYiVZaH -package-id base-4.18.2.1 -package-id bytestring-0.11.5.3 -package-id containers-0.6.7 -package-id directory-1.3.8.5 -package-id fgl-5.8.3.0-VKMas29N2lHUhyTZ6ovEn -package-id filepath-1.4.300.1 -package-id graphviz-2999.20.2.0-JKUYtUkvYwE3GbOspxTTfB -package-id hierarchical-clustering-0.4.7-CqgN4L8lpoq1MEVMy9TmaQ -package-id parsec-3.1.16.1 -package-id prettyclass-1.0.0.0-CJIB8xkqXGeKrQHf6t0hpi -package-id process-1.6.19.0 -package-id split-0.2.5-ASm9S4CWxpg5KjSJ1ec3hG -package-id text-2.0.2 -package-id time-1.12.2 -package-id vector-0.13.1.0-Jdel1KiNlSEIXGg2MpN3IL -XHaskell98 Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning Bio.Phylogeny.PhyBin.CoreTypes Bio.Phylogeny.PhyBin.Parser Bio.Phylogeny.PhyBin.PreProcessor Bio.Phylogeny.PhyBin.RFDistance Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize -O2 -funbox-strict-fields -rtsopts -optl-Wl,-z,relro name: phybin version: 0.3 visibility: public -id: phybin-0.3-DGbongSi2iE1W6bCmnoB0E -key: phybin-0.3-DGbongSi2iE1W6bCmnoB0E +id: phybin-0.3-38zpnR60toC2XUBvfmYKH6 +key: phybin-0.3-38zpnR60toC2XUBvfmYKH6 license: BSD-3-Clause copyright: Copyright (c) 2010 Ryan Newton maintainer: Ryan Newton @@ -1975,7 +1703,7 @@ generating GraphViz-based visual representations of the tree topologies). category: Bioinformatics -abi: ba47465be4bf0ed9971e69be1ae71892 +abi: d7382d250820c8d83218a061ffa04267 exposed: True exposed-modules: Bio.Phylogeny.PhyBin Bio.Phylogeny.PhyBin.Binning @@ -1984,17 +1712,17 @@ Bio.Phylogeny.PhyBin.Util Bio.Phylogeny.PhyBin.Visualize import-dirs: - /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E + /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6 library-dirs: - /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E + /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6 library-dirs-static: - /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E + /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6 dynamic-library-dirs: /usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6 data-dir: /usr/share/phybin -hs-libraries: HSphybin-0.3-DGbongSi2iE1W6bCmnoB0E +hs-libraries: HSphybin-0.3-38zpnR60toC2XUBvfmYKH6 depends: HUnit-1.6.2.0-CZjLnnPcVf0JAQaorPJivX async-2.2.5-GwkBUQRsnGI18fyHYiVZaH base-4.18.2.1 @@ -2037,24 +1765,24 @@ dh_missing --list-missing dh_missing: warning: usr/bin/phybin exists in debian/tmp but is not installed to anywhere (related file: "dist-ghc/build/phybin/phybin") dh_missing: warning: usr/lib/ghc-doc/haddock/phybin-0.3/phybin.haddock exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/libHSphybin-0.3-DGbongSi2iE1W6bCmnoB0E-ghc9.6.6.so exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Binning.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Binning.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/CoreTypes.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/CoreTypes.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Parser.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Parser.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/PreProcessor.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/PreProcessor.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/RFDistance.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/RFDistance.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Util.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Util.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Visualize.dyn_hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/Bio/Phylogeny/PhyBin/Visualize.hi exists in debian/tmp but is not installed to anywhere -dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-DGbongSi2iE1W6bCmnoB0E/libHSphybin-0.3-DGbongSi2iE1W6bCmnoB0E.a exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/libHSphybin-0.3-38zpnR60toC2XUBvfmYKH6-ghc9.6.6.so exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Binning.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Binning.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/CoreTypes.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/CoreTypes.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Parser.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Parser.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/PreProcessor.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/PreProcessor.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/RFDistance.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/RFDistance.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Util.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Util.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Visualize.dyn_hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/Bio/Phylogeny/PhyBin/Visualize.hi exists in debian/tmp but is not installed to anywhere +dh_missing: warning: usr/lib/haskell-packages/ghc/lib/x86_64-linux-ghc-9.6.6/phybin-0.3-38zpnR60toC2XUBvfmYKH6/libHSphybin-0.3-38zpnR60toC2XUBvfmYKH6.a exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/libghc-phybin-doc/html/Bio-Phylogeny-PhyBin-Binning.html exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/libghc-phybin-doc/html/Bio-Phylogeny-PhyBin-CoreTypes.html exists in debian/tmp but is not installed to anywhere dh_missing: warning: usr/share/doc/libghc-phybin-doc/html/Bio-Phylogeny-PhyBin-Parser.html exists in debian/tmp but is not installed to anywhere @@ -2136,12 +1864,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1744538/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1795309 and its subdirectories -I: Current time: Wed Nov 5 13:36:05 -12 2025 -I: pbuilder-time-stamp: 1762392965 +I: removing directory /srv/workspace/pbuilder/1744538 and its subdirectories +I: Current time: Wed Jan 12 04:24:42 +14 2028 +I: pbuilder-time-stamp: 1831213482