Diff of the two buildlogs: -- --- b1/build.log 2025-09-04 01:06:53.849349286 +0000 +++ b2/build.log 2025-09-04 01:11:13.173658449 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Oct 6 19:10:15 -12 2026 -I: pbuilder-time-stamp: 1791357015 +I: Current time: Thu Sep 4 15:07:01 +14 2025 +I: pbuilder-time-stamp: 1756948021 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -31,53 +31,85 @@ dpkg-source: info: applying pr1452.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2599612/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 4 01:07 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='be1c62f31a654b6b9ed21e461f0e0155' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2599612' - PS1='# ' - PS2='> ' + INVOCATION_ID=9708a549701445ae91acd57a7f4da57b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2648909 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.54HGiQD0/pbuilderrc_6a4J --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.54HGiQD0/b1 --logfile b1/build.log python-cobra_0.29.1-3.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.54HGiQD0/pbuilderrc_a51I --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.54HGiQD0/b2 --logfile b2/build.log python-cobra_0.29.1-3.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2599612/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -393,7 +425,7 @@ Get: 224 http://deb.debian.org/debian forky/main amd64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 225 http://deb.debian.org/debian forky/main amd64 python3-sbml5 amd64 5.20.4+dfsg-0.1+b1 [3431 kB] Get: 226 http://deb.debian.org/debian forky/main amd64 python3-tabulate all 0.9.0-1 [45.9 kB] -Fetched 162 MB in 8s (20.3 MB/s) +Fetched 162 MB in 2s (93.4 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -1119,8 +1151,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Oct 7 07:15:26 UTC 2026. -Universal Time is now: Wed Oct 7 07:15:26 UTC 2026. +Local time is now: Thu Sep 4 01:07:53 UTC 2025. +Universal Time is now: Thu Sep 4 01:07:53 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1338,7 +1370,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-3 dpkg-buildpackage: info: source distribution unstable @@ -1416,88 +1452,88 @@ creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra copying src/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra copying src/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io -copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling +copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core copying src/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -copying src/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary -copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +copying src/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +copying src/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util +copying src/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation copying src/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis -copying src/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis +copying src/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +copying src/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +copying src/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary +creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium +copying src/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium creating /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web -copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web +copying src/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web +copying src/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web copying src/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data -copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data +copying src/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data copying src/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build; python3.13 -m pytest tests @@ -1506,7 +1542,7 @@ benchmark: 5.1.0 (defaults: timer=time.perf_counter disable_gc=False min_rounds=5 min_time=0.000005 max_time=1.0 calibration_precision=10 warmup=False warmup_iterations=100000) rootdir: /build/reproducible-path/python-cobra-0.29.1 configfile: tox.ini -plugins: anyio-4.8.0, mock-3.14.1, benchmark-5.1.0, typeguard-4.4.4 +plugins: typeguard-4.4.4, anyio-4.8.0, mock-3.14.1, benchmark-5.1.0 collected 554 items tests/test_core/test_configuration.py ...... [ 1%] @@ -1750,46 +1786,46 @@ -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html --------------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests --------------------------------------------------------------------------------------------------------------------------- -Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[gurobi] 4.3141 (1.0) 33.4429 (1.0) 5.5465 (1.0) 1.3092 (1.0) 5.4070 (1.0) 0.3950 (1.37) 36;91 180,293.0060 (1.0) 2324 1 -test_subtract_metabolite_benchmark[cplex] 4.4981 (1.04) 44.2411 (1.32) 5.7613 (1.04) 1.6469 (1.26) 5.5779 (1.03) 0.2880 (1.0) 35;138 173,571.7978 (0.96) 2402 1 -test_subtract_metabolite_benchmark[glpk] 4.5029 (1.04) 359.3371 (10.74) 6.0268 (1.09) 7.8950 (6.03) 5.6890 (1.05) 0.3879 (1.35) 22;119 165,925.0865 (0.92) 2418 1 -test_achr_sample_benchmark 464.2431 (107.61) 5,402.8300 (161.55) 1,133.8315 (204.42) 1,450.5427 (>1000.0) 556.8130 (102.98) 75.2381 (261.23) 26;36 881.9652 (0.00) 196 1 -test_change_objective_benchmark[optlang-glpk] 486.5029 (112.77) 12,278.0278 (367.13) 732.9016 (132.14) 675.4295 (515.91) 645.2251 (119.33) 28.6789 (99.58) 34;252 1,364.4396 (0.01) 1700 1 -test_optgp_sample_benchmark 556.5730 (129.01) 9,025.1521 (269.87) 1,065.9277 (192.18) 1,070.7167 (817.84) 775.3200 (143.39) 48.7718 (169.34) 47;119 938.1499 (0.01) 695 1 -test_loopless_benchmark_after 2,345.9811 (543.79) 3,249.5230 (97.17) 2,964.3995 (534.46) 125.6154 (95.95) 2,984.5671 (551.98) 101.6386 (352.90) 24;8 337.3364 (0.00) 153 1 -test_minimal_medium_mip_benchmark 9,299.8529 (>1000.0) 4,192,317.7210 (>1000.0) 123,236.8201 (>1000.0) 659,930.8754 (>1000.0) 15,000.9400 (>1000.0) 15,300.9265 (>1000.0) 1;1 8.1145 (0.00) 40 1 -test_loopless_benchmark_before 12,905.8771 (>1000.0) 31,040.1700 (928.16) 20,611.5035 (>1000.0) 8,397.6574 (>1000.0) 13,595.4944 (>1000.0) 17,444.6355 (>1000.0) 8;0 48.5166 (0.00) 24 1 -test_minimal_medium_linear_benchmark 14,542.1640 (>1000.0) 37,869.2870 (>1000.0) 24,462.7308 (>1000.0) 9,818.4137 (>1000.0) 24,951.6680 (>1000.0) 18,642.9757 (>1000.0) 5;0 40.8785 (0.00) 19 1 -test_copy_benchmark[optlang-glpk] 32,269.9600 (>1000.0) 2,952,881.0598 (>1000.0) 140,518.7597 (>1000.0) 522,681.9724 (>1000.0) 34,259.0839 (>1000.0) 26,540.5577 (>1000.0) 1;2 7.1165 (0.00) 31 1 -test_gpr_equality_benchmark 47,913.1332 (>1000.0) 4,464,659.5460 (>1000.0) 293,331.1620 (>1000.0) 1,010,452.2022 (>1000.0) 52,105.4310 (>1000.0) 1,057.9659 (>1000.0) 1;7 3.4091 (0.00) 19 1 -test_single_reaction_deletion_benchmark[glpk] 48,156.3581 (>1000.0) 105,063.9818 (>1000.0) 58,076.3373 (>1000.0) 15,067.1691 (>1000.0) 52,790.2311 (>1000.0) 1,801.4906 (>1000.0) 1;4 17.2187 (0.00) 13 1 -test_deepcopy_benchmark 54,277.8198 (>1000.0) 126,610.1210 (>1000.0) 73,074.4383 (>1000.0) 24,217.6414 (>1000.0) 62,476.9400 (>1000.0) 22,788.2791 (>1000.0) 4;3 13.6847 (0.00) 21 1 -test_add_metabolite_benchmark[gurobi] 131,564.0549 (>1000.0) 181,146.7970 (>1000.0) 153,988.6558 (>1000.0) 18,831.8475 (>1000.0) 151,782.0852 (>1000.0) 32,214.9518 (>1000.0) 4;0 6.4940 (0.00) 7 1 -test_add_metabolite_benchmark[cplex] 160,520.2272 (>1000.0) 4,410,515.3000 (>1000.0) 1,060,064.8789 (>1000.0) 1,874,288.9092 (>1000.0) 212,933.5210 (>1000.0) 1,185,550.6037 (>1000.0) 1;1 0.9433 (0.00) 5 1 -test_add_metabolite_benchmark[glpk] 168,604.6768 (>1000.0) 217,404.1241 (>1000.0) 178,984.4660 (>1000.0) 19,496.9909 (>1000.0) 168,904.9071 (>1000.0) 12,846.9327 (>1000.0) 1;1 5.5871 (0.00) 6 1 -test_gpr_symbolism_benchmark 236,303.0650 (>1000.0) 264,611.5089 (>1000.0) 251,066.3419 (>1000.0) 13,391.3418 (>1000.0) 255,134.9630 (>1000.0) 25,302.8784 (>1000.0) 3;0 3.9830 (0.00) 5 1 -test_fastcc_benchmark[glpk] 313,207.5400 (>1000.0) 4,558,950.7180 (>1000.0) 1,178,532.7816 (>1000.0) 1,889,811.1197 (>1000.0) 329,178.4939 (>1000.0) 1,091,174.9326 (>1000.0) 1;1 0.8485 (0.00) 5 1 -test_optgp_init_benchmark 325,140.9889 (>1000.0) 678,437.2369 (>1000.0) 453,181.9340 (>1000.0) 133,422.4608 (>1000.0) 416,268.6442 (>1000.0) 119,985.7319 (>1000.0) 1;0 2.2066 (0.00) 5 1 -test_double_gene_deletion_benchmark 390,570.5980 (>1000.0) 947,573.9270 (>1000.0) 594,843.0764 (>1000.0) 229,736.5777 (>1000.0) 550,387.9860 (>1000.0) 344,878.5822 (>1000.0) 1;0 1.6811 (0.00) 5 1 -test_achr_init_benchmark 419,169.1310 (>1000.0) 5,704,254.6100 (>1000.0) 1,486,147.3730 (>1000.0) 2,358,066.2066 (>1000.0) 423,274.8130 (>1000.0) 1,353,585.1264 (>1000.0) 1;1 0.6729 (0.00) 5 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 470,687.2469 (>1000.0) 4,593,211.4089 (>1000.0) 1,401,436.8584 (>1000.0) 1,787,199.1003 (>1000.0) 679,264.8921 (>1000.0) 1,169,071.7391 (>1000.0) 1;1 0.7136 (0.00) 5 1 -test_flux_variability_loopless_benchmark[glpk] 477,024.7771 (>1000.0) 593,145.6829 (>1000.0) 550,694.9508 (>1000.0) 47,123.0555 (>1000.0) 550,205.3809 (>1000.0) 64,998.9611 (>1000.0) 1;0 1.8159 (0.00) 5 1 -test_pfba_benchmark[glpk] 539,476.2291 (>1000.0) 1,503,871.7031 (>1000.0) 847,760.7598 (>1000.0) 400,388.0136 (>1000.0) 721,982.2709 (>1000.0) 532,053.3539 (>1000.0) 1;0 1.1796 (0.00) 5 1 -test_single_gene_deletion_fba_benchmark[glpk] 628,457.6331 (>1000.0) 4,270,433.1588 (>1000.0) 1,564,759.3838 (>1000.0) 1,547,236.1387 (>1000.0) 807,944.9970 (>1000.0) 1,484,645.8287 (>1000.0) 1;0 0.6391 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 686,414.9470 (>1000.0) 5,248,858.4020 (>1000.0) 2,124,433.0239 (>1000.0) 1,952,110.3218 (>1000.0) 1,118,757.8752 (>1000.0) 2,703,035.0371 (>1000.0) 1;0 0.4707 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 787,108.7410 (>1000.0) 6,562,525.6849 (>1000.0) 2,105,158.9152 (>1000.0) 2,508,367.2226 (>1000.0) 881,757.2440 (>1000.0) 1,952,720.3258 (>1000.0) 1;1 0.4750 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 987,852.6800 (>1000.0) 5,032,040.6491 (>1000.0) 1,900,497.0381 (>1000.0) 1,755,229.0900 (>1000.0) 1,113,306.8560 (>1000.0) 1,221,228.2710 (>1000.0) 1;1 0.5262 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 991,798.7080 (>1000.0) 5,512,401.0800 (>1000.0) 2,980,355.7312 (>1000.0) 2,281,102.0234 (>1000.0) 1,560,453.9979 (>1000.0) 4,139,122.5369 (>1000.0) 2;0 0.3355 (0.00) 5 1 -test_double_reaction_deletion_benchmark 1,463,808.5798 (>1000.0) 4,357,596.8810 (>1000.0) 2,102,956.6782 (>1000.0) 1,261,924.8808 (>1000.0) 1,555,626.8040 (>1000.0) 817,419.5134 (>1000.0) 1;1 0.4755 (0.00) 5 1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +-------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests --------------------------------------------------------------------------------------------------------------------- +Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations +-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- +test_subtract_metabolite_benchmark[cplex] 2.5071 (1.0) 26.9602 (1.02) 2.6491 (1.01) 0.5908 (1.11) 2.6219 (1.01) 0.0468 (1.20) 12;124 377,479.6390 (0.99) 5238 1 +test_subtract_metabolite_benchmark[gurobi] 2.5101 (1.00) 26.3632 (1.0) 2.6208 (1.0) 0.5336 (1.0) 2.5982 (1.0) 0.0391 (1.0) 12;125 381,564.3011 (1.0) 4779 1 +test_subtract_metabolite_benchmark[glpk] 2.5269 (1.01) 37.8899 (1.44) 2.6711 (1.02) 0.7708 (1.44) 2.6389 (1.02) 0.0498 (1.27) 13;115 374,376.3705 (0.98) 5195 1 +test_achr_sample_benchmark 270.6980 (107.97) 397.0531 (15.06) 281.2258 (107.31) 12.4514 (23.33) 277.0659 (106.64) 3.9858 (101.90) 115;179 3,555.8617 (0.01) 1145 1 +test_change_objective_benchmark[optlang-glpk] 343.2510 (136.91) 1,415.7370 (53.70) 359.5283 (137.18) 29.0888 (54.51) 351.5410 (135.30) 11.8643 (303.31) 187;293 2,781.4222 (0.01) 3345 1 +test_optgp_sample_benchmark 404.4569 (161.32) 598.7270 (22.71) 415.9215 (158.70) 14.1048 (26.43) 410.9060 (158.15) 5.3457 (136.66) 166;222 2,404.2996 (0.01) 1387 1 +test_loopless_benchmark_after 1,625.6741 (648.42) 1,884.6982 (71.49) 1,658.5168 (632.83) 32.6150 (61.12) 1,651.9545 (635.82) 34.1439 (872.90) 34;16 602.9484 (0.00) 298 1 +test_loopless_benchmark_before 6,611.6729 (>1000.0) 7,211.1571 (273.53) 6,720.6864 (>1000.0) 73.9385 (138.55) 6,707.0116 (>1000.0) 53.1329 (>1000.0) 14;8 148.7943 (0.00) 102 1 +test_minimal_medium_mip_benchmark 8,203.7500 (>1000.0) 8,752.5609 (332.00) 8,301.0367 (>1000.0) 97.9201 (183.49) 8,273.0269 (>1000.0) 71.9532 (>1000.0) 6;5 120.4669 (0.00) 75 1 +test_minimal_medium_linear_benchmark 8,372.6400 (>1000.0) 8,752.8820 (332.01) 8,455.7318 (>1000.0) 63.7065 (119.38) 8,446.2359 (>1000.0) 66.1347 (>1000.0) 12;4 118.2630 (0.00) 75 1 +test_copy_benchmark[optlang-glpk] 14,942.0460 (>1000.0) 24,054.9410 (912.44) 16,783.1079 (>1000.0) 2,205.8178 (>1000.0) 15,970.9870 (>1000.0) 1,101.5597 (>1000.0) 11;11 59.5837 (0.00) 65 1 +test_gpr_equality_benchmark 25,490.2400 (>1000.0) 26,575.0261 (>1000.0) 25,701.5998 (>1000.0) 202.2346 (378.97) 25,663.3640 (>1000.0) 170.8812 (>1000.0) 6;3 38.9081 (0.00) 37 1 +test_deepcopy_benchmark 25,790.8250 (>1000.0) 36,112.8091 (>1000.0) 28,178.2583 (>1000.0) 2,301.6221 (>1000.0) 27,349.7622 (>1000.0) 1,747.4843 (>1000.0) 9;6 35.4884 (0.00) 37 1 +test_single_reaction_deletion_benchmark[glpk] 31,663.7149 (>1000.0) 32,763.8232 (>1000.0) 31,910.0293 (>1000.0) 268.7616 (503.63) 31,794.5685 (>1000.0) 357.3578 (>1000.0) 6;1 31.3381 (0.00) 30 1 +test_fastcc_benchmark[glpk] 69,016.3129 (>1000.0) 80,182.0608 (>1000.0) 71,665.4400 (>1000.0) 3,574.7181 (>1000.0) 70,348.5435 (>1000.0) 1,036.4188 (>1000.0) 2;2 13.9537 (0.00) 14 1 +test_add_metabolite_benchmark[gurobi] 80,283.5482 (>1000.0) 165,622.8460 (>1000.0) 103,733.1953 (>1000.0) 35,279.8414 (>1000.0) 87,201.1459 (>1000.0) 32,554.9762 (>1000.0) 3;3 9.6401 (0.00) 13 1 +test_add_metabolite_benchmark[cplex] 80,403.9561 (>1000.0) 85,649.6200 (>1000.0) 81,499.9071 (>1000.0) 1,349.8169 (>1000.0) 81,222.9789 (>1000.0) 765.4151 (>1000.0) 1;1 12.2700 (0.00) 13 1 +test_add_metabolite_benchmark[glpk] 81,121.5490 (>1000.0) 81,791.4959 (>1000.0) 81,440.4822 (>1000.0) 247.5190 (463.83) 81,393.5469 (>1000.0) 537.3810 (>1000.0) 6;0 12.2789 (0.00) 13 1 +test_gpr_symbolism_benchmark 111,966.4600 (>1000.0) 116,462.1520 (>1000.0) 113,585.8482 (>1000.0) 1,486.5418 (>1000.0) 113,015.6280 (>1000.0) 2,235.5464 (>1000.0) 2;0 8.8039 (0.00) 9 1 +test_optgp_init_benchmark 136,321.6881 (>1000.0) 144,865.8120 (>1000.0) 139,753.3311 (>1000.0) 3,185.0152 (>1000.0) 139,128.9815 (>1000.0) 5,320.1530 (>1000.0) 4;0 7.1555 (0.00) 8 1 +test_achr_init_benchmark 136,350.0080 (>1000.0) 724,310.7411 (>1000.0) 222,234.5634 (>1000.0) 221,403.1350 (>1000.0) 138,690.8200 (>1000.0) 4,320.2118 (>1000.0) 1;1 4.4998 (0.00) 7 1 +test_single_gene_deletion_fba_benchmark[glpk] 137,749.5991 (>1000.0) 145,531.0031 (>1000.0) 141,024.5750 (>1000.0) 2,409.4824 (>1000.0) 140,752.8219 (>1000.0) 1,942.9013 (>1000.0) 2;1 7.0910 (0.00) 7 1 +test_flux_variability_loopless_benchmark[glpk] 156,084.1240 (>1000.0) 174,684.3799 (>1000.0) 165,512.0144 (>1000.0) 6,996.2457 (>1000.0) 166,762.3180 (>1000.0) 11,910.4552 (>1000.0) 3;0 6.0419 (0.00) 7 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 224,681.5760 (>1000.0) 228,669.3691 (>1000.0) 225,911.6238 (>1000.0) 1,637.5806 (>1000.0) 225,186.2120 (>1000.0) 1,921.8843 (>1000.0) 1;0 4.4265 (0.00) 5 1 +test_double_gene_deletion_benchmark 248,149.7161 (>1000.0) 252,487.2129 (>1000.0) 250,142.0584 (>1000.0) 1,894.4274 (>1000.0) 249,807.9010 (>1000.0) 3,401.9612 (>1000.0) 2;0 3.9977 (0.00) 5 1 +test_pfba_benchmark[glpk] 300,245.3181 (>1000.0) 602,976.0649 (>1000.0) 361,137.7740 (>1000.0) 135,192.1835 (>1000.0) 300,777.8111 (>1000.0) 76,217.6856 (>1000.0) 1;1 2.7690 (0.00) 5 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 322,005.0531 (>1000.0) 327,367.3072 (>1000.0) 325,058.2919 (>1000.0) 2,421.1619 (>1000.0) 326,393.3291 (>1000.0) 4,114.0277 (>1000.0) 1;0 3.0764 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 362,515.9930 (>1000.0) 803,316.2742 (>1000.0) 526,671.2194 (>1000.0) 222,813.7038 (>1000.0) 369,536.2459 (>1000.0) 389,652.0576 (>1000.0) 1;0 1.8987 (0.00) 5 1 +test_double_reaction_deletion_benchmark 400,700.6830 (>1000.0) 432,294.6991 (>1000.0) 411,244.9402 (>1000.0) 12,396.8233 (>1000.0) 406,549.4961 (>1000.0) 12,819.5129 (>1000.0) 1;0 2.4316 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 440,530.3800 (>1000.0) 444,385.7740 (>1000.0) 441,970.1765 (>1000.0) 1,505.1716 (>1000.0) 442,005.9680 (>1000.0) 1,813.1057 (>1000.0) 1;0 2.2626 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 498,690.1709 (>1000.0) 510,599.7811 (>1000.0) 503,174.4832 (>1000.0) 4,871.3146 (>1000.0) 501,482.0350 (>1000.0) 7,224.1402 (>1000.0) 1;0 1.9874 (0.00) 5 1 +-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 569.73s (0:09:29) ==== +==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 136.26s (0:02:16) ==== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1827,238 +1863,238 @@ running build_py running install_lib creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/.benchmarks creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/context.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/array.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/process_pool.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/solver.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/dict.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/sbml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/yaml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/mat.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/load.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/achr.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/optgp.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/sampling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/core.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/dictlist.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/configuration.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/formula.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/gene.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/dictlist.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/object.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/singleton.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/model.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/solution.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/metabolite.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/group.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/gene.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/species.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/solution.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/dictlist.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/configuration.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/configuration.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/group.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__pycache__/formula.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/group.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/species.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/metabolite.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/formula.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/model.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/solution.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/gene.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/singleton.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/core/object.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/sampling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/hr_sampler.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/optgp.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/sampling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/achr.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__pycache__/core.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/achr.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/optgp.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/core.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/hr_sampler.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/sampling/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/annotations.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/json.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/yaml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/mat.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/abstract_model_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/cobrapy_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/bigg_models_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/biomodels_repository.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/load.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/bigg_models_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/abstract_model_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/load.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/biomodels_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/cobrapy_repository.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/web/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/yaml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/json.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/sbml.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/dict.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/__pycache__/mat.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/schema_v1.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/sbml.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/io/dict.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/exceptions.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__pycache__ +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.mat -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.yml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/salmonella.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/textbook.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini.json -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/mini_cobra.xml -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/data/iJO1366.xml.gz -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/array.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/solver.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/solver.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/array.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/util.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/context.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/__pycache__/process_pool.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/util.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/context.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/util/process_pool.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/modify.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/delete.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/metabolite_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/reaction_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/model_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/metabolite_summary.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__pycache__ copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/model_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/summary/reaction_summary.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/modify.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/delete.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/validate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__pycache__/annotate.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/delete.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/annotate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/validate.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/manipulation/modify.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/annotations.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/minimal_medium.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/annotations.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/boundary_types.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/minimal_medium.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__pycache__ +copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/medium/boundary_types.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/exceptions.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/moma.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/deletion.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/parsimonious.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/helpers.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/fastcc.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/loopless.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/gapfilling.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/variability.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/phenotype_phase_plane.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/room.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/reaction.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__pycache__/geometric.cpython-313.pyc -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__pycache__ -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/room.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/fastcc.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/loopless.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/parsimonious.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/deletion.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/geometric.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/phenotype_phase_plane.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/__init__.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/gapfilling.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/helpers.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/reaction.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/variability.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -copying /build/reproducible-path/python-cobra-0.29.1/.pybuild/cpython3_3.13_cobra/build/cobra/flux_analysis/moma.py -> /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/array.py to array.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/process_pool.py to process_pool.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/context.py to context.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/solver.py to solver.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/util.py to util.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/dict.py to dict.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/sbml.py to sbml.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/load.py to load.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/json.py to json.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/yaml.py to yaml.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/mat.py to mat.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/group.py to group.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/dictlist.py to dictlist.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/configuration.py to configuration.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/species.py to species.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/metabolite.py to metabolite.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/formula.py to formula.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/model.py to model.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/solution.py to solution.cpython-313.pyc +creating /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/.benchmarks +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/room.py to room.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/sampling.py to sampling.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/core.py to core.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/achr.py to achr.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/optgp.py to optgp.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/gene.py to gene.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/singleton.py to singleton.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/reaction.py to reaction.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/model.py to model.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/dictlist.py to dictlist.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/solution.py to solution.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/formula.py to formula.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/configuration.py to configuration.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/metabolite.py to metabolite.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/object.py to object.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/sampling.py to sampling.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/achr.py to achr.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/optgp.py to optgp.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/core.py to core.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/hr_sampler.py to hr_sampler.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/sampling/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/annotations.py to annotations.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/summary.py to summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/delete.py to delete.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/group.py to group.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/species.py to species.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/core/reaction.py to reaction.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/json.py to json.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/yaml.py to yaml.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/mat.py to mat.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/abstract_model_repository.py to abstract_model_repository.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/cobrapy_repository.py to cobrapy_repository.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/bigg_models_repository.py to bigg_models_repository.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/biomodels_repository.py to biomodels_repository.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/web/load.py to load.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/sbml.py to sbml.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/io/dict.py to dict.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/data/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/array.py to array.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/solver.py to solver.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/util.py to util.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/context.py to context.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/util/process_pool.py to process_pool.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/validate.py to validate.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/modify.py to modify.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/delete.py to delete.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/manipulation/annotate.py to annotate.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/metabolite_summary.py to metabolite_summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/summary.py to summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/reaction_summary.py to reaction_summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/summary/model_summary.py to model_summary.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/annotations.py to annotations.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/minimal_medium.py to minimal_medium.cpython-313.pyc +byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/medium/boundary_types.py to boundary_types.cpython-313.pyc byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/exceptions.py to exceptions.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/room.py to room.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/fastcc.py to fastcc.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/loopless.py to loopless.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/parsimonious.py to parsimonious.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/deletion.py to deletion.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/geometric.py to geometric.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/phenotype_phase_plane.py to phenotype_phase_plane.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/gapfilling.py to gapfilling.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/helpers.py to helpers.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/reaction.py to reaction.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/variability.py to variability.cpython-313.pyc -byte-compiling /build/reproducible-path/python-cobra-0.29.1/debian/python3-cobra/usr/lib/python3.13/dist-packages/cobra/flux_analysis/moma.py to moma.cpython-313.pyc running install_egg_info running egg_info creating src/cobra.egg-info @@ -2101,8 +2137,8 @@ dpkg-gencontrol: warning: Depends field of package python3-cobra: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-3_all.deb'. dpkg-deb: building package 'python3-cobra' in '../python3-cobra_0.29.1-3_amd64.deb'. +dpkg-deb: building package 'python-cobra-data' in '../python-cobra-data_0.29.1-3_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cobra_0.29.1-3_amd64.buildinfo dpkg-genchanges --build=binary -O../python-cobra_0.29.1-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2110,12 +2146,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2648909/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2599612 and its subdirectories -I: Current time: Tue Oct 6 19:29:43 -12 2026 -I: pbuilder-time-stamp: 1791358183 +I: removing directory /srv/workspace/pbuilder/2648909 and its subdirectories +I: Current time: Thu Sep 4 15:11:12 +14 2025 +I: pbuilder-time-stamp: 1756948272