Diff of the two buildlogs: -- --- b1/build.log 2025-09-12 05:27:51.849675070 +0000 +++ b2/build.log 2025-09-12 05:32:24.182019187 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Oct 14 23:47:20 -12 2026 -I: pbuilder-time-stamp: 1792064840 +I: Current time: Fri Sep 12 19:27:53 +14 2025 +I: pbuilder-time-stamp: 1757654873 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying numpy2.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1600622/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 12 05:28 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9f4ad53c3d20466085cf047daae7bdc3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1600622' - PS1='# ' - PS2='> ' + INVOCATION_ID=e55a7ac5a068434a855c01f4f43652a3 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=149717 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OLEQfSGW/pbuilderrc_ey9y --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OLEQfSGW/b1 --logfile b1/build.log python-pbcore_2.1.2+dfsg-12.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OLEQfSGW/pbuilderrc_Dgv0 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OLEQfSGW/b2 --logfile b2/build.log python-pbcore_2.1.2+dfsg-12.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1600622/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -347,7 +379,7 @@ Get: 199 http://deb.debian.org/debian forky/main amd64 sphinx-common all 8.2.3-6 [619 kB] Get: 200 http://deb.debian.org/debian forky/main amd64 python3-sphinx all 8.2.3-6 [477 kB] Get: 201 http://deb.debian.org/debian forky/main amd64 python3-xmlschema all 4.1.0-1 [262 kB] -Fetched 85.6 MB in 1s (79.7 MB/s) +Fetched 85.6 MB in 1s (83.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21054 files and directories currently installed.) @@ -1005,8 +1037,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Oct 15 11:48:37 UTC 2026. -Universal Time is now: Thu Oct 15 11:48:37 UTC 2026. +Local time is now: Fri Sep 12 05:30:43 UTC 2025. +Universal Time is now: Fri Sep 12 05:30:43 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... @@ -1198,7 +1230,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-12_source.changes +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-12_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 2.1.2+dfsg-12 dpkg-buildpackage: info: source distribution unstable @@ -1216,8 +1252,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1234,8 +1270,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1274,8 +1310,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1292,8 +1328,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1310,8 +1346,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1328,8 +1364,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1339,53 +1375,53 @@ running build running build_py creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore -copying pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore copying pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore +copying pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry copying pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry copying pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data -copying pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io -copying pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io copying pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io +copying pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io copying pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io -copying pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io copying pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io +copying pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io +copying pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io copying pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io copying pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io -copying pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io -copying pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model -copying pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model -copying pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model +copying pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util -copying pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util copying pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util -copying pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util copying pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets -copying pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets +copying pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util +copying pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model +copying pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model +copying pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data +copying pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset -copying pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset copying pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset +copying pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align -copying pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align -copying pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align -copying pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align -copying pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align -copying pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align copying pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align +copying pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align +copying pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align copying pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align +copying pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align +copying pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align +copying pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets +copying pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets running egg_info creating pbcore.egg-info writing pbcore.egg-info/PKG-INFO @@ -1556,8 +1592,8 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/_build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/_build/html/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/_build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/_build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/_build/html/_static/sidebar.js Writing evaluated template result to /build/reproducible-path/python-pbcore-2.1.2+dfsg/doc/_build/html/_static/classic.css @@ -1604,292 +1640,292 @@ cachedir: .pytest_cache rootdir: /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build configfile: pytest.ini -plugins: cov-5.0.0, xdist-3.8.0, typeguard-4.4.4 -created: 16/16 workers -16 workers [140 items] +plugins: xdist-3.8.0, cov-5.0.0, typeguard-4.4.4 +created: 12/12 workers +12 workers [140 items] scheduling tests via LoadScopeScheduling tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -[gw7] [ 0%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -tests/test_pbdataset_split.py::TestDataSetSplit::test_split -tests/test_pbcore_io_BlasrIO.py::test_m4 -[gw7] [ 1%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -tests/test_pbcore_io_FofnIO.py::test_simple -[gw13] [ 2%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple -[gw4] [ 2%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -tests/test_pbcore_io_FofnIO.py::test_empty_lines -[gw7] [ 3%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw11] [ 4%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -[gw11] [ 5%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw6] [ 0%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +[gw4] [ 1%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -[gw4] [ 5%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +[gw4] [ 2%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -[gw4] [ 6%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -[gw15] [ 7%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 -tests/test_pbcore_io_BlasrIO.py::test_m5 -[gw15] [ 7%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw15] [ 8%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw8] [ 9%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -[gw8] [ 10%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -[gw9] [ 10%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -[gw3] [ 11%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -[gw3] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString -[gw3] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -[gw3] [ 13%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -[gw3] [ 14%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -[gw6] [ 15%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +[gw4] [ 2%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 +[gw4] [ 3%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement -[gw6] [ 15%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +[gw6] [ 4%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -[gw6] [ 16%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement +[gw6] [ 5%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac -[gw6] [ 17%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +[gw6] [ 5%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -[gw6] [ 17%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -[gw13] [ 18%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -[gw4] [ 19%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -[gw4] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -[gw4] [ 20%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -[gw4] [ 21%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw6] [ 6%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error +tests/test_pbdataset_split.py::TestDataSetSplit::test_split +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +[gw9] [ 7%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +[gw9] [ 7%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw8] [ 22%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw14] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -[gw14] [ 23%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw14] [ 24%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw2] [ 25%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -[gw12] [ 25%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -[gw12] [ 26%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw12] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw3] [ 27%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw3] [ 28%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw10] [ 29%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -[gw10] [ 30%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw10] [ 30%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw5] [ 31%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +[gw9] [ 8%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +[gw5] [ 9%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -[gw5] [ 32%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +[gw5] [ 10%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -[gw5] [ 32%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +[gw5] [ 10%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -[gw5] [ 33%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +[gw5] [ 11%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -[gw5] [ 34%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice +[gw5] [ 12%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -[gw2] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -[gw2] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -[gw2] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -[gw9] [ 37%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw9] [ 37%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -[gw0] [ 38%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +[gw6] [ 12%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +tests/test_pbcore_io_FofnIO.py::test_simple +[gw8] [ 13%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +[gw2] [ 14%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +[gw2] [ 15%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +[gw2] [ 15%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 +[gw2] [ 16%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 +[gw2] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +[gw2] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +[gw1] [ 18%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation -[gw0] [ 39%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation +[gw1] [ 19%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName -[gw0] [ 40%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName +[gw7] [ 20%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +[gw7] [ 20%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw7] [ 21%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw2] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +[gw3] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +[gw11] [ 23%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw11] [ 24%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +[gw6] [ 25%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple +tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw6] [ 25%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw1] [ 26%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead -[gw0] [ 40%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +[gw4] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw4] [ 27%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw4] [ 28%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw3] [ 29%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +[gw5] [ 30%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +[gw1] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +[gw9] [ 31%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +[gw10] [ 32%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +[gw8] [ 32%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +[gw3] [ 33%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +[gw9] [ 34%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +[gw10] [ 35%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -[gw0] [ 41%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +[gw1] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -[gw0] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw3] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +[gw1] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -[gw7] [ 42%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -[gw7] [ 43%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -[gw5] [ 44%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -[gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw3] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw1] [ 38%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +[gw10] [ 39%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -[gw0] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +[gw8] [ 40%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +[gw5] [ 40%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -[gw2] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +[gw3] [ 41%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference -[gw2] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +[gw3] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +[gw1] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +[gw1] [ 43%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +[gw1] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -[gw11] [ 47%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +[gw7] [ 45%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get +tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges +[gw8] [ 45%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -[gw13] [ 48%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying -tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw13] [ 49%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw15] [ 50%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw11] [ 50%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -[gw2] [ 51%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +[gw8] [ 46%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +[gw4] [ 47%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +[gw3] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -[gw2] [ 52%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +[gw3] [ 48%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -[gw15] [ 52%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw2] [ 53%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw0] [ 54%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -[gw0] [ 55%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -[gw0] [ 55%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -[gw4] [ 56%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw6] [ 57%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw6] [ 57%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -[gw8] [ 58%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -tests/test_dataset_run_split.py::test -[gw4] [ 59%] SKIPPED tests/test_dataset_run_split.py::test -[gw14] [ 60%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -[gw8] [ 60%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -[gw3] [ 61%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +[gw2] [ 49%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbcore_io_BlasrIO.py::test_m4 +[gw2] [ 50%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 +tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw1] [ 62%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split -tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -[gw12] [ 62%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping -tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -[gw5] [ 63%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -[gw3] [ 64%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -[gw12] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping -tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw10] [ 65%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -[gw9] [ 66%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -[gw7] [ 67%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw10] [ 50%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +[gw10] [ 51%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +[gw6] [ 52%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw6] [ 52%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw11] [ 53%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +[gw11] [ 54%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 +[gw7] [ 55%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -[gw11] [ 67%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +[gw8] [ 55%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +tests/test_pbcore_io_BlasrIO.py::test_m5 +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta +[gw9] [ 56%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw9] [ 57%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw3] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +[gw5] [ 58%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +[gw5] [ 59%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +[gw5] [ 60%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +[gw2] [ 60%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 +tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -[gw15] [ 68%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw10] [ 61%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +[gw10] [ 62%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +[gw4] [ 62%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw4] [ 63%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +[gw6] [ 64%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +[gw7] [ 65%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta +tests/test_dataset_run_split.py::test +[gw7] [ 65%] SKIPPED tests/test_dataset_run_split.py::test tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -[gw13] [ 69%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +[gw6] [ 66%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +[gw11] [ 67%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw6] [ 70%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +[gw8] [ 67%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +[gw8] [ 68%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +[gw5] [ 69%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +[gw0] [ 70%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -[gw8] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -[gw12] [ 71%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -[gw3] [ 72%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -[gw2] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -[gw1] [ 73%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -[gw0] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +[gw10] [ 70%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +[gw2] [ 71%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +[gw4] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +[gw9] [ 72%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw2] [ 73%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +[gw1] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -[gw14] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -[gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -[gw0] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +[gw1] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry -[gw0] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry +[gw1] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion -[gw0] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +[gw1] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore -[gw0] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +[gw1] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default -[gw0] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default -[gw4] [ 81%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +[gw1] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw0] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw2] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +[gw1] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default +[gw3] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +[gw3] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry +[gw3] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV +[gw3] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +[gw0] [ 82%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw3] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts -[gw2] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts +[gw3] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName -[gw2] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName +[gw3] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam -[gw2] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam +[gw3] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -[gw2] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +[gw3] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw2] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw1] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw3] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +[gw0] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws -[gw1] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws +[gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws -[gw1] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws +[gw0] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters -[gw1] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters +[gw0] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters -[gw1] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters +[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split -[gw1] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split +[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references -[gw1] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references +[gw0] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter -[gw1] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter +[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit -[gw1] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit +[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -[gw1] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +[gw0] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -[gw1] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +[gw0] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -[gw1] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +[gw0] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split -[gw1] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split +[gw0] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -[gw1] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +[gw0] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -[gw1] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +[gw0] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded -[gw1] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded +[gw0] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases -[gw1] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases +[gw0] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks -[gw1] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks +[gw0] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups -[gw1] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups +[gw0] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== tests/test_pbcore_io_FastqIO.py: 11 warnings @@ -1937,27 +1973,27 @@ Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= -0.33s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -0.21s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -0.20s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -0.20s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -0.19s call tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -0.18s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -0.18s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -0.16s setup tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split -0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -0.07s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -0.03s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -0.03s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -0.03s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -0.03s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -0.02s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -0.02s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -================ 122 passed, 18 skipped, 461 warnings in 4.45s ================= +0.16s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +0.13s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +0.12s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +0.10s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +0.09s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +0.08s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +0.07s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split +0.07s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +0.03s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +0.02s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +0.02s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +0.02s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +0.02s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +0.02s setup tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +0.01s call tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +0.01s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +0.01s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +0.01s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +0.01s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +================ 122 passed, 18 skipped, 461 warnings in 2.61s ================= I: pybuild pybuild:334: rm -rfv /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/coverage.xml /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/nosetests.xml removed '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/coverage.xml' removed '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/nosetests.xml' @@ -1981,8 +2017,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1999,8 +2035,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -2078,220 +2114,220 @@ check.warn(importable) running install_lib creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/README.md -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.coverage -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry/chemistry.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/resources copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry/resources/mapping.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/resources +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry/__pycache__/chemistry.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/chemistry/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/__pycache__ -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetMembers.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetErrors.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/run_split.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetWriter.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetValidator.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetUtils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetMetaTypes.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetReader.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetValidator.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetUtils.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetWriter.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/DataSetIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/FofnIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/base.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/opener.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetErrors.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMetaTypes.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/run_split.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetReader.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/dataset/__pycache__/DataSetMembers.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/base.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/_utils.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/opener.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/VcfIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/GffIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/PacBioBamIndex.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/_AlignmentMixin.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/_BamSupport.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/BamAlignment.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/BlasrIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/_BamSupport.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/PacBioBamIndex.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/BamIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/_AlignmentMixin.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BlasrIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/_utils.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/FastqIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/FastaIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/FastqIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/_utils.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/FastaIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/opener.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/GffIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/FofnIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/VcfIO.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/__pycache__/base.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__pycache__ -creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamIO.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/statistics.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/decorators.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/ToolRunner.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/decorators.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/ToolRunner.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/statistics.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/ToolRunner.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/decorators.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__pycache__ +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model/baseRegions.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/model/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/variants.gff -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/barcodes-ed65-450.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/lambdaNEB.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/blasr-output.m4 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/Fluidigm_human_amplicons_tiny.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/weird.fa -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/chemistry.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/Fluidigm_human_amplicons.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/barcodes-ed65-450.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/ccsread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/subread.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/subreadSetWithStats.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/reference.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreadset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/barcode.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk1contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m150430_142051_Mon_p1_b25.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/fofn.fofn -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/lambda.referenceset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/contig.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.bai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.reference.fasta.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.fake_bc.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/empty_lambda.aligned.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/ccsaligned.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/alignment.dataset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.alignmentset.chunk0contigs.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim0.subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/pbalchemysim1.pbalign.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/m150616_053259_ethan_c100710482550000001823136404221563_s1_p0.sts.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/lambda.alignmentset.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/datasets/CollectionMetadata.xml -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/lambdaNEB.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty2.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/weird.fa.fai -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.scraps.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m130727_114215_42211_c100569412550000001823090301191423_s1_p0.ccs.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/blasr-output.m5 -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/__pycache__ +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty2.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.ccs.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/m140905_042212_sidney_c100564852550000001823085912221377_s1_X0.aligned_subreads.bam.pbi -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/data/empty.aligned_subreads.bam -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/__init__.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/sequence.py -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/__pycache__/sequence.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/__pycache__ copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/__pycache__ -copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.coverage -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/sequence.py to sequence.cpython-313.pyc +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v +creating /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache +copying /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/.pytest_cache/README.md -> /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/.pytest_cache byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/chemistry.py to chemistry.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/chemistry/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/base.py to base.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/opener.py to opener.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/_utils.py to _utils.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetMembers.py to DataSetMembers.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetErrors.py to DataSetErrors.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/run_split.py to run_split.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetWriter.py to DataSetWriter.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/utils.py to utils.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetValidator.py to DataSetValidator.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetUtils.py to DataSetUtils.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetMetaTypes.py to DataSetMetaTypes.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetIO.py to DataSetIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/FofnIO.py to FofnIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/base.py to base.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/opener.py to opener.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/dataset/DataSetReader.py to DataSetReader.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/VcfIO.py to VcfIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/GffIO.py to GffIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/BamAlignment.py to BamAlignment.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/PacBioBamIndex.py to PacBioBamIndex.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/_AlignmentMixin.py to _AlignmentMixin.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/BlasrIO.py to BlasrIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/_utils.py to _utils.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/FastqIO.py to FastqIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/FastaIO.py to FastaIO.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/decorators.py to decorators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/_BamSupport.py to _BamSupport.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/io/align/BamIO.py to BamIO.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/statistics.py to statistics.cpython-313.pyc -byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/decorators.py to decorators.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/util/ToolRunner.py to ToolRunner.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model/baseRegions.py to baseRegions.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/model/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/datasets/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/data/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore/sequence.py to sequence.cpython-313.pyc running install_egg_info Copying pbcore.egg-info to /build/reproducible-path/python-pbcore-2.1.2+dfsg/debian/python3-pbcore/usr/lib/python3.13/dist-packages/pbcore-2.2.0.egg-info Skipping SOURCES.txt @@ -2333,8 +2369,8 @@ dpkg-gencontrol: warning: package python-pbcore-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-pbcore' in '../python3-pbcore_2.1.2+dfsg-12_all.deb'. dpkg-deb: building package 'python-pbcore-doc' in '../python-pbcore-doc_2.1.2+dfsg-12_all.deb'. +dpkg-deb: building package 'python3-pbcore' in '../python3-pbcore_2.1.2+dfsg-12_all.deb'. dpkg-genbuildinfo --build=binary -O../python-pbcore_2.1.2+dfsg-12_amd64.buildinfo dpkg-genchanges --build=binary -O../python-pbcore_2.1.2+dfsg-12_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2342,12 +2378,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/149717/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1600622 and its subdirectories -I: Current time: Wed Oct 14 23:50:51 -12 2026 -I: pbuilder-time-stamp: 1792065051 +I: removing directory /srv/workspace/pbuilder/149717 and its subdirectories +I: Current time: Fri Sep 12 19:32:23 +14 2025 +I: pbuilder-time-stamp: 1757655143