Diff of the two buildlogs: -- --- b1/build.log 2025-08-29 23:30:10.943924934 +0000 +++ b2/build.log 2025-08-29 23:32:10.220068731 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Aug 29 11:26:31 -12 2025 -I: pbuilder-time-stamp: 1756509991 +I: Current time: Fri Oct 2 19:53:11 +14 2026 +I: pbuilder-time-stamp: 1790920391 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/931344/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 2 05:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f973dc49fc6448edbd6f8684f3ebab45' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='931344' - PS1='# ' - PS2='> ' + INVOCATION_ID=2e06034207574cb1a54c245f6483f5f4 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3944353 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.drDu2kpA/pbuilderrc_cEHs --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.drDu2kpA/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.drDu2kpA/pbuilderrc_Bmj6 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.drDu2kpA/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.41-1 (2025-08-12) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/931344/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 70 http://deb.debian.org/debian forky/main amd64 libspoa-dev amd64 4.1.4-2+b1 [9808 B] Get: 71 http://deb.debian.org/debian forky/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 72 http://deb.debian.org/debian forky/main amd64 rampler amd64 2.1.1-1 [21.2 kB] -Fetched 33.6 MB in 1s (37.9 MB/s) +Fetched 33.6 MB in 1s (22.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19855 files and directories currently installed.) @@ -499,7 +531,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -525,7 +561,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.6s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -540,7 +576,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j40 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -552,16 +588,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' +[ 50%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -[ 40%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -576,15 +612,15 @@ make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build +make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o [ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -/usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp +/usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz @@ -614,111 +650,111 @@ [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (3 ms) +[ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (11 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000535 s -[racon::Polisher::initialize] loaded sequences 0.036956 s -[racon::Polisher::initialize] loaded overlaps 0.000709 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.030728 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.039989 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.048445 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.058502 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.065608 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.070416 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.092666 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.112695 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.120592 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.131455 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.142594 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.160936 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.166198 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.177958 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.193409 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.216440 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.221914 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.225437 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.234536 s [racon::Polisher::initialize] aligning overlaps [====================] 0.234904 s -[racon::Polisher::initialize] transformed data into windows 0.001699 s -[racon::Polisher::polish] generating consensus [=> ] 0.018144 s [racon::Polisher::polish] generating consensus [==> ] 0.033144 s [racon::Polisher::polish] generating consensus [===> ] 0.047091 s [racon::Polisher::polish] generating consensus [====> ] 0.059217 s [racon::Polisher::polish] generating consensus [=====> ] 0.065864 s [racon::Polisher::polish] generating consensus [======> ] 0.073650 s [racon::Polisher::polish] generating consensus [=======> ] 0.081213 s [racon::Polisher::polish] generating consensus [========> ] 0.090023 s [racon::Polisher::polish] generating consensus [=========> ] 0.100969 s [racon::Polisher::polish] generating consensus [==========> ] 0.113312 s [racon::Polisher::polish] generating consensus [===========> ] 0.152303 s [racon::Polisher::polish] generating consensus [============> ] 0.183618 s [racon::Polisher::polish] generating consensus [=============> ] 0.217709 s [racon::Polisher::polish] generating consensus [==============> ] 0.249782 s [racon::Polisher::polish] generating consensus [===============> ] 0.274004 s [racon::Polisher::polish] generating consensus [================> ] 0.290975 s [racon::Polisher::polish] generating consensus [=================> ] 0.313585 s [racon::Polisher::polish] generating consensus [==================> ] 0.326232 s [racon::Polisher::polish] generating consensus [===================>] 0.343663 s [racon::Polisher::polish] generating consensus [====================] 0.396300 s -[racon::Polisher::] total = 0.684908 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (697 ms) +[racon::Polisher::initialize] loaded target sequences 0.000506 s +[racon::Polisher::initialize] loaded sequences 0.031218 s +[racon::Polisher::initialize] loaded overlaps 0.000367 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.020484 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.030249 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039951 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048771 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.059328 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.069175 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.093261 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.105020 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.114516 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.122923 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.134532 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.144695 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.155669 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.161159 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.170705 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.193680 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.200790 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.209895 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.222551 s [racon::Polisher::initialize] aligning overlaps [====================] 0.231603 s +[racon::Polisher::initialize] transformed data into windows 0.001709 s +[racon::Polisher::polish] generating consensus [=> ] 0.018530 s [racon::Polisher::polish] generating consensus [==> ] 0.033150 s [racon::Polisher::polish] generating consensus [===> ] 0.047306 s [racon::Polisher::polish] generating consensus [====> ] 0.059249 s [racon::Polisher::polish] generating consensus [=====> ] 0.065544 s [racon::Polisher::polish] generating consensus [======> ] 0.073309 s [racon::Polisher::polish] generating consensus [=======> ] 0.080924 s [racon::Polisher::polish] generating consensus [========> ] 0.095625 s [racon::Polisher::polish] generating consensus [=========> ] 0.107786 s [racon::Polisher::polish] generating consensus [==========> ] 0.122234 s [racon::Polisher::polish] generating consensus [===========> ] 0.143108 s [racon::Polisher::polish] generating consensus [============> ] 0.159506 s [racon::Polisher::polish] generating consensus [=============> ] 0.188426 s [racon::Polisher::polish] generating consensus [==============> ] 0.219978 s [racon::Polisher::polish] generating consensus [===============> ] 0.246237 s [racon::Polisher::polish] generating consensus [================> ] 0.264038 s [racon::Polisher::polish] generating consensus [=================> ] 0.288308 s [racon::Polisher::polish] generating consensus [==================> ] 0.302259 s [racon::Polisher::polish] generating consensus [===================>] 0.315929 s [racon::Polisher::polish] generating consensus [====================] 0.392043 s +[racon::Polisher::] total = 0.670405 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (683 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000443 s -[racon::Polisher::initialize] loaded sequences 0.126124 s -[racon::Polisher::initialize] loaded overlaps 0.000253 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017554 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.027048 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038578 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.049373 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058117 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067883 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091605 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.103395 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112945 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.121307 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132972 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.143085 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.154089 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.159629 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.167334 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.185168 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.191130 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.200088 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.212589 s [racon::Polisher::initialize] aligning overlaps [====================] 0.224530 s -[racon::Polisher::initialize] transformed data into windows 0.000707 s -[racon::Polisher::polish] generating consensus [=> ] 0.020782 s [racon::Polisher::polish] generating consensus [==> ] 0.056960 s [racon::Polisher::polish] generating consensus [===> ] 0.077048 s [racon::Polisher::polish] generating consensus [====> ] 0.089782 s [racon::Polisher::polish] generating consensus [=====> ] 0.098180 s [racon::Polisher::polish] generating consensus [======> ] 0.110286 s [racon::Polisher::polish] generating consensus [=======> ] 0.121522 s [racon::Polisher::polish] generating consensus [========> ] 0.130595 s [racon::Polisher::polish] generating consensus [=========> ] 0.142034 s [racon::Polisher::polish] generating consensus [==========> ] 0.162813 s [racon::Polisher::polish] generating consensus [===========> ] 0.195603 s [racon::Polisher::polish] generating consensus [============> ] 0.225004 s [racon::Polisher::polish] generating consensus [=============> ] 0.264307 s [racon::Polisher::polish] generating consensus [==============> ] 0.304163 s [racon::Polisher::polish] generating consensus [===============> ] 0.336522 s [racon::Polisher::polish] generating consensus [================> ] 0.368374 s [racon::Polisher::polish] generating consensus [=================> ] 0.400570 s [racon::Polisher::polish] generating consensus [==================> ] 0.418056 s [racon::Polisher::polish] generating consensus [===================>] 0.438698 s [racon::Polisher::polish] generating consensus [====================] 0.531385 s -[racon::Polisher::] total = 0.895276 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (907 ms) +[racon::Polisher::initialize] loaded target sequences 0.000408 s +[racon::Polisher::initialize] loaded sequences 0.012608 s +[racon::Polisher::initialize] loaded overlaps 0.000264 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.017121 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026125 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038218 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046796 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057572 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067297 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.090931 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102650 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112234 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120562 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132200 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142333 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153257 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.158689 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.166112 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.181675 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.187276 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.196210 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.209378 s [racon::Polisher::initialize] aligning overlaps [====================] 0.225111 s +[racon::Polisher::initialize] transformed data into windows 0.000493 s +[racon::Polisher::polish] generating consensus [=> ] 0.020802 s [racon::Polisher::polish] generating consensus [==> ] 0.039278 s [racon::Polisher::polish] generating consensus [===> ] 0.059015 s [racon::Polisher::polish] generating consensus [====> ] 0.075074 s [racon::Polisher::polish] generating consensus [=====> ] 0.086938 s [racon::Polisher::polish] generating consensus [======> ] 0.098626 s [racon::Polisher::polish] generating consensus [=======> ] 0.109416 s [racon::Polisher::polish] generating consensus [========> ] 0.118326 s [racon::Polisher::polish] generating consensus [=========> ] 0.129667 s [racon::Polisher::polish] generating consensus [==========> ] 0.150416 s [racon::Polisher::polish] generating consensus [===========> ] 0.183416 s [racon::Polisher::polish] generating consensus [============> ] 0.221225 s [racon::Polisher::polish] generating consensus [=============> ] 0.251186 s [racon::Polisher::polish] generating consensus [==============> ] 0.292256 s [racon::Polisher::polish] generating consensus [===============> ] 0.326930 s [racon::Polisher::polish] generating consensus [================> ] 0.359435 s [racon::Polisher::polish] generating consensus [=================> ] 0.385399 s [racon::Polisher::polish] generating consensus [==================> ] 0.405349 s [racon::Polisher::polish] generating consensus [===================>] 0.427577 s [racon::Polisher::polish] generating consensus [====================] 0.533501 s +[racon::Polisher::] total = 0.784948 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (796 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000403 s -[racon::Polisher::initialize] loaded sequences 0.029434 s -[racon::Polisher::initialize] loaded overlaps 0.018021 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.002388 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002496 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002643 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002756 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002864 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002975 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003084 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003192 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003299 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003404 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003517 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003623 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003756 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003770 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003905 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004063 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004211 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004322 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004335 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004345 s -[racon::Polisher::initialize] transformed data into windows 0.001644 s -[racon::Polisher::polish] generating consensus [=> ] 0.018682 s [racon::Polisher::polish] generating consensus [==> ] 0.033752 s [racon::Polisher::polish] generating consensus [===> ] 0.047582 s [racon::Polisher::polish] generating consensus [====> ] 0.058695 s [racon::Polisher::polish] generating consensus [=====> ] 0.066595 s [racon::Polisher::polish] generating consensus [======> ] 0.073944 s [racon::Polisher::polish] generating consensus [=======> ] 0.081698 s [racon::Polisher::polish] generating consensus [========> ] 0.090178 s [racon::Polisher::polish] generating consensus [=========> ] 0.099805 s [racon::Polisher::polish] generating consensus [==========> ] 0.113374 s [racon::Polisher::polish] generating consensus [===========> ] 0.132244 s [racon::Polisher::polish] generating consensus [============> ] 0.156043 s [racon::Polisher::polish] generating consensus [=============> ] 0.189896 s [racon::Polisher::polish] generating consensus [==============> ] 0.223139 s [racon::Polisher::polish] generating consensus [===============> ] 0.253247 s [racon::Polisher::polish] generating consensus [================> ] 0.273229 s [racon::Polisher::polish] generating consensus [=================> ] 0.299160 s [racon::Polisher::polish] generating consensus [==================> ] 0.313295 s [racon::Polisher::polish] generating consensus [===================>] 0.326912 s [racon::Polisher::polish] generating consensus [====================] 0.386539 s -[racon::Polisher::] total = 0.453612 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (464 ms) +[racon::Polisher::initialize] loaded target sequences 0.000424 s +[racon::Polisher::initialize] loaded sequences 0.029357 s +[racon::Polisher::initialize] loaded overlaps 0.017133 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.002319 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002412 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002514 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002628 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002653 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002730 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002850 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003016 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.003064 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.003194 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.003333 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003409 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003482 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003591 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003710 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003855 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003913 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003969 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004045 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004058 s +[racon::Polisher::initialize] transformed data into windows 0.001612 s +[racon::Polisher::polish] generating consensus [=> ] 0.018912 s [racon::Polisher::polish] generating consensus [==> ] 0.033862 s [racon::Polisher::polish] generating consensus [===> ] 0.047367 s [racon::Polisher::polish] generating consensus [====> ] 0.059049 s [racon::Polisher::polish] generating consensus [=====> ] 0.066173 s [racon::Polisher::polish] generating consensus [======> ] 0.073424 s [racon::Polisher::polish] generating consensus [=======> ] 0.081195 s [racon::Polisher::polish] generating consensus [========> ] 0.089664 s [racon::Polisher::polish] generating consensus [=========> ] 0.099258 s [racon::Polisher::polish] generating consensus [==========> ] 0.114683 s [racon::Polisher::polish] generating consensus [===========> ] 0.133820 s [racon::Polisher::polish] generating consensus [============> ] 0.157665 s [racon::Polisher::polish] generating consensus [=============> ] 0.190807 s [racon::Polisher::polish] generating consensus [==============> ] 0.223966 s [racon::Polisher::polish] generating consensus [===============> ] 0.254637 s [racon::Polisher::polish] generating consensus [================> ] 0.274401 s [racon::Polisher::polish] generating consensus [=================> ] 0.300454 s [racon::Polisher::polish] generating consensus [==================> ] 0.314851 s [racon::Polisher::polish] generating consensus [===================>] 0.328240 s [racon::Polisher::polish] generating consensus [====================] 0.386956 s +[racon::Polisher::] total = 0.453115 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (463 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000414 s -[racon::Polisher::initialize] loaded sequences 0.012579 s -[racon::Polisher::initialize] loaded overlaps 0.016823 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.001893 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002013 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002046 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002160 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002260 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002361 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002435 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002554 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002747 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002849 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002985 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.003143 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003399 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003415 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003548 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003598 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003707 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003815 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003919 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004027 s -[racon::Polisher::initialize] transformed data into windows 0.000455 s -[racon::Polisher::polish] generating consensus [=> ] 0.018319 s [racon::Polisher::polish] generating consensus [==> ] 0.036817 s [racon::Polisher::polish] generating consensus [===> ] 0.054872 s [racon::Polisher::polish] generating consensus [====> ] 0.069622 s [racon::Polisher::polish] generating consensus [=====> ] 0.078382 s [racon::Polisher::polish] generating consensus [======> ] 0.086810 s [racon::Polisher::polish] generating consensus [=======> ] 0.097193 s [racon::Polisher::polish] generating consensus [========> ] 0.108974 s [racon::Polisher::polish] generating consensus [=========> ] 0.120927 s [racon::Polisher::polish] generating consensus [==========> ] 0.139143 s [racon::Polisher::polish] generating consensus [===========> ] 0.161144 s [racon::Polisher::polish] generating consensus [============> ] 0.189305 s [racon::Polisher::polish] generating consensus [=============> ] 0.231741 s [racon::Polisher::polish] generating consensus [==============> ] 0.263815 s [racon::Polisher::polish] generating consensus [===============> ] 0.295764 s [racon::Polisher::polish] generating consensus [================> ] 0.325738 s [racon::Polisher::polish] generating consensus [=================> ] 0.357527 s [racon::Polisher::polish] generating consensus [==================> ] 0.373157 s [racon::Polisher::polish] generating consensus [===================>] 0.390788 s [racon::Polisher::polish] generating consensus [====================] 0.491536 s -[racon::Polisher::] total = 0.534009 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (536 ms) +[racon::Polisher::initialize] loaded target sequences 0.000413 s +[racon::Polisher::initialize] loaded sequences 0.012662 s +[racon::Polisher::initialize] loaded overlaps 0.016843 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.001908 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002041 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002164 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.002218 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.002332 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.002440 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.002480 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.002553 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.002649 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.002706 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.002824 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.002919 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.003035 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.003047 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.003168 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.003317 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.003371 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.003519 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.003664 s [racon::Polisher::initialize] aligning overlaps [====================] 0.003791 s +[racon::Polisher::initialize] transformed data into windows 0.000486 s +[racon::Polisher::polish] generating consensus [=> ] 0.018955 s [racon::Polisher::polish] generating consensus [==> ] 0.037666 s [racon::Polisher::polish] generating consensus [===> ] 0.055898 s [racon::Polisher::polish] generating consensus [====> ] 0.070980 s [racon::Polisher::polish] generating consensus [=====> ] 0.079663 s [racon::Polisher::polish] generating consensus [======> ] 0.086823 s [racon::Polisher::polish] generating consensus [=======> ] 0.096985 s [racon::Polisher::polish] generating consensus [========> ] 0.108630 s [racon::Polisher::polish] generating consensus [=========> ] 0.120437 s [racon::Polisher::polish] generating consensus [==========> ] 0.139657 s [racon::Polisher::polish] generating consensus [===========> ] 0.162783 s [racon::Polisher::polish] generating consensus [============> ] 0.191065 s [racon::Polisher::polish] generating consensus [=============> ] 0.234020 s [racon::Polisher::polish] generating consensus [==============> ] 0.266268 s [racon::Polisher::polish] generating consensus [===============> ] 0.297047 s [racon::Polisher::polish] generating consensus [================> ] 0.327309 s [racon::Polisher::polish] generating consensus [=================> ] 0.359417 s [racon::Polisher::polish] generating consensus [==================> ] 0.375192 s [racon::Polisher::polish] generating consensus [===================>] 0.392858 s [racon::Polisher::polish] generating consensus [====================] 0.491546 s +[racon::Polisher::] total = 0.532834 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (535 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000443 s -[racon::Polisher::initialize] loaded sequences 0.029539 s -[racon::Polisher::initialize] loaded overlaps 0.000317 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017646 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026555 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038581 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.047026 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.057863 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067555 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091121 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102800 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112306 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120652 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132300 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142467 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153423 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.158893 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.166331 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.181770 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.187328 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.196215 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.208571 s [racon::Polisher::initialize] aligning overlaps [====================] 0.223610 s -[racon::Polisher::initialize] transformed data into windows 0.001601 s -[racon::Polisher::polish] generating consensus [=> ] 0.059374 s [racon::Polisher::polish] generating consensus [==> ] 0.059407 s [racon::Polisher::polish] generating consensus [===> ] 0.112147 s [racon::Polisher::polish] generating consensus [====> ] 0.112197 s [racon::Polisher::polish] generating consensus [=====> ] 0.133136 s [racon::Polisher::polish] generating consensus [======> ] 0.133168 s [racon::Polisher::polish] generating consensus [=======> ] 0.160298 s [racon::Polisher::polish] generating consensus [========> ] 0.160355 s [racon::Polisher::polish] generating consensus [=========> ] 0.191036 s [racon::Polisher::polish] generating consensus [==========> ] 0.191823 s [racon::Polisher::polish] generating consensus [===========> ] 0.255950 s [racon::Polisher::polish] generating consensus [============> ] 0.268750 s [racon::Polisher::polish] generating consensus [=============> ] 0.383262 s [racon::Polisher::polish] generating consensus [==============> ] 0.383291 s [racon::Polisher::polish] generating consensus [===============> ] 0.458357 s [racon::Polisher::polish] generating consensus [================> ] 0.458429 s [racon::Polisher::polish] generating consensus [=================> ] 0.521994 s [racon::Polisher::polish] generating consensus [==================> ] 0.522023 s [racon::Polisher::polish] generating consensus [===================>] 0.577421 s [racon::Polisher::polish] generating consensus [====================] 0.681947 s -[racon::Polisher::] total = 0.949359 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (986 ms) +[racon::Polisher::initialize] loaded sequences 0.029571 s +[racon::Polisher::initialize] loaded overlaps 0.000309 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.017949 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026926 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038664 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.047209 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058123 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067819 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091542 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.103392 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112938 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.121517 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.133261 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.143440 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.154483 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.160116 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.167646 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.183416 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.189051 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.198006 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.210462 s [racon::Polisher::initialize] aligning overlaps [====================] 0.226105 s +[racon::Polisher::initialize] transformed data into windows 0.001596 s +[racon::Polisher::polish] generating consensus [=> ] 0.074688 s [racon::Polisher::polish] generating consensus [==> ] 0.074917 s [racon::Polisher::polish] generating consensus [===> ] 0.126289 s [racon::Polisher::polish] generating consensus [====> ] 0.126345 s [racon::Polisher::polish] generating consensus [=====> ] 0.153538 s [racon::Polisher::polish] generating consensus [======> ] 0.153575 s [racon::Polisher::polish] generating consensus [=======> ] 0.176431 s [racon::Polisher::polish] generating consensus [========> ] 0.176484 s [racon::Polisher::polish] generating consensus [=========> ] 0.212115 s [racon::Polisher::polish] generating consensus [==========> ] 0.212146 s [racon::Polisher::polish] generating consensus [===========> ] 0.278440 s [racon::Polisher::polish] generating consensus [============> ] 0.278476 s [racon::Polisher::polish] generating consensus [=============> ] 0.425780 s [racon::Polisher::polish] generating consensus [==============> ] 0.425816 s [racon::Polisher::polish] generating consensus [===============> ] 0.501444 s [racon::Polisher::polish] generating consensus [================> ] 0.502161 s [racon::Polisher::polish] generating consensus [=================> ] 0.565910 s [racon::Polisher::polish] generating consensus [==================> ] 0.566452 s [racon::Polisher::polish] generating consensus [===================>] 0.622184 s [racon::Polisher::polish] generating consensus [====================] 0.706809 s +[racon::Polisher::] total = 0.975268 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1009 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000404 s -[racon::Polisher::initialize] loaded sequences 0.029516 s -[racon::Polisher::initialize] loaded overlaps 0.000310 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.017493 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.034152 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.046360 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.054820 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.065624 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.075319 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.098861 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.110542 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.120066 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.128430 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.140128 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.150247 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.161195 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.166622 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.174047 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.182184 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.187754 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.196639 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.212197 s [racon::Polisher::initialize] aligning overlaps [====================] 0.223769 s -[racon::Polisher::initialize] transformed data into windows 0.001702 s -[racon::Polisher::polish] generating consensus [=> ] 0.017394 s [racon::Polisher::polish] generating consensus [==> ] 0.031722 s [racon::Polisher::polish] generating consensus [===> ] 0.044988 s [racon::Polisher::polish] generating consensus [====> ] 0.055972 s [racon::Polisher::polish] generating consensus [=====> ] 0.063159 s [racon::Polisher::polish] generating consensus [======> ] 0.070651 s [racon::Polisher::polish] generating consensus [=======> ] 0.077929 s [racon::Polisher::polish] generating consensus [========> ] 0.086240 s [racon::Polisher::polish] generating consensus [=========> ] 0.103444 s [racon::Polisher::polish] generating consensus [==========> ] 0.117529 s [racon::Polisher::polish] generating consensus [===========> ] 0.137022 s [racon::Polisher::polish] generating consensus [============> ] 0.152967 s [racon::Polisher::polish] generating consensus [=============> ] 0.180698 s [racon::Polisher::polish] generating consensus [==============> ] 0.209161 s [racon::Polisher::polish] generating consensus [===============> ] 0.234704 s [racon::Polisher::polish] generating consensus [================> ] 0.251920 s [racon::Polisher::polish] generating consensus [=================> ] 0.275345 s [racon::Polisher::polish] generating consensus [==================> ] 0.288838 s [racon::Polisher::polish] generating consensus [===================>] 0.301945 s [racon::Polisher::polish] generating consensus [====================] 0.374823 s -[racon::Polisher::] total = 0.640408 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (643 ms) +[racon::Polisher::initialize] loaded target sequences 0.000419 s +[racon::Polisher::initialize] loaded sequences 0.029458 s +[racon::Polisher::initialize] loaded overlaps 0.000318 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.017815 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026727 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038825 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.047301 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058103 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.067817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.091342 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102991 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.112514 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.120891 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.132602 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.142743 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153768 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.159343 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.166815 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.187226 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.192925 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.201852 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.214263 s [racon::Polisher::initialize] aligning overlaps [====================] 0.225706 s +[racon::Polisher::initialize] transformed data into windows 0.001774 s +[racon::Polisher::polish] generating consensus [=> ] 0.017474 s [racon::Polisher::polish] generating consensus [==> ] 0.031817 s [racon::Polisher::polish] generating consensus [===> ] 0.044791 s [racon::Polisher::polish] generating consensus [====> ] 0.056212 s [racon::Polisher::polish] generating consensus [=====> ] 0.063000 s [racon::Polisher::polish] generating consensus [======> ] 0.070629 s [racon::Polisher::polish] generating consensus [=======> ] 0.077906 s [racon::Polisher::polish] generating consensus [========> ] 0.086314 s [racon::Polisher::polish] generating consensus [=========> ] 0.096944 s [racon::Polisher::polish] generating consensus [==========> ] 0.108480 s [racon::Polisher::polish] generating consensus [===========> ] 0.128251 s [racon::Polisher::polish] generating consensus [============> ] 0.152527 s [racon::Polisher::polish] generating consensus [=============> ] 0.184380 s [racon::Polisher::polish] generating consensus [==============> ] 0.216422 s [racon::Polisher::polish] generating consensus [===============> ] 0.239640 s [racon::Polisher::polish] generating consensus [================> ] 0.255711 s [racon::Polisher::polish] generating consensus [=================> ] 0.277300 s [racon::Polisher::polish] generating consensus [==================> ] 0.289300 s [racon::Polisher::polish] generating consensus [===================>] 0.305731 s [racon::Polisher::polish] generating consensus [====================] 0.375895 s +[racon::Polisher::] total = 0.643525 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (646 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.029486 s -[racon::Polisher::initialize] loaded sequences 0.029584 s -[racon::Polisher::initialize] loaded overlaps 0.007017 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.019050 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.099957 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.105390 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.115112 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.124663 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.134044 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.142272 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.151846 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.166490 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.178417 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.191334 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.211418 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.225362 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.241571 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.252149 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.269407 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.280002 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.292026 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.304713 s [racon::Polisher::initialize] aligning overlaps [====================] 0.319897 s -[racon::Polisher::initialize] transformed data into windows 0.002771 s -[racon::Polisher::polish] generating consensus [=> ] 0.017177 s [racon::Polisher::polish] generating consensus [==> ] 0.033042 s [racon::Polisher::polish] generating consensus [===> ] 0.050002 s [racon::Polisher::polish] generating consensus [====> ] 0.050394 s [racon::Polisher::polish] generating consensus [=====> ] 0.062045 s [racon::Polisher::polish] generating consensus [======> ] 0.069867 s [racon::Polisher::polish] generating consensus [=======> ] 0.081810 s [racon::Polisher::polish] generating consensus [========> ] 0.084430 s [racon::Polisher::polish] generating consensus [=========> ] 0.104876 s [racon::Polisher::polish] generating consensus [==========> ] 0.114657 s [racon::Polisher::polish] generating consensus [===========> ] 0.123267 s [racon::Polisher::polish] generating consensus [============> ] 0.126606 s [racon::Polisher::polish] generating consensus [=============> ] 0.136114 s [racon::Polisher::polish] generating consensus [==============> ] 0.136712 s [racon::Polisher::polish] generating consensus [===============> ] 0.158616 s [racon::Polisher::polish] generating consensus [================> ] 0.159287 s [racon::Polisher::polish] generating consensus [=================> ] 0.198398 s [racon::Polisher::polish] generating consensus [==================> ] 0.212285 s [racon::Polisher::polish] generating consensus [===================>] 0.221280 s [racon::Polisher::polish] generating consensus [====================] 0.222251 s -[racon::Polisher::] total = 0.611396 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (614 ms) +[racon::Polisher::initialize] loaded target sequences 0.029522 s +[racon::Polisher::initialize] loaded sequences 0.029698 s +[racon::Polisher::initialize] loaded overlaps 0.006926 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.019496 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.034433 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039920 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.049786 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.059025 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.068817 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.085737 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.095279 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.110257 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.122526 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.135761 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.156077 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.170332 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.186828 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.197543 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.215149 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.225993 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.228371 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240755 s [racon::Polisher::initialize] aligning overlaps [====================] 0.256214 s +[racon::Polisher::initialize] transformed data into windows 0.002820 s +[racon::Polisher::polish] generating consensus [=> ] 0.016423 s [racon::Polisher::polish] generating consensus [==> ] 0.033552 s [racon::Polisher::polish] generating consensus [===> ] 0.050582 s [racon::Polisher::polish] generating consensus [====> ] 0.050914 s [racon::Polisher::polish] generating consensus [=====> ] 0.061192 s [racon::Polisher::polish] generating consensus [======> ] 0.067625 s [racon::Polisher::polish] generating consensus [=======> ] 0.077619 s [racon::Polisher::polish] generating consensus [========> ] 0.079163 s [racon::Polisher::polish] generating consensus [=========> ] 0.099104 s [racon::Polisher::polish] generating consensus [==========> ] 0.108601 s [racon::Polisher::polish] generating consensus [===========> ] 0.116907 s [racon::Polisher::polish] generating consensus [============> ] 0.120005 s [racon::Polisher::polish] generating consensus [=============> ] 0.129646 s [racon::Polisher::polish] generating consensus [==============> ] 0.129951 s [racon::Polisher::polish] generating consensus [===============> ] 0.151623 s [racon::Polisher::polish] generating consensus [================> ] 0.152024 s [racon::Polisher::polish] generating consensus [=================> ] 0.190509 s [racon::Polisher::polish] generating consensus [==================> ] 0.204676 s [racon::Polisher::polish] generating consensus [===================>] 0.217681 s [racon::Polisher::polish] generating consensus [====================] 0.220763 s +[racon::Polisher::] total = 0.546433 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (548 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.029467 s -[racon::Polisher::initialize] loaded sequences 0.029595 s -[racon::Polisher::initialize] loaded overlaps 0.006690 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.287939 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.476146 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.646075 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.911083 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.128465 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.280267 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.485281 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.749185 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.992046 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.235835 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.423333 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.689486 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.958948 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.194428 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.495073 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.774216 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.022388 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.307326 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.616116 s [racon::Polisher::initialize] aligning overlaps [====================] 4.835962 s -[racon::Polisher::initialize] transformed data into windows 0.044141 s -[racon::Polisher::polish] generating consensus [=> ] 0.729389 s [racon::Polisher::polish] generating consensus [==> ] 1.239087 s [racon::Polisher::polish] generating consensus [===> ] 1.757878 s [racon::Polisher::polish] generating consensus [====> ] 2.191233 s [racon::Polisher::polish] generating consensus [=====> ] 2.707860 s [racon::Polisher::polish] generating consensus [======> ] 3.275085 s [racon::Polisher::polish] generating consensus [=======> ] 3.855982 s [racon::Polisher::polish] generating consensus [========> ] 4.280725 s [racon::Polisher::polish] generating consensus [=========> ] 4.830248 s [racon::Polisher::polish] generating consensus [==========> ] 5.469107 s [racon::Polisher::polish] generating consensus [===========> ] 6.012973 s [racon::Polisher::polish] generating consensus [============> ] 6.589425 s [racon::Polisher::polish] generating consensus [=============> ] 7.085933 s [racon::Polisher::polish] generating consensus [==============> ] 7.625624 s [racon::Polisher::polish] generating consensus [===============> ] 8.208610 s [racon::Polisher::polish] generating consensus [================> ] 8.525686 s [racon::Polisher::polish] generating consensus [=================> ] 9.174219 s [racon::Polisher::polish] generating consensus [==================> ] 9.782795 s [racon::Polisher::polish] generating consensus [===================>] 10.368313 s [racon::Polisher::polish] generating consensus [====================] 10.834230 s -[racon::Polisher::] total = 15.783119 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (15785 ms) +[racon::Polisher::initialize] loaded target sequences 0.029566 s +[racon::Polisher::initialize] loaded sequences 0.029797 s +[racon::Polisher::initialize] loaded overlaps 0.006958 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.286421 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.472328 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.648210 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.899661 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.119372 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.272418 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.475263 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.743887 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.990645 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.238305 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.427008 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.695233 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.968112 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.195373 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.507561 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.791885 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.044256 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.317473 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.619189 s [racon::Polisher::initialize] aligning overlaps [====================] 4.858000 s +[racon::Polisher::initialize] transformed data into windows 0.044691 s +[racon::Polisher::polish] generating consensus [=> ] 0.686640 s [racon::Polisher::polish] generating consensus [==> ] 1.200459 s [racon::Polisher::polish] generating consensus [===> ] 1.743502 s [racon::Polisher::polish] generating consensus [====> ] 2.189954 s [racon::Polisher::polish] generating consensus [=====> ] 2.700025 s [racon::Polisher::polish] generating consensus [======> ] 3.273456 s [racon::Polisher::polish] generating consensus [=======> ] 3.848932 s [racon::Polisher::polish] generating consensus [========> ] 4.271046 s [racon::Polisher::polish] generating consensus [=========> ] 4.820214 s [racon::Polisher::polish] generating consensus [==========> ] 5.457150 s [racon::Polisher::polish] generating consensus [===========> ] 5.996821 s [racon::Polisher::polish] generating consensus [============> ] 6.566800 s [racon::Polisher::polish] generating consensus [=============> ] 7.058239 s [racon::Polisher::polish] generating consensus [==============> ] 7.594192 s [racon::Polisher::polish] generating consensus [===============> ] 8.173677 s [racon::Polisher::polish] generating consensus [================> ] 8.488940 s [racon::Polisher::polish] generating consensus [=================> ] 9.133471 s [racon::Polisher::polish] generating consensus [==================> ] 9.737302 s [racon::Polisher::polish] generating consensus [===================>] 10.318074 s [racon::Polisher::polish] generating consensus [====================] 10.769100 s +[racon::Polisher::] total = 15.740949 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (15743 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.012629 s -[racon::Polisher::initialize] loaded sequences 0.012664 s -[racon::Polisher::initialize] loaded overlaps 0.006794 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.285539 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.471935 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.655047 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.904752 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.123264 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.276628 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.484036 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.758822 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.001591 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.245165 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.433146 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.701263 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.971487 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.193197 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.504659 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.787235 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.036911 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.306277 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.612555 s [racon::Polisher::initialize] aligning overlaps [====================] 4.852790 s -[racon::Polisher::initialize] transformed data into windows 0.012323 s -[racon::Polisher::polish] generating consensus [=> ] 0.960720 s [racon::Polisher::polish] generating consensus [==> ] 1.701200 s [racon::Polisher::polish] generating consensus [===> ] 2.430422 s [racon::Polisher::polish] generating consensus [====> ] 2.983107 s [racon::Polisher::polish] generating consensus [=====> ] 3.668257 s [racon::Polisher::polish] generating consensus [======> ] 4.416810 s [racon::Polisher::polish] generating consensus [=======> ] 5.211206 s [racon::Polisher::polish] generating consensus [========> ] 5.781264 s [racon::Polisher::polish] generating consensus [=========> ] 6.575458 s [racon::Polisher::polish] generating consensus [==========> ] 7.446651 s [racon::Polisher::polish] generating consensus [===========> ] 8.176455 s [racon::Polisher::polish] generating consensus [============> ] 8.963392 s [racon::Polisher::polish] generating consensus [=============> ] 9.690933 s [racon::Polisher::polish] generating consensus [==============> ] 10.443331 s [racon::Polisher::polish] generating consensus [===============> ] 11.198266 s [racon::Polisher::polish] generating consensus [================> ] 11.598767 s [racon::Polisher::polish] generating consensus [=================> ] 12.555641 s [racon::Polisher::polish] generating consensus [==================> ] 13.443986 s [racon::Polisher::polish] generating consensus [===================>] 14.246500 s [racon::Polisher::polish] generating consensus [====================] 14.790598 s -[racon::Polisher::] total = 19.689503 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (19692 ms) +[racon::Polisher::initialize] loaded target sequences 0.012474 s +[racon::Polisher::initialize] loaded sequences 0.012614 s +[racon::Polisher::initialize] loaded overlaps 0.006618 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.282204 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.466904 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.640739 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.888781 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.104924 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.256163 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.461752 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.744437 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.986436 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.225161 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.415687 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.682722 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.952186 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.184475 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.483605 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.765806 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.014942 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.295278 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.598934 s [racon::Polisher::initialize] aligning overlaps [====================] 4.843486 s +[racon::Polisher::initialize] transformed data into windows 0.012037 s +[racon::Polisher::polish] generating consensus [=> ] 0.956299 s [racon::Polisher::polish] generating consensus [==> ] 1.699368 s [racon::Polisher::polish] generating consensus [===> ] 2.427047 s [racon::Polisher::polish] generating consensus [====> ] 2.975848 s [racon::Polisher::polish] generating consensus [=====> ] 3.662782 s [racon::Polisher::polish] generating consensus [======> ] 4.412986 s [racon::Polisher::polish] generating consensus [=======> ] 5.203938 s [racon::Polisher::polish] generating consensus [========> ] 5.775383 s [racon::Polisher::polish] generating consensus [=========> ] 6.560912 s [racon::Polisher::polish] generating consensus [==========> ] 7.431776 s [racon::Polisher::polish] generating consensus [===========> ] 8.162112 s [racon::Polisher::polish] generating consensus [============> ] 8.949582 s [racon::Polisher::polish] generating consensus [=============> ] 9.679713 s [racon::Polisher::polish] generating consensus [==============> ] 10.423337 s [racon::Polisher::polish] generating consensus [===============> ] 11.169740 s [racon::Polisher::polish] generating consensus [================> ] 11.569154 s [racon::Polisher::polish] generating consensus [=================> ] 12.526036 s [racon::Polisher::polish] generating consensus [==================> ] 13.412491 s [racon::Polisher::polish] generating consensus [===================>] 14.217364 s [racon::Polisher::polish] generating consensus [====================] 14.705077 s +[racon::Polisher::] total = 19.593993 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (19596 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.029556 s -[racon::Polisher::initialize] loaded sequences 0.029376 s -[racon::Polisher::initialize] loaded overlaps 0.041659 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.278236 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.463463 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.643402 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.891889 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.110327 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.261951 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.466570 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.729435 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.971335 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.214828 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.402257 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.668423 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.937610 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.181487 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.473903 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.753305 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.997078 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.299086 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.603437 s [racon::Polisher::initialize] aligning overlaps [====================] 4.854513 s -[racon::Polisher::initialize] transformed data into windows 0.044047 s -[racon::Polisher::polish] generating consensus [=> ] 0.716159 s [racon::Polisher::polish] generating consensus [==> ] 1.222329 s [racon::Polisher::polish] generating consensus [===> ] 1.766824 s [racon::Polisher::polish] generating consensus [====> ] 2.219579 s [racon::Polisher::polish] generating consensus [=====> ] 2.780310 s [racon::Polisher::polish] generating consensus [======> ] 3.347343 s [racon::Polisher::polish] generating consensus [=======> ] 3.885083 s [racon::Polisher::polish] generating consensus [========> ] 4.313658 s [racon::Polisher::polish] generating consensus [=========> ] 4.818171 s [racon::Polisher::polish] generating consensus [==========> ] 5.456857 s [racon::Polisher::polish] generating consensus [===========> ] 5.983781 s [racon::Polisher::polish] generating consensus [============> ] 6.543655 s [racon::Polisher::polish] generating consensus [=============> ] 7.068469 s [racon::Polisher::polish] generating consensus [==============> ] 7.658628 s [racon::Polisher::polish] generating consensus [===============> ] 8.750514 s [racon::Polisher::polish] generating consensus [================> ] 9.110951 s [racon::Polisher::polish] generating consensus [=================> ] 9.758864 s [racon::Polisher::polish] generating consensus [==================> ] 10.326292 s [racon::Polisher::polish] generating consensus [===================>] 10.918677 s [racon::Polisher::polish] generating consensus [====================] 11.391696 s -[racon::Polisher::] total = 16.393070 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (16395 ms) -[----------] 10 tests from RaconPolishingTest (56724 ms total) +[racon::Polisher::initialize] loaded target sequences 0.029349 s +[racon::Polisher::initialize] loaded sequences 0.029261 s +[racon::Polisher::initialize] loaded overlaps 0.006340 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.282979 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.469522 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.642999 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.892254 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.108744 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.260120 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.465610 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.729555 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.973076 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.216913 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.405795 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.672303 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.941828 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.185315 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.486240 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.767337 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.004380 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.301483 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.607986 s [racon::Polisher::initialize] aligning overlaps [====================] 4.831661 s +[racon::Polisher::initialize] transformed data into windows 0.044216 s +[racon::Polisher::polish] generating consensus [=> ] 0.682761 s [racon::Polisher::polish] generating consensus [==> ] 1.192428 s [racon::Polisher::polish] generating consensus [===> ] 1.735759 s [racon::Polisher::polish] generating consensus [====> ] 2.182939 s [racon::Polisher::polish] generating consensus [=====> ] 2.681226 s [racon::Polisher::polish] generating consensus [======> ] 3.256907 s [racon::Polisher::polish] generating consensus [=======> ] 3.834081 s [racon::Polisher::polish] generating consensus [========> ] 4.257362 s [racon::Polisher::polish] generating consensus [=========> ] 4.806999 s [racon::Polisher::polish] generating consensus [==========> ] 5.446078 s [racon::Polisher::polish] generating consensus [===========> ] 5.990409 s [racon::Polisher::polish] generating consensus [============> ] 6.566087 s [racon::Polisher::polish] generating consensus [=============> ] 7.063898 s [racon::Polisher::polish] generating consensus [==============> ] 7.605650 s [racon::Polisher::polish] generating consensus [===============> ] 8.189449 s [racon::Polisher::polish] generating consensus [================> ] 8.508066 s [racon::Polisher::polish] generating consensus [=================> ] 9.358852 s [racon::Polisher::polish] generating consensus [==================> ] 10.906656 s [racon::Polisher::polish] generating consensus [===================>] 11.789042 s [racon::Polisher::polish] generating consensus [====================] 12.138283 s +[racon::Polisher::] total = 17.081418 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (17092 ms) +[----------] 10 tests from RaconPolishingTest (57117 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (56735 ms total) +[==========] 15 tests from 2 test suites ran. (57129 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -751,8 +787,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-deb: building package 'racon' in '../racon_1.5.0-3_amd64.deb'. +dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_amd64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_amd64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -760,12 +796,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3944353/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/931344 and its subdirectories -I: Current time: Fri Aug 29 11:30:10 -12 2025 -I: pbuilder-time-stamp: 1756510210 +I: removing directory /srv/workspace/pbuilder/3944353 and its subdirectories +I: Current time: Fri Oct 2 19:55:09 +14 2026 +I: pbuilder-time-stamp: 1790920509