Diff of the two buildlogs: -- --- b1/build.log 2025-10-12 05:48:38.134199918 +0000 +++ b2/build.log 2025-10-12 05:52:57.278543225 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 14 00:02:05 -12 2026 -I: pbuilder-time-stamp: 1794657725 +I: Current time: Sun Oct 12 19:48:40 +14 2025 +I: pbuilder-time-stamp: 1760248120 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1592967/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 12 05:49 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='531d94e2b04a4fee987c5a121e30ff6e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1592967' - PS1='# ' - PS2='> ' + INVOCATION_ID=371f0b1ecb43471cb9ae305b25e7ae3c + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=919295 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TYGQnpQR/pbuilderrc_QLEh --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TYGQnpQR/b1 --logfile b1/build.log racon_1.5.0-4.dsc' - SUDO_GID='111' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TYGQnpQR/pbuilderrc_GAKf --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TYGQnpQR/b2 --logfile b2/build.log racon_1.5.0-4.dsc' + SUDO_GID=111 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1592967/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -199,7 +231,7 @@ Get: 72 http://deb.debian.org/debian forky/main amd64 libspoa-dev amd64 4.1.5-1 [9668 B] Get: 73 http://deb.debian.org/debian forky/main amd64 libthread-pool-dev amd64 4.0.0-2 [7312 B] Get: 74 http://deb.debian.org/debian forky/main amd64 rampler amd64 2.1.1-1 [21.2 kB] -Fetched 34.1 MB in 4s (8901 kB/s) +Fetched 34.1 MB in 1s (36.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19898 files and directories currently installed.) @@ -510,7 +542,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-4 dpkg-buildpackage: info: source distribution unstable @@ -536,7 +572,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (3.2s) +-- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -551,7 +587,7 @@ sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -564,15 +600,15 @@ make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp -[ 20%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp -[ 40%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +[ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -583,19 +619,19 @@ make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' +cd /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu/CMakeFiles/racon_exe.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build +make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' -[ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp -[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o +[ 70%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp +[ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o +/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz @@ -617,119 +653,119 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (2 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (6 ms) +[ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (5 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (16 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (8 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (21 ms) -[----------] 5 tests from RaconInitializeTest (54 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (8 ms) +[----------] 5 tests from RaconInitializeTest (23 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000854 s -[racon::Polisher::initialize] loaded sequences 0.110264 s -[racon::Polisher::initialize] loaded overlaps 0.000728 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.116156 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.177255 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.228261 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.272969 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.295050 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.320921 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.387961 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.465970 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.505433 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.538482 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.574544 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.631163 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.682901 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.719378 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.778911 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.893331 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.927590 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.973504 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.994161 s [racon::Polisher::initialize] aligning overlaps [====================] 1.008427 s -[racon::Polisher::initialize] transformed data into windows 0.002327 s -[racon::Polisher::polish] generating consensus [=> ] 0.109504 s [racon::Polisher::polish] generating consensus [==> ] 0.190130 s [racon::Polisher::polish] generating consensus [===> ] 0.271412 s [racon::Polisher::polish] generating consensus [====> ] 0.354486 s [racon::Polisher::polish] generating consensus [=====> ] 0.395511 s [racon::Polisher::polish] generating consensus [======> ] 0.444010 s [racon::Polisher::polish] generating consensus [=======> ] 0.465360 s [racon::Polisher::polish] generating consensus [========> ] 0.487918 s [racon::Polisher::polish] generating consensus [=========> ] 0.572851 s [racon::Polisher::polish] generating consensus [==========> ] 0.660237 s [racon::Polisher::polish] generating consensus [===========> ] 0.767888 s [racon::Polisher::polish] generating consensus [============> ] 0.927784 s [racon::Polisher::polish] generating consensus [=============> ] 1.124050 s [racon::Polisher::polish] generating consensus [==============> ] 1.298761 s [racon::Polisher::polish] generating consensus [===============> ] 1.463351 s [racon::Polisher::polish] generating consensus [================> ] 1.555951 s [racon::Polisher::polish] generating consensus [=================> ] 1.673862 s [racon::Polisher::polish] generating consensus [==================> ] 1.732783 s [racon::Polisher::polish] generating consensus [===================>] 1.810918 s [racon::Polisher::polish] generating consensus [====================] 2.057030 s -[racon::Polisher::] total = 3.208650 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (3249 ms) +[racon::Polisher::initialize] loaded target sequences 0.001186 s +[racon::Polisher::initialize] loaded sequences 0.044302 s +[racon::Polisher::initialize] loaded overlaps 0.001208 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.048935 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.064025 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.080913 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.092163 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.106793 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.122566 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.149600 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.164406 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.177107 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.188082 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.203660 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.216997 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.230925 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.238522 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.257680 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.268219 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.286486 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.305441 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.311237 s [racon::Polisher::initialize] aligning overlaps [====================] 0.322301 s +[racon::Polisher::initialize] transformed data into windows 0.002136 s +[racon::Polisher::polish] generating consensus [=> ] 0.029635 s [racon::Polisher::polish] generating consensus [==> ] 0.053487 s [racon::Polisher::polish] generating consensus [===> ] 0.077521 s [racon::Polisher::polish] generating consensus [====> ] 0.093643 s [racon::Polisher::polish] generating consensus [=====> ] 0.102074 s [racon::Polisher::polish] generating consensus [======> ] 0.117044 s [racon::Polisher::polish] generating consensus [=======> ] 0.130847 s [racon::Polisher::polish] generating consensus [========> ] 0.141940 s [racon::Polisher::polish] generating consensus [=========> ] 0.170598 s [racon::Polisher::polish] generating consensus [==========> ] 0.193751 s [racon::Polisher::polish] generating consensus [===========> ] 0.227276 s [racon::Polisher::polish] generating consensus [============> ] 0.256515 s [racon::Polisher::polish] generating consensus [=============> ] 0.313467 s [racon::Polisher::polish] generating consensus [==============> ] 0.366444 s [racon::Polisher::polish] generating consensus [===============> ] 0.407388 s [racon::Polisher::polish] generating consensus [================> ] 0.438005 s [racon::Polisher::polish] generating consensus [=================> ] 0.477441 s [racon::Polisher::polish] generating consensus [==================> ] 0.500340 s [racon::Polisher::polish] generating consensus [===================>] 0.521403 s [racon::Polisher::polish] generating consensus [====================] 0.620836 s +[racon::Polisher::] total = 1.015660 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (1036 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000631 s -[racon::Polisher::initialize] loaded sequences 0.071017 s -[racon::Polisher::initialize] loaded overlaps 0.000388 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.085159 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.147295 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.205597 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.241106 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.289558 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.338513 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.454499 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.554051 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.554080 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.554091 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.554101 s [racon::Polisher::initialize] aligning overlaps [============> ] 1.554110 s [racon::Polisher::initialize] aligning overlaps [=============> ] 1.554120 s [racon::Polisher::initialize] aligning overlaps [==============> ] 1.554130 s [racon::Polisher::initialize] aligning overlaps [===============> ] 1.554140 s [racon::Polisher::initialize] aligning overlaps [================> ] 1.554150 s [racon::Polisher::initialize] aligning overlaps [=================> ] 1.554162 s [racon::Polisher::initialize] aligning overlaps [==================> ] 1.554172 s [racon::Polisher::initialize] aligning overlaps [===================>] 1.558986 s [racon::Polisher::initialize] aligning overlaps [====================] 1.588253 s -[racon::Polisher::initialize] transformed data into windows 0.000683 s -[racon::Polisher::polish] generating consensus [=> ] 0.069506 s [racon::Polisher::polish] generating consensus [==> ] 0.159934 s [racon::Polisher::polish] generating consensus [===> ] 0.221256 s [racon::Polisher::polish] generating consensus [====> ] 0.289083 s [racon::Polisher::polish] generating consensus [=====> ] 0.337605 s [racon::Polisher::polish] generating consensus [======> ] 0.377480 s [racon::Polisher::polish] generating consensus [=======> ] 0.402623 s [racon::Polisher::polish] generating consensus [========> ] 0.444494 s [racon::Polisher::polish] generating consensus [=========> ] 0.496930 s [racon::Polisher::polish] generating consensus [==========> ] 0.624300 s [racon::Polisher::polish] generating consensus [===========> ] 0.695965 s [racon::Polisher::polish] generating consensus [============> ] 0.802688 s [racon::Polisher::polish] generating consensus [=============> ] 0.915268 s [racon::Polisher::polish] generating consensus [==============> ] 0.991113 s [racon::Polisher::polish] generating consensus [===============> ] 1.065133 s [racon::Polisher::polish] generating consensus [================> ] 1.152753 s [racon::Polisher::polish] generating consensus [=================> ] 1.203810 s [racon::Polisher::polish] generating consensus [==================> ] 1.228993 s [racon::Polisher::polish] generating consensus [===================>] 1.257851 s [racon::Polisher::polish] generating consensus [====================] 1.338910 s -[racon::Polisher::] total = 3.021597 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (3086 ms) +[racon::Polisher::initialize] loaded target sequences 0.000979 s +[racon::Polisher::initialize] loaded sequences 0.020181 s +[racon::Polisher::initialize] loaded overlaps 0.000499 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.022839 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.034843 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.051093 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.064357 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.076809 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.089305 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.119584 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.134766 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.147879 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.160287 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.176358 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.188465 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.202340 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.209345 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.219177 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.239450 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.246908 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.265622 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.286209 s [racon::Polisher::initialize] aligning overlaps [====================] 0.296307 s +[racon::Polisher::initialize] transformed data into windows 0.000892 s +[racon::Polisher::polish] generating consensus [=> ] 0.032986 s [racon::Polisher::polish] generating consensus [==> ] 0.064766 s [racon::Polisher::polish] generating consensus [===> ] 0.092608 s [racon::Polisher::polish] generating consensus [====> ] 0.115793 s [racon::Polisher::polish] generating consensus [=====> ] 0.131710 s [racon::Polisher::polish] generating consensus [======> ] 0.146566 s [racon::Polisher::polish] generating consensus [=======> ] 0.165531 s [racon::Polisher::polish] generating consensus [========> ] 0.182760 s [racon::Polisher::polish] generating consensus [=========> ] 0.205152 s [racon::Polisher::polish] generating consensus [==========> ] 0.247366 s [racon::Polisher::polish] generating consensus [===========> ] 0.295101 s [racon::Polisher::polish] generating consensus [============> ] 0.349474 s [racon::Polisher::polish] generating consensus [=============> ] 0.424675 s [racon::Polisher::polish] generating consensus [==============> ] 0.476107 s [racon::Polisher::polish] generating consensus [===============> ] 0.532254 s [racon::Polisher::polish] generating consensus [================> ] 0.573591 s [racon::Polisher::polish] generating consensus [=================> ] 0.618415 s [racon::Polisher::polish] generating consensus [==================> ] 0.645464 s [racon::Polisher::polish] generating consensus [===================>] 0.683130 s [racon::Polisher::polish] generating consensus [====================] 0.867543 s +[racon::Polisher::] total = 1.205062 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1226 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000721 s -[racon::Polisher::initialize] loaded sequences 0.041438 s -[racon::Polisher::initialize] loaded overlaps 0.025244 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.015778 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.015909 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.015996 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.016092 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.016177 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.016272 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.016357 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.016442 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.016525 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.016633 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.016715 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.016801 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.016883 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.016966 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.017050 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.020762 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.020856 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.020944 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.021028 s [racon::Polisher::initialize] aligning overlaps [====================] 0.021112 s -[racon::Polisher::initialize] transformed data into windows 0.002084 s -[racon::Polisher::polish] generating consensus [=> ] 0.076459 s [racon::Polisher::polish] generating consensus [==> ] 0.117669 s [racon::Polisher::polish] generating consensus [===> ] 0.158312 s [racon::Polisher::polish] generating consensus [====> ] 0.194482 s [racon::Polisher::polish] generating consensus [=====> ] 0.220569 s [racon::Polisher::polish] generating consensus [======> ] 0.244507 s [racon::Polisher::polish] generating consensus [=======> ] 0.275100 s [racon::Polisher::polish] generating consensus [========> ] 0.305360 s [racon::Polisher::polish] generating consensus [=========> ] 0.331463 s [racon::Polisher::polish] generating consensus [==========> ] 0.367499 s [racon::Polisher::polish] generating consensus [===========> ] 0.433308 s [racon::Polisher::polish] generating consensus [============> ] 0.512317 s [racon::Polisher::polish] generating consensus [=============> ] 0.603076 s [racon::Polisher::polish] generating consensus [==============> ] 0.652639 s [racon::Polisher::polish] generating consensus [===============> ] 0.688532 s [racon::Polisher::polish] generating consensus [================> ] 0.726247 s [racon::Polisher::polish] generating consensus [=================> ] 0.879859 s [racon::Polisher::polish] generating consensus [==================> ] 0.879901 s [racon::Polisher::polish] generating consensus [===================>] 0.880030 s [racon::Polisher::polish] generating consensus [====================] 0.966337 s -[racon::Polisher::] total = 1.104426 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1129 ms) +[racon::Polisher::initialize] loaded target sequences 0.000662 s +[racon::Polisher::initialize] loaded sequences 0.044077 s +[racon::Polisher::initialize] loaded overlaps 0.023878 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.004857 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004974 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005036 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005169 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005334 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005485 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005576 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005663 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005891 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005914 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005924 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.005968 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006068 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006078 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.006087 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.006161 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.006171 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006216 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006243 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006326 s +[racon::Polisher::initialize] transformed data into windows 0.002034 s +[racon::Polisher::polish] generating consensus [=> ] 0.028838 s [racon::Polisher::polish] generating consensus [==> ] 0.053258 s [racon::Polisher::polish] generating consensus [===> ] 0.077534 s [racon::Polisher::polish] generating consensus [====> ] 0.096074 s [racon::Polisher::polish] generating consensus [=====> ] 0.104398 s [racon::Polisher::polish] generating consensus [======> ] 0.117379 s [racon::Polisher::polish] generating consensus [=======> ] 0.133229 s [racon::Polisher::polish] generating consensus [========> ] 0.146807 s [racon::Polisher::polish] generating consensus [=========> ] 0.157080 s [racon::Polisher::polish] generating consensus [==========> ] 0.188289 s [racon::Polisher::polish] generating consensus [===========> ] 0.219082 s [racon::Polisher::polish] generating consensus [============> ] 0.257387 s [racon::Polisher::polish] generating consensus [=============> ] 0.311757 s [racon::Polisher::polish] generating consensus [==============> ] 0.367793 s [racon::Polisher::polish] generating consensus [===============> ] 0.423667 s [racon::Polisher::polish] generating consensus [================> ] 0.450444 s [racon::Polisher::polish] generating consensus [=================> ] 0.488315 s [racon::Polisher::polish] generating consensus [==================> ] 0.510864 s [racon::Polisher::polish] generating consensus [===================>] 0.529953 s [racon::Polisher::polish] generating consensus [====================] 0.615453 s +[racon::Polisher::] total = 0.713103 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (730 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000899 s -[racon::Polisher::initialize] loaded sequences 0.036159 s -[racon::Polisher::initialize] loaded overlaps 0.025539 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.012582 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.013191 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.013746 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.014291 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.014844 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.015277 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.015802 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.015901 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.015915 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.015926 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.015936 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.015947 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.015957 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.015967 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.015977 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.015987 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.015997 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.016008 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.016018 s [racon::Polisher::initialize] aligning overlaps [====================] 0.016029 s -[racon::Polisher::initialize] transformed data into windows 0.000621 s -[racon::Polisher::polish] generating consensus [=> ] 0.081685 s [racon::Polisher::polish] generating consensus [==> ] 0.144697 s [racon::Polisher::polish] generating consensus [===> ] 0.212548 s [racon::Polisher::polish] generating consensus [====> ] 0.255561 s [racon::Polisher::polish] generating consensus [=====> ] 0.271399 s [racon::Polisher::polish] generating consensus [======> ] 0.294456 s [racon::Polisher::polish] generating consensus [=======> ] 0.335251 s [racon::Polisher::polish] generating consensus [========> ] 0.370706 s [racon::Polisher::polish] generating consensus [=========> ] 0.407516 s [racon::Polisher::polish] generating consensus [==========> ] 0.521140 s [racon::Polisher::polish] generating consensus [===========> ] 0.597254 s [racon::Polisher::polish] generating consensus [============> ] 0.664567 s [racon::Polisher::polish] generating consensus [=============> ] 0.725762 s [racon::Polisher::polish] generating consensus [==============> ] 0.831497 s [racon::Polisher::polish] generating consensus [===============> ] 0.908334 s [racon::Polisher::polish] generating consensus [================> ] 0.956608 s [racon::Polisher::polish] generating consensus [=================> ] 1.016814 s [racon::Polisher::polish] generating consensus [==================> ] 1.079669 s [racon::Polisher::polish] generating consensus [===================>] 1.079707 s [racon::Polisher::polish] generating consensus [====================] 1.121682 s -[racon::Polisher::] total = 1.221532 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (1228 ms) +[racon::Polisher::initialize] loaded target sequences 0.001071 s +[racon::Polisher::initialize] loaded sequences 0.021228 s +[racon::Polisher::initialize] loaded overlaps 0.027158 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.002732 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002837 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003063 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003285 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003382 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003473 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003627 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.003923 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.004016 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004099 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004533 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.004632 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005074 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.005170 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.005265 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005359 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005452 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.005544 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.005634 s [racon::Polisher::initialize] aligning overlaps [====================] 0.005726 s +[racon::Polisher::initialize] transformed data into windows 0.000649 s +[racon::Polisher::polish] generating consensus [=> ] 0.029887 s [racon::Polisher::polish] generating consensus [==> ] 0.057683 s [racon::Polisher::polish] generating consensus [===> ] 0.086212 s [racon::Polisher::polish] generating consensus [====> ] 0.110144 s [racon::Polisher::polish] generating consensus [=====> ] 0.124207 s [racon::Polisher::polish] generating consensus [======> ] 0.140192 s [racon::Polisher::polish] generating consensus [=======> ] 0.157080 s [racon::Polisher::polish] generating consensus [========> ] 0.175904 s [racon::Polisher::polish] generating consensus [=========> ] 0.197179 s [racon::Polisher::polish] generating consensus [==========> ] 0.223637 s [racon::Polisher::polish] generating consensus [===========> ] 0.260027 s [racon::Polisher::polish] generating consensus [============> ] 0.305654 s [racon::Polisher::polish] generating consensus [=============> ] 0.375425 s [racon::Polisher::polish] generating consensus [==============> ] 0.427439 s [racon::Polisher::polish] generating consensus [===============> ] 0.478672 s [racon::Polisher::polish] generating consensus [================> ] 0.528863 s [racon::Polisher::polish] generating consensus [=================> ] 0.570480 s [racon::Polisher::polish] generating consensus [==================> ] 0.599774 s [racon::Polisher::polish] generating consensus [===================>] 0.630078 s [racon::Polisher::polish] generating consensus [====================] 0.791393 s +[racon::Polisher::] total = 0.860604 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (865 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.005949 s -[racon::Polisher::initialize] loaded sequences 0.042034 s -[racon::Polisher::initialize] loaded overlaps 0.000534 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.070598 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.112559 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.166346 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.188170 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.225581 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.252259 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.316299 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.353909 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.380111 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.400121 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.437215 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.469748 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.504181 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.521072 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.536174 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.583365 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.593596 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.593716 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.618194 s [racon::Polisher::initialize] aligning overlaps [====================] 0.620914 s -[racon::Polisher::initialize] transformed data into windows 0.002078 s -[racon::Polisher::polish] generating consensus [=> ] 0.306606 s [racon::Polisher::polish] generating consensus [==> ] 0.306730 s [racon::Polisher::polish] generating consensus [===> ] 0.517164 s [racon::Polisher::polish] generating consensus [====> ] 0.517232 s [racon::Polisher::polish] generating consensus [=====> ] 0.609745 s [racon::Polisher::polish] generating consensus [======> ] 0.610385 s [racon::Polisher::polish] generating consensus [=======> ] 0.707345 s [racon::Polisher::polish] generating consensus [========> ] 0.708036 s [racon::Polisher::polish] generating consensus [=========> ] 0.753040 s [racon::Polisher::polish] generating consensus [==========> ] 0.768769 s [racon::Polisher::polish] generating consensus [===========> ] 0.977006 s [racon::Polisher::polish] generating consensus [============> ] 1.119268 s [racon::Polisher::polish] generating consensus [=============> ] 1.412766 s [racon::Polisher::polish] generating consensus [==============> ] 1.651379 s [racon::Polisher::polish] generating consensus [===============> ] 1.692120 s [racon::Polisher::polish] generating consensus [================> ] 1.937303 s [racon::Polisher::polish] generating consensus [=================> ] 1.937335 s [racon::Polisher::polish] generating consensus [==================> ] 2.155052 s [racon::Polisher::polish] generating consensus [===================>] 2.155085 s [racon::Polisher::polish] generating consensus [====================] 2.347452 s -[racon::Polisher::] total = 3.059608 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (3234 ms) +[racon::Polisher::initialize] loaded target sequences 0.000895 s +[racon::Polisher::initialize] loaded sequences 0.038898 s +[racon::Polisher::initialize] loaded overlaps 0.000507 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.024386 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.036992 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.049344 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.063164 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.072672 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.083854 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.111178 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125728 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.137773 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148593 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.163539 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.175441 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188438 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.196154 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.211369 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.239002 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.246604 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.258324 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.274362 s [racon::Polisher::initialize] aligning overlaps [====================] 0.285237 s +[racon::Polisher::initialize] transformed data into windows 0.002290 s +[racon::Polisher::polish] generating consensus [=> ] 0.106678 s [racon::Polisher::polish] generating consensus [==> ] 0.106716 s [racon::Polisher::polish] generating consensus [===> ] 0.194136 s [racon::Polisher::polish] generating consensus [====> ] 0.194187 s [racon::Polisher::polish] generating consensus [=====> ] 0.222249 s [racon::Polisher::polish] generating consensus [======> ] 0.222884 s [racon::Polisher::polish] generating consensus [=======> ] 0.250139 s [racon::Polisher::polish] generating consensus [========> ] 0.253473 s [racon::Polisher::polish] generating consensus [=========> ] 0.288012 s [racon::Polisher::polish] generating consensus [==========> ] 0.347612 s [racon::Polisher::polish] generating consensus [===========> ] 0.387566 s [racon::Polisher::polish] generating consensus [============> ] 0.491459 s [racon::Polisher::polish] generating consensus [=============> ] 0.621761 s [racon::Polisher::polish] generating consensus [==============> ] 0.701340 s [racon::Polisher::polish] generating consensus [===============> ] 0.757626 s [racon::Polisher::polish] generating consensus [================> ] 0.824241 s [racon::Polisher::polish] generating consensus [=================> ] 0.874908 s [racon::Polisher::polish] generating consensus [==================> ] 0.911357 s [racon::Polisher::polish] generating consensus [===================>] 0.978822 s [racon::Polisher::polish] generating consensus [====================] 1.182311 s +[racon::Polisher::] total = 1.529056 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1614 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.004768 s -[racon::Polisher::initialize] loaded sequences 0.126156 s -[racon::Polisher::initialize] loaded overlaps 0.000562 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.093684 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.143423 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.205959 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.233012 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.256155 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.281005 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.345064 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.381328 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.406348 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.429880 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.461625 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.487677 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.518654 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.534262 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.559932 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.569746 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.569777 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.575731 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.583119 s [racon::Polisher::initialize] aligning overlaps [====================] 0.589546 s -[racon::Polisher::initialize] transformed data into windows 0.002206 s -[racon::Polisher::polish] generating consensus [=> ] 0.069301 s [racon::Polisher::polish] generating consensus [==> ] 0.146901 s [racon::Polisher::polish] generating consensus [===> ] 0.230622 s [racon::Polisher::polish] generating consensus [====> ] 0.230685 s [racon::Polisher::polish] generating consensus [=====> ] 3.160873 s [racon::Polisher::polish] generating consensus [======> ] 3.160910 s [racon::Polisher::polish] generating consensus [=======> ] 3.160931 s [racon::Polisher::polish] generating consensus [========> ] 3.160995 s [racon::Polisher::polish] generating consensus [=========> ] 3.161013 s [racon::Polisher::polish] generating consensus [==========> ] 3.161032 s [racon::Polisher::polish] generating consensus [===========> ] 3.165110 s [racon::Polisher::polish] generating consensus [============> ] 3.165691 s [racon::Polisher::polish] generating consensus [=============> ] 3.166116 s [racon::Polisher::polish] generating consensus [==============> ] 3.166554 s [racon::Polisher::polish] generating consensus [===============> ] 3.166974 s [racon::Polisher::polish] generating consensus [================> ] 3.167415 s [racon::Polisher::polish] generating consensus [=================> ] 3.167904 s [racon::Polisher::polish] generating consensus [==================> ] 3.168581 s [racon::Polisher::polish] generating consensus [===================>] 3.169317 s [racon::Polisher::polish] generating consensus [====================] 3.195493 s -[racon::Polisher::] total = 3.944911 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (3951 ms) +[racon::Polisher::initialize] loaded target sequences 0.000449 s +[racon::Polisher::initialize] loaded sequences 0.028604 s +[racon::Polisher::initialize] loaded overlaps 0.000354 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.038414 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.063925 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078176 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088851 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102547 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.114958 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.144675 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.159412 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.171535 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.182150 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.197262 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.210010 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.223879 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.231251 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.247972 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.273530 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.282389 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.296154 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.305402 s [racon::Polisher::initialize] aligning overlaps [====================] 0.316659 s +[racon::Polisher::initialize] transformed data into windows 0.002341 s +[racon::Polisher::polish] generating consensus [=> ] 0.028344 s [racon::Polisher::polish] generating consensus [==> ] 0.051616 s [racon::Polisher::polish] generating consensus [===> ] 0.077145 s [racon::Polisher::polish] generating consensus [====> ] 0.093190 s [racon::Polisher::polish] generating consensus [=====> ] 0.107073 s [racon::Polisher::polish] generating consensus [======> ] 0.119877 s [racon::Polisher::polish] generating consensus [=======> ] 0.132097 s [racon::Polisher::polish] generating consensus [========> ] 0.158110 s [racon::Polisher::polish] generating consensus [=========> ] 0.175405 s [racon::Polisher::polish] generating consensus [==========> ] 0.194561 s [racon::Polisher::polish] generating consensus [===========> ] 0.226708 s [racon::Polisher::polish] generating consensus [============> ] 0.267282 s [racon::Polisher::polish] generating consensus [=============> ] 0.321450 s [racon::Polisher::polish] generating consensus [==============> ] 0.373486 s [racon::Polisher::polish] generating consensus [===============> ] 0.412381 s [racon::Polisher::polish] generating consensus [================> ] 0.438504 s [racon::Polisher::polish] generating consensus [=================> ] 0.474678 s [racon::Polisher::polish] generating consensus [==================> ] 0.494609 s [racon::Polisher::polish] generating consensus [===================>] 0.524816 s [racon::Polisher::polish] generating consensus [====================] 0.582370 s +[racon::Polisher::] total = 0.947985 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (951 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.086612 s -[racon::Polisher::initialize] loaded sequences 0.082078 s -[racon::Polisher::initialize] loaded overlaps 0.048002 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.053163 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.077950 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.108824 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.141058 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.166077 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.182934 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.224959 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.238616 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.258704 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.275271 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.293693 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.320788 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.339538 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.371715 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.404578 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.416871 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.437937 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.441931 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.448290 s [racon::Polisher::initialize] aligning overlaps [====================] 0.477161 s -[racon::Polisher::initialize] transformed data into windows 0.010689 s -[racon::Polisher::polish] generating consensus [=> ] 0.052830 s [racon::Polisher::polish] generating consensus [==> ] 0.114064 s [racon::Polisher::polish] generating consensus [===> ] 0.152362 s [racon::Polisher::polish] generating consensus [====> ] 0.152602 s [racon::Polisher::polish] generating consensus [=====> ] 0.194666 s [racon::Polisher::polish] generating consensus [======> ] 0.205713 s [racon::Polisher::polish] generating consensus [=======> ] 0.222847 s [racon::Polisher::polish] generating consensus [========> ] 0.223314 s [racon::Polisher::polish] generating consensus [=========> ] 0.269543 s [racon::Polisher::polish] generating consensus [==========> ] 0.281992 s [racon::Polisher::polish] generating consensus [===========> ] 0.293624 s [racon::Polisher::polish] generating consensus [============> ] 0.304371 s [racon::Polisher::polish] generating consensus [=============> ] 0.328347 s [racon::Polisher::polish] generating consensus [==============> ] 0.329081 s [racon::Polisher::polish] generating consensus [===============> ] 0.396700 s [racon::Polisher::polish] generating consensus [================> ] 0.397389 s [racon::Polisher::polish] generating consensus [=================> ] 0.465379 s [racon::Polisher::polish] generating consensus [==================> ] 0.471769 s [racon::Polisher::polish] generating consensus [===================>] 0.482244 s [racon::Polisher::polish] generating consensus [====================] 0.490015 s -[racon::Polisher::] total = 1.200116 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1208 ms) +[racon::Polisher::initialize] loaded target sequences 0.041343 s +[racon::Polisher::initialize] loaded sequences 0.040987 s +[racon::Polisher::initialize] loaded overlaps 0.010639 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.042194 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057405 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.074815 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088926 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104160 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.119166 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.144656 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.159571 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.182302 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.200618 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.220722 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.251505 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.272892 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.298219 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.314622 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.341235 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.351567 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.354729 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.368974 s [racon::Polisher::initialize] aligning overlaps [====================] 0.390922 s +[racon::Polisher::initialize] transformed data into windows 0.004644 s +[racon::Polisher::polish] generating consensus [=> ] 0.028967 s [racon::Polisher::polish] generating consensus [==> ] 0.059001 s [racon::Polisher::polish] generating consensus [===> ] 0.087386 s [racon::Polisher::polish] generating consensus [====> ] 0.088466 s [racon::Polisher::polish] generating consensus [=====> ] 0.104942 s [racon::Polisher::polish] generating consensus [======> ] 0.115528 s [racon::Polisher::polish] generating consensus [=======> ] 0.132550 s [racon::Polisher::polish] generating consensus [========> ] 0.133139 s [racon::Polisher::polish] generating consensus [=========> ] 0.164418 s [racon::Polisher::polish] generating consensus [==========> ] 0.177701 s [racon::Polisher::polish] generating consensus [===========> ] 0.190915 s [racon::Polisher::polish] generating consensus [============> ] 0.192553 s [racon::Polisher::polish] generating consensus [=============> ] 0.208130 s [racon::Polisher::polish] generating consensus [==============> ] 0.209160 s [racon::Polisher::polish] generating consensus [===============> ] 0.243924 s [racon::Polisher::polish] generating consensus [================> ] 0.245309 s [racon::Polisher::polish] generating consensus [=================> ] 0.311781 s [racon::Polisher::polish] generating consensus [==================> ] 0.335398 s [racon::Polisher::polish] generating consensus [===================>] 0.360307 s [racon::Polisher::polish] generating consensus [====================] 0.362954 s +[racon::Polisher::] total = 0.853305 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (857 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.042532 s -[racon::Polisher::initialize] loaded sequences 0.063066 s -[racon::Polisher::initialize] loaded overlaps 0.013813 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.834347 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.138581 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.560297 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.030157 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.398065 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.805424 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.309537 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.812629 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.441359 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.947045 s [racon::Polisher::initialize] aligning overlaps [===========> ] 6.464996 s [racon::Polisher::initialize] aligning overlaps [============> ] 7.598466 s [racon::Polisher::initialize] aligning overlaps [=============> ] 8.021777 s [racon::Polisher::initialize] aligning overlaps [==============> ] 8.426398 s [racon::Polisher::initialize] aligning overlaps [===============> ] 8.916255 s [racon::Polisher::initialize] aligning overlaps [================> ] 9.640064 s [racon::Polisher::initialize] aligning overlaps [=================> ] 10.193197 s [racon::Polisher::initialize] aligning overlaps [==================> ] 10.911278 s [racon::Polisher::initialize] aligning overlaps [===================>] 11.425682 s [racon::Polisher::initialize] aligning overlaps [====================] 11.587729 s -[racon::Polisher::initialize] transformed data into windows 0.131464 s -[racon::Polisher::polish] generating consensus [=> ] 6.395322 s [racon::Polisher::polish] generating consensus [==> ] 8.134526 s [racon::Polisher::polish] generating consensus [===> ] 9.475488 s [racon::Polisher::polish] generating consensus [====> ] 10.780286 s [racon::Polisher::polish] generating consensus [=====> ] 15.893963 s [racon::Polisher::polish] generating consensus [======> ] 18.747481 s [racon::Polisher::polish] generating consensus [=======> ] 21.047700 s [racon::Polisher::polish] generating consensus [========> ] 25.684400 s [racon::Polisher::polish] generating consensus [=========> ] 26.671799 s [racon::Polisher::polish] generating consensus [==========> ] 28.094641 s [racon::Polisher::polish] generating consensus [===========> ] 33.011175 s [racon::Polisher::polish] generating consensus [============> ] 34.298671 s [racon::Polisher::polish] generating consensus [=============> ] 35.801706 s [racon::Polisher::polish] generating consensus [==============> ] 36.980662 s [racon::Polisher::polish] generating consensus [===============> ] 38.131277 s [racon::Polisher::polish] generating consensus [================> ] 43.065572 s [racon::Polisher::polish] generating consensus [=================> ] 45.322104 s [racon::Polisher::polish] generating consensus [==================> ] 46.922431 s [racon::Polisher::polish] generating consensus [===================>] 48.150931 s [racon::Polisher::polish] generating consensus [====================] 52.977443 s -[racon::Polisher::] total = 64.821952 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (64825 ms) +[racon::Polisher::initialize] loaded target sequences 0.043962 s +[racon::Polisher::initialize] loaded sequences 0.040740 s +[racon::Polisher::initialize] loaded overlaps 0.011402 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.388485 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.676225 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.922247 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.241674 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.525061 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.713192 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.006109 s [racon::Polisher::initialize] aligning overlaps [========> ] 2.314637 s [racon::Polisher::initialize] aligning overlaps [=========> ] 2.574978 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.767914 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.936740 s [racon::Polisher::initialize] aligning overlaps [============> ] 3.164164 s [racon::Polisher::initialize] aligning overlaps [=============> ] 3.419071 s [racon::Polisher::initialize] aligning overlaps [==============> ] 3.647593 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.882951 s [racon::Polisher::initialize] aligning overlaps [================> ] 4.161583 s [racon::Polisher::initialize] aligning overlaps [=================> ] 4.430276 s [racon::Polisher::initialize] aligning overlaps [==================> ] 4.587573 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.769079 s [racon::Polisher::initialize] aligning overlaps [====================] 4.828056 s +[racon::Polisher::initialize] transformed data into windows 0.049576 s +[racon::Polisher::polish] generating consensus [=> ] 0.950162 s [racon::Polisher::polish] generating consensus [==> ] 1.667818 s [racon::Polisher::polish] generating consensus [===> ] 2.954449 s [racon::Polisher::polish] generating consensus [====> ] 4.430569 s [racon::Polisher::polish] generating consensus [=====> ] 5.925219 s [racon::Polisher::polish] generating consensus [======> ] 6.826375 s [racon::Polisher::polish] generating consensus [=======> ] 7.687094 s [racon::Polisher::polish] generating consensus [========> ] 8.359177 s [racon::Polisher::polish] generating consensus [=========> ] 8.957610 s [racon::Polisher::polish] generating consensus [==========> ] 9.638532 s [racon::Polisher::polish] generating consensus [===========> ] 10.476157 s [racon::Polisher::polish] generating consensus [============> ] 11.087183 s [racon::Polisher::polish] generating consensus [=============> ] 11.652485 s [racon::Polisher::polish] generating consensus [==============> ] 12.279097 s [racon::Polisher::polish] generating consensus [===============> ] 13.017440 s [racon::Polisher::polish] generating consensus [================> ] 13.534295 s [racon::Polisher::polish] generating consensus [=================> ] 14.408842 s [racon::Polisher::polish] generating consensus [==================> ] 15.029462 s [racon::Polisher::polish] generating consensus [===================>] 15.604426 s [racon::Polisher::polish] generating consensus [====================] 15.863875 s +[racon::Polisher::] total = 20.840526 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (20844 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.029227 s -[racon::Polisher::initialize] loaded sequences 0.021812 s -[racon::Polisher::initialize] loaded overlaps 0.029710 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.885436 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.186509 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.486381 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.070323 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.526760 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.949693 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.441600 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.000410 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.146916 s [racon::Polisher::initialize] aligning overlaps [==========> ] 8.655098 s [racon::Polisher::initialize] aligning overlaps [===========> ] 8.979523 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.753848 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.226911 s [racon::Polisher::initialize] aligning overlaps [==============> ] 10.706852 s [racon::Polisher::initialize] aligning overlaps [===============> ] 11.200353 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.706853 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.222568 s [racon::Polisher::initialize] aligning overlaps [==================> ] 12.642179 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.128126 s [racon::Polisher::initialize] aligning overlaps [====================] 16.886887 s -[racon::Polisher::initialize] transformed data into windows 0.021225 s -[racon::Polisher::polish] generating consensus [=> ] 2.272747 s [racon::Polisher::polish] generating consensus [==> ] 4.046883 s [racon::Polisher::polish] generating consensus [===> ] 10.037569 s [racon::Polisher::polish] generating consensus [====> ] 11.038805 s [racon::Polisher::polish] generating consensus [=====> ] 12.924976 s [racon::Polisher::polish] generating consensus [======> ] 19.489970 s [racon::Polisher::polish] generating consensus [=======> ] 21.010227 s [racon::Polisher::polish] generating consensus [========> ] 22.138499 s [racon::Polisher::polish] generating consensus [=========> ] 27.617222 s [racon::Polisher::polish] generating consensus [==========> ] 30.125308 s [racon::Polisher::polish] generating consensus [===========> ] 35.714485 s [racon::Polisher::polish] generating consensus [============> ] 37.848159 s [racon::Polisher::polish] generating consensus [=============> ] 39.619655 s [racon::Polisher::polish] generating consensus [==============> ] 44.648549 s [racon::Polisher::polish] generating consensus [===============> ] 46.893865 s [racon::Polisher::polish] generating consensus [================> ] 47.720216 s [racon::Polisher::polish] generating consensus [=================> ] 54.443182 s [racon::Polisher::polish] generating consensus [==================> ] 56.879398 s [racon::Polisher::polish] generating consensus [===================>] 57.957402 s [racon::Polisher::polish] generating consensus [====================] 58.446340 s -[racon::Polisher::] total = 75.438880 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (75446 ms) +[racon::Polisher::initialize] loaded target sequences 0.017429 s +[racon::Polisher::initialize] loaded sequences 0.020562 s +[racon::Polisher::initialize] loaded overlaps 0.011873 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.436509 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.880555 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.439509 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.042344 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.477602 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.890998 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.281984 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.701573 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.127971 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.575845 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.054446 s [racon::Polisher::initialize] aligning overlaps [============> ] 5.714122 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.312900 s [racon::Polisher::initialize] aligning overlaps [==============> ] 6.848401 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.515764 s [racon::Polisher::initialize] aligning overlaps [================> ] 8.274753 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.602305 s [racon::Polisher::initialize] aligning overlaps [==================> ] 8.847940 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.124128 s [racon::Polisher::initialize] aligning overlaps [====================] 9.335397 s +[racon::Polisher::initialize] transformed data into windows 0.027262 s +[racon::Polisher::polish] generating consensus [=> ] 2.801200 s [racon::Polisher::polish] generating consensus [==> ] 4.347094 s [racon::Polisher::polish] generating consensus [===> ] 5.946809 s [racon::Polisher::polish] generating consensus [====> ] 6.839801 s [racon::Polisher::polish] generating consensus [=====> ] 8.687132 s [racon::Polisher::polish] generating consensus [======> ] 11.619253 s [racon::Polisher::polish] generating consensus [=======> ] 13.137592 s [racon::Polisher::polish] generating consensus [========> ] 14.212088 s [racon::Polisher::polish] generating consensus [=========> ] 15.291333 s [racon::Polisher::polish] generating consensus [==========> ] 16.822431 s [racon::Polisher::polish] generating consensus [===========> ] 18.455995 s [racon::Polisher::polish] generating consensus [============> ] 21.167850 s [racon::Polisher::polish] generating consensus [=============> ] 23.232942 s [racon::Polisher::polish] generating consensus [==============> ] 25.639003 s [racon::Polisher::polish] generating consensus [===============> ] 27.339688 s [racon::Polisher::polish] generating consensus [================> ] 28.550967 s [racon::Polisher::polish] generating consensus [=================> ] 32.906274 s [racon::Polisher::polish] generating consensus [==================> ] 34.282378 s [racon::Polisher::polish] generating consensus [===================>] 34.717637 s [racon::Polisher::polish] generating consensus [====================] 35.025322 s +[racon::Polisher::] total = 44.441917 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (44445 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.071332 s -[racon::Polisher::initialize] loaded sequences 0.065617 s -[racon::Polisher::initialize] loaded overlaps 0.027341 s -[racon::Polisher::initialize] aligning overlaps [=> ] 5.152538 s [racon::Polisher::initialize] aligning overlaps [==> ] 5.658219 s [racon::Polisher::initialize] aligning overlaps [===> ] 6.034731 s [racon::Polisher::initialize] aligning overlaps [====> ] 6.563861 s [racon::Polisher::initialize] aligning overlaps [=====> ] 6.919265 s [racon::Polisher::initialize] aligning overlaps [======> ] 7.259300 s [racon::Polisher::initialize] aligning overlaps [=======> ] 7.698858 s [racon::Polisher::initialize] aligning overlaps [========> ] 8.154712 s [racon::Polisher::initialize] aligning overlaps [=========> ] 8.660508 s [racon::Polisher::initialize] aligning overlaps [==========> ] 9.215319 s [racon::Polisher::initialize] aligning overlaps [===========> ] 9.501014 s [racon::Polisher::initialize] aligning overlaps [============> ] 9.853176 s [racon::Polisher::initialize] aligning overlaps [=============> ] 10.245473 s [racon::Polisher::initialize] aligning overlaps [==============> ] 13.537583 s [racon::Polisher::initialize] aligning overlaps [===============> ] 13.882934 s [racon::Polisher::initialize] aligning overlaps [================> ] 14.112041 s [racon::Polisher::initialize] aligning overlaps [=================> ] 14.289259 s [racon::Polisher::initialize] aligning overlaps [==================> ] 14.558304 s [racon::Polisher::initialize] aligning overlaps [===================>] 14.842220 s [racon::Polisher::initialize] aligning overlaps [====================] 14.934230 s -[racon::Polisher::initialize] transformed data into windows 0.138362 s -[racon::Polisher::polish] generating consensus [=> ] 1.487220 s [racon::Polisher::polish] generating consensus [==> ] 2.371857 s [racon::Polisher::polish] generating consensus [===> ] 3.243558 s [racon::Polisher::polish] generating consensus [====> ] 5.006013 s [racon::Polisher::polish] generating consensus [=====> ] 8.334326 s [racon::Polisher::polish] generating consensus [======> ] 10.221700 s [racon::Polisher::polish] generating consensus [=======> ] 11.754733 s [racon::Polisher::polish] generating consensus [========> ] 17.342099 s [racon::Polisher::polish] generating consensus [=========> ] 18.509783 s [racon::Polisher::polish] generating consensus [==========> ] 19.688482 s [racon::Polisher::polish] generating consensus [===========> ] 20.637740 s [racon::Polisher::polish] generating consensus [============> ] 26.111682 s [racon::Polisher::polish] generating consensus [=============> ] 27.250788 s [racon::Polisher::polish] generating consensus [==============> ] 28.860278 s [racon::Polisher::polish] generating consensus [===============> ] 34.806751 s [racon::Polisher::polish] generating consensus [================> ] 35.810131 s [racon::Polisher::polish] generating consensus [=================> ] 37.169867 s [racon::Polisher::polish] generating consensus [==================> ] 37.976564 s [racon::Polisher::polish] generating consensus [===================>] 38.463296 s [racon::Polisher::polish] generating consensus [====================] 38.958325 s -[racon::Polisher::] total = 54.200847 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (54211 ms) -[----------] 10 tests from RaconPolishingTest (211594 ms total) +[racon::Polisher::initialize] loaded target sequences 0.043005 s +[racon::Polisher::initialize] loaded sequences 0.043675 s +[racon::Polisher::initialize] loaded overlaps 0.013254 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.622518 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.029882 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.291677 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.645456 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.952419 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.202100 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.740742 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.151788 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.529385 s [racon::Polisher::initialize] aligning overlaps [==========> ] 3.909875 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.202376 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.618428 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.028139 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.280573 s [racon::Polisher::initialize] aligning overlaps [===============> ] 5.579544 s [racon::Polisher::initialize] aligning overlaps [================> ] 5.952328 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.290834 s [racon::Polisher::initialize] aligning overlaps [==================> ] 6.663504 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.026377 s [racon::Polisher::initialize] aligning overlaps [====================] 7.131168 s +[racon::Polisher::initialize] transformed data into windows 0.071440 s +[racon::Polisher::polish] generating consensus [=> ] 1.076457 s [racon::Polisher::polish] generating consensus [==> ] 1.780364 s [racon::Polisher::polish] generating consensus [===> ] 2.530509 s [racon::Polisher::polish] generating consensus [====> ] 3.006256 s [racon::Polisher::polish] generating consensus [=====> ] 3.657916 s [racon::Polisher::polish] generating consensus [======> ] 4.276038 s [racon::Polisher::polish] generating consensus [=======> ] 4.883625 s [racon::Polisher::polish] generating consensus [========> ] 5.348738 s [racon::Polisher::polish] generating consensus [=========> ] 5.909224 s [racon::Polisher::polish] generating consensus [==========> ] 6.586006 s [racon::Polisher::polish] generating consensus [===========> ] 7.163967 s [racon::Polisher::polish] generating consensus [============> ] 7.774173 s [racon::Polisher::polish] generating consensus [=============> ] 8.308797 s [racon::Polisher::polish] generating consensus [==============> ] 8.906062 s [racon::Polisher::polish] generating consensus [===============> ] 9.629527 s [racon::Polisher::polish] generating consensus [================> ] 10.147361 s [racon::Polisher::polish] generating consensus [=================> ] 11.130719 s [racon::Polisher::polish] generating consensus [==================> ] 12.312540 s [racon::Polisher::polish] generating consensus [===================>] 13.187448 s [racon::Polisher::polish] generating consensus [====================] 13.748341 s +[racon::Polisher::] total = 21.054956 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (21059 ms) +[----------] 10 tests from RaconPolishingTest (93634 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (211649 ms total) +[==========] 15 tests from 2 test suites ran. (93658 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -771,12 +807,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/919295/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1592967 and its subdirectories -I: Current time: Sat Nov 14 00:11:35 -12 2026 -I: pbuilder-time-stamp: 1794658295 +I: removing directory /srv/workspace/pbuilder/919295 and its subdirectories +I: Current time: Sun Oct 12 19:52:56 +14 2025 +I: pbuilder-time-stamp: 1760248376