Diff of the two buildlogs: -- --- b1/build.log 2025-11-02 14:24:28.497196183 +0000 +++ b2/build.log 2025-11-02 14:36:07.433710789 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 2 02:11:04 -12 2025 -I: pbuilder-time-stamp: 1762092664 +I: Current time: Sun Dec 6 10:47:29 +14 2026 +I: pbuilder-time-stamp: 1796503649 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -31,53 +31,85 @@ dpkg-source: info: applying doxygen_longtabu I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/538171/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 5 20:47 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='5bbdd0f2121141f2ad90d9b5f4d9a81b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='538171' - PS1='# ' - PS2='> ' + INVOCATION_ID=f420c29ace6848eca716d0ef28c73d78 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4052193 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6LsKPIBx/pbuilderrc_mC2v --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6LsKPIBx/b1 --logfile b1/build.log seqan-raptor_3.0.1+ds-10.dsc' - SUDO_GID='110' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6LsKPIBx/pbuilderrc_rSeF --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6LsKPIBx/b2 --logfile b2/build.log seqan-raptor_3.0.1+ds-10.dsc' + SUDO_GID=110 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/538171/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -90,7 +122,7 @@ Depends: debhelper-compat (= 13), architecture-is-little-endian, architecture-is-64-bit, cmake, libseqan3-dev (>= 3.4.0~rc.3), libgtest-dev, libxxhash-dev, libcereal-dev, libsimde-dev, libyaml-cpp-dev, pkgconf, doxygen, cppreference-doc-en-html, texlive-font-utils, texlive-latex-base, texlive-latex-recommended, texlive-latex-extra, texlive-plain-generic, texlive-fonts-recommended, ghostscript dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19869 files and directories currently installed.) +(Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -338,10 +370,10 @@ Get: 185 http://deb.debian.org/debian forky/main amd64 texlive-pictures all 2025.20250927-4 [23.6 MB] Get: 186 http://deb.debian.org/debian forky/main amd64 texlive-latex-extra all 2025.20250927-3 [27.7 MB] Get: 187 http://deb.debian.org/debian forky/main amd64 texlive-plain-generic all 2025.20250927-3 [29.9 MB] -Fetched 336 MB in 8s (42.9 MB/s) +Fetched 336 MB in 17s (20.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.3-1) ... Selecting previously unselected package poppler-data. @@ -357,7 +389,7 @@ Setting up libexpat1:amd64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20737 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20730 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_amd64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. @@ -393,7 +425,7 @@ Unpacking libpython3-stdlib:amd64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21752 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21745 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:amd64. @@ -963,8 +995,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Nov 2 14:16:58 UTC 2025. -Universal Time is now: Sun Nov 2 14:16:58 UTC 2025. +Local time is now: Sat Dec 5 20:49:54 UTC 2026. +Universal Time is now: Sat Dec 5 20:49:54 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:amd64 (1:1.1.8-1+b2) ... @@ -1131,7 +1163,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seqan-raptor-3.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan-raptor_3.0.1+ds-10_source.changes +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seqan-raptor-3.0.1+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seqan-raptor_3.0.1+ds-10_source.changes dpkg-buildpackage: info: source package seqan-raptor dpkg-buildpackage: info: source version 3.0.1+ds-10 dpkg-buildpackage: info: source distribution unstable @@ -1143,10 +1179,6 @@ debian/rules override_dh_auto_clean-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_clean -dh_auto_clean --sourcedirectory=test/unit --builddirectory build_unit -#dh_auto_clean --sourcedirectory=test/performance --builddirectory build_performance -#dh_auto_clean --sourcedirectory=test/header --builddirectory build_header -dh_auto_clean --sourcedirectory=test/snippet --builddirectory build_snippet make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_clean-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' @@ -1160,7 +1192,7 @@ debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_configure -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF - cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF .. + cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF .. -- The CXX compiler identification is GNU 15.2.0 -- The C compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info @@ -1199,11 +1231,12 @@ -- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") -- Checking for module 'libxxhash' -- Found libxxhash, version 0.8.3 --- Configuring done (3.0s) +-- Configuring done (4.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR @@ -1212,121 +1245,11 @@ -- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu -dh_auto_configure --sourcedirectory=test/unit --builddirectory build_unit -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF - cd build_unit && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/unit --- The CXX compiler identification is GNU 15.2.0 --- The C compiler identification is GNU 15.2.0 --- Detecting CXX compiler ABI info --- Detecting CXX compiler ABI info - done --- Check for working CXX compiler: /usr/bin/c++ - skipped --- Detecting CXX compile features --- Detecting CXX compile features - done --- Detecting C compiler ABI info --- Detecting C compiler ABI info - done --- Check for working C compiler: /usr/bin/cc - skipped --- Detecting C compile features --- Detecting C compile features - done --- Finding RAPTOR and checking requirements: --- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include --- Detected as running from a repository checkout… --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include --- C++ Standard-20 support: builtin --- OpenMP Support: via -fopenmp --- SIMD-OpenMP Support: via -fopenmp-simd --- Suppressing GCC 4 warnings: via -Wno-psabi --- Optimize build: via -mpopcnt --- Link Time Optimization: enabled --- Binary-stripping: disabled --- Thread support: builtin --- Optional dependency: ZLIB-1.3.1 found --- Optional dependency: BZip2-1.0.8 found --- Optional dependency: libexecinfo found --- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include --- Finding program ccache --- Finding program ccache - Failed --- You can run `make` to build the application. --- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") --- Checking for module 'libxxhash' --- Found libxxhash, version 0.8.3 --- Test dependency: Google Test 1.17.0 found. --- Configuring done (4.2s) --- Generating done (0.2s) -CMake Warning: - Manually-specified variables were not used by the project: - - CMAKE_EXPORT_NO_PACKAGE_REGISTRY - CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY - CMAKE_INSTALL_LOCALSTATEDIR - CMAKE_INSTALL_RUNSTATEDIR - CMAKE_INSTALL_SYSCONFDIR - - --- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit -#dh_auto_configure --sourcedirectory=test/performance --builddirectory build_performance -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF -#dh_auto_configure --sourcedirectory=test/header --builddirectory build_header -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF -dh_auto_configure --sourcedirectory=test/snippet --builddirectory build_snippet -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF - cd build_snippet && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF ../test/snippet --- The CXX compiler identification is GNU 15.2.0 --- The C compiler identification is GNU 15.2.0 --- Detecting CXX compiler ABI info --- Detecting CXX compiler ABI info - done --- Check for working CXX compiler: /usr/bin/c++ - skipped --- Detecting CXX compile features --- Detecting CXX compile features - done --- Detecting C compiler ABI info --- Detecting C compiler ABI info - done --- Check for working C compiler: /usr/bin/cc - skipped --- Detecting C compile features --- Detecting C compile features - done --- Finding RAPTOR and checking requirements: --- RAPTOR include dir found: /build/reproducible-path/seqan-raptor-3.0.1+ds/include --- Detected as running from a repository checkout… --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include --- …adding submodule include: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include --- C++ Standard-20 support: builtin --- OpenMP Support: via -fopenmp --- SIMD-OpenMP Support: via -fopenmp-simd --- Suppressing GCC 4 warnings: via -Wno-psabi --- Optimize build: via -mpopcnt --- Link Time Optimization: enabled --- Binary-stripping: disabled --- Thread support: builtin --- Optional dependency: ZLIB-1.3.1 found --- Optional dependency: BZip2-1.0.8 found --- Optional dependency: libexecinfo found --- Found Raptor: /build/reproducible-path/seqan-raptor-3.0.1+ds/include --- Finding program ccache --- Finding program ccache - Failed --- You can run `make` to build the application. --- Found PkgConfig: /usr/bin/pkg-config (found version "1.8.1") --- Checking for module 'libxxhash' --- Found libxxhash, version 0.8.3 --- Test dependency: Google Test 1.17.0 found. --- Configuring done (2.9s) --- Generating done (0.0s) -CMake Warning: - Manually-specified variables were not used by the project: - - CMAKE_EXPORT_NO_PACKAGE_REGISTRY - CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY - CMAKE_INSTALL_LOCALSTATEDIR - CMAKE_INSTALL_RUNSTATEDIR - CMAKE_INSTALL_SYSCONFDIR - - --- Build files have been written to: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_configure --sourcedirectory=test/documentation --builddirectory doc_build -- -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON - cd doc_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON ../test/documentation + cd doc_build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DRAPTOR_NATIVE_BUILD=OFF -DRAPTOR_SUBMODULES_DIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/lib -DRAPTOR_STRIP_BINARY=OFF -Dbuild_search=ON ../test/documentation CMake Deprecation Warning at CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. @@ -1341,11 +1264,12 @@ -- Could not find dot tool. Disabling dot support. -- Configuring doc. -- Add doc test. --- Configuring done (0.1s) --- Generating done (0.2s) +-- Configuring done (0.2s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: + BUILD_TESTING CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED @@ -1360,7 +1284,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --arch - cd obj-x86_64-linux-gnu && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1391,93 +1315,93 @@ make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build -make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build +make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build +make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build +make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build -make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 1%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -[ 3%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -[ 3%] Built target xxhash_project -[ 5%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -[ 7%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o +[ 1%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o +[ 1%] Built target xxhash_project +[ 3%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o +[ 5%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o [ 9%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -[ 11%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -MF CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o.d -o CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade/raptor_upgrade.cpp +[ 9%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o +[ 13%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o +[ 17%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o +[ 17%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o +[ 17%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/depend cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/prepare && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -MF CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o.d -o CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare/compute_minimiser.cpp -[ 21%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -[ 21%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -[ 21%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o -[ 21%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -[ 23%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -[ 23%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/parse_bin_path.cpp -[ 25%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -[ 27%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp +[ 21%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o +[ 21%] Building CXX object src/upgrade/CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/multiple_error_model.cpp +[ 25%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o +[ 25%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o +[ 29%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o +[ 29%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/DependInfo.cmake "--color=" -[ 31%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -[ 31%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -[ 39%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp -[ 41%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -[ 39%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o -MF CMakeFiles/raptor_search.dir/raptor_search.cpp.o.d -o CMakeFiles/raptor_search.dir/raptor_search.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/raptor_search.cpp -[ 45%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/init_shared_meta.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/bin_size_in_bits.cpp -[ 39%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -[ 47%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -[ 47%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -[ 39%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -[ 49%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -[ 50%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp +[ 35%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o +[ 35%] Building CXX object src/search/CMakeFiles/raptor_search.dir/raptor_search.cpp.o +[ 35%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o +[ 41%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o +[ 41%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o +[ 41%] Building CXX object src/search/CMakeFiles/raptor_search.dir/search_ibf.cpp.o +[ 43%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o +[ 45%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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src/build/hibf/CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp +[ 50%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem 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/build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_ibf.cpp -[ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -[ 56%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -[ 56%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp +[ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o +[ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o +[ 56%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem 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-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_hibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_hibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_hibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_hibf.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_indirect_error_model.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -MF CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o.d -o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/pascal_row.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp -[ 58%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/search_parsing.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include 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CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp +[ 60%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/prepare_parsing.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -MF CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o.d -o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/one_error_model.cpp +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT 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-fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp -[ 60%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/compute_kmers.cpp -cd 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/threshold/CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -MF CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o.d -o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_threshold.cpp -[ 62%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem 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CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold/precompute_correction.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem 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-I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp -[ 64%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem 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src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp +[ 64%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 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-DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt 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-ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' @@ -1499,7 +1423,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ @@ -1512,7 +1436,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ @@ -1551,7 +1475,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ @@ -1564,7 +1488,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ @@ -1577,7 +1501,7 @@ | ^~~~~~~~ In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 20 | : public T, public std::iterator { | ^~~~~~~~ @@ -1607,8 +1531,8 @@ /usr/bin/ranlib ../../lib/libraptor_threshold.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 68%] Built target raptor_threshold -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1619,8 +1543,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1643,8 +1567,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1655,8 +1579,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1667,8 +1591,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1679,8 +1603,8 @@ /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: +In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, + from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ @@ -1704,18 +1628,18 @@ make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 74%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o +[ 72%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp [ 74%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -[ 76%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp -[ 78%] Linking CXX static library ../../../lib/libchopper_layout_lib.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 -[ 80%] Linking CXX static library ../../../lib/libraptor_build_hibf.a +[ 76%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp +[ 78%] Linking CXX static library ../../../lib/libraptor_build_hibf.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 +[ 80%] Linking CXX static library ../../../lib/libchopper_layout_lib.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 /usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o /usr/bin/ranlib ../../../lib/libchopper_layout_lib.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' @@ -1727,10 +1651,10 @@ make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build +make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build +make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' [ 82%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o [ 84%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o @@ -1739,10 +1663,14 @@ /usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o /usr/bin/ranlib ../../../lib/libraptor_build_hibf.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 84%] Built target raptor_build_hibf [ 86%] Linking CXX static library ../../lib/libraptor_search.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 +[ 86%] Built target raptor_build_hibf +/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o +/usr/bin/ranlib ../../lib/libraptor_search.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 86%] Built target raptor_search In file included from /usr/include/simde/x86/mmx.h:30, from /usr/include/simde/x86/sse.h:33, from /usr/include/simde/x86/avx.h:28, @@ -1756,34 +1684,30 @@ /usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ 616 | typedef SIMDE_POLY128_TYPE simde_poly128; | ^~~~~~~~~~~~~~~~~~ -/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -/usr/bin/ranlib ../../lib/libraptor_search.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 86%] Built target raptor_search -[ 88%] Linking CXX static library ../../lib/libraptor_build.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -/usr/bin/ranlib ../../lib/libraptor_build.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 88%] Built target raptor_build -[ 90%] Linking CXX static library ../../lib/libraptor_upgrade.a +[ 88%] Linking CXX static library ../../lib/libraptor_upgrade.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 /usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o /usr/bin/ranlib ../../lib/libraptor_upgrade.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 90%] Linking CXX static library ../../lib/libraptor_build.a +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake +cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 [ 90%] Built target raptor_upgrade +/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o +/usr/bin/ranlib ../../lib/libraptor_build.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 90%] Built target raptor_build [ 92%] Linking CXX static library ../../lib/libraptor_argument_parsing.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' -[ 92%] Built target raptor_argument_parsing [ 94%] Linking CXX static library ../../lib/libraptor_layout.a cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake cd /build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 +/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a CMakeFiles/raptor_argument_parsing.dir/__/build/hibf/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o +/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a +make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' +[ 94%] Built target raptor_argument_parsing /usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o /usr/bin/ranlib ../../lib/libraptor_layout.a make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' @@ -1820,1149 +1744,11 @@ obj-*/bin/raptor layout --export-help cwl > debian/raptor-layout.cwl obj-*/bin/raptor prepare --export-help cwl > debian/raptor-prepare.cwl obj-*/bin/raptor upgrade --export-help cwl > debian/raptor-upgrade.cwl -dh_auto_build --arch --builddirectory build_unit - cd build_unit && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -/usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit -B/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit --check-build-system CMakeFiles/Makefile.cmake 0 -/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit//CMakeFiles/progress.marks -make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend -make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend -make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade/CMakeFiles/raptor_upgrade.dir/DependInfo.cmake "--color=" -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/DependInfo.cmake "--color=" -make -f src/search/CMakeFiles/raptor_search.dir/build.make src/search/CMakeFiles/raptor_search.dir/depend -make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare/CMakeFiles/raptor_prepare.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf/CMakeFiles/raptor_build_hibf.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search/CMakeFiles/raptor_search.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold/CMakeFiles/raptor_threshold.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Nothing to be done for '_deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build'. -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/threshold/CMakeFiles/raptor_threshold.dir/build.make src/threshold/CMakeFiles/raptor_threshold.dir/build -make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/search/CMakeFiles/raptor_search.dir/build.make 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-Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 43%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/algorithm:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /usr/include/simde/x86/mmx.h:30, - from /usr/include/simde/x86/sse.h:33, - from /usr/include/simde/x86/avx.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: -/usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] - 610 | # define SIMDE_POLY128_TYPE __int128 - | ^~~~~~~~ -/usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ - 616 | typedef SIMDE_POLY128_TYPE simde_poly128; - | ^~~~~~~~~~~~~~~~~~ -[ 44%] Linking CXX static library ../../lib/libraptor_threshold.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -/usr/bin/ranlib ../../lib/libraptor_threshold.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 44%] Built target raptor_threshold -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 45%] Linking CXX static library ../../lib/libraptor_prepare.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -/usr/bin/ranlib ../../lib/libraptor_prepare.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 45%] Built target raptor_prepare -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 49%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -[ 49%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -[ 49%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp -[ 50%] Linking CXX static library ../../../lib/libraptor_build_hibf.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 50%] Built target raptor_build_hibf -[ 51%] Linking CXX static library ../../../lib/libchopper_layout_lib.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -/usr/bin/ranlib ../../../lib/libchopper_layout_lib.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 51%] Built target chopper_layout_lib -make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 54%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -[ 54%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp -[ 55%] Linking CXX static library ../../lib/libraptor_search.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -/usr/bin/ranlib ../../lib/libraptor_search.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 55%] Built target raptor_search -In file included from /usr/include/simde/x86/mmx.h:30, - from /usr/include/simde/x86/sse.h:33, - from /usr/include/simde/x86/avx.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/data_store.hpp:8, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp:6: -/usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] - 610 | # define SIMDE_POLY128_TYPE __int128 - | ^~~~~~~~ -/usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ - 616 | typedef SIMDE_POLY128_TYPE simde_poly128; - | ^~~~~~~~~~~~~~~~~~ -[ 56%] Linking CXX static library ../../lib/libraptor_build.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -/usr/bin/ranlib ../../lib/libraptor_build.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 56%] Built target raptor_build -[ 58%] Linking CXX static library ../../lib/libraptor_upgrade.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -/usr/bin/ranlib ../../lib/libraptor_upgrade.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 58%] Built target raptor_upgrade -[ 59%] Linking CXX static library ../../lib/libraptor_argument_parsing.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 59%] Built target raptor_argument_parsing -[ 60%] Linking CXX static library ../../lib/libraptor_layout.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -/usr/bin/ranlib ../../lib/libraptor_layout.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 60%] Built target raptor_layout -make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 62%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp -[ 63%] Linking CXX executable ../bin/raptor -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/raptor.dir/link.d CMakeFiles/raptor.dir/raptor.cpp.o -o ../bin/raptor ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libxxhash.a /usr/lib/x86_64-linux-gnu/libxxhash.so -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 63%] Built target raptor -make -f api/CMakeFiles/issue_142.dir/build.make api/CMakeFiles/issue_142.dir/depend -make -f api/CMakeFiles/memory_usage.dir/build.make api/CMakeFiles/memory_usage.dir/depend -make -f api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/depend -make -f cli/argument_parsing/CMakeFiles/options_test.dir/build.make cli/argument_parsing/CMakeFiles/options_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/issue_142.dir/DependInfo.cmake "--color=" -make -f cli/build/CMakeFiles/build_hibf_chopper_test.dir/build.make cli/build/CMakeFiles/build_hibf_chopper_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/depend -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/memory_usage.dir/DependInfo.cmake "--color=" -make -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make cli/build/CMakeFiles/build_ibf_compressed_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/CMakeFiles/validate_shape.dir/DependInfo.cmake "--color=" -make -f cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build.make cli/build/CMakeFiles/build_ibf_partitioned_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing/CMakeFiles/options_test.dir/DependInfo.cmake "--color=" -make -f cli/build/CMakeFiles/build_ibf_test.dir/build.make cli/build/CMakeFiles/build_ibf_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_hibf_chopper_test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_hibf_test.dir/DependInfo.cmake "--color=" -make -f cli/search/CMakeFiles/search_hibf_test.dir/build.make cli/search/CMakeFiles/search_hibf_test.dir/depend -make -f cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_ibf_compressed_test.dir/DependInfo.cmake "--color=" -make -f cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/build.make cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_ibf_partitioned_test.dir/DependInfo.cmake "--color=" -make -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/CMakeFiles/build_ibf_test.dir/DependInfo.cmake "--color=" -make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_hibf_test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_ibf_preprocessing_test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/CMakeFiles/search_ibf_test.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade/CMakeFiles/upgrade_test.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f api/CMakeFiles/issue_142.dir/build.make api/CMakeFiles/issue_142.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f api/CMakeFiles/memory_usage.dir/build.make api/CMakeFiles/memory_usage.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f api/CMakeFiles/validate_shape.dir/build.make api/CMakeFiles/validate_shape.dir/build -make -f cli/argument_parsing/CMakeFiles/options_test.dir/build.make cli/argument_parsing/CMakeFiles/options_test.dir/build -make -f cli/build/CMakeFiles/build_hibf_test.dir/build.make cli/build/CMakeFiles/build_hibf_test.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/build/CMakeFiles/build_ibf_compressed_test.dir/build.make 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'/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/build/CMakeFiles/build_hibf_chopper_test.dir/build.make cli/build/CMakeFiles/build_hibf_chopper_test.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/search/CMakeFiles/search_ibf_test.dir/build.make cli/search/CMakeFiles/search_ibf_test.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make -f cli/upgrade/CMakeFiles/upgrade_test.dir/build.make cli/upgrade/CMakeFiles/upgrade_test.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 67%] Building CXX object api/CMakeFiles/validate_shape.dir/validate_shape.cpp.o -[ 67%] Building CXX object api/CMakeFiles/issue_142.dir/issue_142.cpp.o -[ 67%] Building CXX object api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o -[ 68%] Building CXX object cli/argument_parsing/CMakeFiles/options_test.dir/options_test.cpp.o -[ 69%] Building CXX object cli/build/CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -[ 70%] Building CXX object cli/build/CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -[ 73%] Building CXX object cli/build/CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -[ 73%] Building CXX object cli/search/CMakeFiles/search_hibf_preprocessing_test.dir/search_hibf_preprocessing_test.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 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-DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT api/CMakeFiles/memory_usage.dir/memory_usage.cpp.o -MF CMakeFiles/memory_usage.dir/memory_usage.cpp.o.d -o CMakeFiles/memory_usage.dir/memory_usage.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/api/memory_usage.cpp -[ 74%] Building CXX object cli/build/CMakeFiles/build_ibf_compressed_test.dir/build_ibf_compressed_test.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT cli/search/CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -MF CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o.d -o CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/unit/cli/search/search_hibf_test.cpp -[ 79%] Building CXX object cli/build/CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -[ 79%] Building CXX object cli/search/CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -[ 81%] Building CXX object cli/upgrade/CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search && /usr/bin/c++ 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/memory_usage.dir/link.d CMakeFiles/memory_usage.dir/memory_usage.cpp.o -o memory_usage ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a ../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 83%] Built target memory_usage -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/issue_142.dir/link.d CMakeFiles/issue_142.dir/issue_142.cpp.o -o issue_142 ../lib/libraptor_argument_parsing.a ../lib/libraptor_build.a ../lib/libraptor_build_hibf.a ../lib/libraptor_prepare.a ../lib/libraptor_search.a ../lib/libraptor_threshold.a ../lib/libraptor_upgrade.a 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-ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_partitioned_test.dir/link.d CMakeFiles/build_ibf_partitioned_test.dir/build_ibf_partitioned_test.cpp.o -o build_ibf_partitioned_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_ibf_test.dir/link.d CMakeFiles/search_ibf_test.dir/search_ibf_test.cpp.o -o search_ibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target build_ibf_partitioned_test -[ 97%] Built target search_ibf_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_hibf_chopper_test.dir/link.d CMakeFiles/build_hibf_chopper_test.dir/build_hibf_chopper_test.cpp.o -o build_hibf_chopper_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/options_test.dir/link.d CMakeFiles/options_test.dir/options_test.cpp.o -o options_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target options_test -[ 97%] Built target build_hibf_chopper_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/upgrade_test.dir/link.d CMakeFiles/upgrade_test.dir/upgrade_test.cpp.o -o upgrade_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target upgrade_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_ibf_test.dir/link.d CMakeFiles/build_ibf_test.dir/build_ibf_test.cpp.o -o build_ibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target build_ibf_test -[ 97%] Built target build_ibf_compressed_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/build_hibf_test.dir/link.d CMakeFiles/build_hibf_test.dir/build_hibf_test.cpp.o -o build_hibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target build_hibf_test -[ 97%] Built target search_hibf_preprocessing_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_hibf_test.dir/link.d CMakeFiles/search_hibf_test.dir/search_hibf_test.cpp.o -o search_hibf_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target search_hibf_test -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/search_ibf_preprocessing_test.dir/link.d CMakeFiles/search_ibf_preprocessing_test.dir/search_ibf_preprocessing_test.cpp.o -o search_ibf_preprocessing_test ../../lib/libraptor_argument_parsing.a ../../lib/libraptor_build.a ../../lib/libraptor_build_hibf.a ../../lib/libraptor_prepare.a ../../lib/libraptor_search.a ../../lib/libraptor_threshold.a ../../lib/libraptor_upgrade.a ../../lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread ../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 97%] Built target search_ibf_preprocessing_test -[ 98%] Linking CXX executable ../../../bin/chopper -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/chopper.dir/link.d CMakeFiles/chopper.dir/chopper.cpp.o -o ../../../bin/chopper ../../../lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[ 98%] Built target chopper -[100%] Linking CXX executable validate_shape -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api && /usr/bin/cmake -E cmake_link_script CMakeFiles/validate_shape.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 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/usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -lgtest_main -lgtest -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -[100%] Built target validate_shape -make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/CMakeFiles 0 -make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -#dh_auto_build --arch --builddirectory build_performance -#dh_auto_build --arch --builddirectory build_header -dh_auto_build --arch --builddirectory build_snippet - cd build_snippet && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 -make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -/usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet -B/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet --check-build-system CMakeFiles/Makefile.cmake 0 -/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet//CMakeFiles/progress.marks -make -f CMakeFiles/Makefile2 all -make[3]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/upgrade/CMakeFiles/raptor_upgrade.dir/build.make src/upgrade/CMakeFiles/raptor_upgrade.dir/depend -make -f _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/build.make _deps/raptor_chopper_project-build/CMakeFiles/xxhash_project.dir/depend -make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/depend -make 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src/upgrade/CMakeFiles/raptor_upgrade.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build.make src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/prepare/CMakeFiles/raptor_prepare.dir/build.make src/prepare/CMakeFiles/raptor_prepare.dir/build -make -f src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build.make src/build/hibf/CMakeFiles/raptor_build_hibf.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f 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unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/compute_bin_size.cpp -[ 11%] Building CXX object src/threshold/CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -MF CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o.d -o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing/upgrade_parsing.cpp -[ 15%] Building CXX object src/prepare/CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -[ 15%] Building CXX object src/argument_parsing/CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp -[ 54%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem 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-I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/insert_into_ibf.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem 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CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp -[ 55%] Building CXX object src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/search/CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -MF CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o.d -o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search/search_partitioned_ibf.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_parent_kmers.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/hibf/CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -MF CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o.d -o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 57%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -MF CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o.d -o CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/algorithm:62, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_header.cpp:13: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /usr/include/simde/x86/mmx.h:30, - from /usr/include/simde/x86/sse.h:33, - from /usr/include/simde/x86/avx.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/layout/hibf_statistics.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper_layout.cpp:9: -/usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] - 610 | # define SIMDE_POLY128_TYPE __int128 - | ^~~~~~~~ -/usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ - 616 | typedef SIMDE_POLY128_TYPE simde_poly128; - | ^~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/graph_extender.h:30, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:13: -/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/bits/stl_iterators.h:20:31: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] - 20 | : public T, public std::iterator { - | ^~~~~~~~ -In file included from /usr/include/c++/15/bits/stl_algobase.h:65, - from /usr/include/c++/15/vector:64, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/core.h:45, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/lemon/list_graph.h:26: -/usr/include/c++/15/bits/stl_iterator_base_types.h:129:34: note: declared here - 129 | struct _GLIBCXX17_DEPRECATED iterator - | ^~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/update_user_bins.hpp:15, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/update_user_bins.cpp:15: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/create_ibfs_from_chopper_pack.cpp:15: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 59%] Linking CXX static library ../../lib/libraptor_threshold.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -P CMakeFiles/raptor_threshold.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/threshold && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_threshold.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_threshold.a CMakeFiles/raptor_threshold.dir/multiple_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_error_model.cpp.o CMakeFiles/raptor_threshold.dir/one_indirect_error_model.cpp.o CMakeFiles/raptor_threshold.dir/pascal_row.cpp.o CMakeFiles/raptor_threshold.dir/precompute_correction.cpp.o CMakeFiles/raptor_threshold.dir/precompute_threshold.cpp.o -/usr/bin/ranlib ../../lib/libraptor_threshold.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 59%] Built target raptor_threshold -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/read_chopper_pack_file.hpp:17, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/read_chopper_pack_file.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/hierarchical_build.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/hierarchical_build.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/loop_over_children.cpp:17: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/create_ibfs_from_chopper_pack.hpp:16, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/chopper_build.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/construct_ibf.hpp:18, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/construct_ibf.cpp:16: -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 27 | alignas(std::hardware_destructive_interference_size) std::atomic ibf_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: its value can vary between compiler versions or with different ‘-mtune’ or ‘-mcpu’ flags -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: if this use is part of a public ABI, change it to instead use a constant variable you define -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: the default value for the current CPU tuning is 64 bytes -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:27:18: note: you can stabilize this value with ‘--param hardware_destructive_interference_size=64’, or disable this warning with ‘-Wno-interference-size’ -/build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf/build_data.hpp:28:18: warning: use of ‘std::hardware_destructive_interference_size’ [-Winterference-size] - 28 | alignas(std::hardware_destructive_interference_size) std::atomic user_bin_number{}; - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 61%] Linking CXX static library ../../lib/libraptor_prepare.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -P CMakeFiles/raptor_prepare.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/prepare && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_prepare.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_prepare.a CMakeFiles/raptor_prepare.dir/compute_minimiser.cpp.o -/usr/bin/ranlib ../../lib/libraptor_prepare.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 61%] Built target raptor_prepare -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/CMakeFiles/raptor_build.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/build/CMakeFiles/raptor_build.dir/build.make src/build/CMakeFiles/raptor_build.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 64%] Building CXX object src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -[ 64%] Building CXX object src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -[ 66%] Building CXX object src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/build_ibf.cpp.o -MF CMakeFiles/raptor_build.dir/build_ibf.cpp.o.d -o CMakeFiles/raptor_build.dir/build_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/build_ibf.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -MF CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o.d -o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/max_count_per_partition.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/build/CMakeFiles/raptor_build.dir/raptor_build.cpp.o -MF CMakeFiles/raptor_build.dir/raptor_build.cpp.o.d -o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/raptor_build.cpp -[ 67%] Linking CXX static library ../../../lib/libraptor_build_hibf.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -P CMakeFiles/raptor_build_hibf.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build/hibf && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build_hibf.dir/link.txt --verbose=1 -[ 69%] Linking CXX static library ../../../lib/libchopper_layout_lib.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -P CMakeFiles/chopper_layout_lib.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/chopper_layout_lib.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../../lib/libchopper_layout_lib.a CMakeFiles/chopper_layout_lib.dir/chopper_layout.cpp.o -/usr/bin/ranlib ../../../lib/libchopper_layout_lib.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 69%] Built target chopper_layout_lib -make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/depend -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout/CMakeFiles/raptor_layout.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/layout/CMakeFiles/raptor_layout.dir/build.make src/layout/CMakeFiles/raptor_layout.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build.make _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 72%] Building CXX object src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -[ 72%] Building CXX object _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/src && /usr/bin/c++ -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -std=gnu++23 -pedantic -Wall -Wextra -MD -MT _deps/raptor_chopper_project-build/src/CMakeFiles/chopper.dir/chopper.cpp.o -MF CMakeFiles/chopper.dir/chopper.cpp.o.d -o CMakeFiles/chopper.dir/chopper.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/c++ -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/layout/CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -MF CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o.d -o CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout/raptor_layout.cpp -/usr/bin/ar qc ../../../lib/libraptor_build_hibf.a CMakeFiles/raptor_build_hibf.dir/bin_size_in_bits.cpp.o CMakeFiles/raptor_build_hibf.dir/chopper_build.cpp.o CMakeFiles/raptor_build_hibf.dir/compute_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/construct_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/create_ibfs_from_chopper_pack.cpp.o CMakeFiles/raptor_build_hibf.dir/hierarchical_build.cpp.o CMakeFiles/raptor_build_hibf.dir/insert_into_ibf.cpp.o CMakeFiles/raptor_build_hibf.dir/loop_over_children.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_header.cpp.o CMakeFiles/raptor_build_hibf.dir/parse_chopper_pack_line.cpp.o CMakeFiles/raptor_build_hibf.dir/read_chopper_pack_file.cpp.o CMakeFiles/raptor_build_hibf.dir/update_parent_kmers.cpp.o CMakeFiles/raptor_build_hibf.dir/update_user_bins.cpp.o -/usr/bin/ranlib ../../../lib/libraptor_build_hibf.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 72%] Built target raptor_build_hibf -In file included from /usr/include/simde/x86/mmx.h:30, - from /usr/include/simde/x86/sse.h:33, - from /usr/include/simde/x86/avx.h:28, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/hyperloglog.hpp:21, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/sketch/toolbox.hpp:11, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include/chopper/data_store.hpp:8, - from /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/chopper.cpp:6: -/usr/include/simde/x86/../simde-common.h:610:30: warning: ISO C++ does not support ‘__int128’ for ‘simde_poly128’ [-Wpedantic] - 610 | # define SIMDE_POLY128_TYPE __int128 - | ^~~~~~~~ -/usr/include/simde/x86/../simde-common.h:616:9: note: in expansion of macro ‘SIMDE_POLY128_TYPE’ - 616 | typedef SIMDE_POLY128_TYPE simde_poly128; - | ^~~~~~~~~~~~~~~~~~ -[ 74%] Linking CXX static library ../../lib/libraptor_search.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -P CMakeFiles/raptor_search.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/search && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_search.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_search.a CMakeFiles/raptor_search.dir/raptor_search.cpp.o CMakeFiles/raptor_search.dir/search_hibf.cpp.o CMakeFiles/raptor_search.dir/search_ibf.cpp.o CMakeFiles/raptor_search.dir/search_partitioned_ibf.cpp.o -/usr/bin/ranlib ../../lib/libraptor_search.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 74%] Built target raptor_search -[ 76%] Linking CXX static library ../../lib/libraptor_build.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/cmake -P CMakeFiles/raptor_build.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/build && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_build.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_build.a CMakeFiles/raptor_build.dir/build_ibf.cpp.o CMakeFiles/raptor_build.dir/max_count_per_partition.cpp.o CMakeFiles/raptor_build.dir/raptor_build.cpp.o -/usr/bin/ranlib ../../lib/libraptor_build.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 76%] Built target raptor_build -[ 77%] Linking CXX static library ../../lib/libraptor_upgrade.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade && /usr/bin/cmake -P CMakeFiles/raptor_upgrade.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/upgrade && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_upgrade.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_upgrade.a CMakeFiles/raptor_upgrade.dir/raptor_upgrade.cpp.o -/usr/bin/ranlib ../../lib/libraptor_upgrade.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 77%] Built target raptor_upgrade -[ 79%] Linking CXX static library ../../lib/libraptor_argument_parsing.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/cmake -P CMakeFiles/raptor_argument_parsing.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/argument_parsing && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_argument_parsing.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_argument_parsing.a "CMakeFiles/raptor_argument_parsing.dir/build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf/parse_chopper_pack_line.cpp.o" CMakeFiles/raptor_argument_parsing.dir/build_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/compute_bin_size.cpp.o CMakeFiles/raptor_argument_parsing.dir/init_shared_meta.cpp.o CMakeFiles/raptor_argument_parsing.dir/parse_bin_path.cpp.o CMakeFiles/raptor_argument_parsing.dir/prepare_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/search_parsing.cpp.o CMakeFiles/raptor_argument_parsing.dir/upgrade_parsing.cpp.o -/usr/bin/ranlib ../../lib/libraptor_argument_parsing.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 79%] Built target raptor_argument_parsing -[ 81%] Linking CXX static library ../../lib/libraptor_layout.a -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/cmake -P CMakeFiles/raptor_layout.dir/cmake_clean_target.cmake -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/layout && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor_layout.dir/link.txt --verbose=1 -/usr/bin/ar qc ../../lib/libraptor_layout.a CMakeFiles/raptor_layout.dir/raptor_layout.cpp.o -/usr/bin/ranlib ../../lib/libraptor_layout.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 81%] Built target raptor_layout -make -f CMakeFiles/snippet_main.dir/build.make CMakeFiles/snippet_main.dir/depend -make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/snippet_main.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src/CMakeFiles/raptor.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f src/CMakeFiles/raptor.dir/build.make src/CMakeFiles/raptor.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f CMakeFiles/snippet_main.dir/build.make CMakeFiles/snippet_main.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 83%] Building CXX object src/CMakeFiles/raptor.dir/raptor.cpp.o -[ 84%] Building CXX object CMakeFiles/snippet_main.dir/snippet_main.cpp.o -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src && /usr/bin/c++ -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT src/CMakeFiles/raptor.dir/raptor.cpp.o -MF CMakeFiles/raptor.dir/raptor.cpp.o.d -o CMakeFiles/raptor.dir/raptor.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/src/raptor.cpp -/usr/bin/c++ 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/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/snippet_main.dir/snippet_main.cpp.o -MF CMakeFiles/snippet_main.dir/snippet_main.cpp.o.d -o CMakeFiles/snippet_main.dir/snippet_main.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp -[ 86%] Linking CXX static library libsnippet_main.a -/usr/bin/cmake -P CMakeFiles/snippet_main.dir/cmake_clean_target.cmake -/usr/bin/cmake -E cmake_link_script CMakeFiles/snippet_main.dir/link.txt --verbose=1 -/usr/bin/ar qc libsnippet_main.a CMakeFiles/snippet_main.dir/snippet_main.cpp.o -/usr/bin/ranlib libsnippet_main.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 86%] Built target snippet_main -make -f CMakeFiles/bin_indices_of_ibf_snippet.dir/build.make CMakeFiles/bin_indices_of_ibf_snippet.dir/depend -make -f CMakeFiles/filename_of_user_bin_snippet.dir/build.make CMakeFiles/filename_of_user_bin_snippet.dir/depend -make -f CMakeFiles/snippet_main_snippet.dir/build.make CMakeFiles/snippet_main_snippet.dir/depend -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/bin_indices_of_ibf_snippet.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/filename_of_user_bin_snippet.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles/snippet_main_snippet.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f CMakeFiles/bin_indices_of_ibf_snippet.dir/build.make CMakeFiles/bin_indices_of_ibf_snippet.dir/build -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f CMakeFiles/snippet_main_snippet.dir/build.make CMakeFiles/snippet_main_snippet.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make -f CMakeFiles/filename_of_user_bin_snippet.dir/build.make CMakeFiles/filename_of_user_bin_snippet.dir/build -make[4]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 89%] Building CXX object CMakeFiles/snippet_main_snippet.dir/snippet_main.cpp.o -[ 89%] Building CXX object CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -/usr/bin/c++ -DBINDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/bin/\" -DDATADIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/data/\" -DOUTPUTDIR=\"/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/output/\" -DRAPTOR_DATE=\"Unavailable\" -DRAPTOR_VERSION="\"3.0.1 (commit unavailable)\"" -DSEQAN3_HAS_BZIP2=1 -DSEQAN3_HAS_ZLIB=1 -DSHARG_HAS_BZIP2=1 -DSHARG_HAS_ZLIB=1 -I/build/reproducible-path/seqan-raptor-3.0.1+ds/test/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/src/../include -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/simde/simde -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/test/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/robin-hood-hashing/src/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -MF CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o.d -o CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -c /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.cpp -[ 91%] Building CXX object 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/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/chopper/include -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/lib/tool_description_lib/src -isystem /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/_deps/raptor_chopper_project-build/include -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -std=gnu++23 -pedantic -Wall -Wextra -Werror -Wno-interference-size -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -MD -MT CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -MF 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CMakeFiles/bin_indices_of_ibf_snippet.dir/link.txt --verbose=1 -[ 96%] Linking CXX executable hibf/filename_of_user_bin_snippet -/usr/bin/cmake -E cmake_link_script CMakeFiles/filename_of_user_bin_snippet.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/bin_indices_of_ibf_snippet.dir/link.d CMakeFiles/bin_indices_of_ibf_snippet.dir/hibf/bin_indices_of_ibf.cpp.o -o hibf/bin_indices_of_ibf_snippet libsnippet_main.a 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-I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects -Wl,--dependency-file=CMakeFiles/filename_of_user_bin_snippet.dir/link.d CMakeFiles/filename_of_user_bin_snippet.dir/hibf/filename_of_user_bin.cpp.o -o hibf/filename_of_user_bin_snippet libsnippet_main.a -lgtest_main -lgtest lib/libraptor_argument_parsing.a lib/libraptor_build.a lib/libraptor_build_hibf.a lib/libraptor_prepare.a lib/libraptor_search.a lib/libraptor_threshold.a lib/libraptor_upgrade.a lib/libraptor_layout.a /usr/lib/x86_64-linux-gnu/libxxhash.so -lpthread lib/libchopper_layout_lib.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so /usr/lib/x86_64-linux-gnu/librt.a /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libbz2.so -lrt /usr/lib/x86_64-linux-gnu/libyaml-cpp.so.0.8.0 /usr/lib/x86_64-linux-gnu/libxxhash.a -make[4]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[ 96%] Built target filename_of_user_bin_snippet -[ 98%] Linking CXX executable ../bin/raptor -cd /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/raptor.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/seqan-raptor-3.0.1+ds=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/seqan3/submodules/sdsl-lite/include/ -I/usr/include/simde -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/sharg-parser/include/ -I/build/reproducible-path/seqan-raptor-3.0.1+ds/lib/submodules/lemon/include/ -Wl,-z,relro -Wl,-z,now -fopenmp -fopenmp-simd -DSIMDE_ENABLE_OPENMP -Wno-psabi -mpopcnt -flto=auto -fno-fat-lto-objects 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Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -[100%] Built target chopper -make[3]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/CMakeFiles 0 -make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' debian/rules override_dh_auto_build-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_build --indep --builddirectory doc_build - cd doc_build && make -j40 INSTALL="install --strip-program=true" VERBOSE=1 + cd doc_build && make -j42 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation -B/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/CMakeFiles /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build//CMakeFiles/progress.marks @@ -3019,14 +1805,14 @@ Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf Searching for images... Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/04_search +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/03_index -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation Searching for dot files... Searching for msc files... @@ -3035,32 +1821,32 @@ Searching INPUT for files to process... Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/build/hibf -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/threshold +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/search Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/prepare Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/layout +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/include/raptor/argument_parsing Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/build/hibf -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/upgrade Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/threshold +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/search Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/prepare Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/layout +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/src/argument_parsing Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/04_search +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/01_introduction Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/03_index -Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/tutorial/02_layout Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/figures +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup +Searching for files in directory /build/reproducible-path/seqan-raptor-3.0.1+ds/doc/setup/quickstart_cmake Reading and parsing tag files Reading tag file '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/cppreference-doxygen-web.tag.xml', location 'https://en.cppreference.com/w/'... Parsing files @@ -3503,6 +2289,15 @@ Parsing code for file search_parsing.cpp... Parsing code for file upgrade_parsing.cpp... Parsing code for file build_ibf.cpp... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... +Parsing code for file CMakeLists.txt... Parsing code for file bin_size_in_bits.cpp... Parsing code for file chopper_build.cpp... Parsing code for file compute_kmers.cpp... @@ -3521,15 +2316,6 @@ Parsing code for file raptor_layout.cpp... Parsing code for file compute_minimiser.cpp... Parsing code for file raptor.cpp... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... -Parsing code for file CMakeLists.txt... Parsing code for file raptor_search.cpp... Parsing code for file search_hibf.cpp... Parsing code for file search_ibf.cpp... @@ -3789,1095 +2575,12 @@ make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/latex' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' - debian/rules override_dh_auto_test-arch -make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' -dh_auto_test --arch --builddirectory build_unit - cd build_unit && make -j40 test ARGS\+=--verbose ARGS\+=-j40 -make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 -UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/DartConfiguration.tcl -UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/DartConfiguration.tcl -Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit -Constructing a list of tests -Done constructing a list of tests -Updating test list for fixtures -Added 0 tests to meet fixture requirements -Checking test dependency graph... -Checking test dependency graph end -Connected to MAKE jobserver -test 1 - Start 1: api/issue_142 - -1: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/issue_142 -1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api -1: Test timeout computed to be: 10000000 -test 2 - Start 2: api/memory_usage - -2: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/memory_usage -2: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api -2: Test timeout computed to be: 10000000 -test 3 - Start 3: api/validate_shape - -3: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api/validate_shape -3: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/api -3: Test timeout computed to be: 10000000 -test 4 - Start 4: cli/argument_parsing/options_test - -4: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing/options_test -4: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/argument_parsing -4: Test timeout computed to be: 10000000 -test 5 - Start 5: cli/build/build_hibf_chopper_test - -5: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_hibf_chopper_test -5: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build -5: Test timeout computed to be: 10000000 -test 6 - Start 6: cli/build/build_hibf_test - -6: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_hibf_test -6: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build -6: Test timeout computed to be: 10000000 -test 7 - Start 7: cli/build/build_ibf_compressed_test - -7: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_ibf_compressed_test -7: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build -7: Test timeout computed to be: 10000000 -test 8 - Start 8: cli/build/build_ibf_partitioned_test - -8: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_ibf_partitioned_test -8: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build -8: Test timeout computed to be: 10000000 -test 9 - Start 9: cli/build/build_ibf_test - -9: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build/build_ibf_test -9: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/build -9: Test timeout computed to be: 10000000 -test 10 - Start 10: cli/search/search_hibf_test - -10: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_hibf_test -10: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search -10: Test timeout computed to be: 10000000 -test 11 - Start 11: cli/search/search_hibf_preprocessing_test - -11: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_hibf_preprocessing_test -11: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search -11: Test timeout computed to be: 10000000 -test 12 - Start 12: cli/search/search_ibf_preprocessing_test - -12: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_ibf_preprocessing_test -12: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search -12: Test timeout computed to be: 10000000 -test 13 - Start 13: cli/search/search_ibf_test - -13: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search/search_ibf_test -13: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/search -13: Test timeout computed to be: 10000000 -test 14 - Start 14: cli/upgrade/upgrade_test - -14: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade/upgrade_test -14: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit/cli/upgrade -14: Test timeout computed to be: 10000000 -1: Running main() from ./googletest/src/gtest_main.cc -1: [==========] Running 1 test from 1 test suite. -1: [----------] Global test environment set-up. -1: [----------] 1 test from issue -1: [ RUN ] issue.142 -1: [ OK ] issue.142 (4 ms) -1: [----------] 1 test from issue (4 ms total) -1: -1: [----------] Global test environment tear-down -1: [==========] 1 test from 1 test suite ran. (4 ms total) -1: [ PASSED ] 1 test. -2: Running main() from ./googletest/src/gtest_main.cc -2: [==========] Running 8 tests from 1 test suite. -2: [----------] Global test environment set-up. -2: [----------] 8 tests from peak_ram -2: [ RUN ] peak_ram.bytes -2: [ OK ] peak_ram.bytes (0 ms) -2: [ RUN ] peak_ram.KiB -2: [ OK ] peak_ram.KiB (0 ms) -2: [ RUN ] peak_ram.MiB -2: [ OK ] peak_ram.MiB (0 ms) -2: [ RUN ] peak_ram.GiB -2: [ OK ] peak_ram.GiB (0 ms) -2: [ RUN ] peak_ram.TiB -2: [ OK ] peak_ram.TiB (0 ms) -2: [ RUN ] peak_ram.PiB -2: [ OK ] peak_ram.PiB (0 ms) -2: [ RUN ] peak_ram.EiB -2: [ OK ] peak_ram.EiB (0 ms) -2: [ RUN ] peak_ram.via_OS -2: [ OK ] peak_ram.via_OS (0 ms) -2: [----------] 8 tests from peak_ram (0 ms total) -2: -2: [----------] Global test environment tear-down -2: [==========] 8 tests from 1 test suite ran. (0 ms total) -2: [ PASSED ] 8 tests. -3: Running main() from ./googletest/src/gtest_main.cc -3: [==========] Running 1 test from 1 test suite. -3: [----------] Global test environment set-up. -3: [----------] 1 test from validate_shape -3: [ RUN ] validate_shape.set_window_to_kmer -3: [ OK ] validate_shape.set_window_to_kmer (0 ms) -3: [----------] 1 test from validate_shape (0 ms total) -3: -3: [----------] Global test environment tear-down -3: [==========] 1 test from 1 test suite ran. (0 ms total) -3: [ PASSED ] 1 test. -4: Running main() from ./googletest/src/gtest_main.cc -4: [==========] Running 41 tests from 5 test suites. -4: [----------] Global test environment set-up. -4: [----------] 3 tests from argparse_main -4: [ RUN ] argparse_main.no_options -4: [ OK ] argparse_main.no_options (3 ms) -4: [ RUN ] argparse_main.no_subparser -4: [ OK ] argparse_main.no_subparser (3 ms) -4: [ RUN ] argparse_main.unknown_option -4: [ OK ] argparse_main.unknown_option (3 ms) -4: [----------] 3 tests from argparse_main (11 ms total) -4: -4: [----------] 20 tests from argparse_build -4: [ RUN ] argparse_build.no_options -5: Running main() from ./googletest/src/gtest_main.cc -5: [==========] Running 1 test from 1 test suite. -5: [----------] Global test environment set-up. -5: [----------] 1 test from build_hibf_layout -5: [ RUN ] build_hibf_layout.pipeline -6: Running main() from ./googletest/src/gtest_main.cc -6: [==========] Running 26 tests from 2 test suites. -6: [----------] Global test environment set-up. -6: [----------] 2 tests from build_hibf -6: [ RUN ] build_hibf.three_levels -7: Running main() from ./googletest/src/gtest_main.cc -7: [==========] Running 25 tests from 2 test suites. -7: [----------] Global test environment set-up. -7: [----------] 1 test from build_ibf_compressed -7: [ RUN ] build_ibf_compressed.wrong_compression -7: [ OK ] build_ibf_compressed.wrong_compression (0 ms) -7: [----------] 1 test from build_ibf_compressed (0 ms total) -7: -7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error -8: Running main() from ./googletest/src/gtest_main.cc -8: [==========] Running 25 tests from 2 test suites. -8: [----------] Global test environment set-up. -8: [----------] 1 test from build_ibf_partitioned -8: [ RUN ] build_ibf_partitioned.pipeline_misc -9: Running main() from ./googletest/src/gtest_main.cc -9: [==========] Running 25 tests from 2 test suites. -9: [----------] Global test environment set-up. -9: [----------] 1 test from build_ibf -9: [ RUN ] build_ibf.verbose -10: Running main() from ./googletest/src/gtest_main.cc -10: [==========] Running 37 tests from 2 test suites. -10: [----------] Global test environment set-up. -10: [----------] 1 test from search_hibf -10: [ RUN ] search_hibf.three_levels -11: Running main() from ./googletest/src/gtest_main.cc -11: [==========] Running 49 tests from 2 test suites. -11: [----------] Global test environment set-up. -11: [----------] 1 test from search_hibf_preprocessing -11: [ RUN ] search_hibf_preprocessing.pipeline_with_continuation -12: Running main() from ./googletest/src/gtest_main.cc -12: [==========] Running 49 tests from 2 test suites. -12: [----------] Global test environment set-up. -12: [----------] 1 test from search_ibf_preprocessing -12: [ RUN ] search_ibf_preprocessing.pipeline_compressed_index -13: Running main() from ./googletest/src/gtest_main.cc -13: [==========] Running 38 tests from 2 test suites. -13: [----------] Global test environment set-up. -13: [----------] 2 tests from search_ibf -13: [ RUN ] search_ibf.cache_thresholds - 1/14 Test #1: api/issue_142 ............................... Passed 0.02 sec - 2/14 Test #2: api/memory_usage ............................ Passed 0.02 sec - 3/14 Test #3: api/validate_shape .......................... Passed 0.02 sec -14: Running main() from ./googletest/src/gtest_main.cc -14: [==========] Running 6 tests from 1 test suite. -14: [----------] Global test environment set-up. -14: [----------] 6 tests from upgrade -14: [ RUN ] upgrade.via_fpr -4: [ OK ] argparse_build.no_options (4 ms) -4: [ RUN ] argparse_build.input_missing -10: [ OK ] search_hibf.three_levels (7 ms) -10: [----------] 1 test from search_hibf (7 ms total) -10: -10: [----------] 36 tests from search_hibf_suite/search_hibf -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error -14: [ OK ] upgrade.via_fpr (4 ms) -14: [ RUN ] upgrade.via_bin_path -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel0_error (14 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error -4: [ OK ] argparse_build.input_missing (4 ms) -4: [ RUN ] argparse_build.input_invalid -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error -4: [ OK ] argparse_build.input_invalid (4 ms) -4: [ RUN ] argparse_build.output_missing -12: [ OK ] search_ibf_preprocessing.pipeline_compressed_index (15 ms) -12: [----------] 1 test from search_ibf_preprocessing (15 ms total) -12: -12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error -4: [ OK ] argparse_build.output_missing (4 ms) -4: [ RUN ] argparse_build.kmer_window -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_19_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error -4: [ OK ] argparse_build.kmer_window (4 ms) -4: [ RUN ] argparse_build.kmer_shape -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_parallel1_error (14 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error -9: [ OK ] build_ibf.verbose (28 ms) -9: [----------] 1 test from build_ibf (28 ms total) -9: -9: [----------] 24 tests from build_ibf_suite/build_ibf -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel -14: [ OK ] upgrade.via_bin_path (17 ms) -14: [ RUN ] upgrade.via_bin_file -4: [ OK ] argparse_build.kmer_shape (3 ms) -4: [ RUN ] argparse_build.zero_threads -13: [ OK ] search_ibf.cache_thresholds (25 ms) -13: [ RUN ] search_ibf.verbose -4: [ OK ] argparse_build.zero_threads (3 ms) -4: [ RUN ] argparse_build.no_bins_in_file -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_parallel (7 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial -6: [ OK ] build_hibf.three_levels (40 ms) -6: [ RUN ] build_hibf.verbose -4: [ OK ] argparse_build.no_bins_in_file (3 ms) -4: [ RUN ] argparse_build.corrupted_input -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (18 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error -13: [ OK ] search_ibf.verbose (6 ms) -13: [----------] 2 tests from search_ibf (32 ms total) -13: -13: [----------] 36 tests from search_ibf_suite/search_ibf -13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial0_error (13 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error -14: [ OK ] upgrade.via_bin_file (11 ms) -14: [ RUN ] upgrade.compressed -4: [ OK ] argparse_build.corrupted_input (4 ms) -4: [ RUN ] argparse_build.empty_file_in_bin -8: [ OK ] build_ibf_partitioned.pipeline_misc (43 ms) -8: [----------] 1 test from build_ibf_partitioned (43 ms total) -8: -8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_19_window_serial (6 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_0_error (20 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error -14: [ OK ] upgrade.compressed (3 ms) -14: [ RUN ] upgrade.partitioned_ibf_via_fpr -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error -4: [ OK ] argparse_build.empty_file_in_bin (4 ms) -4: [ RUN ] argparse_build.mixed_input -11: [ OK ] search_hibf_preprocessing.pipeline_with_continuation (45 ms) -11: [----------] 1 test from search_hibf_preprocessing (45 ms total) -11: -11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error -4: [ OK ] argparse_build.mixed_input (3 ms) -4: [ RUN ] argparse_build.wrong_parts -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_19_window_1_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error -5: [ OK ] build_hibf_layout.pipeline (56 ms) -5: [----------] 1 test from build_hibf_layout (56 ms total) -5: -5: [----------] Global test environment tear-down -5: [==========] 1 test from 1 test suite ran. (56 ms total) -5: [ PASSED ] 1 test. -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_parallel (7 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial - 4/14 Test #5: cli/build/build_hibf_chopper_test ........... Passed 0.06 sec -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_19_window_serial1_error (13 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error -4: [ OK ] argparse_build.wrong_parts (4 ms) -4: [ RUN ] argparse_build.partitioned_parts -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (17 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error -14: [ OK ] upgrade.partitioned_ibf_via_fpr (11 ms) -14: [ RUN ] upgrade.partitioned_ibf_via_bin_path -4: [ OK ] argparse_build.partitioned_parts (3 ms) -4: [ RUN ] argparse_build.minimiser_and_shape -9: [ OK ] build_ibf_suite/build_ibf.with_file/1_bins_23_window_serial (7 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel -4: [ OK ] argparse_build.minimiser_and_shape (3 ms) -4: [ RUN ] argparse_build.minimiser_and_kmer -10: [ OK ] search_hibf_suite/search_hibf.with_error/1_bins_23_window_1_error (18 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel0_error (15 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error -4: [ OK ] argparse_build.minimiser_and_kmer (3 ms) -4: [ RUN ] argparse_build.minimiser_and_window -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_0_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error -4: [ OK ] argparse_build.minimiser_and_window (3 ms) -4: [ RUN ] argparse_build.layout_config_and_options -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial0_error (16 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_19_window_1_error (5 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel0_error (24 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error -6: [ OK ] build_hibf.verbose (41 ms) -6: [----------] 2 tests from build_hibf (81 ms total) -6: -6: [----------] 24 tests from build_hibf_suite/build_hibf -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_parallel1_error (14 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_parallel (21 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial -14: [ OK ] upgrade.partitioned_ibf_via_bin_path (24 ms) -14: [----------] 6 tests from upgrade (72 ms total) -14: -14: [----------] Global test environment tear-down -14: [==========] 6 tests from 1 test suite ran. (72 ms total) -14: [ PASSED ] 6 tests. - 5/14 Test #14: cli/upgrade/upgrade_test .................... Passed 0.08 sec -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_parallel (4 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial -4: [ OK ] argparse_build.layout_config_and_options (16 ms) -4: [ RUN ] argparse_build.layout_too_small_window -13: [ OK ] search_ibf_suite/search_ibf.with_error/1_bins_23_window_1_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_19_window_serial (5 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_19_window_serial1_error (15 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error -4: [ OK ] argparse_build.layout_too_small_window (4 ms) -4: [ RUN ] argparse_build.layout_config_missing -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_0_error (17 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_0_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_parallel (4 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial0_error (14 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error -4: [ OK ] argparse_build.layout_config_missing (4 ms) -4: [ RUN ] argparse_build.layout_config_missing_preprocessed -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_19_window_serial (14 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel -6: [ OK ] build_hibf_suite/build_hibf.with_file/1_bins_23_window_serial (5 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_19_window_1_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error -4: [ OK ] argparse_build.layout_config_missing_preprocessed (4 ms) -4: [----------] 20 tests from argparse_build (94 ms total) -4: -4: [----------] 13 tests from argparse_search -4: [ RUN ] argparse_search.no_options -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_parallel1_error (23 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error -4: [ OK ] argparse_search.no_options (3 ms) -4: [ RUN ] argparse_search.ibf_missing -4: [ OK ] argparse_search.ibf_missing (3 ms) -4: [ RUN ] argparse_search.ibf_wrong -10: [ OK ] search_hibf_suite/search_hibf.with_error/64_bins_23_window_1_error (17 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_19_window_serial1_error (16 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error -4: [ OK ] argparse_search.ibf_wrong (4 ms) -4: [ RUN ] argparse_search.query_missing -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_parallel (16 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial -4: [ OK ] argparse_search.query_missing (3 ms) -4: [ RUN ] argparse_search.query_wrong -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (27 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_0_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_parallel (21 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial -4: [ OK ] argparse_search.query_wrong (4 ms) -4: [ RUN ] argparse_search.output_missing -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partscompressed (78 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed -4: [ OK ] argparse_search.output_missing (3 ms) -4: [ RUN ] argparse_search.old_index -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_19_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_19_window_serial (10 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial0_error (25 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error -4: [ OK ] argparse_search.old_index (5 ms) -4: [ RUN ] argparse_search.ambiguous_index -4: [ OK ] argparse_search.ambiguous_index (3 ms) -4: [ RUN ] argparse_search.error_treshold -13: [ OK ] search_ibf_suite/search_ibf.with_error/64_bins_23_window_1_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error -4: [ OK ] argparse_search.error_treshold (3 ms) -4: [ RUN ] argparse_search.empty_query -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_parallel (10 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel0_error (26 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error -4: [ OK ] argparse_search.empty_query (3 ms) -4: [ RUN ] argparse_search.queries_too_short -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_0_error (18 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (27 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error -4: [ OK ] argparse_search.queries_too_short (4 ms) -4: [ RUN ] argparse_search.queries_have_variance -9: [ OK ] build_ibf_suite/build_ibf.with_file/64_bins_23_window_serial (27 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_19_window_1_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/1_bins_23_window_serial1_error (24 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/64_bins_23_window_serial (16 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_error/128_bins_23_window_1_error (18 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error -4: [ OK ] argparse_search.queries_have_variance (17 ms) -4: [ RUN ] argparse_search.queries_unsupported_length -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_parallel1_error (27 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_0_error (18 ms) -13: [ RUN ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_0_error (7 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error -4: [ OK ] argparse_search.queries_unsupported_length (6 ms) -4: [----------] 13 tests from argparse_search (69 ms total) -4: -4: [----------] 3 tests from argparse_upgrade -4: [ RUN ] argparse_upgrade.exclusive_options -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial0_error (27 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error -4: [ OK ] argparse_upgrade.exclusive_options (4 ms) -4: [ RUN ] argparse_upgrade.ambiguous_index -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_19_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_parallel (21 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_parallel (31 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial -4: [ OK ] argparse_upgrade.ambiguous_index (3 ms) -4: [ RUN ] argparse_upgrade.unsupported_index -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error -4: [ OK ] argparse_upgrade.unsupported_index (3 ms) -4: [----------] 3 tests from argparse_upgrade (12 ms total) -4: -4: [----------] 2 tests from argparse_prepare -4: [ RUN ] argparse_prepare.no_options -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel0_error (30 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error -13: [ OK ] search_ibf_suite/search_ibf.with_error/128_bins_23_window_1_error (18 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error -4: [ OK ] argparse_prepare.no_options (3 ms) -4: [ RUN ] argparse_prepare.cutoffs -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/1_bins_23_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error -4: [ OK ] argparse_prepare.cutoffs (3 ms) -4: [----------] 2 tests from argparse_prepare (7 ms total) -4: -4: [----------] Global test environment tear-down -4: [==========] 41 tests from 5 test suites ran. (194 ms total) -4: [ PASSED ] 41 tests. - 6/14 Test #4: cli/argument_parsing/options_test ........... Passed 0.20 sec -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial0_error (27 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_19_window_1_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_19_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/1_bins_23_window_serial1_error (28 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error2_partsuncompressed (78 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_0_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_19_window_serial (34 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.threshold/1_bins_23_window_1_error (7 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/64_bins_23_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_parallel1_error (34 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (20 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/1_bins_23_window_serial1_error (27 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_19_window_1_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_19_window_serial (48 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_19_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_0_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_parallel (19 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/64_bins_23_window_1_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.with_threshold/128_bins_23_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel0_error (19 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (22 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_0_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_19_window_1_error (7 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_file/128_bins_23_window_serial (20 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial0_error (35 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_19_window_1_error (6 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_parallel (29 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_parallel (4 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_19_window_serial (4 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.threshold/128_bins_23_window_1_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_parallel1_error (21 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial0_error (20 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_parallel (4 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_0_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/1_bins_23_window_serial (4 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_0_error (17 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_19_window_1_error (6 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial0_error (19 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_19_window_serial1_error (19 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_parallel (16 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_19_window_serial1_error (34 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/1_bins_23_window_1_error (17 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_0_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_0_error (5 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partscompressed (94 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_19_window_1_error (5 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_19_window_serial1_error (19 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_19_window_serial (16 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel -9: [ OK ] build_ibf_suite/build_ibf.with_file/128_bins_23_window_serial (48 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel -13: [ OK ] search_ibf_suite/search_ibf.no_hits/1_bins_23_window_1_error (16 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_parallel (6 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (29 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_0_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_19_window_serial (6 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_0_error (17 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_parallel (16 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_19_window_1_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_parallel (6 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel0_error (39 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/1_bins_23_window_serial (6 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel0_error (30 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/64_bins_23_window_serial (15 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.no_hits/64_bins_23_window_1_error (17 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_0_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_0_error (5 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (31 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_19_window_1_error (8 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_parallel (22 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial -13: [ OK ] search_ibf_suite/search_ibf.no_hits/64_bins_23_window_1_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_parallel (20 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_parallel1_error (32 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_0_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_parallel1_error (32 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_19_window_1_error (5 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_0_error (18 ms) -10: [ RUN ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial0_error (31 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_19_window_serial (27 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel -10: [ OK ] search_hibf_suite/search_hibf.no_hits/128_bins_23_window_1_error (17 ms) -10: [----------] 36 tests from search_hibf_suite/search_hibf (372 ms total) -10: -10: [----------] Global test environment tear-down -10: [==========] 37 tests from 2 test suites ran. (380 ms total) -10: [ PASSED ] 37 tests. - 7/14 Test #10: cli/search/search_hibf_test ................. Passed 0.38 sec -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_0_error (17 ms) -13: [ RUN ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error4_partsuncompressed (92 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_19_window_serial (34 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial0_error (29 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error -13: [ OK ] search_ibf_suite/search_ibf.no_hits/128_bins_23_window_1_error (17 ms) -13: [----------] 36 tests from search_ibf_suite/search_ibf (362 ms total) -13: -13: [----------] Global test environment tear-down -13: [==========] 38 tests from 2 test suites ran. (394 ms total) -13: [ PASSED ] 38 tests. - 8/14 Test #13: cli/search/search_ibf_test .................. Passed 0.40 sec -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial0_error (44 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/64_bins_23_window_serial1_error (30 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_parallel (17 ms) -6: [ RUN ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_parallel (27 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/64_bins_23_window_serial1_error (29 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (24 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/64_bins_23_window_serial (27 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel -6: [ OK ] build_hibf_suite/build_hibf.with_shape/128_bins_23_window_serial (30 ms) -6: [----------] 24 tests from build_hibf_suite/build_hibf (358 ms total) -6: -6: [----------] Global test environment tear-down -6: [==========] 26 tests from 2 test suites ran. (440 ms total) -6: [ PASSED ] 26 tests. - 9/14 Test #6: cli/build/build_hibf_test ................... Passed 0.44 sec -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/64_bins_23_window_serial1_error (45 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel0_error (27 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (22 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_parallel (28 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial0_error (23 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_parallel1_error (26 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel0_error (37 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_19_window_serial1_error (25 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial0_error (30 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_19_window_serial (49 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_parallel1_error (37 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (34 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_19_window_serial1_error (29 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_parallel (28 ms) -9: [ RUN ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (34 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel0_error (34 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partscompressed (188 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial0_error (56 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error -9: [ OK ] build_ibf_suite/build_ibf.with_shape/128_bins_23_window_serial (49 ms) -9: [----------] 24 tests from build_ibf_suite/build_ibf (560 ms total) -9: -9: [----------] Global test environment tear-down -9: [==========] 25 tests from 2 test suites ran. (589 ms total) -9: [ PASSED ] 25 tests. -10/14 Test #9: cli/build/build_ibf_test .................... Passed 0.59 sec -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial0_error (32 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_parallel1_error (34 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_19_window_serial1_error (42 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline/128_bins_23_window_serial1_error (32 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial0_error (32 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel0_error (17 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel0_error (44 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_parallel1_error (16 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline/128_bins_23_window_serial1_error (34 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial0_error (17 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel0_error (15 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_19_window_serial1_error (16 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_parallel1_error (14 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_parallel1_error (46 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial0_error (14 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel0_error (28 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_19_window_serial1_error (14 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_0_error8_partsuncompressed (169 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel0_error (25 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_parallel1_error (31 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial0_error (52 ms) -7: [ RUN ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_parallel1_error (25 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial0_error (28 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partscompressed (52 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial0_error (26 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error -7: [ OK ] build_ibf_compressed_suite/build_ibf_compressed.pipeline/128_bins_23_window_serial1_error (52 ms) -7: [----------] 24 tests from build_ibf_compressed_suite/build_ibf_compressed (820 ms total) -7: -7: [----------] Global test environment tear-down -7: [==========] 25 tests from 2 test suites ran. (820 ms total) -7: [ PASSED ] 25 tests. -11/14 Test #7: cli/build/build_ibf_compressed_test ......... Passed 0.82 sec -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/1_bins_23_window_serial1_error (28 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/1_bins_23_window_serial1_error (24 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel0_error (25 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel0_error (19 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_parallel1_error (26 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error2_partsuncompressed (74 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_parallel1_error (19 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial0_error (21 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial0_error (25 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_19_window_serial1_error (18 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_19_window_serial1_error (29 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel0_error (28 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel0_error (35 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_parallel1_error (28 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partscompressed (118 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_parallel1_error (37 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial0_error (31 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/64_bins_23_window_serial1_error (28 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial0_error (36 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel0_error (28 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/64_bins_23_window_serial1_error (35 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_parallel1_error (29 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error4_partsuncompressed (102 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel0_error (29 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial0_error (35 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_parallel1_error (32 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_19_window_serial1_error (34 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial0_error (33 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel0_error (34 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_19_window_serial1_error (31 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_parallel1_error (33 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel0_error (39 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partscompressed (159 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial0_error (34 ms) -11: [ RUN ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_parallel1_error (39 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error -11: [ OK ] search_hibf_preprocessing_suite/search_hibf_preprocessing.pipeline_compressed_index/128_bins_23_window_serial1_error (36 ms) -11: [----------] 48 tests from search_hibf_preprocessing_suite/search_hibf_preprocessing (1249 ms total) -11: -11: [----------] Global test environment tear-down -11: [==========] 49 tests from 2 test suites ran. (1295 ms total) -11: [ PASSED ] 49 tests. -12/14 Test #11: cli/search/search_hibf_preprocessing_test ... Passed 1.30 sec -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial0_error (40 ms) -12: [ RUN ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error -12: [ OK ] search_ibf_preprocessing_suite/search_ibf_preprocessing.pipeline_compressed_bins/128_bins_23_window_serial1_error (38 ms) -12: [----------] 48 tests from search_ibf_preprocessing_suite/search_ibf_preprocessing (1337 ms total) -12: -12: [----------] Global test environment tear-down -12: [==========] 49 tests from 2 test suites ran. (1352 ms total) -12: [ PASSED ] 49 tests. -13/14 Test #12: cli/search/search_ibf_preprocessing_test .... Passed 1.36 sec -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_19_window_1_error8_partsuncompressed (147 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partscompressed (57 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error2_partsuncompressed (47 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partscompressed (96 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error4_partsuncompressed (85 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partscompressed (202 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_0_error8_partsuncompressed (201 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partscompressed (82 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error2_partsuncompressed (71 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partscompressed (121 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error4_partsuncompressed (125 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partscompressed (189 ms) -8: [ RUN ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed -8: [ OK ] build_ibf_partitioned_suite/build_ibf_partitioned.pipeline/128_bins_23_window_1_error8_partsuncompressed (189 ms) -8: [----------] 24 tests from build_ibf_partitioned_suite/build_ibf_partitioned (2829 ms total) -8: -8: [----------] Global test environment tear-down -8: [==========] 25 tests from 2 test suites ran. (2872 ms total) -8: [ PASSED ] 25 tests. -14/14 Test #8: cli/build/build_ibf_partitioned_test ........ Passed 2.88 sec - -100% tests passed, 0 tests failed out of 14 - -Total Test time (real) = 2.89 sec -make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_unit' -#dh_auto_test --arch --builddirectory build_performance -#dh_auto_test --arch --builddirectory build_header -dh_auto_test --arch --builddirectory build_snippet - cd build_snippet && make -j40 test ARGS\+=--verbose ARGS\+=-j40 -make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 -UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/DartConfiguration.tcl -UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/DartConfiguration.tcl -Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -Constructing a list of tests -Done constructing a list of tests -Updating test list for fixtures -Added 0 tests to meet fixture requirements -Checking test dependency graph... -Checking test dependency graph end -Connected to MAKE jobserver -test 1 - Start 1: snippet/hibf/bin_indices_of_ibf_snippet - -1: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet -1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -1: Environment variables: -1: SHARG_NO_VERSION_CHECK=0 -1: Test timeout computed to be: 10000000 -test 2 - Start 2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output - -2: Test command: /usr/bin/cmake "-DTARGET_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet" "-DSOURCE_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.cpp" "-P" "/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/compare_snippet_output.cmake" -2: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -2: Environment variables: -2: SHARG_NO_VERSION_CHECK=0 -2: Test timeout computed to be: 10000000 -test 3 - Start 3: snippet/hibf/filename_of_user_bin_snippet - -3: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet -3: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -3: Environment variables: -3: SHARG_NO_VERSION_CHECK=0 -3: Test timeout computed to be: 10000000 -test 4 - Start 4: snippet/hibf/filename_of_user_bin_snippet_cmp_output - -4: Test command: /usr/bin/cmake "-DTARGET_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet" "-DSOURCE_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp" "-P" "/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/compare_snippet_output.cmake" -4: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -4: Environment variables: -4: SHARG_NO_VERSION_CHECK=0 -4: Test timeout computed to be: 10000000 -test 5 - Start 5: snippet/snippet_main_snippet - -5: Test command: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet -5: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -5: Environment variables: -5: SHARG_NO_VERSION_CHECK=0 -5: Test timeout computed to be: 10000000 -test 6 - Start 6: snippet/snippet_main_snippet_cmp_output - -6: Test command: /usr/bin/cmake "-DTARGET_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet" "-DSOURCE_FILE=/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp" "-P" "/build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/compare_snippet_output.cmake" -6: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet -6: Environment variables: -6: SHARG_NO_VERSION_CHECK=0 -6: Test timeout computed to be: 10000000 -1: User bin indices of 1-level-IBF: [1,2,3] -1: User bin indices of 2-level-IBF: [2,3] -3: Filename of user bin 0: path/example1.fasta -3: Filename of user bin 1: path/example2.fasta -3: Filename of user bin 2: path/example2.fasta -1/6 Test #1: snippet/hibf/bin_indices_of_ibf_snippet ................ Passed 0.01 sec -2/6 Test #3: snippet/hibf/filename_of_user_bin_snippet .............. Passed 0.01 sec -3/6 Test #5: snippet/snippet_main_snippet ........................... Passed 0.00 sec -2: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet -2: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.cpp -2: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet.out -2: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out -2: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/bin_indices_of_ibf_snippet.err -2: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.err -4: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet -4: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.cpp -4: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet.out -4: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.out -4: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/hibf/filename_of_user_bin_snippet.err -4: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.err -2: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/bin_indices_of_ibf.out -4: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/hibf/filename_of_user_bin.out -6: -- TARGET_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet -6: -- SOURCE_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.cpp -6: -- ACTUAL_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet.out -6: -- EXPECTED_OUTPUT_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.out -6: -- ACTUAL_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet/snippet_main_snippet.err -6: -- EXPECTED_ERROR_FILE: /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.err -6: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.out -6: -- Output matches /build/reproducible-path/seqan-raptor-3.0.1+ds/test/snippet/snippet_main.err -4/6 Test #6: snippet/snippet_main_snippet_cmp_output ................ Passed 0.01 sec -5/6 Test #2: snippet/hibf/bin_indices_of_ibf_snippet_cmp_output ..... Passed 0.03 sec -6/6 Test #4: snippet/hibf/filename_of_user_bin_snippet_cmp_output ... Passed 0.02 sec - -100% tests passed, 0 tests failed out of 6 - -Total Test time (real) = 0.03 sec -make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/build_snippet' -make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' - debian/rules override_dh_auto_test-indep -make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' -dh_auto_test --builddirectory doc_build - cd doc_build && make -j40 test ARGS\+=--verbose ARGS\+=-j40 -make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' -Running tests... -/usr/bin/ctest --force-new-ctest-process --verbose -j40 -UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DartConfiguration.tcl -UpdateCTestConfiguration from :/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build/DartConfiguration.tcl -Test project /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build -Constructing a list of tests -Done constructing a list of tests -Updating test list for fixtures -Added 0 tests to meet fixture requirements -Checking test dependency graph... -Checking test dependency graph end -Connected to MAKE jobserver -test 1 - Start 1: doc_no_warnings_test - -1: Test command: /usr/bin/bash "-c" " - /usr/bin/doxygen > doxygen.cout 2> doxygen.cerr; - cat "doxygen.cerr"; - test ! -s "doxygen.cerr"" -1: Working Directory: /build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build -1: Test timeout computed to be: 10000000 -1/1 Test #1: doc_no_warnings_test ............. Passed 0.78 sec - -100% tests passed, 0 tests failed out of 1 - -Total Test time (real) = 0.78 sec -make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' -make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_install --indep --builddir doc_build - cd doc_build && make -j40 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd doc_build && make -j42 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds/test/documentation -B/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4890,7 +2593,7 @@ make[2]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/doc_build' make[1]: Leaving directory '/build/reproducible-path/seqan-raptor-3.0.1+ds' dh_auto_install -Nseqan-raptor-doc - cd obj-x86_64-linux-gnu && make -j40 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/seqan-raptor-3.0.1\+ds/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/seqan-raptor-3.0.1+ds -B/build/reproducible-path/seqan-raptor-3.0.1+ds/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -4923,8 +2626,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_3.0.1+ds-10_amd64.deb'. dpkg-deb: building package 'seqan-raptor' in '../seqan-raptor_3.0.1+ds-10_amd64.deb'. +dpkg-deb: building package 'seqan-raptor-dbgsym' in '../seqan-raptor-dbgsym_3.0.1+ds-10_amd64.deb'. dpkg-deb: building package 'seqan-raptor-doc' in '../seqan-raptor-doc_3.0.1+ds-10_all.deb'. dpkg-genbuildinfo --build=binary -O../seqan-raptor_3.0.1+ds-10_amd64.buildinfo dpkg-genchanges --build=binary -O../seqan-raptor_3.0.1+ds-10_amd64.changes @@ -4933,12 +2636,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4052193/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/538171 and its subdirectories -I: Current time: Sun Nov 2 02:24:28 -12 2025 -I: pbuilder-time-stamp: 1762093468 +I: removing directory /srv/workspace/pbuilder/4052193 and its subdirectories +I: Current time: Sun Dec 6 10:59:05 +14 2026 +I: pbuilder-time-stamp: 1796504345