Diff of the two buildlogs: -- --- b1/build.log 2025-11-05 05:18:00.919036882 +0000 +++ b2/build.log 2025-11-05 05:19:56.191180996 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Dec 7 23:38:05 -12 2026 -I: pbuilder-time-stamp: 1796729885 +I: Current time: Wed Nov 5 19:18:02 +14 2025 +I: pbuilder-time-stamp: 1762319882 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking svim_2.0.0-5.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3873680/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 5 05:18 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1e1a4bbeb7664bddac98a261bd701579' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3873680' - PS1='# ' - PS2='> ' + INVOCATION_ID=e800fc963ab9418aba037321279a8f45 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=124000 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.s6ESvwyb/pbuilderrc_fE74 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.s6ESvwyb/b1 --logfile b1/build.log svim_2.0.0-5.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.s6ESvwyb/pbuilderrc_gwb8 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.s6ESvwyb/b2 --logfile b2/build.log svim_2.0.0-5.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3873680/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -290,7 +322,7 @@ Get: 165 http://deb.debian.org/debian forky/main amd64 python3-matplotlib amd64 3.10.7+dfsg1-1 [22.6 MB] Get: 166 http://deb.debian.org/debian forky/main amd64 python3-pysam amd64 0.23.0+ds-1+b1 [3665 kB] Get: 167 http://deb.debian.org/debian forky/main amd64 python3-pyspoa amd64 0.2.1-2+b1 [65.3 kB] -Fetched 119 MB in 2s (69.7 MB/s) +Fetched 119 MB in 5s (22.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19862 files and directories currently installed.) @@ -845,8 +877,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Dec 8 11:39:46 UTC 2026. -Universal Time is now: Tue Dec 8 11:39:46 UTC 2026. +Local time is now: Wed Nov 5 05:19:18 UTC 2025. +Universal Time is now: Wed Nov 5 05:19:18 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (16.0.0-1) ... @@ -996,7 +1028,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/svim-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../svim_2.0.0-5_source.changes +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/svim-2.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../svim_2.0.0-5_source.changes dpkg-buildpackage: info: source package svim dpkg-buildpackage: info: source version 2.0.0-5 dpkg-buildpackage: info: source distribution unstable @@ -1064,70 +1100,35 @@ running build running build_py creating /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_merging.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_genotyping.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_CLUSTER.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVSignature.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_input_parsing.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_plot.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim copying src/svim/SVIM_alignment.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVCandidate.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_clustering.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/__init__.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim copying src/svim/SVIM_inter.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim copying src/svim/SVIM_COMBINE.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_intra.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_plot.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim -copying src/svim/SVIM_input_parsing.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_CLUSTER.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_clustering.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim copying src/svim/SVIM_COLLECT.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_intra.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVCandidate.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/__init__.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_genotyping.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVIM_merging.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim +copying src/svim/SVSignature.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim creating /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests -copying src/tests/test_satag.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests copying src/tests/test_consensus.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests -copying src/tests/test_inter.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests +copying src/tests/test_Signature.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests copying src/tests/test_clustering.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests +copying src/tests/test_input_parsing.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests copying src/tests/test_SVCandidate.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests +copying src/tests/test_Collect.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests +copying src/tests/test_satag.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests copying src/tests/test_intra.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests +copying src/tests/test_inter.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests copying src/tests/__init__.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests -copying src/tests/test_input_parsing.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests -copying src/tests/test_Signature.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests -copying src/tests/test_Collect.py -> /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests running build_scripts creating build/scripts-3.13 copying and adjusting src/svim/svim -> build/scripts-3.13 changing mode of build/scripts-3.13/svim from 644 to 755 - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/svim-2.0.0' -dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m unittest discover -v src/tests" -I: pybuild base:311: PYTHONPATH=/build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build python3.13 -m unittest discover -v src/tests -test_analyze_alignment_file_querysorted (test_Collect.TestCollect.test_analyze_alignment_file_querysorted) ... ok -test_bam_iterator (test_Collect.TestCollect.test_bam_iterator) ... ok -test_retrieve_primary_alignment_from_supplementary (test_Collect.TestCollect.test_retrieve_primary_alignment_from_supplementary) ... ok -test_retrieve_supplementary_alignment_from_primary (test_Collect.TestCollect.test_retrieve_supplementary_alignment_from_primary) ... ok -test_downstream_distance_to (test_SVCandidate.DeletionCandidateTestCase.test_downstream_distance_to) ... ok -test_get_key (test_SVCandidate.DeletionCandidateTestCase.test_get_key) ... ok -test_get_source (test_SVCandidate.DeletionCandidateTestCase.test_get_source) ... ok -test_get_std_pos (test_SVCandidate.DeletionCandidateTestCase.test_get_std_pos) ... ok -test_get_std_span (test_SVCandidate.DeletionCandidateTestCase.test_get_std_span) ... ok -test_get_vcf_entry (test_SVCandidate.DeletionCandidateTestCase.test_get_vcf_entry) ... ok -test_accessors (test_Signature.TestSVSignature.test_accessors) ... ok -test_as_string (test_Signature.TestSVSignature.test_as_string) ... ok -test_downstream_distance_to (test_Signature.TestSVSignature.test_downstream_distance_to) ... ok -test_clustering (test_clustering.TestSVIMClustering.test_clustering) ... ok -test_partitioning (test_clustering.TestSVIMClustering.test_partitioning) ... ok -test_partitioning_large_distance (test_clustering.TestSVIMClustering.test_partitioning_large_distance) ... ok -test_scores (test_clustering.TestSVIMClustering.test_scores) ... ok -test_simple (test_consensus.TestSVIMConsensus.test_simple) ... ok -test_skipping (test_consensus.TestSVIMConsensus.test_skipping) ... ok -test_guess_file_type (test_input_parsing.TestInputParsing.test_guess_file_type) ... ok -test_is_similar (test_inter.TestSVIMInter.test_is_similar) ... ok -test_analyze_cigar_indel (test_intra.TestSVIMIntra.test_analyze_cigar_indel) ... ok -test_fetch (test_satag.TestSAExtraction.test_fetch) ... ok -test_satag_extraction_complete (test_satag.TestSAExtraction.test_satag_extraction_complete) ... ok -test_satag_length (test_satag.TestSAExtraction.test_satag_length) ... ok - ----------------------------------------------------------------------- -Ran 25 tests in 0.621s - -OK -make[1]: Leaving directory '/build/reproducible-path/svim-2.0.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -1166,66 +1167,55 @@ running install_lib creating /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages creating /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_merging.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_genotyping.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_CLUSTER.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVSignature.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_input_parsing.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_plot.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_alignment.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVCandidate.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_clustering.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__init__.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_inter.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_COMBINE.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_intra.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_plot.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_input_parsing.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim -creating /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVCandidate.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_clustering.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVSignature.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_input_parsing.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_merging.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_COLLECT.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_intra.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_COMBINE.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__pycache__/SVIM_inter.cpython-313.pyc -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__pycache__ +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_CLUSTER.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_clustering.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_COLLECT.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_intra.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVCandidate.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/__init__.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_genotyping.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVIM_merging.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/svim/SVSignature.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim creating /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_satag.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_consensus.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_inter.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_Signature.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_clustering.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_input_parsing.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_SVCandidate.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_Collect.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_satag.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_intra.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests +copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_inter.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/__init__.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_input_parsing.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_Signature.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests -copying /build/reproducible-path/svim-2.0.0/.pybuild/cpython3_3.13/build/tests/test_Collect.py -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_merging.py to SVIM_merging.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_genotyping.py to SVIM_genotyping.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_CLUSTER.py to SVIM_CLUSTER.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVSignature.py to SVSignature.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_input_parsing.py to SVIM_input_parsing.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_plot.py to SVIM_plot.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_alignment.py to SVIM_alignment.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVCandidate.py to SVCandidate.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_clustering.py to SVIM_clustering.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_inter.py to SVIM_inter.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_COMBINE.py to SVIM_COMBINE.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_intra.py to SVIM_intra.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_plot.py to SVIM_plot.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_input_parsing.py to SVIM_input_parsing.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_CLUSTER.py to SVIM_CLUSTER.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_clustering.py to SVIM_clustering.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_COLLECT.py to SVIM_COLLECT.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_satag.py to test_satag.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_intra.py to SVIM_intra.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVCandidate.py to SVCandidate.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/__init__.py to __init__.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_genotyping.py to SVIM_genotyping.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVIM_merging.py to SVIM_merging.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/svim/SVSignature.py to SVSignature.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_consensus.py to test_consensus.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_inter.py to test_inter.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_Signature.py to test_Signature.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_clustering.py to test_clustering.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_input_parsing.py to test_input_parsing.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_SVCandidate.py to test_SVCandidate.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_Collect.py to test_Collect.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_satag.py to test_satag.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_intra.py to test_intra.cpython-313.pyc +byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_inter.py to test_inter.cpython-313.pyc byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/__init__.py to __init__.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_input_parsing.py to test_input_parsing.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_Signature.py to test_Signature.cpython-313.pyc -byte-compiling /build/reproducible-path/svim-2.0.0/debian/svim/usr/lib/python3.13/dist-packages/tests/test_Collect.py to test_Collect.cpython-313.pyc running install_data copying LICENSE -> /build/reproducible-path/svim-2.0.0/debian/svim/usr/. running install_egg_info @@ -1275,12 +1265,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/124000/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3873680 and its subdirectories -I: Current time: Mon Dec 7 23:41:00 -12 2026 -I: pbuilder-time-stamp: 1796730060 +I: removing directory /srv/workspace/pbuilder/124000 and its subdirectories +I: Current time: Wed Nov 5 19:19:55 +14 2025 +I: pbuilder-time-stamp: 1762319995