Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 11:12:39.359460468 +0000 +++ b2/build.log 2025-10-31 11:18:07.059830186 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Oct 30 23:05:37 -12 2025 -I: pbuilder-time-stamp: 1761908737 +I: Current time: Fri Dec 4 07:35:41 +14 2026 +I: pbuilder-time-stamp: 1796319341 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying robin_map.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D01_modify_environment starting +debug: Running on infom02-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 3 17:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='9b3004d0ad96408ea16c93647243eded' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1287835' - PS1='# ' - PS2='> ' + INVOCATION_ID=a0c3f76439d54522b03bcbd747182a3b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1538089 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_WMAk --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b1 --logfile b1/build.log veryfasttree_4.0.5+dfsg-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/pbuilderrc_YqhV --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.3bJtN0o9/b2 --logfile b2/build.log veryfasttree_4.0.5+dfsg-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom01-amd64 6.12.48+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.48-1 (2025-09-20) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1287835/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -187,7 +219,7 @@ Get: 68 http://deb.debian.org/debian forky/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get: 69 http://deb.debian.org/debian forky/main amd64 robin-map-dev all 1.4.0-2 [29.6 kB] Get: 70 http://deb.debian.org/debian forky/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 48.9 MB in 2s (27.2 MB/s) +Fetched 48.9 MB in 1s (78.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19869 files and directories currently installed.) @@ -488,7 +520,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1538089/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/veryfasttree-4.0.5+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../veryfasttree_4.0.5+dfsg-2_source.changes dpkg-buildpackage: info: source package veryfasttree dpkg-buildpackage: info: source version 4.0.5+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -530,7 +566,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.9s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -561,7 +597,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.5s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -592,8 +628,8 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.9s) --- Generating done (0.2s) +-- Configuring done (1.1s) +-- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -623,7 +659,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.7s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -654,7 +690,7 @@ -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.6s) +-- Configuring done (1.1s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -676,7 +712,7 @@ dh_auto_build --builddirectory build_${SIMD} && \ mv build_${SIMD}/VeryFastTree build_${SIMD}/VeryFastTree-${SIMD} ; \ done - cd build_avx512f && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx512f && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f//CMakeFiles/progress.marks @@ -688,30 +724,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o +[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o +[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f 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-I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatCuda.cpp -[ 62%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o -[ 68%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatSSE128.cpp.o +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Knuth.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT 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-fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -729,12 +771,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx512f -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -745,22 +781,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -803,22 +839,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -832,22 +868,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -861,22 +897,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -890,22 +926,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -919,22 +955,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -948,22 +984,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX512.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX512Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -975,7 +1011,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx512f' - cd build_avx2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx2 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/DiskMemory.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -1028,12 +1070,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx2 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1073,22 +1109,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1102,22 +1138,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1131,22 +1167,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1189,22 +1225,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1216,7 +1252,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx2' - cd build_avx && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_avx && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx//CMakeFiles/progress.marks @@ -1228,30 +1264,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' +[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o [ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 43%] Building CXX object 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-Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp: In function 'void ran_array(long int*, int)': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:45:18: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 45 | register int i,j; @@ -1269,12 +1311,6 @@ /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Knuth.cpp:72:19: warning: ISO C++17 does not allow 'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -[ 87%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -mavx -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1285,22 +1321,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1372,22 +1408,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1401,22 +1437,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1430,22 +1466,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatAVX256.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::AVX256Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1457,7 +1493,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_avx' - cd build_sse4_1 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_sse4_1 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1//CMakeFiles/progress.marks @@ -1469,30 +1505,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' +[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp -[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include 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'register' storage class specifier [-Wregister] 72 | register long ss=(seed+2)&(MM-2); | ^~ -[ 81%] Building CXX object CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/VeryFastTree.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/VeryFastTree.cpp -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -[ 93%] Building CXX object CMakeFiles/VeryFastTree.dir/main.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/Alignment.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/Alignment.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -msse4.1 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/main.cpp.o -MF CMakeFiles/VeryFastTree.dir/main.cpp.o.d -o CMakeFiles/VeryFastTree.dir/main.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/main.cpp In file included from /usr/include/x86_64-linux-gnu/c++/15/bits/c++allocator.h:33, from /usr/include/c++/15/bits/allocator.h:46, from /usr/include/c++/15/string:45, @@ -1526,22 +1562,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1555,22 +1591,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1584,22 +1620,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:1: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:1: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloat.cpp:3: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::BasicOperations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp:3: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::BasicOperations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1613,22 +1649,22 @@ from /usr/include/c++/15/ostream:42, from /usr/include/c++/15/iostream:43, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../Utils.h:6, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:2: + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:2: In member function 'void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = std::_List_node]', inlined from 'static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = std::_List_node]' at /usr/include/c++/15/bits/alloc_traits.h:649:23, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_put_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:820:32, inlined from 'void std::__cxx11::_List_base<_Tp, _Alloc>::_M_destroy_node(_Node_ptr) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:855:19, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::_M_erase(iterator) [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:2486:23, inlined from 'void std::__cxx11::list<_Tp, _Allocator>::pop_front() [with _Tp = double; _Alloc = std::allocator]' at /usr/include/c++/15/bits/stl_list.h:1789:16, - inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, - inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: + inlined from 'veryfasttree::NeighbourJoining::treePartitioning(int)::' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5660:31, + inlined from 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]' at /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5674:17: /usr/include/c++/15/bits/new_allocator.h:172:66: warning: 'void operator delete(void*, std::size_t)' called on unallocated object 'tendency' [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In file included from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.h:846, from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../VeyFastTreeImpl.h:15, - from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeFloatSSE128.cpp:4: -/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = float; Operations = veryfasttree::SSE128Operations]': + from /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleSSE128.cpp:4: +/build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc: In member function 'std::vector veryfasttree::NeighbourJoining::treePartitioning(int) [with Precision = double; Operations = veryfasttree::SSE128Operations]': /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/../NeighbourJoining.tcc:5626:23: note: declared here 5626 | std::list tendency; | ^~~~~~~~ @@ -1640,7 +1676,7 @@ make[3]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse4_1' - cd build_sse2 && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 + cd build_sse2 && make -j16 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' /usr/bin/cmake -S/build/reproducible-path/veryfasttree-4.0.5+dfsg -B/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2/CMakeFiles /build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2//CMakeFiles/progress.marks @@ -1652,32 +1688,36 @@ make[4]: Leaving directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' make -f CMakeFiles/VeryFastTree.dir/build.make CMakeFiles/VeryFastTree.dir/build make[4]: Entering directory '/build/reproducible-path/veryfasttree-4.0.5+dfsg/build_sse2' -[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -[ 12%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -[ 18%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX256.cpp -[ 25%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o +[ 6%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX256.cpp.o [ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleSSE128.cpp.o -[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDouble.cpp -/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleAVX512.cpp +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloat.cpp.o +[ 31%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleAVX512.cpp.o +[ 37%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatCuda.cpp.o +[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDouble.cpp.o /usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/veryfasttree-4.0.5+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -O3 -DUSE_CUDA=0 -fopenmp -MD -MT CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -MF CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o.d -o CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeDoubleCuda.cpp.o -c /build/reproducible-path/veryfasttree-4.0.5+dfsg/src/impl/VeryFastTreeDoubleCuda.cpp -[ 43%] Building CXX object CMakeFiles/VeryFastTree.dir/src/impl/VeryFastTreeFloatAVX512.cpp.o +[ 50%] Building CXX object CMakeFiles/VeryFastTree.dir/src/DiskMemory.cpp.o +/usr/bin/c++ -DCLI11_BOOST_OPTIONAL=0 -DNDEBUG -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/CLI11/include -I/build/reproducible-path/veryfasttree-4.0.5+dfsg/libs/bxzstr/include -g -O2 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