Diff of the two buildlogs: -- --- b1/build.log 2025-09-15 02:59:03.114649110 +0000 +++ b2/build.log 2025-09-15 11:32:03.628918191 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Oct 17 11:54:13 -12 2026 -I: pbuilder-time-stamp: 1792281253 +I: Current time: Mon Sep 15 16:59:06 +14 2025 +I: pbuilder-time-stamp: 1757905146 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying remove-python3-ipython-genutils I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3379898/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2221873/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 15 02:59 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2221873/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2221873/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e37b8fff1d994ffa9641d1f3cd8e2991' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3379898' - PS1='# ' - PS2='> ' + INVOCATION_ID=24ab400408064159a6a9b6b403e1a888 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2221873 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FsNZknbq/pbuilderrc_9L6v --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FsNZknbq/b1 --logfile b1/build.log yade_2025.2.0-2.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.FsNZknbq/pbuilderrc_2Fpt --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.FsNZknbq/b2 --logfile b2/build.log yade_2025.2.0-2.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.43+deb13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.43-1 (2025-08-27) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3379898/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2221873/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -1211,7 +1243,7 @@ Get: 996 http://deb.debian.org/debian forky/main amd64 texlive-latex-extra all 2025.20250727-3 [27.4 MB] Get: 997 http://deb.debian.org/debian forky/main amd64 tipa all 2:1.3-21 [2974 kB] Get: 998 http://deb.debian.org/debian forky/main amd64 texlive-xetex all 2025.20250727-3 [11.3 MB] -Fetched 1812 MB in 32s (56.4 MB/s) +Fetched 1812 MB in 33s (55.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19917 files and directories currently installed.) @@ -4388,8 +4420,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Oct 18 00:06:33 UTC 2026. -Universal Time is now: Sun Oct 18 00:06:33 UTC 2026. +Local time is now: Mon Sep 15 03:12:00 UTC 2025. +Universal Time is now: Mon Sep 15 03:12:00 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:amd64 (1.83.0-4.2) ... @@ -5490,7 +5522,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/yade-2025.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../yade_2025.2.0-2_source.changes +I: user script /srv/workspace/pbuilder/2221873/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2221873/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/yade-2025.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../yade_2025.2.0-2_source.changes dpkg-buildpackage: info: source package yade dpkg-buildpackage: info: source version 2025.2.0-2 dpkg-buildpackage: info: source distribution unstable @@ -5751,8 +5787,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (9.8s) --- Generating done (0.3s) +-- Configuring done (7.3s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -5988,8 +6024,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (7.2s) --- Generating done (0.2s) +-- Configuring done (3.9s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -6225,8 +6261,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (7.3s) --- Generating done (0.2s) +-- Configuring done (4.5s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -6462,8 +6498,8 @@ command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (7.3s) --- Generating done (0.2s) +-- Configuring done (3.4s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -6478,47 +6514,45 @@ mkdir -p /build/reproducible-path/yade-2025.2.0/debian/tmp #Output an information about available memory and CPU cat /proc/meminfo -MemTotal: 32870500 kB -MemFree: 2305816 kB -MemAvailable: 29499900 kB -Buffers: 3766660 kB -Cached: 22887732 kB -SwapCached: 5348 kB -Active: 1706100 kB -Inactive: 26451756 kB -Active(anon): 1501964 kB -Inactive(anon): 3372 kB -Active(file): 204136 kB -Inactive(file): 26448384 kB -Unevictable: 1600 kB -Mlocked: 64 kB +MemTotal: 24614668 kB +MemFree: 1237424 kB +MemAvailable: 22774648 kB +Buffers: 609536 kB +Cached: 20392196 kB +SwapCached: 4744 kB +Active: 1026620 kB +Inactive: 20291328 kB +Active(anon): 301288 kB +Inactive(anon): 27196 kB +Active(file): 725332 kB +Inactive(file): 20264132 kB +Unevictable: 23016 kB +Mlocked: 23016 kB SwapTotal: 25164796 kB -SwapFree: 25132352 kB -Zswap: 0 kB -Zswapped: 0 kB -Dirty: 72632 kB -Writeback: 1492 kB -AnonPages: 1493632 kB -Mapped: 196548 kB -Shmem: 1884 kB -KReclaimable: 1370144 kB -Slab: 1750844 kB -SReclaimable: 1370144 kB -SUnreclaim: 380700 kB -KernelStack: 5840 kB -PageTables: 10116 kB +SwapFree: 25118016 kB +Dirty: 1959692 kB +Writeback: 0 kB +AnonPages: 327332 kB +Mapped: 121284 kB +Shmem: 356 kB +KReclaimable: 1177856 kB +Slab: 1536860 kB +SReclaimable: 1177856 kB +SUnreclaim: 359004 kB +KernelStack: 5020 kB +PageTables: 7088 kB SecPageTables: 0 kB NFS_Unstable: 0 kB Bounce: 0 kB WritebackTmp: 0 kB -CommitLimit: 41600044 kB -Committed_AS: 1858868 kB +CommitLimit: 37472128 kB +Committed_AS: 591220 kB VmallocTotal: 34359738367 kB -VmallocUsed: 61256 kB +VmallocUsed: 51992 kB VmallocChunk: 0 kB -Percpu: 228864 kB +Percpu: 186000 kB HardwareCorrupted: 0 kB -AnonHugePages: 671744 kB +AnonHugePages: 18432 kB ShmemHugePages: 0 kB ShmemPmdMapped: 0 kB FileHugePages: 0 kB @@ -6530,9 +6564,9 @@ HugePages_Surp: 0 Hugepagesize: 2048 kB Hugetlb: 0 kB -DirectMap4k: 845676 kB -DirectMap2M: 30611456 kB -DirectMap1G: 4194304 kB +DirectMap4k: 653164 kB +DirectMap2M: 23463936 kB +DirectMap1G: 3145728 kB cat /proc/cpuinfo processor : 0 vendor_id : AuthenticAMD @@ -6541,12 +6575,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 0 -siblings : 8 +siblings : 6 core id : 0 -cpu cores : 8 +cpu cores : 6 apicid : 0 initial apicid : 0 fpu : yes @@ -6555,7 +6589,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6569,12 +6603,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 0 -siblings : 8 +siblings : 6 core id : 1 -cpu cores : 8 +cpu cores : 6 apicid : 1 initial apicid : 1 fpu : yes @@ -6583,7 +6617,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6597,12 +6631,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 0 -siblings : 8 +siblings : 6 core id : 2 -cpu cores : 8 +cpu cores : 6 apicid : 2 initial apicid : 2 fpu : yes @@ -6611,7 +6645,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6625,12 +6659,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 0 -siblings : 8 +siblings : 6 core id : 3 -cpu cores : 8 +cpu cores : 6 apicid : 3 initial apicid : 3 fpu : yes @@ -6639,7 +6673,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6653,12 +6687,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 0 -siblings : 8 +siblings : 6 core id : 4 -cpu cores : 8 +cpu cores : 6 apicid : 4 initial apicid : 4 fpu : yes @@ -6667,7 +6701,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6681,12 +6715,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 0 -siblings : 8 +siblings : 6 core id : 5 -cpu cores : 8 +cpu cores : 6 apicid : 5 initial apicid : 5 fpu : yes @@ -6695,7 +6729,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6709,68 +6743,12 @@ model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 -cache size : 512 KB -physical id : 0 -siblings : 8 -core id : 6 -cpu cores : 8 -apicid : 6 -initial apicid : 6 -fpu : yes -fpu_exception : yes -cpuid level : 13 -wp : yes -flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid -bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 -TLB size : 1024 4K pages -clflush size : 64 -cache_alignment : 64 -address sizes : 40 bits physical, 48 bits virtual -power management: - -processor : 7 -vendor_id : AuthenticAMD -cpu family : 23 -model : 49 -model name : AMD EPYC-Rome Processor -stepping : 0 -microcode : 0x1000065 -cpu MHz : 1996.250 -cache size : 512 KB -physical id : 0 -siblings : 8 -core id : 7 -cpu cores : 8 -apicid : 7 -initial apicid : 7 -fpu : yes -fpu_exception : yes -cpuid level : 13 -wp : yes -flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid -bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 -TLB size : 1024 4K pages -clflush size : 64 -cache_alignment : 64 -address sizes : 40 bits physical, 48 bits virtual -power management: - -processor : 8 -vendor_id : AuthenticAMD -cpu family : 23 -model : 49 -model name : AMD EPYC-Rome Processor -stepping : 0 -microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 1 -siblings : 8 +siblings : 6 core id : 0 -cpu cores : 8 +cpu cores : 6 apicid : 8 initial apicid : 8 fpu : yes @@ -6779,26 +6757,26 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 address sizes : 40 bits physical, 48 bits virtual power management: -processor : 9 +processor : 7 vendor_id : AuthenticAMD cpu family : 23 model : 49 model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 1 -siblings : 8 +siblings : 6 core id : 1 -cpu cores : 8 +cpu cores : 6 apicid : 9 initial apicid : 9 fpu : yes @@ -6807,26 +6785,26 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 address sizes : 40 bits physical, 48 bits virtual power management: -processor : 10 +processor : 8 vendor_id : AuthenticAMD cpu family : 23 model : 49 model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 1 -siblings : 8 +siblings : 6 core id : 2 -cpu cores : 8 +cpu cores : 6 apicid : 10 initial apicid : 10 fpu : yes @@ -6835,26 +6813,26 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 address sizes : 40 bits physical, 48 bits virtual power management: -processor : 11 +processor : 9 vendor_id : AuthenticAMD cpu family : 23 model : 49 model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 1 -siblings : 8 +siblings : 6 core id : 3 -cpu cores : 8 +cpu cores : 6 apicid : 11 initial apicid : 11 fpu : yes @@ -6863,26 +6841,26 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 address sizes : 40 bits physical, 48 bits virtual power management: -processor : 12 +processor : 10 vendor_id : AuthenticAMD cpu family : 23 model : 49 model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 1 -siblings : 8 +siblings : 6 core id : 4 -cpu cores : 8 +cpu cores : 6 apicid : 12 initial apicid : 12 fpu : yes @@ -6891,26 +6869,26 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 address sizes : 40 bits physical, 48 bits virtual power management: -processor : 13 +processor : 11 vendor_id : AuthenticAMD cpu family : 23 model : 49 model name : AMD EPYC-Rome Processor stepping : 0 microcode : 0x1000065 -cpu MHz : 1996.250 +cpu MHz : 2196.688 cache size : 512 KB physical id : 1 -siblings : 8 +siblings : 6 core id : 5 -cpu cores : 8 +cpu cores : 6 apicid : 13 initial apicid : 13 fpu : yes @@ -6919,63 +6897,7 @@ wp : yes flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 -TLB size : 1024 4K pages -clflush size : 64 -cache_alignment : 64 -address sizes : 40 bits physical, 48 bits virtual -power management: - -processor : 14 -vendor_id : AuthenticAMD -cpu family : 23 -model : 49 -model name : AMD EPYC-Rome Processor -stepping : 0 -microcode : 0x1000065 -cpu MHz : 1996.250 -cache size : 512 KB -physical id : 1 -siblings : 8 -core id : 6 -cpu cores : 8 -apicid : 14 -initial apicid : 14 -fpu : yes -fpu_exception : yes -cpuid level : 13 -wp : yes -flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid -bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 -TLB size : 1024 4K pages -clflush size : 64 -cache_alignment : 64 -address sizes : 40 bits physical, 48 bits virtual -power management: - -processor : 15 -vendor_id : AuthenticAMD -cpu family : 23 -model : 49 -model name : AMD EPYC-Rome Processor -stepping : 0 -microcode : 0x1000065 -cpu MHz : 1996.250 -cache size : 512 KB -physical id : 1 -siblings : 8 -core id : 7 -cpu cores : 8 -apicid : 15 -initial apicid : 15 -fpu : yes -fpu_exception : yes -cpuid level : 13 -wp : yes -flags : fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ht syscall nx mmxext fxsr_opt pdpe1gb rdtscp lm rep_good nopl xtopology cpuid extd_apicid tsc_known_freq pni pclmulqdq ssse3 fma cx16 sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm cmp_legacy cr8_legacy abm sse4a misalignsse 3dnowprefetch osvw topoext perfctr_core ibpb stibp vmmcall fsgsbase bmi1 avx2 smep bmi2 rdseed adx smap clflushopt clwb sha_ni xsaveopt xsavec xgetbv1 clzero xsaveerptr wbnoinvd arat umip rdpid -bugs : sysret_ss_attrs null_seg spectre_v1 spectre_v2 spec_store_bypass retbleed smt_rsb srso ibpb_no_ret -bogomips : 3992.50 +bogomips : 4393.37 TLB size : 1024 4K pages clflush size : 64 cache_alignment : 64 @@ -6992,19 +6914,6 @@ /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/yade-2025.2.0/debian/build-double/CMakeFiles /build/reproducible-path/yade-2025.2.0/debian/build-double//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -make -f CMakeFiles/post_vtk.dir/build.make CMakeFiles/post_vtk.dir/depend -make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -cd /build/reproducible-path/yade-2025.2.0/debian/build-double && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double/CMakeFiles/post_vtk.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -make -f CMakeFiles/post_vtk.dir/build.make CMakeFiles/post_vtk.dir/build -make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 0%] Building CXX object CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o -/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_NO_KEYWORDS -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -Dkiss_fft_scalar=double -Dpost_vtk_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include/GL -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/yade-2025.2.0/debian/build-double -I/build/reproducible-path/yade-2025.2.0/debian/build-double/pkg/pfv -isystem /usr/include/vtk-9.3 -g -O2 -ffile-prefix-map=/build/reproducible-path/yade-2025.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -Wformat -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith 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/usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_log.so.1.83.0 /usr/lib/x86_64-linux-gnu/libvtkIOParallelXML-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkIOXML-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkImagingGeneral-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkImagingHybrid-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libtbb.so.12.15 /usr/lib/x86_64-linux-gnu/libvtksys-9.3.so.9.3 -ldl -make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 1%] Built target post_vtk make -f gui/CMakeFiles/_GLViewer_autogen_timestamp_deps.dir/build.make gui/CMakeFiles/_GLViewer_autogen_timestamp_deps.dir/depend make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' cd /build/reproducible-path/yade-2025.2.0/debian/build-double && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0/gui /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double/gui /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/CMakeFiles/_GLViewer_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" @@ -7013,29 +6922,29 @@ make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' make[4]: Nothing to be done for 'gui/CMakeFiles/_GLViewer_autogen_timestamp_deps.dir/build'. make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 1%] Built target _GLViewer_autogen_timestamp_deps +[ 0%] Built target _GLViewer_autogen_timestamp_deps make -f gui/CMakeFiles/_GLViewer_autogen.dir/build.make gui/CMakeFiles/_GLViewer_autogen.dir/depend make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' cd /build/reproducible-path/yade-2025.2.0/debian/build-double && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0/gui /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double/gui /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/CMakeFiles/_GLViewer_autogen.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' make -f gui/CMakeFiles/_GLViewer_autogen.dir/build.make gui/CMakeFiles/_GLViewer_autogen.dir/build make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 2%] Automatic MOC for target _GLViewer +[ 1%] Automatic MOC for target _GLViewer cd /build/reproducible-path/yade-2025.2.0/debian/build-double/gui && /usr/bin/cmake -E cmake_autogen /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/CMakeFiles/_GLViewer_autogen.dir/AutogenInfo.json None AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/debian/build-double/gui/_GLViewer_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=gnu++14 -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/yade-2025.2.0/debian/build-double -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include AutoGen: Parsing "SRC:/gui/qt5/GLViewer.hpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" -AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" AutoGen: Parsing "SRC:/gui/qt5/GLViewerDisplay.cpp" AutoGen: Parsing "SRC:/gui/qt5/_GLViewer.cpp" AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.hpp" -AutoMoc: Generating "SRC:/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp", because it doesn't exist, from "SRC:/gui/qt5/GLViewer.hpp" -/usr/lib/qt5/bin/moc -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/yade-2025.2.0/debian/build-double -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include --include /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp /build/reproducible-path/yade-2025.2.0/gui/qt5/GLViewer.hpp +AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" AutoMoc: Generating "SRC:/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_OpenGLManager.cpp", because it doesn't exist, from "SRC:/gui/qt5/OpenGLManager.hpp" /usr/lib/qt5/bin/moc -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/yade-2025.2.0/debian/build-double -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include --include /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_OpenGLManager.cpp /build/reproducible-path/yade-2025.2.0/gui/qt5/OpenGLManager.hpp +AutoMoc: Generating "SRC:/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp", because it doesn't exist, from "SRC:/gui/qt5/GLViewer.hpp" +/usr/lib/qt5/bin/moc -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/yade-2025.2.0/debian/build-double -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include --include /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp /build/reproducible-path/yade-2025.2.0/gui/qt5/GLViewer.hpp AutoMoc: Reading dependencies from "SRC:/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_OpenGLManager.cpp.d" AutoMoc: Reading dependencies from "SRC:/debian/build-double/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp.d" AutoMoc: Generating MOC compilation "SRC:/debian/build-double/gui/_GLViewer_autogen/mocs_compilation.cpp" @@ -7044,7 +6953,7 @@ AutoGen: Writing the settings file "SRC:/debian/build-double/gui/CMakeFiles/_GLViewer_autogen.dir/AutogenUsed.txt" cd /build/reproducible-path/yade-2025.2.0/debian/build-double/gui && /usr/bin/cmake -E touch /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/timestamp make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 2%] Built target _GLViewer_autogen +[ 1%] Built target _GLViewer_autogen make -f gui/CMakeFiles/_GLViewer.dir/build.make gui/CMakeFiles/_GLViewer.dir/depend make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' cd /build/reproducible-path/yade-2025.2.0/debian/build-double && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0/gui /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double/gui /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/CMakeFiles/_GLViewer.dir/DependInfo.cmake "--color=" @@ -7053,52 +6962,52 @@ make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' make -f gui/CMakeFiles/_GLViewer.dir/build.make gui/CMakeFiles/_GLViewer.dir/build make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 2%] Building CXX object gui/CMakeFiles/_GLViewer.dir/_GLViewer_autogen/mocs_compilation.cpp.o +[ 1%] Building CXX object gui/CMakeFiles/_GLViewer.dir/_GLViewer_autogen/mocs_compilation.cpp.o cd /build/reproducible-path/yade-2025.2.0/debian/build-double/gui && /usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/include -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/usr/lib/python3/dist-packages/mpi4py/include -I/usr/lib/x86_64-linux-gnu/openmpi/include -I/usr/lib/x86_64-linux-gnu/openmpi/include/openmpi -I/build/reproducible-path/yade-2025.2.0/debian/build-double -I/usr/include/QGLViewer -isystem /usr/include/x86_64-linux-gnu/qt5 -isystem /usr/include/x86_64-linux-gnu/qt5/QtCore -isystem /usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/x86_64-linux-gnu/qt5/QtWidgets -isystem /usr/include/x86_64-linux-gnu/qt5/QtGui -isystem /usr/include/x86_64-linux-gnu/qt5/QtXml -isystem /usr/include/x86_64-linux-gnu/qt5/QtOpenGL -g -O2 -ffile-prefix-map=/build/reproducible-path/yade-2025.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -Wformat -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith -Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor -Wreturn-local-addr -Wsuggest-override -Wshadow -Wswitch-default -Wno-error=maybe-uninitialized -Wno-error=array-bounds= -Wno-error=cpp -fdce -fstack-protector-strong -DYADE_VTK -DYADE_OPENMP -fopenmp -DYADE_GTS -DQGLVIEWER_FOUND -DYADE_OPENGL -DYADE_QT5 -DYADE_MPI -DYADE_GL2PS -DLBM_ENGINE -std=gnu++14 -fPIC -ftrack-macro-expansion=0 -save-temps -DEIGEN_DONT_VECTORIZE -DEIGEN_DONT_ALIGN -DEIGEN_DISABLE_UNALIGNED_ARRAY_ASSERT -fPIC -MD -MT gui/CMakeFiles/_GLViewer.dir/_GLViewer_autogen/mocs_compilation.cpp.o -MF CMakeFiles/_GLViewer.dir/_GLViewer_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/_GLViewer.dir/_GLViewer_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/yade-2025.2.0/debian/build-double/gui/_GLViewer_autogen/mocs_compilation.cpp -[ 2%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt5/GLViewer.cpp.o +[ 1%] Building CXX object gui/CMakeFiles/_GLViewer.dir/qt5/GLViewer.cpp.o cd 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-Wl,--no-as-needed,-no-keep-memory -shared -Wl,-soname,_GLViewer.so -o lib/x86_64-linux-gnu/_GLViewer.so CMakeFiles/_GLViewer.dir/_GLViewer_autogen/mocs_compilation.cpp.o CMakeFiles/_GLViewer.dir/qt5/GLViewer.cpp.o CMakeFiles/_GLViewer.dir/qt5/_GLViewer.cpp.o CMakeFiles/_GLViewer.dir/qt5/OpenGLManager.cpp.o CMakeFiles/_GLViewer.dir/qt5/GLViewerDisplay.cpp.o CMakeFiles/_GLViewer.dir/qt5/GLViewerMouse.cpp.o /usr/lib/x86_64-linux-gnu/libglut.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libQGLViewer-qt5.so /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libgl2ps.so /usr/lib/x86_64-linux-gnu/libQt5Xml.so.5.15.17 /usr/lib/x86_64-linux-gnu/libQt5OpenGL.so.5.15.17 /usr/lib/x86_64-linux-gnu/libglut.so /usr/lib/x86_64-linux-gnu/libOpenGL.so /usr/lib/x86_64-linux-gnu/libGLX.so /usr/lib/x86_64-linux-gnu/libGLU.so /usr/lib/x86_64-linux-gnu/libQGLViewer-qt5.so /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_log.so.1.83.0 /usr/lib/x86_64-linux-gnu/libpython3.13.so /usr/lib/x86_64-linux-gnu/libgl2ps.so /usr/lib/x86_64-linux-gnu/libQt5Widgets.so.5.15.17 /usr/lib/x86_64-linux-gnu/libQt5Gui.so.5.15.17 /usr/lib/x86_64-linux-gnu/libQt5Core.so.5.15.17 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 5%] Built target _GLViewer +[ 4%] Built target _GLViewer make -f 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-Wnon-virtual-dtor -Wreturn-local-addr -Wsuggest-override -Wshadow -Wswitch-default -Wno-error=maybe-uninitialized -Wno-error=array-bounds= -Wno-error=cpp -fdce -fstack-protector-strong -DYADE_VTK -DYADE_OPENMP -fopenmp -DYADE_GTS -DQGLVIEWER_FOUND -DYADE_OPENGL -DYADE_QT5 -DYADE_MPI -DYADE_GL2PS -DLBM_ENGINE -std=gnu++14 -fPIC -ftrack-macro-expansion=0 -save-temps -DEIGEN_DONT_VECTORIZE -DEIGEN_DONT_ALIGN -DEIGEN_DISABLE_UNALIGNED_ARRAY_ASSERT -MD -MT CMakeFiles/post_image.dir/postprocessing/image/SnapshotEngine.cpp.o -MF CMakeFiles/post_image.dir/postprocessing/image/SnapshotEngine.cpp.o.d -o CMakeFiles/post_image.dir/postprocessing/image/SnapshotEngine.cpp.o -c /build/reproducible-path/yade-2025.2.0/postprocessing/image/SnapshotEngine.cpp -[ 77%] Linking CXX shared library lib/x86_64-linux-gnu/libpost_image.so +[ 76%] Linking CXX shared library lib/x86_64-linux-gnu/libpost_image.so /usr/bin/cmake -E cmake_link_script CMakeFiles/post_image.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/yade-2025.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror -Wformat -Wformat-security -Wformat-nonliteral -Wall -Wextra -Wnarrowing -Wreturn-type -Wuninitialized -Wfloat-conversion -Wcast-align -Wdisabled-optimization -Wtrampolines -Wpointer-arith -Wswitch-bool -Wwrite-strings -Wnon-virtual-dtor -Wreturn-local-addr -Wsuggest-override -Wshadow -Wswitch-default -Wno-error=maybe-uninitialized -Wno-error=array-bounds= -Wno-error=cpp -fdce -fstack-protector-strong -DYADE_VTK -DYADE_OPENMP -fopenmp -DYADE_GTS -DQGLVIEWER_FOUND -DYADE_OPENGL -DYADE_QT5 -DYADE_MPI -DYADE_GL2PS -DLBM_ENGINE -Wl,--as-needed -Wl,--dependency-file=CMakeFiles/post_image.dir/link.d -Wl,-z,relro -Wl,--no-as-needed,-no-keep-memory -shared -Wl,-soname,libpost_image.so -o lib/x86_64-linux-gnu/libpost_image.so CMakeFiles/post_image.dir/postprocessing/image/SnapshotEngine.cpp.o /usr/lib/x86_64-linux-gnu/libboost_python313.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_iostreams.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_serialization.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_log.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' -[ 77%] Built target post_image +[ 76%] Built target post_image +make -f CMakeFiles/post_vtk.dir/build.make CMakeFiles/post_vtk.dir/depend +make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' +cd /build/reproducible-path/yade-2025.2.0/debian/build-double && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double/CMakeFiles/post_vtk.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' +make -f CMakeFiles/post_vtk.dir/build.make CMakeFiles/post_vtk.dir/build +make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' +[ 76%] Building CXX object CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o +/usr/bin/c++ -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_NO_KEYWORDS -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_LS_DEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=64 -DYADE_REAL_DEC=15 -Dkiss_fft_scalar=double -Dpost_vtk_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets 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-Wno-error=array-bounds= -Wno-error=cpp -fdce -fstack-protector-strong -DYADE_VTK -DYADE_OPENMP -fopenmp -DYADE_GTS -DQGLVIEWER_FOUND -DYADE_OPENGL -DYADE_QT5 -DYADE_MPI -DYADE_GL2PS -DLBM_ENGINE -std=gnu++14 -fPIC -ftrack-macro-expansion=0 -save-temps -DEIGEN_DONT_VECTORIZE -DEIGEN_DONT_ALIGN -DEIGEN_DISABLE_UNALIGNED_ARRAY_ASSERT -MD -MT CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o -MF CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o.d -o CMakeFiles/post_vtk.dir/postprocessing/vtk/VTKRecorder.cpp.o -c /build/reproducible-path/yade-2025.2.0/postprocessing/vtk/VTKRecorder.cpp +[ 77%] Linking CXX shared library lib/x86_64-linux-gnu/libpost_vtk.so +/usr/bin/cmake -E cmake_link_script CMakeFiles/post_vtk.dir/link.txt --verbose=1 +/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/yade-2025.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -g0 -Wdate-time -D_FORTIFY_SOURCE=2 -Werror 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/usr/lib/x86_64-linux-gnu/libboost_system.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_date_time.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_log.so.1.83.0 /usr/lib/x86_64-linux-gnu/libvtkIOParallelXML-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkIOXML-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkRenderingCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkImagingGeneral-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkImagingHybrid-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersSources-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libboost_thread.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_filesystem.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_regex.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_atomic.so.1.83.0 /usr/lib/x86_64-linux-gnu/libboost_chrono.so.1.83.0 /usr/lib/x86_64-linux-gnu/libvtkIOXMLParser-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersGeneral-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkFiltersCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkIOImage-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkImagingCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonExecutionModel-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonDataModel-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMisc-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonTransforms-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonMath-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkkissfft-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libvtkCommonCore-9.3.so.9.3 /usr/lib/x86_64-linux-gnu/libtbb.so.12.15 /usr/lib/x86_64-linux-gnu/libvtksys-9.3.so.9.3 -ldl +make[4]: Leaving directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' +[ 77%] Built target post_vtk make -f CMakeFiles/boot.dir/build.make CMakeFiles/boot.dir/depend make[4]: Entering directory '/build/reproducible-path/yade-2025.2.0/debian/build-double' cd /build/reproducible-path/yade-2025.2.0/debian/build-double && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0 /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double /build/reproducible-path/yade-2025.2.0/debian/build-double/CMakeFiles/boot.dir/DependInfo.cmake "--color=" @@ -8992,12 +8914,12 @@ AutoMoc: Generating "SRC:/debian/build-longdouble/gui/_GLViewer_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=gnu++17 -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=80 -DYADE_REAL_DEC=18 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/build/reproducible-path/yade-2025.2.0/debian/build-longdouble -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include AutoGen: Parsing "SRC:/gui/qt5/GLViewer.hpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" -AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewerDisplay.cpp" AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.hpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewerDisplay.cpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" AutoGen: Parsing "SRC:/gui/qt5/_GLViewer.cpp" +AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" AutoMoc: Generating "SRC:/debian/build-longdouble/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp", because it doesn't exist, from "SRC:/gui/qt5/GLViewer.hpp" /usr/lib/qt5/bin/moc -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=80 -DYADE_REAL_DEC=18 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/build/reproducible-path/yade-2025.2.0/debian/build-longdouble -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include --include /build/reproducible-path/yade-2025.2.0/debian/build-longdouble/gui/_GLViewer_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/yade-2025.2.0/debian/build-longdouble/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp /build/reproducible-path/yade-2025.2.0/gui/qt5/GLViewer.hpp AutoMoc: Generating "SRC:/debian/build-longdouble/gui/_GLViewer_autogen/OXRBQHTNNB/moc_OpenGLManager.cpp", because it doesn't exist, from "SRC:/gui/qt5/OpenGLManager.hpp" @@ -10778,12 +10700,12 @@ AutoMoc: Generating "SRC:/debian/build-float128/gui/_GLViewer_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -std=gnu++17 -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=128 -DYADE_REAL_DEC=33 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/build/reproducible-path/yade-2025.2.0/debian/build-float128 -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include AutoGen: Parsing "SRC:/gui/qt5/GLViewer.hpp" -AutoGen: Parsing "SRC:/gui/qt5/_GLViewer.cpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" AutoGen: Parsing "SRC:/gui/qt5/GLViewerDisplay.cpp" -AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.hpp" +AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" +AutoGen: Parsing "SRC:/gui/qt5/_GLViewer.cpp" AutoMoc: Generating "SRC:/debian/build-float128/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp", because it doesn't exist, from "SRC:/gui/qt5/GLViewer.hpp" /usr/lib/qt5/bin/moc -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=128 -DYADE_REAL_DEC=33 -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/build/reproducible-path/yade-2025.2.0/debian/build-float128 -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include --include /build/reproducible-path/yade-2025.2.0/debian/build-float128/gui/_GLViewer_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/yade-2025.2.0/debian/build-float128/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp /build/reproducible-path/yade-2025.2.0/gui/qt5/GLViewer.hpp AutoMoc: Generating "SRC:/debian/build-float128/gui/_GLViewer_autogen/OXRBQHTNNB/moc_OpenGLManager.cpp", because it doesn't exist, from "SRC:/gui/qt5/OpenGLManager.hpp" @@ -19243,11 +19165,11 @@ /usr/bin/c++ -std=gnu++17 -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=498 -DYADE_REAL_DEC=150 -DYADE_REAL_MPFR -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/build/reproducible-path/yade-2025.2.0/debian/build-mpfr150 -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include AutoGen: Parsing "SRC:/gui/qt5/GLViewer.hpp" AutoGen: Parsing "SRC:/gui/qt5/GLViewer.cpp" -AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" AutoGen: Parsing "SRC:/gui/qt5/GLViewerDisplay.cpp" +AutoGen: Parsing "SRC:/gui/qt5/GLViewerMouse.cpp" +AutoGen: Parsing "SRC:/gui/qt5/_GLViewer.cpp" AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.cpp" AutoGen: Parsing "SRC:/gui/qt5/OpenGLManager.hpp" -AutoGen: Parsing "SRC:/gui/qt5/_GLViewer.cpp" AutoMoc: Generating "SRC:/debian/build-mpfr150/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp", because it doesn't exist, from "SRC:/gui/qt5/GLViewer.hpp" /usr/lib/qt5/bin/moc -DBOOST_ATOMIC_DYN_LINK -DBOOST_ATOMIC_NO_LIB -DBOOST_CHRONO_DYN_LINK -DBOOST_CHRONO_NO_LIB -DBOOST_DATE_TIME_DYN_LINK -DBOOST_DATE_TIME_NO_LIB -DBOOST_FILESYSTEM_DYN_LINK -DBOOST_FILESYSTEM_NO_LIB -DBOOST_IOSTREAMS_DYN_LINK -DBOOST_IOSTREAMS_NO_LIB -DBOOST_LOG_DYN_LINK -DBOOST_LOG_NO_LIB -DBOOST_PYTHON_DYN_LINK -DBOOST_PYTHON_NO_LIB -DBOOST_REGEX_DYN_LINK -DBOOST_REGEX_NO_LIB -DBOOST_SERIALIZATION_DYN_LINK -DBOOST_SERIALIZATION_NO_LIB -DBOOST_SYSTEM_DYN_LINK -DBOOST_SYSTEM_NO_LIB -DBOOST_THREAD_DYN_LINK -DBOOST_THREAD_NO_LIB -DFREEGLUT_VERSION_MAJOR=3 -DMAX_LOG_LEVEL=5 -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_NO_KEYWORDS -DQT_OPENGL_LIB -DQT_WIDGETS_LIB -DQT_XML_LIB -DYADE_BOOST_LOG -DYADE_COMPLEX_MP -DYADE_FEM -DYADE_MPFR -DYADE_ODEINT -DYADE_POTENTIAL_PARTICLES -DYADE_REAL_BIT=498 -DYADE_REAL_DEC=150 -DYADE_REAL_MPFR -D_GLViewer_EXPORTS -I/build/reproducible-path/yade-2025.2.0 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I/usr/include/python3.13 -I/usr/include/eigen3 -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -I/usr/include/GL -I/build/reproducible-path/yade-2025.2.0/debian/build-mpfr150 -I/usr/include/QGLViewer -I/usr/include/x86_64-linux-gnu/qt5 -I/usr/include/x86_64-linux-gnu/qt5/QtCore -I/usr/lib/x86_64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/x86_64-linux-gnu/qt5/QtWidgets -I/usr/include/x86_64-linux-gnu/qt5/QtGui -I/usr/include/x86_64-linux-gnu/qt5/QtXml -I/usr/include/x86_64-linux-gnu/qt5/QtOpenGL -I/usr/include -I/usr/include/x86_64-linux-gnu -I/usr/include/c++/15 -I/usr/include/x86_64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/x86_64-linux-gnu/15/include -I/usr/local/include --include /build/reproducible-path/yade-2025.2.0/debian/build-mpfr150/gui/_GLViewer_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/yade-2025.2.0/debian/build-mpfr150/gui/_GLViewer_autogen/OXRBQHTNNB/moc_GLViewer.cpp /build/reproducible-path/yade-2025.2.0/gui/qt5/GLViewer.hpp AutoMoc: Generating "SRC:/debian/build-mpfr150/gui/_GLViewer_autogen/OXRBQHTNNB/moc_OpenGLManager.cpp", because it doesn't exist, from "SRC:/gui/qt5/OpenGLManager.hpp" @@ -27629,69 +27551,69 @@ -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/compareScreenshotsParts.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/testGuiHelper.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_6 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_6/10.vtm --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_6/10 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_6/10/10_0.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_6/10/10_2.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_6/10/10_1.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.1 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.1/10.vtm --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.1/10 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.1/10/10_0.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.1/10/10_2.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/joints.csv +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/100spheres +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/checkColider.txt -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2/10.vtm -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2/10 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2/10/10_0.vtu -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2/10/10_2.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/checkTestTriax.spheres --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/100spheres --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/checkJCFpm.spheres --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_9 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_9/10.vtm --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_9/10 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_9/10/10_0.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_9/10/10_2.vtp +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2/10/10_0.vtu +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/vtk_reference_8.2/10.vtm -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver8.2 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver8.2/pp-pb.10.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver8.2/ppvel.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver8.2/ppId.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver8.2/ppcontactPoint.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/pp-pb.10.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/pbvel.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/pbId.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/ppvel.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/pb-pb.10.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/ppId.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/pbcontactPoint.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/ppcontactPoint.10.vtu -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver9 --- Installing: 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Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver9/pbcontactPoint.10.vtu +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver9/pbId.10.vtu -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver9/ppcontactPoint.10.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/WallStressesCheckTest --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/checkColider.txt +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/checks/data/potentialVTKRecorders/ver9/pb-pb.10.vtp +-- Installing: 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/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/minieigenHP.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/testMathHelper.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/ymport-files -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/ymport-files/polyMesh +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/ymport-files/polyMesh/neighbour -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/ymport-files/polyMesh/owner --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/tests/ymport-files/polyMesh/boundary --- Installing: 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portion of runtime path of "/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/boot.so" to "$ORIGIN/../..:$ORIGIN/qt:/usr/lib/x86_64-linux-gnu/openmpi/lib" @@ -27867,69 +27789,69 @@ -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/compareScreenshotsParts.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/testGuiHelper.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/vtk_reference_6 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/vtk_reference_6/10.vtm --- Installing: 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Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/potentialVTKRecorders/ver9/ppvel.10.vtu +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/potentialVTKRecorders/ver9/pp-pb.10.vtp +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1 +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/ppId.10.vtu +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/checks/data/potentialVTKRecorders/ver6-8.1/pbcontactPoint.10.vtu +-- Installing: 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Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/ymport-files/polyMesh/points --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/ymport-files/polyMesh/neighbour +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/ymport-files/polyMesh/faces +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/ymport-files/polyMesh/boundary -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/tests/ymport-files/blockMeshDict -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/boot.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/boot.so" to "$ORIGIN/../..:$ORIGIN/qt" @@ -28105,69 +28027,69 @@ -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/compareScreenshotsParts.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/testGuiHelper.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/vtk_reference_6 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/vtk_reference_6/10.vtm --- Installing: 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/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/vtk_reference_8.1/10 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/vtk_reference_8.1/10/10_0.vtu --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/vtk_reference_8.1/10/10_2.vtp --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/joints.csv +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/100spheres +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/checks/data/checkColider.txt -- Installing: 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/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/testMathHelper.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/neighbour -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/owner --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/boundary --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/faces -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/points --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/neighbour +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/faces +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/polyMesh/boundary -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/tests/ymport-files/blockMeshDict -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/boot.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/boot.so" to "$ORIGIN/../..:$ORIGIN/qt" @@ -28343,69 +28265,69 @@ -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/compareScreenshotsParts.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/testGuiHelper.py -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_6 --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_6/10.vtm --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_6/10 --- Installing: 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Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_8.1 +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_8.1/10 +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_8.1/10/10_2.vtp +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_8.1/10/10_0.vtu +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/vtk_reference_8.1/10.vtm -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/checks/data/checkColliderCorrect.txt +-- Installing: 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/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/neighbour -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/owner --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/boundary --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/faces -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/points --- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/neighbour +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/faces +-- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/polyMesh/boundary -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/tests/ymport-files/blockMeshDict -- Installing: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/boot.so -- Set non-toolchain portion of runtime path of "/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/boot.so" to "$ORIGIN/../..:$ORIGIN/qt" @@ -28725,10 +28647,10 @@ testMotion (yade.tests.cohesive-chain.TestCohesiveChain.testMotion) CohesiveChain: velocity/positions tested in transient dynamics and equilibrium state ... /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/gridpfacet.py:57: UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead. See examples/grids/CohesiveGridConnectionSphere.py. warnings.warn( - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (2-3), if it is not intentional you may want to check input parameters. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (0-1), if it is not intentional you may want to check input parameters. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 4-5), check etaRoll and etaTwist of the materials if it is not intentional. Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 5-6), check etaRoll and etaTwist of the materials if it is not intentional. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). ok testKinematicEngines (yade.TestKinematicEngines.testKinematicEngines) Engines: kinematic engines ... ok @@ -29271,130 +29193,30 @@ Doctest: yade.utils.typedEngine ... ok ---------------------------------------------------------------------- -Ran 97 tests in 9.155s +Ran 97 tests in 5.750s OK *** ALL TESTS PASSED *** Entered the initialization functionLD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-double --check <WARNING> GravityEngine:24 virtual void yade::GravityEngine::action(): GravityEngine is deprecated, consider using Newton::gravity instead. -... ----------------------------------------------------------------------- -Ran 3 tests in 0.105s - -OK Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] ################################### -running: checkAvoidSelfInteractionMask.py -testing collider.avoidSelfInteractionMask -0 bb br gg gr rr -1 bb br gr -2 br gg gr -3 br gr -Status: success, time spent on this check: 0:00:00.005602 -___________________________________ -################################### -Skipping checkJCFpm.py, because it is in skipScripts. -################################### -running: checkBlockGen.py -skip BlockGen check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.002961 -___________________________________ -################################### -running: checkPotentialParticles.py -Status: success, time spent on this check: 0:00:00.044406 -___________________________________ -################################### -Skipping checkMPI4PYcomm.py, because it is in skipScripts. -################################### -running: checkColliderCorrectness.py -checkColliderCorrectness for InsertionSortCollider -Status: success, time spent on this check: 0:00:00.827157 -___________________________________ -################################### -running: checkAlpha.py -CGAL not in features, skip -Status: success, time spent on this check: 0:00:00.009787 -___________________________________ -################################### -Skipping checkFlipSpheres.py, because it is in slowScripts. -################################### -running: checkLS_DEM_pbc.py -Periodic boundary conditions for LS-DEM as correct as expected -Status: success, time spent on this check: 0:00:08.114339 -___________________________________ -################################### -running: checkViscElBC.py -Status: success, time spent on this check: 0:00:00.042707 -___________________________________ -################################### -running: checkGravityRungeKuttaCashKarp54.py -checkGravityRungeKuttaCashKarp54.py : yade precision is 15 decimal places. Will use error tolerance of: 1e-12 -Note: for high precision calculations use yade.math.toHP1(...) see this: -g = yade.math.toHP1('-9.81') ## produces: -9.81 -g = -9.81 ## produces: -9.81 -See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:00.123401 -___________________________________ -################################### -running: checkWirePM.py -Status: success, time spent on this check: 0:00:02.057153 -___________________________________ -################################### -running: checkLubricationWithRoughness.py -Status: success, time spent on this check: 0:00:00.444542 -___________________________________ -################################### -running: checkVTKRecorder.py -checkVTKRecorder -Check file 10.vtm -Check file 10/10_0.vtu -Check file 10/10_2.vtp -Status: success, time spent on this check: 0:00:00.109895 -___________________________________ -################################### -running: checkHertzExtended.py -This checkHertzExtended.py cannot be executed because CGAL is disabled -Status: success, time spent on this check: 0:00:00.004080 -___________________________________ -################################### -running: checkSetPerm.py -Status: success, time spent on this check: 0:00:00.042121 -___________________________________ -################################### -running: checkPotentialVTKRecorders.py -checking file: /tmp/tmp5wdav5yv/potentialVTKRecorders/ppcontactPoint.10.vtu -checking file: /tmp/tmp5wdav5yv/potentialVTKRecorders/ppId.10.vtu -checking file: /tmp/tmp5wdav5yv/potentialVTKRecorders/pp-pb.10.vtp -checking file: /tmp/tmp5wdav5yv/potentialVTKRecorders/ppvel.10.vtu -non-matching lines: 0 -skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available -Status: success, time spent on this check: 0:00:00.113261 -___________________________________ -################################### -Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +Skipping colliderTorture.py, because it is in slowScripts. ################################### -running: checkDEM-PFVPressureInjection.py -This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled -Status: success, time spent on this check: 0:00:00.004985 -___________________________________ +Skipping checkMPYcomm.py, because it is in skipScripts. ################################### -running: checkLubrication.py -Status: success, time spent on this check: 0:00:00.404037 +running: checkTestDummy.py +checkTest mechanism +Status: success, time spent on this check: 0:00:00.294827 ___________________________________ ################################### -Skipping checkMPISilo.py, because it is in slowScripts. -################################### -Skipping checkMPI.py, because it is in skipScripts. -################################### -Skipping checkMPYcomm.py, because it is in skipScripts. +Skipping checkClumpHopper.py, because it is in slowScripts. ################################### -running: checkTestTriax.py -File ./checkTest.yade moved into /tmp/tmpnd28isnc/ directory -File ./_Unloaded_380_3.spheres moved into /tmp/tmpnd28isnc/ directory -File ./_Unloaded_380_3.xml moved into /tmp/tmpnd28isnc/ directory -File ./WallStresses moved into /tmp/tmpnd28isnc/ directory -Status: success, time spent on this check: 0:00:01.152178 +running: checkViscElEng.py +Precalculated en value 0.736356797441 +Obtained en value 0.736356797441 +Status: success, time spent on this check: 0:00:00.248919 ___________________________________ ################################### running: checkCohesiveFrictionalLaw.py @@ -29420,21 +29242,57 @@ [1.0, 1, 98.89999999999866, 30.0, 0.0, 0.0] [1.0, 1, 98.89999999999866, 54.02931624555014, 0.0, 0.0] CohesiveFrictional model passed with difference = 0.0 -Status: success, time spent on this check: 0:00:00.532244 +Status: success, time spent on this check: 0:00:00.530998 +___________________________________ +################################### +running: checkViscElBC.py +Status: success, time spent on this check: 0:00:00.042326 +___________________________________ +################################### +running: checkGravityRungeKuttaCashKarp54.py +checkGravityRungeKuttaCashKarp54.py : yade precision is 15 decimal places. Will use error tolerance of: 1e-12 +Note: for high precision calculations use yade.math.toHP1(...) see this: +g = yade.math.toHP1('-9.81') ## produces: -9.81 +g = -9.81 ## produces: -9.81 +See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. +Status: success, time spent on this check: 0:00:00.083047 +___________________________________ +################################### +running: check_TwoPhaseFlowEngine_PressureInjection.py +This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled +Status: success, time spent on this check: 0:00:00.004246 +___________________________________ +################################### +Skipping checkJCFpm.py, because it is in skipScripts. +################################### +running: checkPotentialParticles.py +Status: success, time spent on this check: 0:00:00.043035 ___________________________________ ################################### running: checkViscElPM.py -Status: success, time spent on this check: 0:00:00.045548 +Status: success, time spent on this check: 0:00:00.044083 ___________________________________ ################################### -Skipping DEM-PFV-check.py, because it is in skipScripts. +Skipping checkPolyhedraCrush.py, because it is in skipScripts. ################################### -running: checkViscElPM2.py -Status: success, time spent on this check: 0:00:00.123585 +running: checkBlockGen.py +skip BlockGen check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.002491 ___________________________________ ################################### -running: checkRotAlgorithmNonSpherical.py -Status: success, time spent on this check: 0:00:12.307649 +Skipping checkMPI.py, because it is in skipScripts. +################################### +running: checkFlipCell.py +flipCell is working properly (tested on 1000 random flips, 251 of which needed more than one flip for orthogonality) +Status: success, time spent on this check: 0:00:00.105679 +___________________________________ +################################### +running: checkMultiScGeom.py +Status: success, time spent on this check: 0:00:02.054275 +___________________________________ +################################### +running: checkViscElPM2.py +Status: success, time spent on this check: 0:00:00.122580 ___________________________________ ################################### running: checkGravity.py @@ -29443,103 +29301,167 @@ g = Real('-9.81') ## produces: -9.81 g = -9.81 ## produces: -9.81 See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:01.848613 +Status: success, time spent on this check: 0:00:01.807171 +___________________________________ +################################### +running: checkDEM-PFVPressureInjection.py +This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled +Status: success, time spent on this check: 0:00:00.003987 +___________________________________ +################################### +running: checkColliderCorrectness.py +checkColliderCorrectness for InsertionSortCollider +Status: success, time spent on this check: 0:00:00.258199 ___________________________________ ################################### running: checkColliderConstantness.py checkColliderConstantness for InsertionSortCollider -Status: success, time spent on this check: 0:00:00.357070 +Status: success, time spent on this check: 0:00:00.260381 ___________________________________ ################################### -Skipping checkList.py, because it is in skipScripts. +running: checkLubrication.py +Status: success, time spent on this check: 0:00:00.363400 +___________________________________ ################################### -running: checkTestDummy.py -checkTest mechanism -Status: success, time spent on this check: 0:00:00.001808 +running: checkbf_unixial_clump.py +Status: success, time spent on this check: 0:00:02.333175 ___________________________________ ################################### -running: check_TwoPhaseFlowEngine_PressureInjection.py -This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled -Status: success, time spent on this check: 0:00:00.004919 +running: checkSetPerm.py +Status: success, time spent on this check: 0:00:00.042412 ___________________________________ ################################### -running: checkViscElEng.py -Precalculated en value 0.736356797441 -Obtained en value 0.736356797441 -Status: success, time spent on this check: 0:00:00.410626 +running: checkWeight.py +Precalculated weight 756.093387 +Obtained weight 756.093387 +Status: success, time spent on this check: 0:00:00.122868 ___________________________________ ################################### -running: checkKineticEnergy.py -Status: success, time spent on this check: 0:00:01.824282 +running: checkSaveLoadClumps.py +Kinetic energy OK 1.170041E-09 +Kinetic energy OK 1.098011E-01 +Kinetic energy OK 1.098240E-01 +Kinetic energy OK 1.121390E-01 +Status: success, time spent on this check: 0:00:04.787048 ___________________________________ ################################### -running: checkMultiScGeom.py -Status: success, time spent on this check: 0:00:03.169054 +running: checkAvoidSelfInteractionMask.py +testing collider.avoidSelfInteractionMask +0 bb br gg gr rr +1 bb br gr +2 br gg gr +3 br gr +Status: success, time spent on this check: 0:00:00.003904 ___________________________________ ################################### -running: checkSaveLoadClumps.py -Kinetic energy OK 1.168078E-09 -Kinetic energy OK 1.086113E-01 -Kinetic energy OK 1.086330E-01 -Kinetic energy OK 1.108271E-01 -Status: success, time spent on this check: 0:00:05.362014 +Skipping checkMPISilo.py, because it is in slowScripts. +################################### +Skipping checkMPI4PYcomm.py, because it is in skipScripts. +################################### +running: checkPotentialVTKRecorders.py +checking file: /tmp/tmp9_11yhyh/potentialVTKRecorders/ppcontactPoint.10.vtu +checking file: /tmp/tmp9_11yhyh/potentialVTKRecorders/ppId.10.vtu +checking file: /tmp/tmp9_11yhyh/potentialVTKRecorders/pp-pb.10.vtp +checking file: /tmp/tmp9_11yhyh/potentialVTKRecorders/ppvel.10.vtu +non-matching lines: 0 +skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available +Status: success, time spent on this check: 0:00:00.127108 ___________________________________ ################################### -running: checkThermalEngine.py -This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled -Status: success, time spent on this check: 0:00:00.003207 +Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +################################### +running: checkLubricationWithRoughness.py +Status: success, time spent on this check: 0:00:00.363232 +___________________________________ +###################################... +---------------------------------------------------------------------- +Ran 3 tests in 0.064s + +OK + +running: checkLiquidMigration.py +This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled +Status: success, time spent on this check: 0:00:00.002166 ___________________________________ ################################### -running: checkCapillaryModels.py -Status: success, time spent on this check: 0:00:00.043036 +running: checkPotentialBlocks.py +skip PotentialBlocks check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.001744 ___________________________________ ################################### -running: checkTesselationWrapper.py -Status: success, time spent on this check: 0:00:00.027425 +running: checkTestTriax.py +File ./checkTest.yade moved into /tmp/tmpg_r39f59/ directory +File ./_Unloaded_380_3.spheres moved into /tmp/tmpg_r39f59/ directory +File ./_Unloaded_380_3.xml moved into /tmp/tmpg_r39f59/ directory +File ./WallStresses moved into /tmp/tmpg_r39f59/ directory +Status: success, time spent on this check: 0:00:00.164314 +___________________________________ +################################### +Skipping checkList.py, because it is in skipScripts. +################################### +running: checkRotAlgorithmNonSpherical.py +Status: success, time spent on this check: 0:00:05.860013 +___________________________________ +################################### +running: checkAlpha.py +CGAL not in features, skip +Status: success, time spent on this check: 0:00:00.001630 +___________________________________ +################################### +running: checkCapillaryModels.py +Status: success, time spent on this check: 0:00:00.042287 ___________________________________ ################################### running: checkLS_DEM.py LS-DEM distance, volume and surface descriptions as correct as expected LS-DEM contact description as correct as expected Fast Marching Method as correct as expected -Status: success, time spent on this check: 0:00:01.271981 +Status: success, time spent on this check: 0:00:00.935922 ___________________________________ ################################### -running: checkbf_unixial_clump.py -Status: success, time spent on this check: 0:00:03.096336 +running: checkLS_DEM_pbc.py +Periodic boundary conditions for LS-DEM as correct as expected +Status: success, time spent on this check: 0:00:05.265552 ___________________________________ ################################### -running: checkFlipCell.py -flipCell is working properly (tested on 1000 random flips, 275 of which needed more than one flip for orthogonality) -Status: success, time spent on this check: 0:00:00.196908 +running: checkHertzExtended.py +This checkHertzExtended.py cannot be executed because CGAL is disabled +Status: success, time spent on this check: 0:00:00.002469 ___________________________________ ################################### -Skipping checkClumpHopper.py, because it is in slowScripts. -################################### -running: checkLiquidMigration.py -This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled -Status: success, time spent on this check: 0:00:00.002485 +running: checkKineticEnergy.py +Status: success, time spent on this check: 0:00:01.173803 ___________________________________ ################################### -running: checkWeight.py -Precalculated weight 756.093387 -Obtained weight 756.093387 -Status: success, time spent on this check: 0:00:00.163136 +running: checkTesselationWrapper.py +Status: success, time spent on this check: 0:00:00.002038 ___________________________________ ################################### -running: checkbf_simple.py -Status: success, time spent on this check: 0:00:02.061858 +Skipping DEM-PFV-check.py, because it is in skipScripts. +################################### +running: checkWirePM.py +Status: success, time spent on this check: 0:00:01.449299 ___________________________________ ################################### -Skipping colliderTorture.py, because it is in slowScripts. +Skipping checkFlipSpheres.py, because it is in slowScripts. ################################### -Skipping checkPolyhedraCrush.py, because it is in skipScripts. +running: checkThermalEngine.py +This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled +Status: success, time spent on this check: 0:00:00.002391 +___________________________________ ################################### -running: checkPotentialBlocks.py -skip PotentialBlocks check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.003551 +running: checkbf_simple.py +Status: success, time spent on this check: 0:00:01.566997 +___________________________________ +################################### +running: checkVTKRecorder.py +checkVTKRecorder +Check file 10.vtm +Check file 10/10_0.vtu +Check file 10/10_2.vtp +Status: success, time spent on this check: 0:00:00.066868 ___________________________________ -Most time spend on a single check: 0:00:12.307649 +Most time spend on a single check: 0:00:05.860013 *** ALL CHECKS PASSED *** Adding slavesLD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-longdouble --test /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/__init__.py:58: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. @@ -29595,7 +29517,7 @@ testNegativeIndex (yade.TestBodies.testNegativeIndex) Bodies: Negative index counts backwards (like python sequences). ... ok testSaveAllClasses (yade.TestIO.testSaveAllClasses) -I/O: All classes can be saved and loaded with boost::serialization ... Entered the initialization functionEntered the initialization functionWARNING: cannot open files used for capillary law, all forces will be null. Instructions on how to download and install them is found here : https://yade-dem.org/wiki/CapillaryTriaxialTest. +I/O: All classes can be saved and loaded with boost::serialization ... Entered the initialization functionWARNING: cannot open files used for capillary law, all forces will be null. Instructions on how to download and install them is found here : https://yade-dem.org/wiki/CapillaryTriaxialTest. ok testEraseBodiesInInteraction (yade.TestInteractions.testEraseBodiesInInteraction) ... ok testDead (yade.TestLoop.testDead) @@ -29775,10 +29697,11 @@ testMotion (yade.tests.cohesive-chain.TestCohesiveChain.testMotion) CohesiveChain: velocity/positions tested in transient dynamics and equilibrium state ... /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/gridpfacet.py:57: UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead. See examples/grids/CohesiveGridConnectionSphere.py. warnings.warn( - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (1-2), if it is not intentional you may want to check input parameters. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 4-5), check etaRoll and etaTwist of the materials if it is not intentional. Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (0-1), if it is not intentional you may want to check input parameters. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 6-7), check etaRoll and etaTwist of the materials if it is not intentional. Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 2-3), check etaRoll and etaTwist of the materials if it is not intentional. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 3-4), check etaRoll and etaTwist of the materials if it is not intentional. ok testKinematicEngines (yade.TestKinematicEngines.testKinematicEngines) Engines: kinematic engines ... ok @@ -30296,133 +30219,33 @@ testLoadPolyMesh (yade.tests.ymport-foamfiles.TestYmportFoamFiles.testLoadPolyMesh) ... ok ---------------------------------------------------------------------- -Ran 88 tests in 15.642s +Ran 88 tests in 9.004s OK *** ALL TESTS PASSED *** -LD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-longdouble --check +Entered the initialization functionLD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-longdouble --check /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-longdouble/py/yade/__init__.py:58: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) TypeError: No to_python (by-value) converter found for C++ type: yade::math::ThinRealWrapper <WARNING> GravityEngine:24 virtual void yade::GravityEngine::action(): GravityEngine is deprecated, consider using Newton::gravity instead. -... ----------------------------------------------------------------------- -Ran 3 tests in 0.080s - -OK Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] ################################### -running: checkAvoidSelfInteractionMask.py -testing collider.avoidSelfInteractionMask -0 bb br gg gr rr -1 bb br gr -2 br gg gr -3 br gr -Status: success, time spent on this check: 0:00:00.005191 -___________________________________ -################################### -Skipping checkJCFpm.py, because it is in skipScripts. -################################### -running: checkBlockGen.py -skip BlockGen check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.002901 -___________________________________ -################################### -running: checkPotentialParticles.py -Status: success, time spent on this check: 0:00:00.044745 -___________________________________ -################################### -Skipping checkMPI4PYcomm.py, because it is in skipScripts. -################################### -running: checkColliderCorrectness.py -checkColliderCorrectness for InsertionSortCollider -Status: success, time spent on this check: 0:00:01.492058 -___________________________________ -################################### -running: checkAlpha.py -CGAL not in features, skip -Status: success, time spent on this check: 0:00:00.011003 -___________________________________ -################################### -Skipping checkFlipSpheres.py, because it is in slowScripts. -################################### -running: checkLS_DEM_pbc.py -Skip checkLS_DEM_pbc, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002288 -___________________________________ -################################### -running: checkViscElBC.py -Status: success, time spent on this check: 0:00:00.042245 -___________________________________ -################################### -running: checkGravityRungeKuttaCashKarp54.py -checkGravityRungeKuttaCashKarp54.py : yade precision is 18 decimal places. Will use error tolerance of: 1e-15 -Note: for high precision calculations use yade.math.toHP1(...) see this: -g = yade.math.toHP1('-9.81') ## produces: Real("-9.810000000000000000382") -g = -9.81 ## produces: Real("-9.81000000000000049738") -See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:00.204496 -___________________________________ -################################### -running: checkWirePM.py -Status: success, time spent on this check: 0:00:05.588486 -___________________________________ -################################### -running: checkLubricationWithRoughness.py -Status: success, time spent on this check: 0:00:01.647616 -___________________________________ -################################### -running: checkVTKRecorder.py -checkVTKRecorder -Check file 10.vtm -Check file 10/10_0.vtu -Check file 10/10_2.vtp -Status: success, time spent on this check: 0:00:00.084399 -___________________________________ -################################### -running: checkHertzExtended.py -This checkHertzExtended.py cannot be executed because CGAL is disabled -Status: success, time spent on this check: 0:00:00.003192 -___________________________________ -################################### -running: checkSetPerm.py -Status: success, time spent on this check: 0:00:00.042250 -___________________________________ -################################### -running: checkPotentialVTKRecorders.py -checking file: /tmp/tmpz6ja_udv/potentialVTKRecorders/ppcontactPoint.10.vtu -checking file: /tmp/tmpz6ja_udv/potentialVTKRecorders/ppId.10.vtu -checking file: /tmp/tmpz6ja_udv/potentialVTKRecorders/pp-pb.10.vtp -checking file: /tmp/tmpz6ja_udv/potentialVTKRecorders/ppvel.10.vtu -non-matching lines: 0 -skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available -Status: success, time spent on this check: 0:00:00.089527 -___________________________________ -################################### -Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +Skipping colliderTorture.py, because it is in slowScripts. ################################### -running: checkDEM-PFVPressureInjection.py -This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled -Status: success, time spent on this check: 0:00:00.004914 -___________________________________ +Skipping checkMPYcomm.py, because it is in skipScripts. ################################### -running: checkLubrication.py -Status: success, time spent on this check: 0:00:01.647160 +running: checkTestDummy.py +checkTest mechanism +Status: success, time spent on this check: 0:00:00.300870 ___________________________________ ################################### -Skipping checkMPISilo.py, because it is in slowScripts. -################################### -Skipping checkMPI.py, because it is in skipScripts. -################################### -Skipping checkMPYcomm.py, because it is in skipScripts. +Skipping checkClumpHopper.py, because it is in slowScripts. ################################### -running: checkTestTriax.py -File ./checkTest.yade moved into /tmp/tmpsbnmqwsu/ directory -File ./_Unloaded_380_3.spheres moved into /tmp/tmpsbnmqwsu/ directory -File ./_Unloaded_380_3.xml moved into /tmp/tmpsbnmqwsu/ directory -File ./WallStresses moved into /tmp/tmpsbnmqwsu/ directory -Status: success, time spent on this check: 0:00:00.730124 +running: checkViscElEng.py +Precalculated en value 0.736356797441 +Obtained en value 0.736356799196 +Status: success, time spent on this check: 0:00:00.289107 ___________________________________ ################################### running: checkCohesiveFrictionalLaw.py @@ -30448,21 +30271,58 @@ [1.0, 1, Real("98.90000000000002955414"), Real("30.0000000000000006245"), Real("0"), Real("0")] [1.0, 1, Real("98.90000000000002955414"), Real("54.02931624555089791181"), Real("0"), Real("0")] CohesiveFrictional model passed with difference = 4.783398115117064576837e-12 -Status: success, time spent on this check: 0:00:00.535143 +Status: success, time spent on this check: 0:00:00.533410 +___________________________________ +################################### +running: checkViscElBC.py +Status: success, time spent on this check: 0:00:00.042498 +___________________________________ +################################### +running: checkGravityRungeKuttaCashKarp54.py +checkGravityRungeKuttaCashKarp54.py : yade precision is 18 decimal places. Will use error tolerance of: 1e-15 +Note: for high precision calculations use yade.math.toHP1(...) see this: +g = yade.math.toHP1('-9.81') ## produces: Real("-9.810000000000000000382") +g = -9.81 ## produces: Real("-9.81000000000000049738") +See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. +Status: success, time spent on this check: 0:00:00.123333 +___________________________________ +################################### +running: check_TwoPhaseFlowEngine_PressureInjection.py +This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled +Status: success, time spent on this check: 0:00:00.004341 +___________________________________ +################################### +Skipping checkJCFpm.py, because it is in skipScripts. +################################### +running: checkPotentialParticles.py +Status: success, time spent on this check: 0:00:00.043344 ___________________________________ ################################### running: checkViscElPM.py -Status: success, time spent on this check: 0:00:00.044791 +Status: success, time spent on this check: 0:00:00.044332 ___________________________________ ################################### -Skipping DEM-PFV-check.py, because it is in skipScripts. +Skipping checkPolyhedraCrush.py, because it is in skipScripts. ################################### -running: checkViscElPM2.py -Status: success, time spent on this check: 0:00:00.163072 +running: checkBlockGen.py +skip BlockGen check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.002811 ___________________________________ ################################### -running: checkRotAlgorithmNonSpherical.py -Status: success, time spent on this check: 0:00:12.686061 +Skipping checkMPI.py, because it is in skipScripts. +################################### +running: checkFlipCell.py +flipCell is working properly (tested on 1000 random flips, 261 of which needed more than one flip for orthogonality) +Status: success, time spent on this check: 0:00:00.256390 +___________________________________ +################################### +running: checkMultiScGeom.py +Skip checkMultiScGeom, LS-DEM feature not available +Status: success, time spent on this check: 0:00:00.002059 +___________________________________ +################################### +running: checkViscElPM2.py +Status: success, time spent on this check: 0:00:00.122551 ___________________________________ ################################### running: checkGravity.py @@ -30471,104 +30331,167 @@ g = Real('-9.81') ## produces: Real("-9.810000000000000000382") g = -9.81 ## produces: Real("-9.81000000000000049738") See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:02.692084 +Status: success, time spent on this check: 0:00:02.490567 +___________________________________ +################################### +running: checkDEM-PFVPressureInjection.py +This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled +Status: success, time spent on this check: 0:00:00.004076 +___________________________________ +################################### +running: checkColliderCorrectness.py +checkColliderCorrectness for InsertionSortCollider +Status: success, time spent on this check: 0:00:00.701206 ___________________________________ ################################### running: checkColliderConstantness.py checkColliderConstantness for InsertionSortCollider -Status: success, time spent on this check: 0:00:00.932771 +Status: success, time spent on this check: 0:00:00.711867 ___________________________________ ################################### -Skipping checkList.py, because it is in skipScripts. +running: checkLubrication.py +Status: success, time spent on this check: 0:00:01.406355 +___________________________________ ################################### -running: checkTestDummy.py -checkTest mechanism -Status: success, time spent on this check: 0:00:00.001958 +running: checkbf_unixial_clump.py +This is HP, we do not support it! Or architecture is pp64el. Skip +Status: success, time spent on this check: 0:00:00.005916 ___________________________________ ################################### -running: check_TwoPhaseFlowEngine_PressureInjection.py -This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled -Status: success, time spent on this check: 0:00:00.006313 +running: checkSetPerm.py +Status: success, time spent on this check: 0:00:00.042154 ___________________________________ ################################### -running: checkViscElEng.py -Precalculated en value 0.736356797441 -Obtained en value 0.736356799196 -Status: success, time spent on this check: 0:00:00.323400 +running: checkWeight.py +Precalculated weight 756.093387 +Obtained weight 756.093387 +Status: success, time spent on this check: 0:00:00.203729 ___________________________________ ################################### -running: checkKineticEnergy.py -Status: success, time spent on this check: 0:00:05.167523 +running: checkSaveLoadClumps.py +Kinetic energy OK 1.173531E-09 +Kinetic energy OK 1.138803E-01 +Kinetic energy OK 1.138863E-01 +Kinetic energy OK 1.140811E-01 +Status: success, time spent on this check: 0:00:12.457129 ___________________________________ ################################### -running: checkMultiScGeom.py -Skip checkMultiScGeom, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002694 +running: checkAvoidSelfInteractionMask.py +testing collider.avoidSelfInteractionMask +0 bb br gg gr rr +1 bb br gr +2 br gg gr +3 br gr +Status: success, time spent on this check: 0:00:00.003994 ___________________________________ ################################### -running: checkSaveLoadClumps.py -Kinetic energy OK 1.170178E-09 -Kinetic energy OK 1.125937E-01 -Kinetic energy OK 1.126161E-01 -Kinetic energy OK 1.148701E-01 -Status: success, time spent on this check: 0:00:13.876809 +Skipping checkMPISilo.py, because it is in slowScripts. +################################### +Skipping checkMPI4PYcomm.py, because it is in skipScripts. +################################### +running: checkPotentialVTKRecorders.py +checking file: /tmp/tmpzlg04g0h/potentialVTKRecorders/ppcontactPoint.10.vtu +checking file: /tmp/tmpzlg04g0h/potentialVTKRecorders/ppId.10.vtu... +---------------------------------------------------------------------- +Ran 3 tests in 0.055s + +OK + +checking file: /tmp/tmpzlg04g0h/potentialVTKRecorders/pp-pb.10.vtp +checking file: /tmp/tmpzlg04g0h/potentialVTKRecorders/ppvel.10.vtu +non-matching lines: 0 +skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available +Status: success, time spent on this check: 0:00:00.087838 ___________________________________ ################################### -running: checkThermalEngine.py -This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled -Status: success, time spent on this check: 0:00:00.002813 +Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +################################### +running: checkLubricationWithRoughness.py +Status: success, time spent on this check: 0:00:01.326091 ___________________________________ ################################### -running: checkCapillaryModels.py -Status: success, time spent on this check: 0:00:00.043069 +running: checkLiquidMigration.py +This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled +Status: success, time spent on this check: 0:00:00.002043 ___________________________________ ################################### -running: checkTesselationWrapper.py -Status: success, time spent on this check: 0:00:00.002239 +running: checkPotentialBlocks.py +skip PotentialBlocks check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.001824 +___________________________________ +################################### +running: checkTestTriax.py +File ./checkTest.yade moved into /tmp/tmp2csi_ibh/ directory +File ./_Unloaded_380_3.spheres moved into /tmp/tmp2csi_ibh/ directory +File ./_Unloaded_380_3.xml moved into /tmp/tmp2csi_ibh/ directory +File ./WallStresses moved into /tmp/tmp2csi_ibh/ directory +Status: success, time spent on this check: 0:00:00.526014 +___________________________________ +################################### +Skipping checkList.py, because it is in skipScripts. +################################### +running: checkRotAlgorithmNonSpherical.py +Status: success, time spent on this check: 0:00:06.021427 +___________________________________ +################################### +running: checkAlpha.py +CGAL not in features, skip +Status: success, time spent on this check: 0:00:00.004042 +___________________________________ +################################### +running: checkCapillaryModels.py +Status: success, time spent on this check: 0:00:00.044029 ___________________________________ ################################### running: checkLS_DEM.py Skip checkLSdem, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.003330 +Status: success, time spent on this check: 0:00:00.002998 ___________________________________ ################################### -running: checkbf_unixial_clump.py -This is HP, we do not support it! Or architecture is pp64el. Skip -Status: success, time spent on this check: 0:00:00.005646 +running: checkLS_DEM_pbc.py +Skip checkLS_DEM_pbc, LS-DEM feature not available +Status: success, time spent on this check: 0:00:00.001421 ___________________________________ ################################### -running: checkFlipCell.py -flipCell is working properly (tested on 1000 random flips, 273 of which needed more than one flip for orthogonality) -Status: success, time spent on this check: 0:00:00.539514 +running: checkHertzExtended.py +This checkHertzExtended.py cannot be executed because CGAL is disabled +Status: success, time spent on this check: 0:00:00.001585 ___________________________________ ################################### -Skipping checkClumpHopper.py, because it is in slowScripts. +running: checkKineticEnergy.py +Status: success, time spent on this check: 0:00:04.386558 +___________________________________ ################################### -running: checkLiquidMigration.py -This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled -Status: success, time spent on this check: 0:00:00.002731 +running: checkTesselationWrapper.py +Status: success, time spent on this check: 0:00:00.002111 ___________________________________ ################################### -running: checkWeight.py -Precalculated weight 756.093387 -Obtained weight 756.093387 -Status: success, time spent on this check: 0:00:00.284140 +Skipping DEM-PFV-check.py, because it is in skipScripts. +################################### +running: checkWirePM.py +Status: success, time spent on this check: 0:00:05.421613 +___________________________________ +################################### +Skipping checkFlipSpheres.py, because it is in slowScripts. +################################### +running: checkThermalEngine.py +This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled +Status: success, time spent on this check: 0:00:00.002448 ___________________________________ ################################### running: checkbf_simple.py This is HP, we do not support it! Or architecture is pp64el. Skip -Status: success, time spent on this check: 0:00:00.009043 +Status: success, time spent on this check: 0:00:00.005569 ___________________________________ ################################### -Skipping colliderTorture.py, because it is in slowScripts. -################################### -Skipping checkPolyhedraCrush.py, because it is in skipScripts. -################################### -running: checkPotentialBlocks.py -skip PotentialBlocks check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.003720 +running: checkVTKRecorder.py +checkVTKRecorder +Check file 10.vtm +Check file 10/10_0.vtu +Check file 10/10_2.vtp +Status: success, time spent on this check: 0:00:00.057677 ___________________________________ -Most time spend on a single check: 0:00:13.876809 +Most time spend on a single check: 0:00:12.457129 *** ALL CHECKS PASSED *** Adding slavesLD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-float128 --test /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/__init__.py:58: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. @@ -30805,11 +30728,9 @@ CohesiveChain: velocity/positions tested in transient dynamics and equilibrium state ... /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-float128/py/yade/gridpfacet.py:57: UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead. See examples/grids/CohesiveGridConnectionSphere.py. warnings.warn( Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (0-1), if it is not intentional you may want to check input parameters. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 1-2), check etaRoll and etaTwist of the materials if it is not intentional. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 3-4), check etaRoll and etaTwist of the materials if it is not intentional. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 2-3), check etaRoll and etaTwist of the materials if it is not intentional. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 2-3), check etaRoll and etaTwist of the materials if it is not intentional. Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 4-5), check etaRoll and etaTwist of the materials if it is not intentional. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). ok testKinematicEngines (yade.TestKinematicEngines.testKinematicEngines) Engines: kinematic engines ... ok @@ -31345,7 +31266,7 @@ testLoadPolyMesh (yade.tests.ymport-foamfiles.TestYmportFoamFiles.testLoadPolyMesh) ... ok ---------------------------------------------------------------------- -Ran 88 tests in 18.532s +Ran 88 tests in 12.532s OK *** ALL TESTS PASSED *** @@ -31354,124 +31275,24 @@ boot.initialize(plugins,config.confDir) TypeError: No to_python (by-value) converter found for C++ type: boost::multiprecision::number <WARNING> GravityEngine:24 virtual void yade::GravityEngine::action(): GravityEngine is deprecated, consider using Newton::gravity instead. -... ----------------------------------------------------------------------- -Ran 3 tests in 0.101s - -OK Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] ################################### -running: checkAvoidSelfInteractionMask.py -testing collider.avoidSelfInteractionMask -0 bb br gg gr rr -1 bb br gr -2 br gg gr -3 br gr -Status: success, time spent on this check: 0:00:00.005203 -___________________________________ -################################### -Skipping checkJCFpm.py, because it is in skipScripts. -################################### -running: checkBlockGen.py -skip BlockGen check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.002771 -___________________________________ -################################### -running: checkPotentialParticles.py -Status: success, time spent on this check: 0:00:00.204696 -___________________________________ -################################### -Skipping checkMPI4PYcomm.py, because it is in skipScripts. -################################### -running: checkColliderCorrectness.py -checkColliderCorrectness for InsertionSortCollider -Status: success, time spent on this check: 0:00:08.116992 -___________________________________ -################################### -running: checkAlpha.py -CGAL not in features, skip -Status: success, time spent on this check: 0:00:00.009595 -___________________________________ -################################### -Skipping checkFlipSpheres.py, because it is in slowScripts. -################################### -running: checkLS_DEM_pbc.py -Skip checkLS_DEM_pbc, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002344 -___________________________________ -################################### -running: checkViscElBC.py -Status: success, time spent on this check: 0:00:00.082156 -___________________________________ -################################### -running: checkGravityRungeKuttaCashKarp54.py -checkGravityRungeKuttaCashKarp54.py : yade precision is 33 decimal places. Will use error tolerance of: 1e-30 -Note: for high precision calculations use yade.math.toHP1(...) see this: -g = yade.math.toHP1('-9.81') ## produces: Real("-9.810000000000000000000000000000000431") -g = -9.81 ## produces: Real("-9.81000000000000049737991503207013011") -See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:00.364811 -___________________________________ -################################### -running: checkWirePM.py -Status: success, time spent on this check: 0:00:51.177579 -___________________________________ -################################### -running: checkLubricationWithRoughness.py -Status: success, time spent on this check: 0:00:15.045373 -___________________________________ -################################### -running: checkVTKRecorder.py -checkVTKRecorder -Check file 10.vtm -Check file 10/10_0.vtu -Check file 10/10_2.vtp -Status: success, time spent on this check: 0:00:00.105182 -___________________________________ -################################### -running: checkHertzExtended.py -This checkHertzExtended.py cannot be executed because CGAL is disabled -Status: success, time spent on this check: 0:00:00.002864 -___________________________________ -################################### -running: checkSetPerm.py -Status: success, time spent on this check: 0:00:00.122242 -___________________________________ -################################### -running: checkPotentialVTKRecorders.py -checking file: /tmp/tmpvnxla9dj/potentialVTKRecorders/ppcontactPoint.10.vtu -checking file: /tmp/tmpvnxla9dj/potentialVTKRecorders/ppId.10.vtu -checking file: /tmp/tmpvnxla9dj/potentialVTKRecorders/pp-pb.10.vtp -checking file: /tmp/tmpvnxla9dj/potentialVTKRecorders/ppvel.10.vtu -non-matching lines: 0 -skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available -Status: success, time spent on this check: 0:00:00.411860 -___________________________________ -################################### -Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +Skipping colliderTorture.py, because it is in slowScripts. ################################### -running: checkDEM-PFVPressureInjection.py -This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled -Status: success, time spent on this check: 0:00:00.005635 -___________________________________ +Skipping checkMPYcomm.py, because it is in skipScripts. ################################### -running: checkLubrication.py -Status: success, time spent on this check: 0:00:15.007909 +running: checkTestDummy.py +checkTest mechanism +Status: success, time spent on this check: 0:00:00.296160 ___________________________________ ################################### -Skipping checkMPISilo.py, because it is in slowScripts. -################################### -Skipping checkMPI.py, because it is in skipScripts. -################################### -Skipping checkMPYcomm.py, because it is in skipScripts. +Skipping checkClumpHopper.py, because it is in slowScripts. ################################### -running: checkTestTriax.py -File ./checkTest.yade moved into /tmp/tmp81uf53ak/ directory -File ./_Unloaded_380_3.spheres moved into /tmp/tmp81uf53ak/ directory -File ./_Unloaded_380_3.xml moved into /tmp/tmp81uf53ak/ directory -File ./WallStresses moved into /tmp/tmp81uf53ak/ directory -Status: success, time spent on this check: 0:00:05.828928 +running: checkViscElEng.py +Precalculated en value 0.736356797441 +Obtained en value 0.736356799196 +Status: success, time spent on this check: 0:00:00.612000 ___________________________________ ################################### running: checkCohesiveFrictionalLaw.py @@ -31497,21 +31318,58 @@ [1.0, 1, Real("98.90000000000002955413691552166710608"), Real("30.00000000000000062450045135165055399"), Real("0"), Real("0")] [1.0, 1, Real("98.90000000000002955413691552166710608"), Real("54.02931624555089790643583129944005295"), Real("0"), Real("0")] CohesiveFrictional model passed with difference = 4.783397264752931606992655827302155451e-12 -Status: success, time spent on this check: 0:00:00.535553 +Status: success, time spent on this check: 0:00:00.532353 +___________________________________ +################################### +running: checkViscElBC.py +Status: success, time spent on this check: 0:00:00.082736 +___________________________________ +################################### +running: checkGravityRungeKuttaCashKarp54.py +checkGravityRungeKuttaCashKarp54.py : yade precision is 33 decimal places. Will use error tolerance of: 1e-30 +Note: for high precision calculations use yade.math.toHP1(...) see this: +g = yade.math.toHP1('-9.81') ## produces: Real("-9.810000000000000000000000000000000431") +g = -9.81 ## produces: Real("-9.81000000000000049737991503207013011") +See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. +Status: success, time spent on this check: 0:00:00.283792 +___________________________________ +################################### +running: check_TwoPhaseFlowEngine_PressureInjection.py +This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled +Status: success, time spent on this check: 0:00:00.004498 +___________________________________ +################################### +Skipping checkJCFpm.py, because it is in skipScripts. +################################### +running: checkPotentialParticles.py +Status: success, time spent on this check: 0:00:00.163684 ___________________________________ ################################### running: checkViscElPM.py -Status: success, time spent on this check: 0:00:00.085262 +Status: success, time spent on this check: 0:00:00.084544 ___________________________________ ################################### -Skipping DEM-PFV-check.py, because it is in skipScripts. +Skipping checkPolyhedraCrush.py, because it is in skipScripts. ################################### -running: checkViscElPM2.py -Status: success, time spent on this check: 0:00:00.404458 +running: checkBlockGen.py +skip BlockGen check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.002753 ___________________________________ ################################### -running: checkRotAlgorithmNonSpherical.py -Status: success, time spent on this check: 0:00:19.029934 +Skipping checkMPI.py, because it is in skipScripts. +################################### +running: checkFlipCell.py +flipCell is working properly (tested on 1000 random flips, 259 of which needed more than one flip for orthogonality) +Status: success, time spent on this check: 0:00:00.278656 +___________________________________ +################################### +running: checkMultiScGeom.py +Skip checkMultiScGeom, LS-DEM feature not available +Status: success, time spent on this check: 0:00:00.002140 +___________________________________ +################################### +running: checkViscElPM2.py +Status: success, time spent on this check: 0:00:00.363081 ___________________________________ ################################### running: checkGravity.py @@ -31520,105 +31378,168 @@ g = Real('-9.81') ## produces: Real("-9.810000000000000000000000000000000431") g = -9.81 ## produces: Real("-9.81000000000000049737991503207013011") See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:09.232828 +Status: success, time spent on this check: 0:00:08.545768 +___________________________________ +################################### +running: checkDEM-PFVPressureInjection.py +This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled +Status: success, time spent on this check: 0:00:00.004069 +___________________________________ +################################### +running: checkColliderCorrectness.py +checkColliderCorrectness for InsertionSortCollider +Status: success, time spent on this check: 0:00:06.117552 ___________________________________ ################################### running: checkColliderConstantness.py checkColliderConstantness for InsertionSortCollider -Status: success, time spent on this check: 0:00:07.392515 +Status: success, time spent on this check: 0:00:06.004883 ___________________________________ ################################### -Skipping checkList.py, because it is in skipScripts. +running: checkLubrication.py +Status: success, time spent on this check: 0:00:15.283937 +___________________________________ ################################### -running: checkTestDummy.py -checkTest mechanism -Status: success, time spent on this check: 0:00:00.001886 +running: checkbf_unixial_clump.py +This is HP, we do not support it! Or architecture is pp64el. Skip +Status: success, time spent on this check: 0:00:00.007056 ___________________________________ ################################### -running: check_TwoPhaseFlowEngine_PressureInjection.py -This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled -Status: success, time spent on this check: 0:00:00.006104 +running: checkSetPerm.py +Status: success, time spent on this check: 0:00:00.122234 ___________________________________ ################################### -running: checkViscElEng.py -Precalculated en value 0.736356797441 -Obtained en value 0.736356799196 -Status: success, time spent on this check: 0:00:00.845028 +running: checkWeight.py +Precalculated weight 756.093387 +Obtained weight 756.093387 +Status: success, time spent on this check: 0:00:00.724774 ___________________________________ ################################### -running: checkKineticEnergy.py -Status: success, time spent on this check: 0:00:41.892325 +running: checkSaveLoadClumps.py +Kinetic energy OK 1.170594E-09 +Kinetic energy OK 1.113170E-01 +Kinetic energy OK 1.113393E-01 +Kinetic energy OK 1.135768E-01 +Status: success, time spent on this check: 0:01:26.730892 ___________________________________ ################################### -running: checkMultiScGeom.py -Skip checkMultiScGeom, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002418 +running: checkAvoidSelfInteractionMask.py +testing collider.avoidSelfInteractionMask +0 bb br gg gr rr +1 bb br gr +2 br gg gr +3 br gr +Status: success, time spent on this check: 0:00:00.004278 ___________________________________ +###################################... +---------------------------------------------------------------------- +Ran 3 tests in 0.057s + +OK + +Skipping checkMPISilo.py, because it is in slowScripts. ################################### -running: checkSaveLoadClumps.py -Kinetic energy OK 1.167830E-09 -Kinetic energy OK 1.111516E-01 -Kinetic energy OK 1.111737E-01 -Kinetic energy OK 1.134026E-01 -Status: success, time spent on this check: 0:01:30.007961 +Skipping checkMPI4PYcomm.py, because it is in skipScripts. +################################### +running: checkPotentialVTKRecorders.py +checking file: /tmp/tmpc450cx6p/potentialVTKRecorders/ppcontactPoint.10.vtu +checking file: /tmp/tmpc450cx6p/potentialVTKRecorders/ppId.10.vtu +checking file: /tmp/tmpc450cx6p/potentialVTKRecorders/pp-pb.10.vtp +checking file: /tmp/tmpc450cx6p/potentialVTKRecorders/ppvel.10.vtu +non-matching lines: 0 +skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available +Status: success, time spent on this check: 0:00:00.328769 ___________________________________ ################################### -running: checkThermalEngine.py -This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled -Status: success, time spent on this check: 0:00:00.002629 +Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +################################### +running: checkLubricationWithRoughness.py +Status: success, time spent on this check: 0:00:15.364516 ___________________________________ ################################### -running: checkCapillaryModels.py -Status: success, time spent on this check: 0:00:00.042670 +running: checkLiquidMigration.py +This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled +Status: success, time spent on this check: 0:00:00.002144 ___________________________________ ################################### -running: checkTesselationWrapper.py -Status: success, time spent on this check: 0:00:00.001843 +running: checkPotentialBlocks.py +skip PotentialBlocks check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.002085 +___________________________________ +################################### +running: checkTestTriax.py +File ./checkTest.yade moved into /tmp/tmplwo3tjdk/ directory +File ./_Unloaded_380_3.spheres moved into /tmp/tmplwo3tjdk/ directory +File ./_Unloaded_380_3.xml moved into /tmp/tmplwo3tjdk/ directory +File ./WallStresses moved into /tmp/tmplwo3tjdk/ directory +Status: success, time spent on this check: 0:00:06.426943 +___________________________________ +################################### +Skipping checkList.py, because it is in skipScripts. +################################### +running: checkRotAlgorithmNonSpherical.py +Status: success, time spent on this check: 0:00:08.588752 +___________________________________ +################################### +running: checkAlpha.py +CGAL not in features, skip +Status: success, time spent on this check: 0:00:00.001756 +___________________________________ +################################### +running: checkCapillaryModels.py +Status: success, time spent on this check: 0:00:00.042740 ___________________________________ ################################### running: checkLS_DEM.py Skip checkLSdem, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002942 +Status: success, time spent on this check: 0:00:00.002949 ___________________________________ ################################### -running: checkbf_unixial_clump.py -This is HP, we do not support it! Or architecture is pp64el. Skip -Status: success, time spent on this check: 0:00:00.007143 +running: checkLS_DEM_pbc.py +Skip checkLS_DEM_pbc, LS-DEM feature not available +Status: success, time spent on this check: 0:00:00.001607 ___________________________________ ################################### -running: checkFlipCell.py -flipCell is working properly (tested on 1000 random flips, 279 of which needed more than one flip for orthogonality) -Status: success, time spent on this check: 0:00:00.520702 +running: checkHertzExtended.py +This checkHertzExtended.py cannot be executed because CGAL is disabled +Status: success, time spent on this check: 0:00:00.001707 ___________________________________ ################################### -Skipping checkClumpHopper.py, because it is in slowScripts. +running: checkKineticEnergy.py +Status: success, time spent on this check: 0:00:38.097825 +___________________________________ ################################### -running: checkLiquidMigration.py -This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled -Status: success, time spent on this check: 0:00:00.002371 +running: checkTesselationWrapper.py +Status: success, time spent on this check: 0:00:00.002125 ___________________________________ ################################### -running: checkWeight.py -Precalculated weight 756.093387 -Obtained weight 756.093387 -Status: success, time spent on this check: 0:00:00.885595 +Skipping DEM-PFV-check.py, because it is in skipScripts. +################################### +running: checkWirePM.py +Status: success, time spent on this check: 0:00:43.606539 +___________________________________ +################################### +Skipping checkFlipSpheres.py, because it is in slowScripts. +################################### +running: checkThermalEngine.py +This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled +Status: success, time spent on this check: 0:00:00.002522 ___________________________________ ################################### running: checkbf_simple.py This is HP, we do not support it! Or architecture is pp64el. Skip -Status: success, time spent on this check: 0:00:00.048233 +Status: success, time spent on this check: 0:00:00.038537 ___________________________________ ################################### -Skipping colliderTorture.py, because it is in slowScripts. -################################### -Skipping checkPolyhedraCrush.py, because it is in skipScripts. -################################### -running: checkPotentialBlocks.py -skip PotentialBlocks check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.002819 +running: checkVTKRecorder.py +checkVTKRecorder +Check file 10.vtm +Check file 10/10_0.vtu +Check file 10/10_2.vtp +Status: success, time spent on this check: 0:00:00.060540 ___________________________________ WARNING: some checks took longer than 30 seconds. -Most time spend on a single check: 0:01:30.007961 +Most time spend on a single check: 0:01:26.730892 *** ALL CHECKS PASSED *** Adding slavesLD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-mpfr150 --test /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/__init__.py:58: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. @@ -31674,7 +31595,7 @@ testNegativeIndex (yade.TestBodies.testNegativeIndex) Bodies: Negative index counts backwards (like python sequences). ... ok testSaveAllClasses (yade.TestIO.testSaveAllClasses) -I/O: All classes can be saved and loaded with boost::serialization ... Entered the initialization functionWARNING: cannot open files used for capillary law, all forces will be null. Instructions on how to download and install them is found here : https://yade-dem.org/wiki/CapillaryTriaxialTest. +I/O: All classes can be saved and loaded with boost::serialization ... Entered the initialization functionEntered the initialization functionWARNING: cannot open files used for capillary law, all forces will be null. Instructions on how to download and install them is found here : https://yade-dem.org/wiki/CapillaryTriaxialTest. ok testEraseBodiesInInteraction (yade.TestInteractions.testEraseBodiesInInteraction) ... ok testDead (yade.TestLoop.testDead) @@ -31854,13 +31775,11 @@ testMotion (yade.tests.cohesive-chain.TestCohesiveChain.testMotion) CohesiveChain: velocity/positions tested in transient dynamics and equilibrium state ... /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/gridpfacet.py:57: UserWarning: chainedCylinder is deprecated and will be removed in the future, use GridConnection instead. See examples/grids/CohesiveGridConnectionSphere.py. warnings.warn( - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (3-4), if it is not intentional you may want to check input parameters. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (1-2), if it is not intentional you may want to check input parameters. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 5-6), check etaRoll and etaTwist of the materials if it is not intentional. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (4-5), if it is not intentional you may want to check input parameters. - Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 0-1), check etaRoll and etaTwist of the materials if it is not intentional. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:280 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: the max shear force includes some adhesion/cohesion but the rolling moment does not (because it is either purely elastic or purely frictional) for interaction (0-1), if it is not intentional you may want to check input parameters. Law2_ScGeom6D_CohFrictPhys_CohesionMoment:293 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: If :yref:`Law2_ScGeom6D_CohFrictPhys_CohesionMoment::useIncrementalForm` is false, then plasticity will not be applied correctly to torques (the total formulation will not reproduce irreversibility). + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 4-5), check etaRoll and etaTwist of the materials if it is not intentional. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:285 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: rolling moment is bounded but twisting moment is not (interaction 3-4), check etaRoll and etaTwist of the materials if it is not intentional. + Law2_ScGeom6D_CohFrictPhys_CohesionMoment:289 void yade::Law2_ScGeom6D_CohFrictPhys_CohesionMoment::checkConsistency(boost::shared_ptr, yade::Body::id_t, yade::Body::id_t) const: twisting moment is bounded but rolling moment is not (interaction 2-3), check etaRoll and etaTwist of the materials if it is not intentional. ok testKinematicEngines (yade.TestKinematicEngines.testKinematicEngines) Engines: kinematic engines ... ok @@ -32373,133 +32292,33 @@ testLoadPolyMesh (yade.tests.ymport-foamfiles.TestYmportFoamFiles.testLoadPolyMesh) ... ok ---------------------------------------------------------------------- -Ran 88 tests in 78.755s +Ran 88 tests in 59.380s OK *** ALL TESTS PASSED *** -Entered the initialization functionLD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-mpfr150 --check +LD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/qt: /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-mpfr150 --check /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-mpfr150/py/yade/__init__.py:58: RuntimeWarning: to-Python converter for boost::shared_ptr already registered; second conversion method ignored. boot.initialize(plugins,config.confDir) TypeError: No to_python (by-value) converter found for C++ type: boost::multiprecision::number, (boost::multiprecision::expression_template_option)0> <WARNING> GravityEngine:24 virtual void yade::GravityEngine::action(): GravityEngine is deprecated, consider using Newton::gravity instead. -... ----------------------------------------------------------------------- -Ran 3 tests in 0.234s - -OK Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] ################################### -running: checkAvoidSelfInteractionMask.py -testing collider.avoidSelfInteractionMask -0 bb br gg gr rr -1 bb br gr -2 br gg gr -3 br gr -Status: success, time spent on this check: 0:00:00.006789 -___________________________________ -################################### -Skipping checkJCFpm.py, because it is in skipScripts. -################################### -running: checkBlockGen.py -skip BlockGen check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.002797 -___________________________________ -################################### -running: checkPotentialParticles.py -Status: success, time spent on this check: 0:00:00.847438 -___________________________________ -################################### -Skipping checkMPI4PYcomm.py, because it is in skipScripts. -################################### -running: checkColliderCorrectness.py -checkColliderCorrectness for InsertionSortCollider -Status: success, time spent on this check: 0:00:35.868096 -___________________________________ -################################### -running: checkAlpha.py -CGAL not in features, skip -Status: success, time spent on this check: 0:00:00.010306 -___________________________________ -################################### -Skipping checkFlipSpheres.py, because it is in slowScripts. -################################### -running: checkLS_DEM_pbc.py -Skip checkLS_DEM_pbc, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002210 -___________________________________ -################################### -running: checkViscElBC.py -Status: success, time spent on this check: 0:00:00.243130 -___________________________________ -################################### -running: checkGravityRungeKuttaCashKarp54.py -checkGravityRungeKuttaCashKarp54.py : yade precision is 150 decimal places. Will use error tolerance of: 1e-147 -Note: for high precision calculations use yade.math.toHP1(...) see this: -g = yade.math.toHP1('-9.81') ## produces: Real("-9.809999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999218") -g = -9.81 ## produces: Real("-9.8100000000000004973799150320701301097869873046875") -See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:05.822236 -___________________________________ -################################### -running: checkWirePM.py -Status: success, time spent on this check: 0:04:05.384752 -___________________________________ -################################### -running: checkLubricationWithRoughness.py -Status: success, time spent on this check: 0:01:29.604328 -___________________________________ -################################### -running: checkVTKRecorder.py -checkVTKRecorder -Check file 10.vtm -Check file 10/10_0.vtu -Check file 10/10_2.vtp -Status: success, time spent on this check: 0:00:00.239187 -___________________________________ -################################### -running: checkHertzExtended.py -This checkHertzExtended.py cannot be executed because CGAL is disabled -Status: success, time spent on this check: 0:00:00.003104 -___________________________________ -################################### -running: checkSetPerm.py -Status: success, time spent on this check: 0:00:00.523144 -___________________________________ -################################### -running: checkPotentialVTKRecorders.py -checking file: /tmp/tmp5bvg228b/potentialVTKRecorders/ppcontactPoint.10.vtu -checking file: /tmp/tmp5bvg228b/potentialVTKRecorders/ppId.10.vtu -checking file: /tmp/tmp5bvg228b/potentialVTKRecorders/pp-pb.10.vtp -checking file: /tmp/tmp5bvg228b/potentialVTKRecorders/ppvel.10.vtu -non-matching lines: 0 -skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available -Status: success, time spent on this check: 0:00:01.816047 -___________________________________ -################################### -Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +Skipping colliderTorture.py, because it is in slowScripts. ################################### -running: checkDEM-PFVPressureInjection.py -This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled -Status: success, time spent on this check: 0:00:00.004761 -___________________________________ +Skipping checkMPYcomm.py, because it is in skipScripts. ################################### -running: checkLubrication.py -Status: success, time spent on this check: 0:01:20.271923 +running: checkTestDummy.py +checkTest mechanism +Status: success, time spent on this check: 0:00:00.292426 ___________________________________ ################################### -Skipping checkMPISilo.py, because it is in slowScripts. -################################### -Skipping checkMPI.py, because it is in skipScripts. -################################### -Skipping checkMPYcomm.py, because it is in skipScripts. +Skipping checkClumpHopper.py, because it is in slowScripts. ################################### -running: checkTestTriax.py -File ./checkTest.yade moved into /tmp/tmpmnu2ukcu/ directory -File ./_Unloaded_380_3.spheres moved into /tmp/tmpmnu2ukcu/ directory -File ./_Unloaded_380_3.xml moved into /tmp/tmpmnu2ukcu/ directory -File ./WallStresses moved into /tmp/tmpmnu2ukcu/ directory -Status: success, time spent on this check: 0:00:27.117254 +running: checkViscElEng.py +Precalculated en value 0.736356797441 +Obtained en value 0.736356799196 +Status: success, time spent on this check: 0:00:02.133756 ___________________________________ ################################### running: checkCohesiveFrictionalLaw.py @@ -32525,21 +32344,58 @@ [1.0, 1, Real("98.90000000000002955413691552166710607707500457763671875"), Real("30.00000000000000062450045135165055398829281330108642578125"), Real("0"), Real("0")] [1.0, 1, Real("98.90000000000002955413691552166710607707500457763671875"), Real("54.02931624555089790643583129944005464933498571846148228158123079985160788827391794768821198498950806841674432825707487120200755245939536893304906391835127"), Real("0"), Real("0")] CohesiveFrictional model passed with difference = 4.783397264752931606992924183794381427636326790182842702689505129403089216445615237251247547806992664870162478863905091363923930362774392223574774447180709e-12 -Status: success, time spent on this check: 0:00:00.535923 +Status: success, time spent on this check: 0:00:00.535221 +___________________________________ +################################### +running: checkViscElBC.py +Status: success, time spent on this check: 0:00:00.162989 +___________________________________ +################################### +running: checkGravityRungeKuttaCashKarp54.py +checkGravityRungeKuttaCashKarp54.py : yade precision is 150 decimal places. Will use error tolerance of: 1e-147 +Note: for high precision calculations use yade.math.toHP1(...) see this: +g = yade.math.toHP1('-9.81') ## produces: Real("-9.809999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999218") +g = -9.81 ## produces: Real("-9.8100000000000004973799150320701301097869873046875") +See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. +Status: success, time spent on this check: 0:00:04.776012 +___________________________________ +################################### +running: check_TwoPhaseFlowEngine_PressureInjection.py +This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled +Status: success, time spent on this check: 0:00:00.004117 +___________________________________ +################################### +Skipping checkJCFpm.py, because it is in skipScripts. +################################### +running: checkPotentialParticles.py +Status: success, time spent on this check: 0:00:00.644586 ___________________________________ ################################### running: checkViscElPM.py -Status: success, time spent on this check: 0:00:00.406877 +Status: success, time spent on this check: 0:00:00.285305 ___________________________________ ################################### -Skipping DEM-PFV-check.py, because it is in skipScripts. +Skipping checkPolyhedraCrush.py, because it is in skipScripts. ################################### -running: checkViscElPM2.py -Status: success, time spent on this check: 0:00:01.568764 +running: checkBlockGen.py +skip BlockGen check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.003279 ___________________________________ ################################### -running: checkRotAlgorithmNonSpherical.py -Status: success, time spent on this check: 0:00:31.589091 +Skipping checkMPI.py, because it is in skipScripts. +################################### +running: checkFlipCell.py +flipCell is working properly (tested on 1000 random flips, 268 of which needed more than one flip for orthogonality) +Status: success, time spent on this check: 0:00:00.453967 +___________________________________ +################################### +running: checkMultiScGeom.py +Skip checkMultiScGeom, LS-DEM feature not available +Status: success, time spent on this check: 0:00:00.001958 +___________________________________ +################################### +running: checkViscElPM2.py +Status: success, time spent on this check: 0:00:01.124821 ___________________________________ ################################### running: checkGravity.py @@ -32548,105 +32404,168 @@ g = Real('-9.81') ## produces: Real("-9.809999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999999218") g = -9.81 ## produces: Real("-9.8100000000000004973799150320701301097869873046875") See https://yade-dem.org/doc/HighPrecisionReal.html#string-conversions for more info. -Status: success, time spent on this check: 0:00:33.340628 +Status: success, time spent on this check: 0:00:30.403097 +___________________________________ +################################### +running: checkDEM-PFVPressureInjection.py +This checkDEM-PFVPressureInjection.py cannot be executed because PFVFLOW is disabled +Status: success, time spent on this check: 0:00:00.004163 +___________________________________ +################################### +running: checkColliderCorrectness.py +checkColliderCorrectness for InsertionSortCollider +Status: success, time spent on this check: 0:00:30.356578 ___________________________________ ################################### running: checkColliderConstantness.py checkColliderConstantness for InsertionSortCollider -Status: success, time spent on this check: 0:00:35.095587 +Status: success, time spent on this check: 0:00:30.171231 ___________________________________ ################################### -Skipping checkList.py, because it is in skipScripts. +running: checkLubrication.py +Status: success, time spent on this check: 0:01:12.722122 +___________________________________ ################################### -running: checkTestDummy.py -checkTest mechanism -Status: success, time spent on this check: 0:00:00.001781 +running: checkbf_unixial_clump.py +This is HP, we do not support it! Or architecture is pp64el. Skip +Status: success, time spent on this check: 0:00:00.015449 ___________________________________ ################################### -running: check_TwoPhaseFlowEngine_PressureInjection.py -This check_TwoPhaseFlowEngine_PressureInjection.py cannot be executed because TWOPHASEFLOW or PFVFLOW are disabled -Status: success, time spent on this check: 0:00:00.006090 +running: checkSetPerm.py +Status: success, time spent on this check: 0:00:00.323107 +___________________________________ +###################################... +---------------------------------------------------------------------- +Ran 3 tests in 0.143s + +OK + +running: checkWeight.py +Precalculated weight 756.093387 +Obtained weight 756.093387 +Status: success, time spent on this check: 0:00:04.539544 ___________________________________ ################################### -running: checkViscElEng.py -Precalculated en value 0.736356797441 -Obtained en value 0.736356799196 -Status: success, time spent on this check: 0:00:03.293244 +running: checkSaveLoadClumps.py +Kinetic energy OK 1.170195E-09 +Kinetic energy OK 1.155605E-01 +Kinetic energy OK 1.155836E-01 +Kinetic energy OK 1.179064E-01 +Status: success, time spent on this check: 0:06:28.731003 ___________________________________ ################################### -running: checkKineticEnergy.py -Status: success, time spent on this check: 0:04:05.955970 +running: checkAvoidSelfInteractionMask.py +testing collider.avoidSelfInteractionMask +0 bb br gg gr rr +1 bb br gr +2 br gg gr +3 br gr +Status: success, time spent on this check: 0:00:00.005321 ___________________________________ ################################### -running: checkMultiScGeom.py -Skip checkMultiScGeom, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002386 +Skipping checkMPISilo.py, because it is in slowScripts. +################################### +Skipping checkMPI4PYcomm.py, because it is in skipScripts. +################################### +running: checkPotentialVTKRecorders.py +checking file: /tmp/tmpmidhllte/potentialVTKRecorders/ppcontactPoint.10.vtu +checking file: /tmp/tmpmidhllte/potentialVTKRecorders/ppId.10.vtu +checking file: /tmp/tmpmidhllte/potentialVTKRecorders/pp-pb.10.vtp +checking file: /tmp/tmpmidhllte/potentialVTKRecorders/ppvel.10.vtu +non-matching lines: 0 +skip PotentialBlockVTKRecorder check, PotentialBlocks or VTK not available +Status: success, time spent on this check: 0:00:01.370959 ___________________________________ ################################### -running: checkSaveLoadClumps.py -Kinetic energy OK 1.169383E-09 -Kinetic energy OK 1.041220E-01 -Kinetic energy OK 1.041423E-01 -Kinetic energy OK 1.062240E-01 -Status: success, time spent on this check: 0:08:03.044253 +Skipping checkCapillaryEngineStandalone.py, because it is in skipScripts. +################################### +running: checkLubricationWithRoughness.py +Status: success, time spent on this check: 0:01:12.670757 ___________________________________ ################################### -running: checkThermalEngine.py -This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled -Status: success, time spent on this check: 0:00:00.002780 +running: checkLiquidMigration.py +This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled +Status: success, time spent on this check: 0:00:00.002035 ___________________________________ ################################### -running: checkCapillaryModels.py -Status: success, time spent on this check: 0:00:00.163734 +running: checkPotentialBlocks.py +skip PotentialBlocks check, PotentialBlocks not available +Status: success, time spent on this check: 0:00:00.001941 ___________________________________ ################################### -running: checkTesselationWrapper.py -Status: success, time spent on this check: 0:00:00.002370 +running: checkTestTriax.py +File ./checkTest.yade moved into /tmp/tmpyq9w1wu_/ directory +File ./_Unloaded_380_3.spheres moved into /tmp/tmpyq9w1wu_/ directory +File ./_Unloaded_380_3.xml moved into /tmp/tmpyq9w1wu_/ directory +File ./WallStresses moved into /tmp/tmpyq9w1wu_/ directory +Status: success, time spent on this check: 0:00:24.412700 +___________________________________ +################################### +Skipping checkList.py, because it is in skipScripts. +################################### +running: checkRotAlgorithmNonSpherical.py +Status: success, time spent on this check: 0:00:23.552239 +___________________________________ +################################### +running: checkAlpha.py +CGAL not in features, skip +Status: success, time spent on this check: 0:00:00.001738 +___________________________________ +################################### +running: checkCapillaryModels.py +Status: success, time spent on this check: 0:00:00.122765 ___________________________________ ################################### running: checkLS_DEM.py Skip checkLSdem, LS-DEM feature not available -Status: success, time spent on this check: 0:00:00.002770 +Status: success, time spent on this check: 0:00:00.003150 ___________________________________ ################################### -running: checkbf_unixial_clump.py -This is HP, we do not support it! Or architecture is pp64el. Skip -Status: success, time spent on this check: 0:00:00.016803 +running: checkLS_DEM_pbc.py +Skip checkLS_DEM_pbc, LS-DEM feature not available +Status: success, time spent on this check: 0:00:00.001553 ___________________________________ ################################### -running: checkFlipCell.py -flipCell is working properly (tested on 1000 random flips, 276 of which needed more than one flip for orthogonality) -Status: success, time spent on this check: 0:00:00.833678 +running: checkHertzExtended.py +This checkHertzExtended.py cannot be executed because CGAL is disabled +Status: success, time spent on this check: 0:00:00.001733 ___________________________________ ################################### -Skipping checkClumpHopper.py, because it is in slowScripts. +running: checkKineticEnergy.py +Status: success, time spent on this check: 0:03:30.704412 +___________________________________ ################################### -running: checkLiquidMigration.py -This checkLiquidMigration.py cannot be executed because LIQMIGRATION is disabled -Status: success, time spent on this check: 0:00:00.002435 +running: checkTesselationWrapper.py +Status: success, time spent on this check: 0:00:00.001957 ___________________________________ ################################### -running: checkWeight.py -Precalculated weight 756.093387 -Obtained weight 756.093387 -Status: success, time spent on this check: 0:00:06.504291 +Skipping DEM-PFV-check.py, because it is in skipScripts. +################################### +running: checkWirePM.py +Status: success, time spent on this check: 0:03:40.810017 +___________________________________ +################################### +Skipping checkFlipSpheres.py, because it is in slowScripts. +################################### +running: checkThermalEngine.py +This checkThermalEngine.py cannot be executed because ENABLE_THERMAL is disabled +Status: success, time spent on this check: 0:00:00.003219 ___________________________________ ################################### running: checkbf_simple.py This is HP, we do not support it! Or architecture is pp64el. Skip -Status: success, time spent on this check: 0:00:00.250762 +Status: success, time spent on this check: 0:00:00.257512 ___________________________________ ################################### -Skipping colliderTorture.py, because it is in slowScripts. -################################### -Skipping checkPolyhedraCrush.py, because it is in skipScripts. -################################### -running: checkPotentialBlocks.py -skip PotentialBlocks check, PotentialBlocks not available -Status: success, time spent on this check: 0:00:00.002990 +running: checkVTKRecorder.py +checkVTKRecorder +Check file 10.vtm +Check file 10/10_0.vtu +Check file 10/10_2.vtp +Status: success, time spent on this check: 0:00:00.147595 ___________________________________ WARNING: some checks took longer than 30 seconds. -Most time spend on a single check: 0:08:03.044253 +Most time spend on a single check: 0:06:28.731003 *** ALL CHECKS PASSED *** Adding slavesdh_numpy3 Possible precedence issue with control flow operator (return) at /usr/bin/dh_numpy3 line 57. @@ -32661,7 +32580,7 @@ dh_numpy3: warning: skipping binary package python3-yade which does not depend on the NumPy C ABI #Generate docs cd /build/reproducible-path/yade-2025.2.0/doc/sphinx && LD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/qt: PYTHONPATH=. /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-double yadeSphinx.py html && LD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/qt: PYTHONPATH=. /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-double yadeSphinx.py latex && LD_LIBRARY_PATH=/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/gts:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade:/build/reproducible-path/yade-2025.2.0/debian/tmp/usr/lib/x86_64-linux-gnu/yade-double/py/yade/qt: PYTHONPATH=. /build/reproducible-path/yade-2025.2.0/debian/tmp/usr/bin/yade-double yadeSphinx.py workarounds && cd _build/latex && xelatex Yade.tex && xelatex Yade.tex && xelatex Yade.tex -TCP python prompt on localhost:9000, auth cookie `dyssek' +TCP python prompt on localhost:9000, auth cookie `dsuksy' Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] Warning: no X rendering available (see https://bbs.archlinux.org/viewtopic.php?id=13189) @@ -32757,22 +32676,22 @@ Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. locale_dir /build/reproducible-path/yade-2025.2.0/doc/sphinx/locales/en/LC_MESSAGES does not exist [autosummary] generating autosummary for: FEMxDEM.rst, FoamCoupling.rst, GPUacceleration.rst, HighPrecisionReal.rst, HydroForceEngine.rst, acousticemissions.rst, amazonEC2.rst, citing.rst, consulting.rst, events.rst, ..., yade.plot.rst, yade.polyhedra_utils.rst, yade.post2d.rst, yade.potential_utils.rst, yade.qt.rst, yade.timing.rst, yade.utils.rst, yade.wrapper.rst, yade.ymport.rst, yadeTechArchive.rst -WARNING: Failed to import yade.qt. -Possible hints: -* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. -* AttributeError: module 'yade' has no attribute 'qt' -WARNING: Failed to import yade.qt._GLViewer. -Possible hints: -* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. -* AttributeError: module 'yade' has no attribute 'qt' WARNING: Failed to import yade.polyhedra_utils. Possible hints: * ImportError: dynamic module does not define module export function (PyInit__polyhedra_utils) * AttributeError: module 'yade' has no attribute 'polyhedra_utils' WARNING: Failed to import yade._polyhedra_utils. Possible hints: -* AttributeError: module 'yade' has no attribute '_polyhedra_utils' * ImportError: dynamic module does not define module export function (PyInit__polyhedra_utils) +* AttributeError: module 'yade' has no attribute '_polyhedra_utils' +WARNING: Failed to import yade.qt. +Possible hints: +* AttributeError: module 'yade' has no attribute 'qt' +* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. +WARNING: Failed to import yade.qt._GLViewer. +Possible hints: +* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. +* AttributeError: module 'yade' has no attribute 'qt' locale_dir /build/reproducible-path/yade-2025.2.0/doc/sphinx/locales/en/LC_MESSAGES does not exist locale_dir /build/reproducible-path/yade-2025.2.0/doc/sphinx/locales/en/LC_MESSAGES does not exist building [mo]: all of 0 po files @@ -33705,8 +33624,8 @@ preparing documents... done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/html/_static/language_data.js +Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/html/_static/basic.css Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/html/_static/sidebar.js Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/html/_static/classic.css @@ -34155,7 +34074,7 @@ build succeeded, 862 warnings. The HTML pages are in _build/html. -TCP python prompt on localhost:9000, auth cookie `yuecas' +TCP python prompt on localhost:9000, auth cookie `ecusad' Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] Warning: no X rendering available (see https://bbs.archlinux.org/viewtopic.php?id=13189) @@ -34251,14 +34170,6 @@ Converting `source_suffix = '.rst'` to `source_suffix = {'.rst': 'restructuredtext'}`. locale_dir /build/reproducible-path/yade-2025.2.0/doc/sphinx/locales/en/LC_MESSAGES does not exist [autosummary] generating autosummary for: FEMxDEM.rst, FoamCoupling.rst, GPUacceleration.rst, HighPrecisionReal.rst, HydroForceEngine.rst, acousticemissions.rst, amazonEC2.rst, citing.rst, consulting.rst, events.rst, ..., yade.plot.rst, yade.polyhedra_utils.rst, yade.post2d.rst, yade.potential_utils.rst, yade.qt.rst, yade.timing.rst, yade.utils.rst, yade.wrapper.rst, yade.ymport.rst, yadeTechArchive.rst -WARNING: Failed to import yade.qt. -Possible hints: -* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. -* AttributeError: module 'yade' has no attribute 'qt' -WARNING: Failed to import yade.qt._GLViewer. -Possible hints: -* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. -* AttributeError: module 'yade' has no attribute 'qt' WARNING: Failed to import yade.polyhedra_utils. Possible hints: * ImportError: dynamic module does not define module export function (PyInit__polyhedra_utils) @@ -34267,6 +34178,14 @@ Possible hints: * ImportError: dynamic module does not define module export function (PyInit__polyhedra_utils) * AttributeError: module 'yade' has no attribute '_polyhedra_utils' +WARNING: Failed to import yade.qt. +Possible hints: +* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. +* AttributeError: module 'yade' has no attribute 'qt' +WARNING: Failed to import yade.qt._GLViewer. +Possible hints: +* ImportError: Connecting to DISPLAY at Yade startup failed, unable to activate the qt5 interface. +* AttributeError: module 'yade' has no attribute 'qt' locale_dir /build/reproducible-path/yade-2025.2.0/doc/sphinx/locales/en/LC_MESSAGES does not exist locale_dir /build/reproducible-path/yade-2025.2.0/doc/sphinx/locales/en/LC_MESSAGES does not exist building [mo]: all of 0 po files @@ -35198,10 +35117,10 @@ done preparing documents... done copying assets... -copying TeX support files... Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/latex/Makefile +copying TeX support files... Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/latex/latexmkjarc Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/latex/latexmkrc Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/latex/make.bat -Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/latex/latexmkjarc +Writing evaluated template result to /build/reproducible-path/yade-2025.2.0/doc/sphinx/_build/latex/Makefile done copying assets: done processing Yade.tex... @@ -35413,7 +35332,7 @@ /build/reproducible-path/yade-2025.2.0/doc/sphinx/yade.ymport.rst:4: WARNING: more than one target found for cross-reference 'Vector3': yade._minieigenHP.HP1.Vector3, yade._minieigenHP.Vector3, yade._minieigenHP.HP2.Vector3, yade.plot.HP1.Vector3, yade.plot.HP2.Vector3, yade.plot.Vector3 [ref.python] /build/reproducible-path/yade-2025.2.0/doc/sphinx/yade.ymport.rst:4: WARNING: more than one target found for cross-reference 'Vector3': yade._minieigenHP.HP1.Vector3, yade._minieigenHP.Vector3, yade._minieigenHP.HP2.Vector3, yade.plot.HP1.Vector3, yade.plot.HP2.Vector3, yade.plot.Vector3 [ref.python] /build/reproducible-path/yade-2025.2.0/doc/sphinx/yade.ymport.rst:4: WARNING: more than one target found for cross-reference 'Vector3': yade._minieigenHP.HP1.Vector3, yade._minieigenHP.Vector3, yade._minieigenHP.HP2.Vector3, yade.plot.HP1.Vector3, yade.plot.HP2.Vector3, yade.plot.Vector3 [ref.python] -WARNING: Could not fetch remote image: https://gitlab.com/yade-dev/yade-data/-/raw/main/static/figs/hackathon.jpg [HTTPSConnectionPool(host='gitlab.com', port=443): Max retries exceeded with url: /yade-dev/yade-data/-/raw/main/static/figs/hackathon.jpg (Caused by NameResolutionError(": Failed to resolve 'gitlab.com' ([Errno -3] Temporary failure in name resolution)"))] +WARNING: Could not fetch remote image: https://gitlab.com/yade-dev/yade-data/-/raw/main/static/figs/hackathon.jpg [HTTPSConnectionPool(host='gitlab.com', port=443): Max retries exceeded with url: /yade-dev/yade-data/-/raw/main/static/figs/hackathon.jpg (Caused by NameResolutionError(": Failed to resolve 'gitlab.com' ([Errno -3] Temporary failure in name resolution)"))] processing Yade.tex: done writing... done copying images... [ 1%] fig/qt-gui.png @@ -35499,7 +35418,7 @@ The LaTeX files are in _build/latex. Run 'make' in that directory to run these through (pdf)latex (use `make latexpdf' here to do that automatically). -TCP python prompt on localhost:9000, auth cookie `sscade' +TCP python prompt on localhost:9000, auth cookie `cydsae' Welcome to Yade 2025.2.0 Using python version: 3.13.7 (main, Aug 20 2025, 22:17:40) [GCC 14.3.0] Warning: no X rendering available (see https://bbs.archlinux.org/viewtopic.php?id=13189) @@ -36830,247 +36749,247 @@ [22] LaTeX Warning: Hyper reference `yade.utils:yade.utils.facet' on page 23 undefin -ed on input line 1560. +ed on input line 1559. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Facet' on page 23 und -efined on input line 1560. +efined on input line 1559. LaTeX Warning: Hyper reference `yade.utils:yade.utils.wall' on page 23 undefine -d on input line 1560. +d on input line 1559. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Wall' on page 23 unde -fined on input line 1560. +fined on input line 1559. LaTeX Warning: Hyper reference `yade.utils:yade.utils.box' on page 23 undefined - on input line 1560. + on input line 1559. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Box' on page 23 undef -ined on input line 1560. +ined on input line 1559. LaTeX Warning: Hyper reference `yade.utils:yade.utils.aabbWall' on page 23 unde -fined on input line 1568. +fined on input line 1567. LaTeX Warning: Hyper reference `yade.ymport:' on page 23 undefined on input lin -e 1568. +e 1567. [23] LaTeX Warning: Hyper reference `yade.pack:yade._packSpheres.SpherePack.makeClou -d' on page 24 undefined on input line 1622. +d' on page 24 undefined on input line 1621. LaTeX Warning: Hyper reference `yade.utils:yade.utils.aabbWall' on page 24 unde -fined on input line 1626. +fined on input line 1625. [24] LaTeX Warning: Hyper reference `yade.PWaveTimeStep:' on page 25 undefined on in -put line 1685. +put line 1684. Missing character: There is no ⟳ (U+27F3) in font [lmroman10-italic]:mapping=te x-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GravityEngine.gravity -' on page 25 undefined on input line 1749. +' on page 25 undefined on input line 1748. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.NewtonIntegrator.damp -ing' on page 25 undefined on input line 1757. +ing' on page 25 undefined on input line 1756. [25] LaTeX Warning: Hyper reference `tutorial-examples:bouncing-sphere' on page 26 u -ndefined on input line 1775. +ndefined on input line 1774. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega' on page 26 und -efined on input line 1793. +efined on input line 1792. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.engines' on pag -e 26 undefined on input line 1798. +e 26 undefined on input line 1797. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.engines' on pag -e 26 undefined on input line 1810. +e 26 undefined on input line 1809. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.bodies' on page - 26 undefined on input line 1815. + 26 undefined on input line 1814. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.id' on page 26 u -ndefined on input line 1818. +ndefined on input line 1817. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.id' on page 26 u -ndefined on input line 1829. +ndefined on input line 1828. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.id' on page 26 u -ndefined on input line 1829. +ndefined on input line 1828. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.erase' -on page 26 undefined on input line 1829. +on page 26 undefined on input line 1828. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Functor' on page 27 u -ndefined on input line 1865. +ndefined on input line 1864. LaTeX Warning: Hyper reference `tutorial-examples:gravity-deposition' on page 2 -7 undefined on input line 1895. +7 undefined on input line 1894. LaTeX Warning: Hyper reference `yade.utils:yade._utils.unbalancedForce' on page - 27 undefined on input line 1926. + 27 undefined on input line 1925. LaTeX Warning: Hyper reference `yade.utils:yade._utils.porosity' on page 27 und -efined on input line 1930. +efined on input line 1929. LaTeX Warning: Hyper reference `yade.utils:yade.utils.avgNumInteractions' on pa -ge 27 undefined on input line 1934. +ge 27 undefined on input line 1933. LaTeX Warning: Hyper reference `yade.utils:yade._utils.normalShearStressTensors -' on page 27 undefined on input line 1938. +' on page 27 undefined on input line 1937. [27] LaTeX Warning: Hyper reference `yade.utils:yade.utils.plotDirections' on page 2 -8 undefined on input line 1942. +8 undefined on input line 1941. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.energy' on page - 28 undefined on input line 1957. + 28 undefined on input line 1956. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PyRunner' on page 28 -undefined on input line 1966. +undefined on input line 1965. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PeriodicEngine' on pa -ge 28 undefined on input line 1966. +ge 28 undefined on input line 1965. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.engines' on pag -e 28 undefined on input line 1966. +e 28 undefined on input line 1965. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.engines' on pag -e 28 undefined on input line 1985. +e 28 undefined on input line 1984. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PyRunner.updateGlobal -s' on page 28 undefined on input line 2003. +s' on page 28 undefined on input line 2002. [28] LaTeX Warning: Hyper reference `tutorial-examples:gravity-deposition' on page 2 -9 undefined on input line 2014. +9 undefined on input line 2013. LaTeX Warning: Hyper reference `yade.utils:yade._utils.unbalancedForce' on page - 29 undefined on input line 2019. + 29 undefined on input line 2018. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.NewtonIntegrator.damp -ing' on page 29 undefined on input line 2027. +ing' on page 29 undefined on input line 2026. LaTeX Warning: Hyper reference `yade.plot:' on page 29 undefined on input line -2043. +2042. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PyRunner' on page 29 -undefined on input line 2051. +undefined on input line 2050. LaTeX Warning: Hyper reference `yade.plot:yade.plot.addData' on page 29 undefin -ed on input line 2051. +ed on input line 2050. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.engines' on pag -e 29 undefined on input line 2061. +e 29 undefined on input line 2060. LaTeX Warning: Hyper reference `yade.plot:yade.plot.data' on page 29 undefined -on input line 2077. +on input line 2076. LaTeX Warning: Hyper reference `yade.plot:yade.plot.saveDataTxt' on page 29 und -efined on input line 2077. +efined on input line 2076. LaTeX Warning: Hyper reference `yade.plot:' on page 29 undefined on input line -2083. +2082. LaTeX Warning: Hyper reference `yade.plot:yade.plot.addData' on page 29 undefin -ed on input line 2083. +ed on input line 2082. LaTeX Warning: Hyper reference `yade.plot:yade.plot.plots' on page 29 undefined - on input line 2083. + on input line 2082. LaTeX Warning: Hyper reference `yade.plot:yade.plot.addData' on page 29 undefin -ed on input line 2090. +ed on input line 2089. [29] LaTeX Warning: Hyper reference `yade.plot:yade.plot.addData' on page 30 undefin -ed on input line 2108. +ed on input line 2107. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.EnergyTracker.total' -on page 30 undefined on input line 2115. +on page 30 undefined on input line 2114. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.EnergyTracker' on pag -e 30 undefined on input line 2115. +e 30 undefined on input line 2114. Missing character: There is no ▶ (U+25B6) in font [lmroman10-regular]:mapping=t ex-text;! @@ -37080,2741 +36999,2741 @@ ex-text;! LaTeX Warning: Hyper reference `tutorial-examples:gravity-deposition' on page 3 -1 undefined on input line 2208. +1 undefined on input line 2207. 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[469] -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 470 undefined on input line 82147. - - -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 470 undefined on input line 82160. - - -Underfull \hbox (badness 10000) in paragraph at lines 82158--82161 -\TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use -d if - -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 470 undefined on input line 82186. - - -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ParallelEngine' on pa -ge 470 undefined on input line 82186. - - -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 470 undefined on input line 82212. - - LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MatchMaker.matches' o -n page 470 undefined on input line 82245. +n page 470 undefined on input line 82332. 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[471] [472] -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet' on page 473 - undefined on input line 83010. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FastMarchingMethod.gr +id' on page 473 undefined on input line 82934. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.min' on p -age 473 undefined on input line 83010. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FastMarchingMethod.ph +iIni' on page 473 undefined on input line 82934. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.nGP' on p -age 473 undefined on input line 83010. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FastMarchingMethod.sp +eed' on page 473 undefined on input line 82934. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.spacing' -on page 473 undefined on input line 83010. +LaTeX Warning: Citation `publications:duriez2021b' on page 473 undefined on inp +ut line 82934. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.min' on p -age 473 undefined on input line 83010. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid' on page +473 undefined on input line 82959. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.spacing' -on page 473 undefined on input line 83010. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FastMarchingMethod.gr +id' on page 473 undefined on input line 83000. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.nGP' on p -age 473 undefined on input line 83010. +LaTeX Warning: Citation `publications:duriez2021b' on page 473 undefined on inp +ut line 83013. -[473] +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet' on page 473 + undefined on input line 83046. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 474 undefined on input line 83315. + +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.min' on p +age 473 undefined on input line 83046. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 474 undefined on input line 83328. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.nGP' on p +age 473 undefined on input line 83046. -Underfull \hbox (badness 10000) in paragraph at lines 83326--83329 -\TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use -d if +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.spacing' +on page 473 undefined on input line 83046. -[474] -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 475 undefined on input line 83354. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.min' on p +age 473 undefined on input line 83046. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ParallelEngine' on pa -ge 475 undefined on input line 83354. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.spacing' +on page 473 undefined on input line 83046. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 475 undefined on input line 83367. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.RegularGrid.nGP' on p +age 473 undefined on input line 83046. +[473] +[474] + LaTeX Warning: Citation `publications:brzezinski2022' on page 475 undefined on -input line 83469. +input line 83468. -[475] +LaTeX Warning: Hyper reference `yade.bf:splitting-clump' on page 475 undefined +on input line 83484. -LaTeX Warning: Hyper reference `yade.bf:splitting-clump' on page 476 undefined -on input line 83485. +[475] LaTeX Warning: Hyper reference `yade.bf:handling-new-clumps' on page 476 undefi -ned on input line 83489. +ned on input line 83488. 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[484] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 485 undefined on input line 84592. + on page 485 undefined on input line 84591. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Quaterni -on' on page 485 undefined on input line 84616. +on' on page 485 undefined on input line 84615. Missing character: There is no θ (U+03B8) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 485 undefined on input line 84661. + on page 485 undefined on input line 84660. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Quaterni -on' on page 485 undefined on input line 84681. +on' on page 485 undefined on input line 84680. Missing character: There is no θ (U+03B8) in font [lmmono10-italic]:! [485] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 486 undefined on input line 84759. + on page 486 undefined on input line 84758. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Quaterni -on' on page 486 undefined on input line 84771. +on' on page 486 undefined on input line 84770. Missing character: There is no θ (U+03B8) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 486 undefined on input line 84808. + on page 486 undefined on input line 84807. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 486 undefined on input line 84812. + on page 486 undefined on input line 84811. LaTeX Warning: Hyper reference `yade.math:yade._math.HP2.Real' on page 486 unde -fined on input line 84816. +fined on input line 84815. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Quaterni -on' on page 486 undefined on input line 84820. +on' on page 486 undefined on input line 84819. LaTeX Warning: Hyper reference `yade.utils:yade.utils.facet' on page 486 undefi -ned on input line 84828. - +ned on input line 84827. -[486] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 487 undefined on input line 84857. + on page 486 undefined on input line 84856. +[486] + LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Quaterni -on' on page 487 undefined on input line 84869. +on' on page 487 undefined on input line 84868. Missing character: There is no θ (U+03B8) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 487 undefined on input line 84922. + on page 487 undefined on input line 84921. LaTeX Warning: Citation `publications:effeindzourou2016' on page 487 undefined -on input line 84957. +on input line 84956. LaTeX Warning: Citation `publications:effeindzourou2015a' on page 487 undefined - on input line 84957. + on input line 84956. LaTeX Warning: Citation `publications:bourrier2013' on page 487 undefined on in -put line 84957. +put line 84956. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 487 undefined on input line 84960. +ge 487 undefined on input line 84959. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 487 u -ndefined on input line 84981. +ndefined on input line 84980. [487] LaTeX Warning: Hyper reference `yade.math:yade._math.HP2.Real' on page 488 unde -fined on input line 85012. +fined on input line 85011. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 488 undefined on input line 85016. + on page 488 undefined on input line 85015. 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LaTeX Warning: Hyper reference `yade.gridpfacet:yade.gridpfacet.cylinderConnect -ion' on page 488 undefined on input line 85037. +ion' on page 488 undefined on input line 85036. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 488 undefined on input line 85053. +ge 488 undefined on input line 85052. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 488 undefined on input line 85058. + on page 488 undefined on input line 85057. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 488 undefined on input line 85062. + on page 488 undefined on input line 85061. LaTeX Warning: Hyper reference `yade.math:yade._math.HP2.Real' on page 488 unde -fined on input line 85066. +fined on input line 85065. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 488 - undefined on input line 85070. + undefined on input line 85069. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 488 undefined on input line 85104. - +ge 488 undefined on input line 85103. -[488] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 489 undefined on input line 85108. + on page 488 undefined on input line 85107. + +[488] LaTeX Warning: Hyper reference `yade.gridpfacet:yade.gridpfacet.cylinder' on pa -ge 489 undefined on input line 85113. +ge 489 undefined on input line 85112. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 489 u -ndefined on input line 85149. +ndefined on input line 85148. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.material' on pag -e 489 undefined on input line 85153. +e 489 undefined on input line 85152. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 - undefined on input line 85153. + undefined on input line 85152. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.material' on pag -e 489 undefined on input line 85157. +e 489 undefined on input line 85156. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 489 u -ndefined on input line 85157. +ndefined on input line 85156. LaTeX Warning: Hyper reference `yade.utils:yade.utils.sphere' on page 489 undef -ined on input line 85164. +ined on input line 85163. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 - undefined on input line 85168. + undefined on input line 85167. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 489 undefined on input line 85168. +ge 489 undefined on input line 85167. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 489 u -ndefined on input line 85168. +ndefined on input line 85167. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 489 undefined on input line 85192. +ge 489 undefined on input line 85191. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 - undefined on input line 85192. + undefined on input line 85191. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 - undefined on input line 85197. + undefined on input line 85196. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 - undefined on input line 85201. + undefined on input line 85200. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 489 undefined on input line 85205. + on page 489 undefined on input line 85204. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Interaction.cellDist' - on page 489 undefined on input line 85205. + on page 489 undefined on input line 85204. LaTeX Warning: Hyper reference `yade.utils:yade.utils.sphere' on page 489 undef -ined on input line 85212. +ined on input line 85211. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 489 undefined on input line 85216. +ge 489 undefined on input line 85215. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.shape' on page 4 -89 undefined on input line 85216. +89 undefined on input line 85215. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 - undefined on input line 85222. + undefined on input line 85221. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 489 undefined on input line 85222. - +ge 489 undefined on input line 85221. -[489] -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 - undefined on input line 85238. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 489 + undefined on input line 85237. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 490 undefined on input line 85238. +ge 489 undefined on input line 85237. + +[489] LaTeX Warning: Hyper reference `yade.utils:yade.utils.sphere' on page 490 undef -ined on input line 85241. +ined on input line 85240. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridNode' on page 490 - undefined on input line 85245. + undefined on input line 85244. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.shape' on page 4 -90 undefined on input line 85245. +90 undefined on input line 85244. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85262. +ndefined on input line 85261. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85279. +ndefined on input line 85278. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.material' on pag -e 490 undefined on input line 85283. +e 490 undefined on input line 85282. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 - undefined on input line 85283. + undefined on input line 85282. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.material' on pag -e 490 undefined on input line 85287. +e 490 undefined on input line 85286. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85287. +ndefined on input line 85286. LaTeX Warning: Hyper reference `yade.utils:yade.utils.sphere' on page 490 undef -ined on input line 85294. +ined on input line 85293. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 - undefined on input line 85298. + undefined on input line 85297. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 490 undefined on input line 85298. +ge 490 undefined on input line 85297. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85298. +ndefined on input line 85297. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85315. +ndefined on input line 85314. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 - undefined on input line 85315. + undefined on input line 85314. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 490 undefined on input line 85315. +ge 490 undefined on input line 85314. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 490 undefined on input line 85320. +ge 490 undefined on input line 85319. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 - undefined on input line 85320. + undefined on input line 85319. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 490 undefined on input line 85332. + on page 490 undefined on input line 85331. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Interaction.cellDist' - on page 490 undefined on input line 85332. + on page 490 undefined on input line 85331. LaTeX Warning: Hyper reference `yade.utils:yade.utils.sphere' on page 490 undef -ined on input line 85339. +ined on input line 85338. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85343. +ndefined on input line 85342. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.shape' on page 4 -90 undefined on input line 85343. +90 undefined on input line 85342. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 - undefined on input line 85349. + undefined on input line 85348. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 490 undefined on input line 85349. +ge 490 undefined on input line 85348. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u -ndefined on input line 85349. +ndefined on input line 85348. -[490] +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 490 u +ndefined on input line 85364. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85365. +LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 490 + undefined on input line 85364. -LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85365. +[490] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 491 undefined on input line 85370. + on page 491 undefined on input line 85369. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 491 undefined on input line 85370. + on page 491 undefined on input line 85369. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 491 undefined on input line 85370. + on page 491 undefined on input line 85369. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85374. +ndefined on input line 85373. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85378. + undefined on input line 85377. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 491 undefined on input line 85382. +ge 491 undefined on input line 85381. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85386. +ndefined on input line 85385. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.material' on pag -e 491 undefined on input line 85390. +e 491 undefined on input line 85389. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85390. + undefined on input line 85389. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.material' on pag -e 491 undefined on input line 85394. +e 491 undefined on input line 85393. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85394. +ndefined on input line 85393. LaTeX Warning: Hyper reference `yade.utils:yade.utils.sphere' on page 491 undef -ined on input line 85401. +ined on input line 85400. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85416. +ndefined on input line 85415. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85416. + undefined on input line 85415. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 491 undefined on input line 85421. +ge 491 undefined on input line 85420. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85421. + undefined on input line 85420. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 491 undefined on input line 85425. + on page 491 undefined on input line 85424. LaTeX Warning: Hyper reference `yade.gridpfacet:yade.gridpfacet.pfacetCreator1' - on page 491 undefined on input line 85432. + on page 491 undefined on input line 85431. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85447. +ndefined on input line 85446. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85447. + undefined on input line 85446. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 491 - undefined on input line 85451. + undefined on input line 85450. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85451. +ndefined on input line 85450. LaTeX Warning: Hyper reference `yade.gridpfacet:yade.gridpfacet.pfacetCreator1' - on page 491 undefined on input line 85456. + on page 491 undefined on input line 85455. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85471. +ndefined on input line 85470. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 491 undefined on input line 85471. +ge 491 undefined on input line 85470. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 491 undefined on input line 85475. +ge 491 undefined on input line 85474. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PFacet' on page 491 u -ndefined on input line 85475. +ndefined on input line 85474. LaTeX Warning: Hyper reference `yade.gridpfacet:yade.gridpfacet.pfacetCreator1' - on page 491 undefined on input line 85480. + on page 491 undefined on input line 85479. -[491] - LaTeX Warning: Hyper reference `yade.libVersions:yade.libVersions.printAllVersi -ons' on page 492 undefined on input line 85502. +ons' on page 491 undefined on input line 85501. +[491] + LaTeX Warning: Hyper reference `installation:prerequisites' on page 492 undefin -ed on input line 85505. +ed on input line 85504. LaTeX Warning: Hyper reference `installation:prerequisites' on page 492 undefin -ed on input line 85509. +ed on input line 85508. LaTeX Warning: Hyper reference `yade.libVersions:yade.libVersions.printAllVersi -ons' on page 492 undefined on input line 85546. +ons' on page 492 undefined on input line 85545. [492] [493] +Overfull \vbox (3.483pt too high) detected at line 85792 + [494] -Underfull \hbox (badness 10000) in paragraph at lines 85824--85828 +Underfull \hbox (badness 10000) in paragraph at lines 85823--85827 []\TU/lmr/m/n/10 There is a c++ template function for interpolating on such seq uences in Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! - -[495] Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! +[495] + LaTeX Warning: Hyper reference `prog:debugging' on page 496 undefined on input -line 85924. +line 85923. [496] @@ -52861,18 +52782,18 @@ Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! -[497] +LaTeX Warning: Hyper reference `yade.math:yade.math.linspace' on page 497 undef +ined on input line 86259. -LaTeX Warning: Hyper reference `yade.math:yade.math.linspace' on page 498 undef -ined on input line 86260. +[497] LaTeX Warning: Hyper reference `HighPrecisionReal:cpp-hp-compatibility' on page - 498 undefined on input line 86279. + 498 undefined on input line 86278. LaTeX Warning: Hyper reference `HighPrecisionReal:higher-hp-precision' on page -498 undefined on input line 86305. +498 undefined on input line 86304. Missing character: There is no ↔ (U+2194) in font [lmroman10-regular]:mapping=t ex-text;! @@ -52886,47 +52807,48 @@ ex-text;! [500] -Underfull \hbox (badness 10000) in paragraph at lines 86920--86922 +Underfull \hbox (badness 10000) in paragraph at lines 86919--86921 \TU/lmr/m/n/10 argument in radians. Depending on compilation options wraps [501] [502] [503] -Underfull \hbox (badness 10000) in paragraph at lines 87263--87265 +Underfull \hbox (badness 10000) in paragraph at lines 87262--87264 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 87263--87265 +Underfull \hbox (badness 10000) in paragraph at lines 87262--87264 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps -[504] -Underfull \hbox (badness 7415) in paragraph at lines 87416--87418 +Underfull \hbox (badness 7415) in paragraph at lines 87415--87417 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of +[504] + LaTeX Warning: Hyper reference `yade.math:yade._math.fromBits' on page 505 unde -fined on input line 87486. +fined on input line 87485. [505] [506] -Underfull \hbox (badness 5374) in paragraph at lines 87824--87826 +Underfull \hbox (badness 5374) in paragraph at lines 87823--87825 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 6125) in paragraph at lines 87824--87826 +Underfull \hbox (badness 6125) in paragraph at lines 87823--87825 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps [507] [508] [509] -Underfull \hbox (badness 7451) in paragraph at lines 88338--88340 +Underfull \hbox (badness 7451) in paragraph at lines 88337--88339 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the spherical harmonic polynomial of the or ders \TU/lmtt/m/n/10 l \TU/lmr/m/n/10 (unsigned -Underfull \hbox (badness 10000) in paragraph at lines 88338--88340 +Underfull \hbox (badness 10000) in paragraph at lines 88337--88339 \TU/lmr/m/n/10 <[][]$[][][][][] [] [] [] [][][] [] [][][][][] [] [][][] [] [][] [] [] [][][][] [] [] [] [][] [] [] [] [][][][] [] [][][][] [] [][][] [] [][][][ ] [] [][][][] [] [][][][][][][] [] @@ -52938,139 +52860,139 @@ ex-text;! LaTeX Warning: Hyper reference `yade.math:yade._math.HP2.Real' on page 513 unde -fined on input line 88978. +fined on input line 88977. [513] -Underfull \hbox (badness 10000) in paragraph at lines 89126--89128 +Underfull \hbox (badness 10000) in paragraph at lines 89125--89127 \TU/lmr/m/n/10 argument in radians. Depending on compilation options wraps [514] [515] -[516] -Underfull \hbox (badness 10000) in paragraph at lines 89469--89471 +Underfull \hbox (badness 10000) in paragraph at lines 89468--89470 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 89469--89471 +Underfull \hbox (badness 10000) in paragraph at lines 89468--89470 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps -Underfull \hbox (badness 7415) in paragraph at lines 89622--89624 +[516] +Underfull \hbox (badness 7415) in paragraph at lines 89621--89623 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of [517] LaTeX Warning: Hyper reference `yade.math:yade._math.fromBits' on page 518 unde -fined on input line 89692. +fined on input line 89691. [518] [519] -Underfull \hbox (badness 5374) in paragraph at lines 90030--90032 +Underfull \hbox (badness 5374) in paragraph at lines 90029--90031 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 6125) in paragraph at lines 90030--90032 +Underfull \hbox (badness 6125) in paragraph at lines 90029--90031 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps [520] [521] [522] -Underfull \hbox (badness 7451) in paragraph at lines 90544--90546 +Underfull \hbox (badness 7451) in paragraph at lines 90543--90545 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the spherical harmonic polynomial of the or ders \TU/lmtt/m/n/10 l \TU/lmr/m/n/10 (unsigned -Underfull \hbox (badness 10000) in paragraph at lines 90544--90546 +Underfull \hbox (badness 10000) in paragraph at lines 90543--90545 \TU/lmr/m/n/10 <[][]$[][][][][] [] [] [] [][][] [] [][][][][] [] [][][] [] [][] [] [] [][][][] [] [] [] [][] [] [] [] [][][][] [] [][][][] [] [][][] [] [][][][ ] [] [][][][] [] [][][][][][][] [] [523] -[524] Missing character: There is no π (U+03C0) in font [lmroman10-regular]:mapping=t ex-text;! + +[524] Missing character: There is no ↔ (U+2194) in font [lmroman10-regular]:mapping=t ex-text;! [525] -Underfull \hbox (badness 10000) in paragraph at lines 91152--91154 +Underfull \hbox (badness 10000) in paragraph at lines 91151--91153 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic cosine of the \TU/lmt t/m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91152--91154 +Underfull \hbox (badness 10000) in paragraph at lines 91151--91153 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps [526] -Underfull \hbox (badness 10000) in paragraph at lines 91228--91230 +Underfull \hbox (badness 10000) in paragraph at lines 91227--91229 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic sine of the \TU/lmtt/ m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91228--91230 +Underfull \hbox (badness 10000) in paragraph at lines 91227--91229 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps -[527] -Underfull \hbox (badness 10000) in paragraph at lines 91304--91306 +Underfull \hbox (badness 10000) in paragraph at lines 91303--91305 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic tangent of the \TU/lm tt/m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91304--91306 +Underfull \hbox (badness 10000) in paragraph at lines 91303--91305 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps +[527] [528] -Underfull \hbox (badness 10000) in paragraph at lines 91527--91529 +Underfull \hbox (badness 10000) in paragraph at lines 91526--91528 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 91527--91529 +Underfull \hbox (badness 10000) in paragraph at lines 91526--91528 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps [529] -Underfull \hbox (badness 10000) in paragraph at lines 91682--91684 +Underfull \hbox (badness 10000) in paragraph at lines 91681--91683 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of -Underfull \hbox (badness 10000) in paragraph at lines 91682--91684 +Underfull \hbox (badness 10000) in paragraph at lines 91681--91683 \TU/lmr/m/n/10 the arguments \TU/lmtt/m/n/10 x \TU/lmr/m/n/10 and \TU/lmtt/m/n/ 10 y\TU/lmr/m/n/10 . Depending on compilation options wraps LaTeX Warning: Hyper reference `yade.math:yade._math.fromBits' on page 530 unde -fined on input line 91752. +fined on input line 91751. [530] LaTeX Warning: Hyper reference `yade.math:yade._math.getFloatDistanceULP' on pa -ge 531 undefined on input line 91880. +ge 531 undefined on input line 91879. -[531] - -LaTeX Warning: Hyper reference `prog:logging' on page 532 undefined on input li -ne 91905. +LaTeX Warning: Hyper reference `prog:logging' on page 531 undefined on input li +ne 91904. -LaTeX Warning: Hyper reference `prog:logging' on page 532 undefined on input li -ne 91905. +LaTeX Warning: Hyper reference `prog:logging' on page 531 undefined on input li +ne 91904. LaTeX Warning: Hyper reference `yade.math:yade._math.getRealHPErrors' on page 5 -32 undefined on input line 91913. +31 undefined on input line 91912. LaTeX Warning: Hyper reference `yade.math:yade._math.getFloatDistanceULP' on pa -ge 532 undefined on input line 91924. +ge 531 undefined on input line 91923. +[531] [532] -Underfull \hbox (badness 10000) in paragraph at lines 92191--92193 +Underfull \hbox (badness 10000) in paragraph at lines 92190--92192 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 10000) in paragraph at lines 92191--92193 +Underfull \hbox (badness 10000) in paragraph at lines 92190--92192 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps @@ -53078,1057 +53000,1057 @@ [534] [535] [536] -Underfull \hbox (badness 10000) in paragraph at lines 92802--92804 +Underfull \hbox (badness 10000) in paragraph at lines 92801--92803 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the hyperbolic tangent of the \TU/lmtt/m /n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 92802--92804 +Underfull \hbox (badness 10000) in paragraph at lines 92801--92803 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps LaTeX Warning: Hyper reference `yade.math:yade._math.HP2.Real' on page 537 unde -fined on input line 92926. +fined on input line 92925. [537] LaTeX Warning: Hyper reference `HighPrecisionReal:highprecisionreal' on page 53 -8 undefined on input line 93033. +8 undefined on input line 93032. LaTeX Warning: Hyper reference `HighPrecisionReal:higher-hp-precision' on page -538 undefined on input line 93037. +538 undefined on input line 93036. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 538 undefined on input line 93083. - +page 538 undefined on input line 93082. -[538] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox2' - on page 539 undefined on input line 93149. + on page 538 undefined on input line 93148. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox2' - on page 539 undefined on input line 93171. + on page 538 undefined on input line 93170. + +[538] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 539 undefined on input line 93193. +page 539 undefined on input line 93192. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 539 undefined on input line 93248. +page 539 undefined on input line 93247. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox3' - on page 539 undefined on input line 93314. + on page 539 undefined on input line 93313. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox3' - on page 539 undefined on input line 93336. + on page 539 undefined on input line 93335. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 539 undefined on input line 93358. +page 539 undefined on input line 93357. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 539 undefined on input line 93420. +page 539 undefined on input line 93419. -[539] - LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox2' - on page 540 undefined on input line 93486. + on page 539 undefined on input line 93485. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox2' - on page 540 undefined on input line 93508. + on page 539 undefined on input line 93507. +[539] + LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 540 undefined on input line 93530. +page 540 undefined on input line 93529. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 540 undefined on input line 93585. +page 540 undefined on input line 93584. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox3' - on page 540 undefined on input line 93651. + on page 540 undefined on input line 93650. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox3' - on page 540 undefined on input line 93673. + on page 540 undefined on input line 93672. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 540 undefined on input line 93695. +page 540 undefined on input line 93694. [540] -Underfull \hbox (badness 10000) in paragraph at lines 93932--93935 +Underfull \hbox (badness 10000) in paragraph at lines 93931--93934 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that -[541] - LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix3. -computeUnitaryPositive' on page 542 undefined on input line 94054. +computeUnitaryPositive' on page 541 undefined on input line 94053. +[541] + LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix3. -selfAdjointEigenDecomposition' on page 542 undefined on input line 94144. +selfAdjointEigenDecomposition' on page 542 undefined on input line 94143. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix3. -jacobiSVD' on page 542 undefined on input line 94189. +jacobiSVD' on page 542 undefined on input line 94188. [542] [543] -Underfull \hbox (badness 10000) in paragraph at lines 94795--94798 +Underfull \hbox (badness 10000) in paragraph at lines 94794--94797 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [544] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix6. -computeUnitaryPositive' on page 545 undefined on input line 94947. +computeUnitaryPositive' on page 545 undefined on input line 94946. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix6. -selfAdjointEigenDecomposition' on page 545 undefined on input line 95037. +selfAdjointEigenDecomposition' on page 545 undefined on input line 95036. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix6. -jacobiSVD' on page 545 undefined on input line 95082. +jacobiSVD' on page 545 undefined on input line 95081. [545] [546] [547] -Underfull \hbox (badness 10000) in paragraph at lines 95787--95790 +Underfull \hbox (badness 10000) in paragraph at lines 95786--95789 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.MatrixX. -computeUnitaryPositive' on page 548 undefined on input line 95909. +computeUnitaryPositive' on page 548 undefined on input line 95908. -[548] - LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.MatrixX. -selfAdjointEigenDecomposition' on page 549 undefined on input line 96014. +selfAdjointEigenDecomposition' on page 548 undefined on input line 96013. +[548] + LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.MatrixX. -jacobiSVD' on page 549 undefined on input line 96059. +jacobiSVD' on page 549 undefined on input line 96058. [549] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion.t -oAxisAngle' on page 550 undefined on input line 96512. +oAxisAngle' on page 550 undefined on input line 96511. -[550] - LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 551 undefined on input line 96532. +page 550 undefined on input line 96531. +[550] + LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion' -on page 551 undefined on input line 96609. +on page 551 undefined on input line 96608. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion' -on page 551 undefined on input line 96621. +on page 551 undefined on input line 96620. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion' -on page 551 undefined on input line 96657. +on page 551 undefined on input line 96656. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion' -on page 551 undefined on input line 96681. +on page 551 undefined on input line 96680. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Matrix3' on -page 551 undefined on input line 96717. +page 551 undefined on input line 96716. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 551 undefined on input line 96729. +page 551 undefined on input line 96728. [551] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 552 undefined on input line 96811. +page 552 undefined on input line 96810. [552] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 553 undefined on input line 97177. + page 553 undefined on input line 97176. [553] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 554 undefined on input line 97522. + page 554 undefined on input line 97521. [554] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 555 undefined on input line 97822. +page 555 undefined on input line 97821. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 555 undefined on input line 97925. +page 555 undefined on input line 97924. [555] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 556 undefined on input line 98162. +page 556 undefined on input line 98161. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 556 undefined on input line 98174. +page 556 undefined on input line 98173. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 556 undefined on input line 98186. +page 556 undefined on input line 98185. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 556 undefined on input line 98198. +page 556 undefined on input line 98197. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 556 undefined on input line 98210. +page 556 undefined on input line 98209. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 556 undefined on input line 98222. +page 556 undefined on input line 98221. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3c' on - page 556 undefined on input line 98282. + page 556 undefined on input line 98281. [556] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3c' on - page 557 undefined on input line 98385. + page 557 undefined on input line 98384. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 557 undefined on input line 98592. + page 557 undefined on input line 98591. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 557 undefined on input line 98604. + page 557 undefined on input line 98603. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 557 undefined on input line 98616. + page 557 undefined on input line 98615. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 557 undefined on input line 98628. + page 557 undefined on input line 98627. -[557] - LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 558 undefined on input line 98640. + page 557 undefined on input line 98639. +[557] + LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2c' on - page 558 undefined on input line 98652. + page 558 undefined on input line 98651. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3i' on - page 558 undefined on input line 98721. + page 558 undefined on input line 98720. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3i' on - page 558 undefined on input line 98824. + page 558 undefined on input line 98823. [558] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 559 undefined on input line 98986. + page 559 undefined on input line 98985. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 559 undefined on input line 98998. + page 559 undefined on input line 98997. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 559 undefined on input line 99010. + page 559 undefined on input line 99009. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 559 undefined on input line 99022. + page 559 undefined on input line 99021. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 559 undefined on input line 99034. + page 559 undefined on input line 99033. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2i' on - page 559 undefined on input line 99046. + page 559 undefined on input line 99045. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector4' on -page 559 undefined on input line 99115. +page 559 undefined on input line 99114. [559] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector6' on -page 560 undefined on input line 99470. +page 560 undefined on input line 99469. [560] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 561 undefined on input line 99558. +page 561 undefined on input line 99557. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 561 undefined on input line 99780. +page 561 undefined on input line 99779. [561] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector6c' on - page 562 undefined on input line 99840. + page 562 undefined on input line 99839. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3c' on - page 562 undefined on input line 99928. + page 562 undefined on input line 99927. [562] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3c' on - page 563 undefined on input line 100120. + page 563 undefined on input line 100119. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector6i' on - page 563 undefined on input line 100189. + page 563 undefined on input line 100188. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3i' on - page 563 undefined on input line 100277. + page 563 undefined on input line 100276. [563] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3i' on - page 564 undefined on input line 100424. + page 564 undefined on input line 100423. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorX' on -page 564 undefined on input line 100455. +page 564 undefined on input line 100454. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorX' on -page 564 undefined on input line 100482. +page 564 undefined on input line 100481. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorX' on -page 564 undefined on input line 100494. +page 564 undefined on input line 100493. [564] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorXc' on - page 565 undefined on input line 100804. + page 565 undefined on input line 100803. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorXc' on - page 565 undefined on input line 100831. + page 565 undefined on input line 100830. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorXc' on - page 565 undefined on input line 100843. + page 565 undefined on input line 100842. [565] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 566 undefined on input line 101161. +page 566 undefined on input line 101160. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox2' - on page 566 undefined on input line 101227. + on page 566 undefined on input line 101226. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox2' - on page 566 undefined on input line 101249. + on page 566 undefined on input line 101248. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector2' on -page 566 undefined on input line 101271. +page 566 undefined on input line 101270. LaTeX Warning: Hyper reference `yade.plot:yade.plot.HP2.Real' on page 566 undef -ined on input line 101283. +ined on input line 101282. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 566 undefined on input line 101326. +page 566 undefined on input line 101325. [566] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox3' - on page 567 undefined on input line 101392. + on page 567 undefined on input line 101391. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.AlignedBox3' - on page 567 undefined on input line 101414. + on page 567 undefined on input line 101413. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 567 undefined on input line 101436. +page 567 undefined on input line 101435. LaTeX Warning: Hyper reference `yade.plot:yade.plot.HP2.Real' on page 567 undef -ined on input line 101448. +ined on input line 101447. [567] -Underfull \hbox (badness 10000) in paragraph at lines 101754--101757 +Underfull \hbox (badness 10000) in paragraph at lines 101753--101756 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [568] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.Matrix3. -computeUnitaryPositive' on page 569 undefined on input line 101876. +computeUnitaryPositive' on page 569 undefined on input line 101875. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.Matrix3. -selfAdjointEigenDecomposition' on page 569 undefined on input line 101966. +selfAdjointEigenDecomposition' on page 569 undefined on input line 101965. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.Matrix3. -jacobiSVD' on page 569 undefined on input line 102011. +jacobiSVD' on page 569 undefined on input line 102010. [569] [570] [571] -Underfull \hbox (badness 10000) in paragraph at lines 102617--102620 +Underfull \hbox (badness 10000) in paragraph at lines 102616--102619 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.Matrix6. -computeUnitaryPositive' on page 572 undefined on input line 102769. +computeUnitaryPositive' on page 572 undefined on input line 102768. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.Matrix6. -selfAdjointEigenDecomposition' on page 572 undefined on input line 102859. +selfAdjointEigenDecomposition' on page 572 undefined on input line 102858. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.Matrix6. -jacobiSVD' on page 572 undefined on input line 102904. +jacobiSVD' on page 572 undefined on input line 102903. [572] [573] [574] [575] -Underfull \hbox (badness 10000) in paragraph at lines 103609--103612 +Underfull \hbox (badness 10000) in paragraph at lines 103608--103611 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.MatrixX. -computeUnitaryPositive' on page 576 undefined on input line 103731. +computeUnitaryPositive' on page 576 undefined on input line 103730. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.MatrixX. -selfAdjointEigenDecomposition' on page 576 undefined on input line 103836. +selfAdjointEigenDecomposition' on page 576 undefined on input line 103835. [576] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP2.MatrixX. -jacobiSVD' on page 577 undefined on input line 103881. +jacobiSVD' on page 577 undefined on input line 103880. [577] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion.t -oAxisAngle' on page 578 undefined on input line 104334. +oAxisAngle' on page 578 undefined on input line 104333. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Vector3' on -page 578 undefined on input line 104354. +page 578 undefined on input line 104353. [578] LaTeX Warning: Hyper reference `yade.plot:yade.plot.HP2.Real' on page 579 undef -ined on input line 104430. +ined on input line 104429. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion' -on page 579 undefined on input line 104442. +on page 579 undefined on input line 104441. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Quaternion' -on page 579 undefined on input line 104454. +on page 579 undefined on input line 104453. LaTeX Warning: Hyper reference `yade.plot:yade.plot.HP2.Real' on page 579 undef -ined on input line 104466. +ined on input line 104465. 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[593] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorXc' on - page 594 undefined on input line 108715. + page 594 undefined on input line 108714. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorXc' on - page 594 undefined on input line 108742. + page 594 undefined on input line 108741. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.VectorXc' on - page 594 undefined on input line 108754. + page 594 undefined on input line 108753. [594] -Underfull \hbox (badness 10000) in paragraph at lines 109234--109237 +Underfull \hbox (badness 10000) in paragraph at lines 109233--109236 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [595] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.Matrix3.comp -uteUnitaryPositive' on page 596 undefined on input line 109356. +uteUnitaryPositive' on page 596 undefined on input line 109355. 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[599] [600] [601] -Underfull \hbox (badness 10000) in paragraph at lines 110967--110969 +Underfull \hbox (badness 10000) in paragraph at lines 110966--110968 \TU/lmr/m/n/10 torX)r2=VectorX() [, (VectorX)r3=VectorX() [, (VectorX)r4=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 110967--110969 +Underfull \hbox (badness 10000) in paragraph at lines 110966--110968 \TU/lmr/m/n/10 torX)r5=VectorX() [, (VectorX)r6=VectorX() [, (VectorX)r7=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 111089--111092 +Underfull \hbox (badness 10000) in paragraph at lines 111088--111091 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.MatrixX.comp -uteUnitaryPositive' on page 602 undefined on input line 111211. +uteUnitaryPositive' on page 602 undefined on input line 111210. 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[630] LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 631 undefined on input line 118421. + on page 631 undefined on input line 118420. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Vector3' - on page 631 undefined on input line 118425. + on page 631 undefined on input line 118424. LaTeX Warning: Hyper reference `yade.minieigenHP:yade._minieigenHP.HP1.Matrix3' - on page 631 undefined on input line 118429. + on page 631 undefined on input line 118428. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Cell.hSize' on page 6 -31 undefined on input line 118429. +31 undefined on input line 118428. [631] LaTeX Warning: Hyper reference `yade.pack:yade._packSpheres.SpherePack.appliedP -sdScaling' on page 632 undefined on input line 118507. +sdScaling' on page 632 undefined on input line 118506. 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[634] @@ -54237,69 +54159,69 @@ [638] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InsertionSortCollider -' on page 639 undefined on input line 120261. +' on page 639 undefined on input line 120260. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Bound' on page 639 un -defined on input line 120261. +defined on input line 120260. [639] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body' on page 640 und -efined on input line 120340. +efined on input line 120339. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body' on page 640 und -efined on input line 120353. +efined on input line 120352. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BoundDispatcher.targe -tInterv' on page 640 undefined on input line 120379. +tInterv' on page 640 undefined on input line 120378. LaTeX Warning: Hyper reference `yade.plot:yade.plot.Vector2' on page 640 undefi -ned on input line 120437. +ned on input line 120436. 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[641] LaTeX Font Warning: Font shape `TU/lmr/m/scit' undefined -(Font) using `TU/lmr/m/scsl' instead on input line 120860. +(Font) using `TU/lmr/m/scsl' instead on input line 120859. LaTeX Font Warning: Font shape `TU/lmr/m/scit' undefined -(Font) using `TU/lmr/m/scsl' instead on input line 121000. +(Font) using `TU/lmr/m/scsl' instead on input line 120999. [642] @@ -54307,619 +54229,619 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 643 undefined on input line 121140. +on page 643 undefined on input line 121139. 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[643] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 644 undefined on input line 121289. +on page 644 undefined on input line 121288. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 644 undefined on input line 121302. +on page 644 undefined on input line 121301. -Underfull \hbox (badness 10000) in paragraph at lines 121300--121303 +Underfull \hbox (badness 10000) in paragraph at lines 121299--121302 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.id' on page 644 -undefined on input line 121328. +undefined on input line 121327. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 644 undefined on input line 121354. +age 644 undefined on input line 121353. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.IGeomFunctor' on page - 645 undefined on input line 121626. + 645 undefined on input line 121625. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121626. +_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121625. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Bo1_Cylinder_Aabb.aab -bEnlargeFactor' on page 645 undefined on input line 121626. +bEnlargeFactor' on page 645 undefined on input line 121625. [645] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Aabb' on page 646 und -efined on input line 121714. +efined on input line 121713. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.DeformableElement' on - page 646 undefined on input line 121714. + page 646 undefined on input line 121713. 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[646] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Aabb' on page 647 und -efined on input line 121900. +efined on input line 121899. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FluidDomainBbox' on p -age 647 undefined on input line 121900. +age 647 undefined on input line 121899. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Aabb' on page 647 und -efined on input line 121984. +efined on input line 121983. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridConnection' on pa -ge 647 undefined on input line 121984. +ge 647 undefined on input line 121983. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Aabb' on page 647 und -efined on input line 122081. +efined on input line 122080. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet' on page 647 - undefined on input line 122081. + undefined on input line 122080. [647] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Aabb' on page 648 und -efined on input line 122165. +efined on input line 122164. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Node' on page 648 und -efined on input line 122165. +efined on input line 122164. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.IGeomFunctor' on page - 648 undefined on input line 122179. + 648 undefined on input line 122178. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Sphere_Sphere_ScG -eom.interactionDetectionFactor' on page 648 undefined on input line 122179. +eom.interactionDetectionFactor' on page 648 undefined on input line 122178. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Bo1_Sphere_Aabb.aabbE -nlargeFactor' on page 648 undefined on input line 122179. +nlargeFactor' on page 648 undefined on input line 122178. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Wall' on page 650 und -efined on input line 122634. +efined on input line 122633. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.NewtonIntegrator' on -page 650 undefined on input line 122728. +page 650 undefined on input line 122727. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Bound' on page 650 un -defined on input line 122741. +defined on input line 122740. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.bound' on page 6 -50 undefined on input line 122754. +50 undefined on input line 122753. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.bound' on page 6 -50 undefined on input line 122754. +50 undefined on input line 122753. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.isStandalone' on - page 650 undefined on input line 122767. + page 650 undefined on input line 122766. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.isClump' on page - 650 undefined on input line 122767. + 650 undefined on input line 122766. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.isClumpMember' o -n page 650 undefined on input line 122767. +n page 650 undefined on input line 122766. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.appendC -lumped' on page 650 undefined on input line 122770. +lumped' on page 650 undefined on input line 122769. -Underfull \hbox (badness 10000) in paragraph at lines 122796--122799 +Underfull \hbox (badness 10000) in paragraph at lines 122795--122798 \TU/lmr/m/n/10 Whether this body will be moved by forces. (In c++, use LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.dynamic' on page - 650 undefined on input line 122811. + 650 undefined on input line 122810. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.bounded' on page - 650 undefined on input line 122811. + 650 undefined on input line 122810. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.aspherical' on p -age 650 undefined on input line 122811. +age 650 undefined on input line 122810. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Collider' on page 650 - undefined on input line 122824. + undefined on input line 122823. [650] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.bound' on page 6 -51 undefined on input line 122891. +51 undefined on input line 122890. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.bound' on page 6 -51 undefined on input line 122917. +51 undefined on input line 122916. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.groupMask' on pa -ge 651 undefined on input line 122943. +ge 651 undefined on input line 122942. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.enableR -edirection' on page 653 undefined on input line 123339. +edirection' on page 653 undefined on input line 123338. [653] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body' on page 654 und -efined on input line 123473. +efined on input line 123472. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body' on page 654 und -efined on input line 123486. +efined on input line 123485. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BoundDispatcher.targe -tInterv' on page 654 undefined on input line 123512. +tInterv' on page 654 undefined on input line 123511. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BoundFunctor' on page - 654 undefined on input line 123545. + 654 undefined on input line 123544. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 654 undefined on input line 123626. +on page 654 undefined on input line 123625. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 654 undefined on input line 123639. +on page 654 undefined on input line 123638. -Underfull \hbox (badness 10000) in paragraph at lines 123637--123640 +Underfull \hbox (badness 10000) in paragraph at lines 123636--123639 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 654 undefined on input line 123691. +age 654 undefined on input line 123690. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ParallelEngine' on pa -ge 654 undefined on input line 123691. +ge 654 undefined on input line 123690. [654] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InsertionSortCollider -.targetInterv' on page 655 undefined on input line 123717. +.targetInterv' on page 655 undefined on input line 123716. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 655 undefined on input line 123911. +on page 655 undefined on input line 123910. -Underfull \hbox (badness 10000) in paragraph at lines 123909--123912 +Underfull \hbox (badness 10000) in paragraph at lines 123908--123911 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [655] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 656 undefined on input line 123937. +age 656 undefined on input line 123936. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ParallelEngine' on pa -ge 656 undefined on input line 123937. +ge 656 undefined on input line 123936. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 656 undefined on input line 123950. +on page 656 undefined on input line 123949. [656] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 657 undefined on input line 124234. +on page 657 undefined on input line 124233. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 657 undefined on input line 124247. +on page 657 undefined on input line 124246. -Underfull \hbox (badness 10000) in paragraph at lines 124245--124248 +Underfull \hbox (badness 10000) in paragraph at lines 124244--124247 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [657] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 658 undefined on input line 124429. +age 658 undefined on input line 124428. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ParallelEngine' on pa -ge 658 undefined on input line 124429. +ge 658 undefined on input line 124428. 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[659] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom_Capillary -Phys_Capillarity' on page 660 undefined on input line 124911. +Phys_Capillarity' on page 660 undefined on input line 124910. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom_Capillary -Phys_Capillarity.capillaryPressure' on page 660 undefined on input line 124947. +Phys_Capillarity.capillaryPressure' on page 660 undefined on input line 124946. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CapillaryPhys.vMenisc -us' on page 660 undefined on input line 125068. +us' on page 660 undefined on input line 125067. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ScGeom.normal' on pag -e 660 undefined on input line 125081. +e 660 undefined on input line 125080. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CapillaryPhys.nn11' o -n page 660 undefined on input line 125081. +n page 660 undefined on input line 125080. 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[670] LaTeX Warning: Hyper reference `user:clumpsection' on page 671 undefined on inp -ut line 127449. +ut line 127448. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FrictMat' on page 671 - undefined on input line 127587. + undefined on input line 127586. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom6D_CohFric -tPhys_CohesionMoment' on page 671 undefined on input line 127587. +tPhys_CohesionMoment' on page 671 undefined on input line 127586. [671] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MaterialContainer.app -end' on page 672 undefined on input line 127731. +end' on page 672 undefined on input line 127730. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_CohFrictMat_CohFr -ictMat_CohFrictPhys.setCohesionNow' on page 672 undefined on input line 127744. +ictMat_CohFrictPhys.setCohesionNow' on page 672 undefined on input line 127743. 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[687] @@ -55601,8442 +55523,8442 @@ [689] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MaterialContainer.app -end' on page 690 undefined on input line 131935. +end' on page 690 undefined on input line 131934. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MaterialContainer' on - page 690 undefined on input line 131948. + page 690 undefined on input line 131947. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.State' on page 690 un -defined on input line 131963. +defined on input line 131962. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Material' on page 690 - undefined on input line 131963. + undefined on input line 131962. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Body.state' on page 6 -90 undefined on input line 131963. +90 undefined on input line 131962. 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[809] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.IGeomFunctor' on page - 810 undefined on input line 162351. + 810 undefined on input line 162350. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 810 undefined on input line 162419. +on page 810 undefined on input line 162418. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.timingEnabled' -on page 810 undefined on input line 162432. +on page 810 undefined on input line 162431. -Underfull \hbox (badness 10000) in paragraph at lines 162430--162433 +Underfull \hbox (badness 10000) in paragraph at lines 162429--162432 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.InteractionLoop' on p -age 810 undefined on input line 162471. +age 810 undefined on input line 162470. 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[817] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNodeGeom6D' on pa -ge 818 undefined on input line 164129. +ge 818 undefined on input line 164128. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GridNode' on page 818 - undefined on input line 164129. + undefined on input line 164128. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Sphere_ChainedCyl -inder_CylScGeom' on page 818 undefined on input line 164139. +inder_CylScGeom' on page 818 undefined on input line 164138. LaTeX Warning: Citation `references:mcnamara2008' on page 818 undefined on inpu -t line 164173. +t line 164172. [818] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ScGeom6D.twistCreep' -on page 819 undefined on input line 164204. +on page 819 undefined on input line 164203. 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[923] LaTeX Warning: Citation `references:zhou1999536' on page 924 undefined on input - line 186556. + line 186555. LaTeX Warning: Citation `references:zhou1999536' on page 924 undefined on input - line 186569. + line 186568. LaTeX Warning: Citation `references:zhou1999536' on page 924 undefined on input - line 186569. + line 186568. LaTeX Warning: Citation `references:zhou1999536' on page 924 undefined on input - line 186569. + line 186568. [924] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom_ImplicitL -ubricationPhys.resolution' on page 925 undefined on input line 186660. +ubricationPhys.resolution' on page 925 undefined on input line 186659. LaTeX Warning: Citation `references:luding2008' on page 925 undefined on input -line 186797. +line 186796. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MaterialContainer.app -end' on page 925 undefined on input line 186902. +end' on page 925 undefined on input line 186901. 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[934] [935] -Underfull \hbox (badness 10000) in paragraph at lines 189706--189708 +Underfull \hbox (badness 10000) in paragraph at lines 189705--189707 \TU/lmr/m/n/10 torX)r2=VectorX() [, (VectorX)r3=VectorX() [, (VectorX)r4=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 189706--189708 +Underfull \hbox (badness 10000) in paragraph at lines 189705--189707 \TU/lmr/m/n/10 torX)r5=VectorX() [, (VectorX)r6=VectorX() [, (VectorX)r7=Vector X() [, (Vec- [936] -Underfull \hbox (badness 10000) in paragraph at lines 189828--189831 +Underfull \hbox (badness 10000) in paragraph at lines 189827--189830 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that LaTeX Warning: Hyper reference `yade.plot:yade.plot.MatrixX.computeUnitaryPosit -ive' on page 937 undefined on input line 189950. +ive' on page 937 undefined on input line 189949. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialCompressionEn -gine.fixedPorosity' on page 1014 undefined on input line 207824. +gine.fixedPorosity' on page 1014 undefined on input line 207823. -Underfull \hbox (badness 7944) in paragraph at lines 207822--207825 +Underfull \hbox (badness 7944) in paragraph at lines 207821--207824 \TU/lmr/m/n/10 A special type of compaction with imposed final porosity \TU/lmr /m/it/10 TriaxialCompressio- LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.stressMask' on page 1014 undefined on input line 207863. +ler.stressMask' on page 1014 undefined on input line 207862. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.stressMask' on page 1014 undefined on input line 207876. +ler.stressMask' on page 1014 undefined on input line 207875. 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[1102] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet' on page 110 -3 undefined on input line 224508. +3 undefined on input line 224507. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FlowEngine' on page 1 -103 undefined on input line 224512. +103 undefined on input line 224511. LaTeX Warning: Citation `references:mani2013' on page 1103 undefined on input l -ine 224516. +ine 224515. LaTeX Warning: Hyper reference `prog:logging' on page 1103 undefined on input l -ine 224520. +ine 224519. -Underfull \hbox (badness 5475) in paragraph at lines 224523--224525 +Underfull \hbox (badness 5475) in paragraph at lines 224522--224524 []\TU/lmr/m/n/10 ENABLE_-MASK_-ARBITRARY: enable arbitrary precision of bitmask variables (only LaTeX Warning: Hyper reference `HighPrecisionReal:highprecisionreal' on page 11 -03 undefined on input line 224528. +03 undefined on input line 224527. 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LaTeX Warning: Hyper reference `prog:imglogging' on page 1113 undefined on inpu -t line 225370. +t line 225369. LaTeX Warning: Hyper reference `prog:debug-macros' on page 1113 undefined on in -put line 225370. +put line 225369. LaTeX Warning: Hyper reference `yade.log:yade._log.readConfigFile' on page 1113 - undefined on input line 225385. + undefined on input line 225384. LaTeX Warning: Hyper reference `yade.log:yade._log.saveConfigFile' on page 1113 - undefined on input line 225385. + undefined on input line 225384. LaTeX Warning: Hyper reference `yade.log:yade._log.defaultConfigFileName' on pa -ge 1113 undefined on input line 225385. +ge 1113 undefined on input line 225384. -Underfull \hbox (badness 10000) in paragraph at lines 225410--225412 +Underfull \hbox (badness 10000) in paragraph at lines 225409--225411 []|\TU/lmss/m/n/10 op- LaTeX Warning: Hyper reference `prog:debugging-a-class' on page 1113 undefined -on input line 225502. +on input line 225501. [1113] [1114] [1115] -Underfull \hbox (badness 6825) in paragraph at lines 225686--225690 +Underfull \hbox (badness 6825) in paragraph at lines 225685--225689 []|\TU/lmr/m/n/10 Creates logger static variable (with name -Underfull \hbox (badness 10000) in paragraph at lines 225691--225693 +Underfull \hbox (badness 10000) in paragraph at lines 225690--225692 []|\TU/lmtt/m/n/10 TEMPLATE_-CREATE_- -Underfull \hbox (badness 6825) in paragraph at lines 225694--225698 +Underfull \hbox (badness 6825) in paragraph at lines 225693--225697 []|\TU/lmr/m/n/10 Creates logger static variable (with name [1116] @@ -66040,711 +65962,710 @@ [1117] LaTeX Warning: Hyper reference `yade.log:yade._log.getMaxLevel' on page 1118 un -defined on input line 225784. +defined on input line 225783. [1118] LaTeX Warning: Hyper reference `installation:speed-up' on page 1119 undefined o -n input line 225858. +n input line 225857. -Underfull \hbox (badness 10000) in paragraph at lines 225907--225909 +Underfull \hbox (badness 10000) in paragraph at lines 225906--225908 []\TU/lmr/m/n/10 Inside \TU/lmtt/m/n/10 O.engines \TU/lmr/m/n/10 there has to b e a call at the end of the loop to LaTeX Warning: Hyper reference `gitrepo:yade-gitrepo-label' on page 1119 undefi -ned on input line 225916. +ned on input line 225915. [1119] LaTeX Warning: Hyper reference `prog:yade-class-base-doc' on page 1120 undefine -d on input line 225988. +d on input line 225987. [1120] LaTeX Warning: Hyper reference `prog:yade-class-base-doc' on page 1121 undefine -d on input line 226006. +d on input line 226005. LaTeX Warning: Hyper reference `yade.wrapper:inheritancegraphglobalengine' on p -age 1121 undefined on input line 226068. +age 1121 undefined on input line 226067. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable' on page - 1129 undefined on input line 226756. + 1129 undefined on input line 226755. -Underfull \hbox (badness 10000) in paragraph at lines 226755--226757 +Underfull \hbox (badness 10000) in paragraph at lines 226754--226756 []\TU/lmr/m/n/10 Yade also provides callback for before/after (de) serializatio n, virtual functions \TU/lmr/m/it/10 Serial- -Underfull \hbox (badness 10000) in paragraph at lines 226755--226757 +Underfull \hbox (badness 10000) in paragraph at lines 226754--226756 \TU/lmr/m/it/10 izable::preProcessAttributes \TU/lmr/m/n/10 and \TU/lmr/m/it/10 Serializable::postProcessAttributes\TU/lmr/m/n/10 , which receive one \TU/lmtt /m/n/10 bool LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Facet' on page 1129 u -ndefined on input line 226764. +ndefined on input line 226763. 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LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.pyGenericPotential' o -n page 1160 undefined on input line 228846. +n page 1160 undefined on input line 228845. LaTeX Warning: Hyper reference `prog:yade-class-base-doc' on page 1160 undefine -d on input line 228855. +d on input line 228854. LaTeX Warning: Hyper reference `yade.minieigenHP:' on page 1160 undefined on in -put line 228876. +put line 228875. LaTeX Warning: Hyper reference `HighPrecisionReal:highprecisionreal' on page 11 -60 undefined on input line 228876. +60 undefined on input line 228875. [1160] LaTeX Warning: Hyper reference `prog:yade-class-base-doc' on page 1161 undefine -d on input line 228890. +d on input line 228889. [1161] [1162] LaTeX Warning: Hyper reference `prog:yade-class-base-doc' on page 1163 undefine -d on input line 229085. +d on input line 229084. [1163] [1164] LaTeX Warning: Hyper reference `gitrepo:yade-rebasing' on page 1165 undefined o -n input line 229244. +n input line 229243. [1165] @@ -67392,265 +67311,265 @@ Chapter 4. LaTeX Warning: Hyper reference `formulation:chapter-formulation' on page 1169 u -ndefined on input line 229507. +ndefined on input line 229506. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling' on page - 1169 undefined on input line 229515. + 1169 undefined on input line 229514. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling' on page - 1169 undefined on input line 229519. + 1169 undefined on input line 229518. LaTeX Warning: Citation `publications:kunhappan2017' on page 1169 undefined on -input line 229529. +input line 229528. LaTeX Warning: Citation `publications:kunhappan2018' on page 1169 undefined on -input line 229529. +input line 229528. -Underfull \hbox (badness 7907) in paragraph at lines 229534--229537 +Underfull \hbox (badness 7907) in paragraph at lines 229533--229536 \TU/lmr/m/n/10 A number of example scripts can be found in Yade sources, see [] \TU/lmr/bx/n/10 ‘the OpenFoam -Underfull \hbox (badness 10000) in paragraph at lines 229542--229544 +Underfull \hbox (badness 10000) in paragraph at lines 229541--229543 []\TU/lmr/m/n/10 An older version of the coupling, which was using OpenFoam6, i s archived -Underfull \hbox (badness 10000) in paragraph at lines 229542--229544 +Underfull \hbox (badness 10000) in paragraph at lines 229541--229543 \TU/lmr/m/n/10 in branch []\TU/lmr/bx/n/10 ‘FOAM6couplingArchive\TU/lmr/m/n/10 ,:yref:\TU/lmr/m/it/10 aver ageDrag\TU/lmr/m/n/10 ), @@ -71052,114 +70971,114 @@ [334] [335] [336] -Underfull \hbox (badness 10000) in paragraph at lines 54392--54395 +Underfull \hbox (badness 10000) in paragraph at lines 54391--54394 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [337] -Underfull \hbox (badness 10000) in paragraph at lines 54622--54625 +Underfull \hbox (badness 10000) in paragraph at lines 54621--54624 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [338] -Underfull \hbox (badness 10000) in paragraph at lines 54854--54857 +Underfull \hbox (badness 10000) in paragraph at lines 54853--54856 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [339] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 340 undefined on input line 54941. +ge 340 undefined on input line 54940. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 340 undefined on input line 54941. +ge 340 undefined on input line 54940. [340] -Underfull \hbox (badness 10000) in paragraph at lines 55115--55118 +Underfull \hbox (badness 10000) in paragraph at lines 55114--55117 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 341 undefined on input line 55195. +ge 341 undefined on input line 55194. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 341 undefined on input line 55234. +ge 341 undefined on input line 55233. [341] Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 55422--55425 +Underfull \hbox (badness 10000) in paragraph at lines 55421--55424 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [342] -Underfull \hbox (badness 10000) in paragraph at lines 55597--55600 +Underfull \hbox (badness 10000) in paragraph at lines 55596--55599 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [343] -Underfull \hbox (badness 10000) in paragraph at lines 55759--55762 +Underfull \hbox (badness 10000) in paragraph at lines 55758--55761 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [344] -Underfull \hbox (badness 10000) in paragraph at lines 55999--56002 +Underfull \hbox (badness 10000) in paragraph at lines 55998--56001 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [345] -Underfull \hbox (badness 10000) in paragraph at lines 56265--56268 +Underfull \hbox (badness 10000) in paragraph at lines 56264--56267 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [346] -Underfull \hbox (badness 10000) in paragraph at lines 56453--56456 +Underfull \hbox (badness 10000) in paragraph at lines 56452--56455 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [347] [348] -Underfull \hbox (badness 10000) in paragraph at lines 56765--56768 +Underfull \hbox (badness 10000) in paragraph at lines 56764--56767 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 56914--56917 +Underfull \hbox (badness 10000) in paragraph at lines 56913--56916 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [349] -Underfull \hbox (badness 10000) in paragraph at lines 57086--57089 +Underfull \hbox (badness 10000) in paragraph at lines 57085--57088 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [350] -Underfull \hbox (badness 10000) in paragraph at lines 57239--57242 +Underfull \hbox (badness 10000) in paragraph at lines 57238--57241 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [351] -Underfull \hbox (badness 10000) in paragraph at lines 57405--57408 +Underfull \hbox (badness 10000) in paragraph at lines 57404--57407 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [352] -Underfull \hbox (badness 10000) in paragraph at lines 57571--57574 +Underfull \hbox (badness 10000) in paragraph at lines 57570--57573 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 57737--57740 +Underfull \hbox (badness 10000) in paragraph at lines 57736--57739 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [353] -Underfull \hbox (badness 10000) in paragraph at lines 57903--57906 +Underfull \hbox (badness 10000) in paragraph at lines 57902--57905 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -71168,11 +71087,11 @@ [356] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58279. +_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58278. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58381. +_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58380. [357] @@ -71182,15 +71101,15 @@ [361] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Sphere2AABB' on page -362 undefined on input line 59483. +362 undefined on input line 59482. -Underfull \hbox (badness 10000) in paragraph at lines 59665--59668 +Underfull \hbox (badness 10000) in paragraph at lines 59664--59667 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [362] -Underfull \hbox (badness 10000) in paragraph at lines 59805--59805 +Underfull \hbox (badness 10000) in paragraph at lines 59804--59804 \TU/lmr/m/it/10 Connection_-GridConnection_-GridCoGridCoGeom[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Ig2_-GridConnection_-PFacet_-ScGeom[][]\TU/lmr/m/n/10 , [ ][]\TU/lmr/m/it/10 Ig2_- @@ -71209,11 +71128,11 @@ [374] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ScGridCoGeom6D' on pa -ge 375 undefined on input line 61942. +ge 375 undefined on input line 61941. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GricConnection' on pa -ge 375 undefined on input line 61942. +ge 375 undefined on input line 61941. [375] @@ -71226,7 +71145,7 @@ [382] [383] [384] -Underfull \hbox (badness 10000) in paragraph at lines 63869--63872 +Underfull \hbox (badness 10000) in paragraph at lines 63868--63871 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -71235,14 +71154,14 @@ [387] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CohFrictMat.isCohesiv -e`=``True`' on page 388 undefined on input line 64323. +e`=``True`' on page 388 undefined on input line 64322. [388] [389] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FrictMatCDMExt' on pa -ge 390 undefined on input line 64703. +ge 390 undefined on input line 64702. [390] @@ -71251,7 +71170,7 @@ [393] [394] -LaTeX Warning: Command \u invalid in math mode on input line 65802. +LaTeX Warning: Command \u invalid in math mode on input line 65801. Missing character: There is no ̆ ("306) in font eurm7! @@ -71261,37 +71180,37 @@ [398] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionShapeParameter' on page 399 undefined on input line 66642. +s.xSectionShapeParameter' on page 399 undefined on input line 66641. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionScaleParameter' on page 399 undefined on input line 66655. +s.xSectionScaleParameter' on page 399 undefined on input line 66654. [399] [400] [401] -Underfull \hbox (badness 10000) in paragraph at lines 67305--67308 +Underfull \hbox (badness 10000) in paragraph at lines 67304--67307 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [402] -Underfull \hbox (badness 7504) in paragraph at lines 67393--67393 +Underfull \hbox (badness 7504) in paragraph at lines 67392--67392 \TU/lmr/m/it/10 ElPerfPl[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-L6Geom_- FrictPhys_-Linear[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-MultiScGeom_-Mu ltiFrictPhys_-CundallStrack[][]\TU/lmr/m/n/10 , -Underfull \hbox (badness 6188) in paragraph at lines 67393--67393 +Underfull \hbox (badness 6188) in paragraph at lines 67392--67392 [][]\TU/lmr/m/it/10 Law2_-SCG_-KnKsPhys_-KnKsLaw[][]\TU/lmr/m/n/10 , [][]\TU/lm r/m/it/10 Law2_-ScGeom6D_-CohFrictPhys_-CohesionMoment[][]\TU/lmr/m/n/10 , [][] \TU/lmr/m/it/10 Law2_-Sc- -Underfull \hbox (badness 10000) in paragraph at lines 67393--67393 +Underfull \hbox (badness 10000) in paragraph at lines 67392--67392 \TU/lmr/m/it/10 Geom6D_-InelastCohFrictPhys_-CohesionMoment[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-ScGeom_-BubblePhys_-Bubble[][]\TU/lmr/m/n/10 , [][]\ TU/lmr/m/it/10 Law2_-Sc- -Underfull \hbox (badness 10000) in paragraph at lines 67393--67393 +Underfull \hbox (badness 10000) in paragraph at lines 67392--67392 \TU/lmr/m/it/10 Strack[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-ScGeom_-Wi rePhys_-WirePM[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-ScGridCoGeom_-CohF rictPhys_-CundallStrack[][]\TU/lmr/m/n/10 , @@ -71301,21 +71220,21 @@ [405] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridConnection' on pa -ge 406 undefined on input line 67927. +ge 406 undefined on input line 67926. [406] [407] -Underfull \hbox (badness 10000) in paragraph at lines 68326--68330 +Underfull \hbox (badness 10000) in paragraph at lines 68325--68329 \TU/lmr/m/n/10 Applies [][]\TU/lmr/m/it/10 Law2_-ScGeom_-FrictPhys_-CundallStra ck[][] \TU/lmr/m/n/10 at each contact point of a LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_Dem3DofGeom_Fric -tPhys_Basic' on page 408 undefined on input line 68500. +tPhys_Basic' on page 408 undefined on input line 68499. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Dem3DofGeom' on page -408 undefined on input line 68500. +408 undefined on input line 68499. [408] @@ -71323,7 +71242,7 @@ LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom6D_CohFric tPhys_CohesionMoment.momentRotationLaw' on page 410 undefined on input line 687 -75. +74. [410] @@ -71334,7 +71253,7 @@ [415] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 416 und -efined on input line 69991. +efined on input line 69990. [416] @@ -71345,7 +71264,7 @@ [421] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 422 und -efined on input line 71305. +efined on input line 71304. [422] @@ -71354,13 +71273,13 @@ [425] [426] [427] -Underfull \hbox (badness 10000) in paragraph at lines 72697--72700 +Underfull \hbox (badness 10000) in paragraph at lines 72696--72699 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [428] [429] -Underfull \hbox (badness 10000) in paragraph at lines 73131--73134 +Underfull \hbox (badness 10000) in paragraph at lines 73130--73133 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -71369,7 +71288,7 @@ [432] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CapillaryTriaxialTest -' on page 433 undefined on input line 73633. +' on page 433 undefined on input line 73632. [433] @@ -71377,33 +71296,33 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 434 undefined on input line 73722. +ler.sigma_iso' on page 434 undefined on input line 73721. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 434 undefined on input line 73722. +ler.sigma_iso' on page 434 undefined on input line 73721. Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 434 undefined on input line 73723. +ler.sigma_iso' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.isAxisymetric' on page 434 undefined on input line 73723. +ler.isAxisymetric' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma1' on page 434 undefined on input line 73723. +ler.sigma1' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma2' on page 434 undefined on input line 73723. +ler.sigma2' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma3' on page 434 undefined on input line 73723. +ler.sigma3' on page 434 undefined on input line 73722. [434] @@ -71425,13 +71344,13 @@ [450] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CpmPhys.colorStrainRa -tio' on page 451 undefined on input line 77855. +tio' on page 451 undefined on input line 77854. [451] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.utils.fabricTensor' o -n page 452 undefined on input line 78139. +n page 452 undefined on input line 78138. [452] @@ -71440,7 +71359,7 @@ [455] LaTeX Warning: Hyper reference `yade.timing:' on page 456 undefined on input li -ne 79150. +ne 79149. [456] @@ -71467,13 +71386,18 @@ [462] LaTeX Warning: Hyper reference `yade.utils:yade.utils.setRefSe3' on page 463 un -defined on input line 80577. +defined on input line 80576. [463] [464] [465] +Underfull \hbox (badness 10000) in paragraph at lines 81414--81417 +\TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use +d if + [466] +[467] Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∇ (U+2207) in font [lmroman10-regular]:mapping=t @@ -71489,32 +71413,26 @@ Missing character: There is no ∇ (U+2207) in font [lmroman10-regular]:mapping=t ex-text;! -[467] - LaTeX Warning: Hyper reference `yade.utils:yade.utils.setRefSe3' on page 468 un -defined on input line 81667. +defined on input line 81911. [468] [469] -Underfull \hbox (badness 10000) in paragraph at lines 82158--82161 +[470] +Underfull \hbox (badness 10000) in paragraph at lines 82521--82524 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -[470] [471] [472] [473] -Underfull \hbox (badness 10000) in paragraph at lines 83326--83329 -\TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use -d if - [474] [475] [476] [477] [478] -Underfull \hbox (badness 10000) in paragraph at lines 83804--83806 +Underfull \hbox (badness 10000) in paragraph at lines 83803--83805 []\TU/lmr/m/n/10 Example: [][]examples/test/vtk-exporter/vtkExporter.py[][], [] []examples/test/unv- @@ -71540,28 +71458,29 @@ [489] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridNode' on page 490 - undefined on input line 85245. + undefined on input line 85244. [490] [491] [492] [493] +Overfull \vbox (3.483pt too high) detected at line 85792 + [494] -Underfull \hbox (badness 10000) in paragraph at lines 85824--85828 +Underfull \hbox (badness 10000) in paragraph at lines 85823--85827 []\TU/lmr/m/n/10 There is a c++ template function for interpolating on such seq uences in Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! - -[495] Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! +[495] [496] Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! @@ -71583,43 +71502,43 @@ ex-text;! [500] -Underfull \hbox (badness 10000) in paragraph at lines 86920--86922 +Underfull \hbox (badness 10000) in paragraph at lines 86919--86921 \TU/lmr/m/n/10 argument in radians. Depending on compilation options wraps [501] [502] [503] -Underfull \hbox (badness 10000) in paragraph at lines 87263--87265 +Underfull \hbox (badness 10000) in paragraph at lines 87262--87264 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 87263--87265 +Underfull \hbox (badness 10000) in paragraph at lines 87262--87264 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps -[504] -Underfull \hbox (badness 7415) in paragraph at lines 87416--87418 +Underfull \hbox (badness 7415) in paragraph at lines 87415--87417 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of +[504] [505] [506] -Underfull \hbox (badness 5374) in paragraph at lines 87824--87826 +Underfull \hbox (badness 5374) in paragraph at lines 87823--87825 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 6125) in paragraph at lines 87824--87826 +Underfull \hbox (badness 6125) in paragraph at lines 87823--87825 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps [507] [508] [509] -Underfull \hbox (badness 7451) in paragraph at lines 88338--88340 +Underfull \hbox (badness 7451) in paragraph at lines 88337--88339 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the spherical harmonic polynomial of the or ders \TU/lmtt/m/n/10 l \TU/lmr/m/n/10 (unsigned -Underfull \hbox (badness 10000) in paragraph at lines 88338--88340 +Underfull \hbox (badness 10000) in paragraph at lines 88337--88339 \TU/lmr/m/n/10 <[][]$[][][][][] [] [] [] [][][] [] [][][][][] [] [][][] [] [][] [] [] [][][][] [] [] [] [][] [] [] [] [][][][] [] [][][][] [] [][][] [] [][][][ ] [] [][][][] [] [][][][][][][] [] @@ -71631,104 +71550,105 @@ ex-text;! [513] -Underfull \hbox (badness 10000) in paragraph at lines 89126--89128 +Underfull \hbox (badness 10000) in paragraph at lines 89125--89127 \TU/lmr/m/n/10 argument in radians. Depending on compilation options wraps [514] [515] -[516] -Underfull \hbox (badness 10000) in paragraph at lines 89469--89471 +Underfull \hbox (badness 10000) in paragraph at lines 89468--89470 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 89469--89471 +Underfull \hbox (badness 10000) in paragraph at lines 89468--89470 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps -Underfull \hbox (badness 7415) in paragraph at lines 89622--89624 +[516] +Underfull \hbox (badness 7415) in paragraph at lines 89621--89623 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of [517] [518] [519] -Underfull \hbox (badness 5374) in paragraph at lines 90030--90032 +Underfull \hbox (badness 5374) in paragraph at lines 90029--90031 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 6125) in paragraph at lines 90030--90032 +Underfull \hbox (badness 6125) in paragraph at lines 90029--90031 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps [520] [521] [522] -Underfull \hbox (badness 7451) in paragraph at lines 90544--90546 +Underfull \hbox (badness 7451) in paragraph at lines 90543--90545 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the spherical harmonic polynomial of the or ders \TU/lmtt/m/n/10 l \TU/lmr/m/n/10 (unsigned -Underfull \hbox (badness 10000) in paragraph at lines 90544--90546 +Underfull \hbox (badness 10000) in paragraph at lines 90543--90545 \TU/lmr/m/n/10 <[][]$[][][][][] [] [] [] [][][] [] [][][][][] [] [][][] [] [][] [] [] [][][][] [] [] [] [][] [] [] [] [][][][] [] [][][][] [] [][][] [] [][][][ ] [] [][][][] [] [][][][][][][] [] [523] -[524] Missing character: There is no π (U+03C0) in font [lmroman10-regular]:mapping=t ex-text;! + +[524] Missing character: There is no ↔ (U+2194) in font [lmroman10-regular]:mapping=t ex-text;! [525] -Underfull \hbox (badness 10000) in paragraph at lines 91152--91154 +Underfull \hbox (badness 10000) in paragraph at lines 91151--91153 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic cosine of the \TU/lmt t/m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91152--91154 +Underfull \hbox (badness 10000) in paragraph at lines 91151--91153 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps [526] -Underfull \hbox (badness 10000) in paragraph at lines 91228--91230 +Underfull \hbox (badness 10000) in paragraph at lines 91227--91229 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic sine of the \TU/lmtt/ m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91228--91230 +Underfull \hbox (badness 10000) in paragraph at lines 91227--91229 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps -[527] -Underfull \hbox (badness 10000) in paragraph at lines 91304--91306 +Underfull \hbox (badness 10000) in paragraph at lines 91303--91305 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic tangent of the \TU/lm tt/m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91304--91306 +Underfull \hbox (badness 10000) in paragraph at lines 91303--91305 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps +[527] [528] -Underfull \hbox (badness 10000) in paragraph at lines 91527--91529 +Underfull \hbox (badness 10000) in paragraph at lines 91526--91528 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 91527--91529 +Underfull \hbox (badness 10000) in paragraph at lines 91526--91528 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps [529] -Underfull \hbox (badness 10000) in paragraph at lines 91682--91684 +Underfull \hbox (badness 10000) in paragraph at lines 91681--91683 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of -Underfull \hbox (badness 10000) in paragraph at lines 91682--91684 +Underfull \hbox (badness 10000) in paragraph at lines 91681--91683 \TU/lmr/m/n/10 the arguments \TU/lmtt/m/n/10 x \TU/lmr/m/n/10 and \TU/lmtt/m/n/ 10 y\TU/lmr/m/n/10 . Depending on compilation options wraps [530] [531] [532] -Underfull \hbox (badness 10000) in paragraph at lines 92191--92193 +Underfull \hbox (badness 10000) in paragraph at lines 92190--92192 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 10000) in paragraph at lines 92191--92193 +Underfull \hbox (badness 10000) in paragraph at lines 92190--92192 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps @@ -71736,25 +71656,25 @@ [534] [535] [536] -Underfull \hbox (badness 10000) in paragraph at lines 92802--92804 +Underfull \hbox (badness 10000) in paragraph at lines 92801--92803 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the hyperbolic tangent of the \TU/lmtt/m /n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 92802--92804 +Underfull \hbox (badness 10000) in paragraph at lines 92801--92803 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps [537] [538] [539] [540] -Underfull \hbox (badness 10000) in paragraph at lines 93932--93935 +Underfull \hbox (badness 10000) in paragraph at lines 93931--93934 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [541] [542] [543] -Underfull \hbox (badness 10000) in paragraph at lines 94795--94798 +Underfull \hbox (badness 10000) in paragraph at lines 94794--94797 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71762,7 +71682,7 @@ [545] [546] [547] -Underfull \hbox (badness 10000) in paragraph at lines 95787--95790 +Underfull \hbox (badness 10000) in paragraph at lines 95786--95789 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71786,7 +71706,7 @@ [565] [566] [567] -Underfull \hbox (badness 10000) in paragraph at lines 101754--101757 +Underfull \hbox (badness 10000) in paragraph at lines 101753--101756 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71794,7 +71714,7 @@ [569] [570] [571] -Underfull \hbox (badness 10000) in paragraph at lines 102617--102620 +Underfull \hbox (badness 10000) in paragraph at lines 102616--102619 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71802,7 +71722,7 @@ [573] [574] [575] -Underfull \hbox (badness 10000) in paragraph at lines 103609--103612 +Underfull \hbox (badness 10000) in paragraph at lines 103608--103611 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71814,12 +71734,12 @@ [581] [582] [583] -Underfull \hbox (badness 10000) in paragraph at lines 105793--105795 +Underfull \hbox (badness 10000) in paragraph at lines 105792--105794 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Real)x=Real(“0”) [, (Real)y=Rea l(“0”) [, [584] -Underfull \hbox (badness 10000) in paragraph at lines 106253--106255 +Underfull \hbox (badness 10000) in paragraph at lines 106252--106254 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Complex)x=Complex(“0”,”0”) [, ( Com- @@ -71833,7 +71753,7 @@ [592] [593] [594] -Underfull \hbox (badness 10000) in paragraph at lines 109234--109237 +Underfull \hbox (badness 10000) in paragraph at lines 109233--109236 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71841,22 +71761,22 @@ [596] [597] [598] -Underfull \hbox (badness 10000) in paragraph at lines 110097--110100 +Underfull \hbox (badness 10000) in paragraph at lines 110096--110099 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [599] [600] [601] -Underfull \hbox (badness 10000) in paragraph at lines 110967--110969 +Underfull \hbox (badness 10000) in paragraph at lines 110966--110968 \TU/lmr/m/n/10 torX)r2=VectorX() [, (VectorX)r3=VectorX() [, (VectorX)r4=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 110967--110969 +Underfull \hbox (badness 10000) in paragraph at lines 110966--110968 \TU/lmr/m/n/10 torX)r5=VectorX() [, (VectorX)r6=VectorX() [, (VectorX)r7=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 111089--111092 +Underfull \hbox (badness 10000) in paragraph at lines 111088--111091 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -71892,7 +71812,7 @@ [631] LaTeX Warning: Hyper reference `yade.pack:yade.pack.SpherePack.makeCloud' on pa -ge 632 undefined on input line 118558. +ge 632 undefined on input line 118557. [632] @@ -71907,35 +71827,35 @@ [641] LaTeX Font Warning: Font shape `TU/lmr/m/scit' undefined -(Font) using `TU/lmr/m/scsl' instead on input line 120860. +(Font) using `TU/lmr/m/scsl' instead on input line 120859. LaTeX Font Warning: Font shape `TU/lmr/m/scit' undefined -(Font) using `TU/lmr/m/scsl' instead on input line 121000. +(Font) using `TU/lmr/m/scsl' instead on input line 120999. [642] Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 121151--121154 +Underfull \hbox (badness 10000) in paragraph at lines 121150--121153 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [643] -Underfull \hbox (badness 10000) in paragraph at lines 121300--121303 +Underfull \hbox (badness 10000) in paragraph at lines 121299--121302 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [644] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121524. +_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121523. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121626. +_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121625. @@ -71944,25 +71864,25 @@ [647] [648] [649] -Underfull \hbox (badness 10000) in paragraph at lines 122796--122799 +Underfull \hbox (badness 10000) in paragraph at lines 122795--122798 \TU/lmr/m/n/10 Whether this body will be moved by forces. (In c++, use [650] [651] [652] [653] -Underfull \hbox (badness 10000) in paragraph at lines 123637--123640 +Underfull \hbox (badness 10000) in paragraph at lines 123636--123639 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [654] -Underfull \hbox (badness 10000) in paragraph at lines 123909--123912 +Underfull \hbox (badness 10000) in paragraph at lines 123908--123911 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [655] [656] -Underfull \hbox (badness 10000) in paragraph at lines 124245--124248 +Underfull \hbox (badness 10000) in paragraph at lines 124244--124247 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -71970,7 +71890,7 @@ [658] [659] [660] -Underfull \hbox (badness 10000) in paragraph at lines 125241--125244 +Underfull \hbox (badness 10000) in paragraph at lines 125240--125243 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -71994,26 +71914,26 @@ [663] LaTeX Warning: Hyper reference `yade.utils:yade.utils.setRefSe3' on page 664 un -defined on input line 125782. +defined on input line 125781. [664] Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 126090--126093 +Underfull \hbox (badness 10000) in paragraph at lines 126089--126092 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [665] -Underfull \hbox (badness 10000) in paragraph at lines 126269--126272 +Underfull \hbox (badness 10000) in paragraph at lines 126268--126271 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [666] [667] [668] -Underfull \hbox (badness 10000) in paragraph at lines 127089--127092 +Underfull \hbox (badness 10000) in paragraph at lines 127088--127091 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72023,17 +71943,17 @@ [672] [673] [674] -Underfull \hbox (badness 10000) in paragraph at lines 128449--128452 +Underfull \hbox (badness 10000) in paragraph at lines 128448--128451 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [675] -Underfull \hbox (badness 10000) in paragraph at lines 128643--128646 +Underfull \hbox (badness 10000) in paragraph at lines 128642--128645 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [676] -Underfull \hbox (badness 10000) in paragraph at lines 128779--128782 +Underfull \hbox (badness 10000) in paragraph at lines 128778--128781 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t @@ -72047,18 +71967,18 @@ [680] [681] [682] -Underfull \hbox (badness 10000) in paragraph at lines 130244--130247 +Underfull \hbox (badness 10000) in paragraph at lines 130243--130246 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [683] [684] -Underfull \hbox (badness 10000) in paragraph at lines 130682--130685 +Underfull \hbox (badness 10000) in paragraph at lines 130681--130684 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [685] -Underfull \hbox (badness 10000) in paragraph at lines 130967--130970 +Underfull \hbox (badness 10000) in paragraph at lines 130966--130969 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- @@ -72067,118 +71987,118 @@ [688] [689] [690] -Underfull \hbox (badness 10000) in paragraph at lines 132076--132079 +Underfull \hbox (badness 10000) in paragraph at lines 132075--132078 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [691] -Underfull \hbox (badness 10000) in paragraph at lines 132316--132319 +Underfull \hbox (badness 10000) in paragraph at lines 132315--132318 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 132439--132442 +Underfull \hbox (badness 10000) in paragraph at lines 132438--132441 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [692] [693] -Underfull \hbox (badness 10000) in paragraph at lines 132806--132809 +Underfull \hbox (badness 10000) in paragraph at lines 132805--132808 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [694] -Underfull \hbox (badness 10000) in paragraph at lines 133100--133103 +Underfull \hbox (badness 10000) in paragraph at lines 133099--133102 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [695] -Underfull \hbox (badness 10000) in paragraph at lines 133354--133357 +Underfull \hbox (badness 10000) in paragraph at lines 133353--133356 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [696] -Underfull \hbox (badness 10000) in paragraph at lines 133483--133486 +Underfull \hbox (badness 10000) in paragraph at lines 133482--133485 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [697] [698] -Underfull \hbox (badness 10000) in paragraph at lines 133835--133838 +Underfull \hbox (badness 10000) in paragraph at lines 133834--133837 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [699] -Underfull \hbox (badness 10000) in paragraph at lines 134096--134099 +Underfull \hbox (badness 10000) in paragraph at lines 134095--134098 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [700] [701] -Underfull \hbox (badness 10000) in paragraph at lines 134361--134364 +Underfull \hbox (badness 10000) in paragraph at lines 134360--134363 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [702] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.castPart -icle' on page 703 undefined on input line 134644. +icle' on page 703 undefined on input line 134643. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.updatePr -ocList' on page 703 undefined on input line 134654. +ocList' on page 703 undefined on input line 134653. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.procList -' on page 703 undefined on input line 134659. +' on page 703 undefined on input line 134658. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.sumHydro -Force' on page 703 undefined on input line 134660. +Force' on page 703 undefined on input line 134659. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.exchange -DeltaT' on page 703 undefined on input line 134661. +DeltaT' on page 703 undefined on input line 134660. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.exchange -DeltaT' on page 703 undefined on input line 134714. +DeltaT' on page 703 undefined on input line 134713. -Underfull \hbox (badness 10000) in paragraph at lines 134781--134784 +Underfull \hbox (badness 10000) in paragraph at lines 134780--134783 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [703] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.exchange -DeltaT' on page 704 undefined on input line 134822. +DeltaT' on page 704 undefined on input line 134821. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.sumHydro -Force' on page 704 undefined on input line 134921. +Force' on page 704 undefined on input line 134920. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.particle -Data' on page 704 undefined on input line 135003. +Data' on page 704 undefined on input line 135002. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.particle -Data' on page 704 undefined on input line 135003. +Data' on page 704 undefined on input line 135002. [704] [705] -Underfull \hbox (badness 10000) in paragraph at lines 135315--135318 +Underfull \hbox (badness 10000) in paragraph at lines 135314--135317 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 135477--135480 +Underfull \hbox (badness 10000) in paragraph at lines 135476--135479 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [706] [707] -Underfull \hbox (badness 10000) in paragraph at lines 135782--135785 +Underfull \hbox (badness 10000) in paragraph at lines 135781--135784 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72186,22 +72106,22 @@ [709] [710] -LaTeX Warning: Command \c invalid in math mode on input line 136567. +LaTeX Warning: Command \c invalid in math mode on input line 136566. Missing character: There is no ̧ ("327) in font eurm7! -LaTeX Warning: Command \c invalid in math mode on input line 136580. +LaTeX Warning: Command \c invalid in math mode on input line 136579. Missing character: There is no ̧ ("327) in font eurm7! [711] [712] -Underfull \hbox (badness 10000) in paragraph at lines 136949--136952 +Underfull \hbox (badness 10000) in paragraph at lines 136948--136951 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.enableR -edirection`=True. :ydefault:`false' on page 713 undefined on input line 136992. +edirection`=True. :ydefault:`false' on page 713 undefined on input line 136991. @@ -72210,7 +72130,7 @@ [715] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CpmPhys.colorStrainRa -tio' on page 716 undefined on input line 137797. +tio' on page 716 undefined on input line 137796. [716] @@ -72221,7 +72141,7 @@ [721] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.utils.fabricTensor' o -n page 722 undefined on input line 139378. +n page 722 undefined on input line 139377. [722] @@ -72229,78 +72149,78 @@ [724] [725] [726] -Underfull \hbox (badness 10000) in paragraph at lines 140559--140562 +Underfull \hbox (badness 10000) in paragraph at lines 140558--140561 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [727] [728] -Underfull \hbox (badness 10000) in paragraph at lines 141064--141067 +Underfull \hbox (badness 10000) in paragraph at lines 141063--141066 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [729] -Underfull \hbox (badness 10000) in paragraph at lines 141314--141317 +Underfull \hbox (badness 10000) in paragraph at lines 141313--141316 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [730] -Underfull \hbox (badness 10000) in paragraph at lines 141564--141567 +Underfull \hbox (badness 10000) in paragraph at lines 141563--141566 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [731] -Underfull \hbox (badness 10000) in paragraph at lines 141814--141817 +Underfull \hbox (badness 10000) in paragraph at lines 141813--141816 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [732] -Underfull \hbox (badness 10000) in paragraph at lines 142034--142037 +Underfull \hbox (badness 10000) in paragraph at lines 142033--142036 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GlobalStiffnessTimest -epper.viscEl' on page 733 undefined on input line 142108. +epper.viscEl' on page 733 undefined on input line 142107. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.utils.PWaveTimeStep' -on page 733 undefined on input line 142144. +on page 733 undefined on input line 142143. [733] -Underfull \hbox (badness 10000) in paragraph at lines 142196--142199 +Underfull \hbox (badness 10000) in paragraph at lines 142195--142198 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GlobalStiffnessTimest -epper.timestepSafetyCoefficient' on page 734 undefined on input line 142343. +epper.timestepSafetyCoefficient' on page 734 undefined on input line 142342. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Newton.gravity' on pa -ge 734 undefined on input line 142361. +ge 734 undefined on input line 142360. [734] -Underfull \hbox (badness 10000) in paragraph at lines 142410--142413 +Underfull \hbox (badness 10000) in paragraph at lines 142409--142412 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 142589--142592 +Underfull \hbox (badness 10000) in paragraph at lines 142588--142591 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [735] [736] [737] -Underfull \hbox (badness 10000) in paragraph at lines 143215--143218 +Underfull \hbox (badness 10000) in paragraph at lines 143214--143217 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [738] [739] -Underfull \hbox (badness 10000) in paragraph at lines 143926--143929 +Underfull \hbox (badness 10000) in paragraph at lines 143925--143928 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -72308,14 +72228,14 @@ [741] [742] [743] -Underfull \hbox (badness 10000) in paragraph at lines 144789--144792 +Underfull \hbox (badness 10000) in paragraph at lines 144788--144791 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [744] [745] [746] -Underfull \hbox (badness 10000) in paragraph at lines 145781--145784 +Underfull \hbox (badness 10000) in paragraph at lines 145780--145783 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -72339,7 +72259,7 @@ [764] [765] [766] -Underfull \hbox (badness 10000) in paragraph at lines 151748--151751 +Underfull \hbox (badness 10000) in paragraph at lines 151747--151750 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -72347,7 +72267,7 @@ [768] [769] [770] -Underfull \hbox (badness 10000) in paragraph at lines 152611--152614 +Underfull \hbox (badness 10000) in paragraph at lines 152610--152613 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -72355,7 +72275,7 @@ [772] [773] [774] -Underfull \hbox (badness 10000) in paragraph at lines 153603--153606 +Underfull \hbox (badness 10000) in paragraph at lines 153602--153605 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -72367,12 +72287,12 @@ [780] [781] [782] -Underfull \hbox (badness 10000) in paragraph at lines 155787--155789 +Underfull \hbox (badness 10000) in paragraph at lines 155786--155788 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Real)x=Real(“0”) [, (Real)y=Rea l(“0”) [, [783] -Underfull \hbox (badness 10000) in paragraph at lines 156247--156249 +Underfull \hbox (badness 10000) in paragraph at lines 156246--156248 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Complex)x=Complex(“0”,”0”) [, ( Com- @@ -72386,49 +72306,49 @@ [791] [792] [793] -Underfull \hbox (badness 10000) in paragraph at lines 159096--159099 +Underfull \hbox (badness 10000) in paragraph at lines 159095--159098 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [794] -Underfull \hbox (badness 10000) in paragraph at lines 159271--159274 +Underfull \hbox (badness 10000) in paragraph at lines 159270--159273 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [795] -Underfull \hbox (badness 10000) in paragraph at lines 159459--159462 +Underfull \hbox (badness 10000) in paragraph at lines 159458--159461 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [796] -Underfull \hbox (badness 10000) in paragraph at lines 159699--159702 +Underfull \hbox (badness 10000) in paragraph at lines 159698--159701 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! [797] -Underfull \hbox (badness 10000) in paragraph at lines 159939--159942 +Underfull \hbox (badness 10000) in paragraph at lines 159938--159941 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [798] [799] [800] -Underfull \hbox (badness 10000) in paragraph at lines 160421--160424 +Underfull \hbox (badness 10000) in paragraph at lines 160420--160423 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [801] -Underfull \hbox (badness 10000) in paragraph at lines 160475--160478 +Underfull \hbox (badness 10000) in paragraph at lines 160474--160477 \TU/lmr/m/n/10 Solve the 1D volume-averaged fluid momentum balance on the de- -Underfull \hbox (badness 10000) in paragraph at lines 160475--160478 +Underfull \hbox (badness 10000) in paragraph at lines 160474--160477 \TU/lmr/m/n/10 fined mesh ([][]\TU/lmr/m/it/10 nCell[][]\TU/lmr/m/n/10 , [][]\T U/lmr/m/it/10 deltaZ[][]\TU/lmr/m/n/10 ) from the volume-averaged solid profile s -Overfull \hbox (48.56209pt too wide) in paragraph at lines 160475--160478 +Overfull \hbox (48.56209pt too wide) in paragraph at lines 160474--160477 \TU/lmr/m/n/10 ([][]\TU/lmr/m/it/10 phiPart[][]\TU/lmr/m/n/10 ,:yref:\TU/lmr/m/ it/10 vxPart\TU/lmr/m/n/10 ,:yref:\TU/lmr/m/it/10 aver ageDrag\TU/lmr/m/n/10 ), @@ -72437,23 +72357,23 @@ [803] [804] [805] -Underfull \hbox (badness 10000) in paragraph at lines 161409--161412 +Underfull \hbox (badness 10000) in paragraph at lines 161408--161411 \TU/lmr/m/n/10 a list of data that will be saved. Can use veloc- [806] [807] [808] -Underfull \hbox (badness 10000) in paragraph at lines 162061--162064 +Underfull \hbox (badness 10000) in paragraph at lines 162060--162063 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [809] -Underfull \hbox (badness 10000) in paragraph at lines 162430--162433 +Underfull \hbox (badness 10000) in paragraph at lines 162429--162432 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [810] -Underfull \hbox (badness 10000) in paragraph at lines 162753--162756 +Underfull \hbox (badness 10000) in paragraph at lines 162752--162755 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72471,11 +72391,11 @@ [822] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ScGridCoGeom6D' on pa -ge 823 undefined on input line 165133. +ge 823 undefined on input line 165132. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GricConnection' on pa -ge 823 undefined on input line 165133. +ge 823 undefined on input line 165132. [823] @@ -72494,40 +72414,40 @@ [836] [837] [838] -Underfull \hbox (badness 10000) in paragraph at lines 168154--168157 +Underfull \hbox (badness 10000) in paragraph at lines 168153--168156 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.enableR -edirection`=True. :ydefault:`false' on page 839 undefined on input line 168197. +edirection`=True. :ydefault:`false' on page 839 undefined on input line 168196. [839] [840] -Underfull \hbox (badness 10000) in paragraph at lines 168500--168503 +Underfull \hbox (badness 10000) in paragraph at lines 168499--168502 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [841] [842] -Underfull \hbox (badness 10000) in paragraph at lines 169088--169091 +Underfull \hbox (badness 10000) in paragraph at lines 169087--169090 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [843] -Underfull \hbox (badness 10000) in paragraph at lines 169293--169296 +Underfull \hbox (badness 10000) in paragraph at lines 169292--169295 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [844] -Underfull \hbox (badness 10000) in paragraph at lines 169529--169532 +Underfull \hbox (badness 10000) in paragraph at lines 169528--169531 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [845] [846] -Underfull \hbox (badness 10000) in paragraph at lines 169759--169762 +Underfull \hbox (badness 10000) in paragraph at lines 169758--169761 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72535,14 +72455,14 @@ [848] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CohFrictMat.isCohesiv -e`=``True`' on page 849 undefined on input line 170260. +e`=``True`' on page 849 undefined on input line 170259. [849] [850] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FrictMatCDMExt' on pa -ge 851 undefined on input line 170640. +ge 851 undefined on input line 170639. [851] @@ -72551,7 +72471,7 @@ [854] [855] -LaTeX Warning: Command \u invalid in math mode on input line 171739. +LaTeX Warning: Command \u invalid in math mode on input line 171738. Missing character: There is no ̆ ("306) in font eurm7! @@ -72561,11 +72481,11 @@ [859] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionShapeParameter' on page 860 undefined on input line 172579. +s.xSectionShapeParameter' on page 860 undefined on input line 172578. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionScaleParameter' on page 860 undefined on input line 172592. +s.xSectionScaleParameter' on page 860 undefined on input line 172591. [860] @@ -72577,36 +72497,36 @@ [866] [867] [868] -Underfull \hbox (badness 10000) in paragraph at lines 174672--174675 +Underfull \hbox (badness 10000) in paragraph at lines 174671--174674 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [869] [870] -Underfull \hbox (badness 10000) in paragraph at lines 175064--175067 +Underfull \hbox (badness 10000) in paragraph at lines 175063--175066 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [871] [872] -Underfull \hbox (badness 10000) in paragraph at lines 175463--175466 +Underfull \hbox (badness 10000) in paragraph at lines 175462--175465 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [873] [874] -Underfull \hbox (badness 10000) in paragraph at lines 175834--175837 +Underfull \hbox (badness 10000) in paragraph at lines 175833--175836 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [875] -Underfull \hbox (badness 10000) in paragraph at lines 176178--176181 +Underfull \hbox (badness 10000) in paragraph at lines 176177--176180 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [876] [877] -Underfull \hbox (badness 10000) in paragraph at lines 176462--176465 +Underfull \hbox (badness 10000) in paragraph at lines 176461--176464 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72621,22 +72541,22 @@ [886] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridConnection' on pa -ge 887 undefined on input line 178473. +ge 887 undefined on input line 178472. [887] -Underfull \hbox (badness 10000) in paragraph at lines 178872--178876 +Underfull \hbox (badness 10000) in paragraph at lines 178871--178875 \TU/lmr/m/n/10 Applies [][]\TU/lmr/m/it/10 Law2_-ScGeom_-FrictPhys_-CundallStra ck[][] \TU/lmr/m/n/10 at each contact point of a [888] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_Dem3DofGeom_Fric -tPhys_Basic' on page 889 undefined on input line 179046. +tPhys_Basic' on page 889 undefined on input line 179045. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Dem3DofGeom' on page -889 undefined on input line 179046. +889 undefined on input line 179045. [889] @@ -72644,13 +72564,13 @@ LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom6D_CohFric tPhys_CohesionMoment.momentRotationLaw' on page 891 undefined on input line 179 -321. +320. [891] [892] [893] -Underfull \hbox (badness 10000) in paragraph at lines 179943--179946 +Underfull \hbox (badness 10000) in paragraph at lines 179942--179945 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72660,7 +72580,7 @@ [897] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 898 und -efined on input line 180747. +efined on input line 180746. [898] @@ -72671,7 +72591,7 @@ [903] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 904 und -efined on input line 182061. +efined on input line 182060. [904] @@ -72680,22 +72600,22 @@ [907] [908] [909] -Underfull \hbox (badness 10000) in paragraph at lines 183450--183453 +Underfull \hbox (badness 10000) in paragraph at lines 183449--183452 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [910] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 911 undefined on input line 183621. +ge 911 undefined on input line 183620. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 911 undefined on input line 183621. +ge 911 undefined on input line 183620. [911] -Underfull \hbox (badness 10000) in paragraph at lines 183795--183798 +Underfull \hbox (badness 10000) in paragraph at lines 183794--183797 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t @@ -72704,11 +72624,11 @@ [912] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 913 undefined on input line 183875. +ge 913 undefined on input line 183874. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 913 undefined on input line 183914. +ge 913 undefined on input line 183913. Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! @@ -72716,7 +72636,7 @@ [913] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet.axisAABE' on - page 914 undefined on input line 184203. + page 914 undefined on input line 184202. [914] @@ -72727,11 +72647,11 @@ [919] [920] [921] -Underfull \hbox (badness 10000) in paragraph at lines 185929--185932 +Underfull \hbox (badness 10000) in paragraph at lines 185928--185931 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 186078--186081 +Underfull \hbox (badness 10000) in paragraph at lines 186077--186080 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72743,37 +72663,37 @@ [927] [928] [929] -Underfull \hbox (badness 10000) in paragraph at lines 187973--187976 +Underfull \hbox (badness 10000) in paragraph at lines 187972--187975 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [930] [931] [932] -Underfull \hbox (badness 10000) in paragraph at lines 188836--188839 +Underfull \hbox (badness 10000) in paragraph at lines 188835--188838 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [933] [934] [935] -Underfull \hbox (badness 10000) in paragraph at lines 189706--189708 +Underfull \hbox (badness 10000) in paragraph at lines 189705--189707 \TU/lmr/m/n/10 torX)r2=VectorX() [, (VectorX)r3=VectorX() [, (VectorX)r4=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 189706--189708 +Underfull \hbox (badness 10000) in paragraph at lines 189705--189707 \TU/lmr/m/n/10 torX)r5=VectorX() [, (VectorX)r6=VectorX() [, (VectorX)r7=Vector X() [, (Vec- [936] -Underfull \hbox (badness 10000) in paragraph at lines 189828--189831 +Underfull \hbox (badness 10000) in paragraph at lines 189827--189830 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [937] [938] [939] -Underfull \hbox (badness 10000) in paragraph at lines 190620--190623 +Underfull \hbox (badness 10000) in paragraph at lines 190619--190622 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72781,26 +72701,26 @@ [941] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MindlinPhys.vMeniscus -' on page 942 undefined on input line 191241. +' on page 942 undefined on input line 191240. [942] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_L3Geom_FrictPhys -_HertzMindlin' on page 943 undefined on input line 191306. +_HertzMindlin' on page 943 undefined on input line 191305. [943] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_L3Geom_FrictPhys -_HertzMindlin' on page 944 undefined on input line 191730. +_HertzMindlin' on page 944 undefined on input line 191729. [944] [945] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_L3Geom_FrictPhys -_HertzMindlin' on page 946 undefined on input line 192245. +_HertzMindlin' on page 946 undefined on input line 192244. [946] @@ -72809,10 +72729,10 @@ [949] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet.surfaceNodes -' on page 950 undefined on input line 193074. +' on page 950 undefined on input line 193073. -Underfull \hbox (badness 10000) in paragraph at lines 193208--193211 +Underfull \hbox (badness 10000) in paragraph at lines 193207--193210 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72824,59 +72744,59 @@ [955] LaTeX Warning: Hyper reference `yade.timing:' on page 956 undefined on input li -ne 194546. +ne 194545. [956] [957] -Underfull \hbox (badness 10000) in paragraph at lines 195129--195132 +Underfull \hbox (badness 10000) in paragraph at lines 195128--195131 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [958] LaTeX Warning: Hyper reference `yade.gridpfacet:' on page 959 undefined on inpu -t line 195385. +t line 195384. [959] -Underfull \hbox (badness 10000) in paragraph at lines 195697--195700 +Underfull \hbox (badness 10000) in paragraph at lines 195696--195699 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [960] -Underfull \hbox (badness 10000) in paragraph at lines 195833--195836 +Underfull \hbox (badness 10000) in paragraph at lines 195832--195835 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [961] -Underfull \hbox (badness 10000) in paragraph at lines 195951--195954 +Underfull \hbox (badness 10000) in paragraph at lines 195950--195953 \TU/lmr/m/n/10 triaxialCompression.py[][] explain usage and inputs of Peri3dCon troller, [][]exam- [962] -Underfull \hbox (badness 10000) in paragraph at lines 196014--196017 +Underfull \hbox (badness 10000) in paragraph at lines 196013--196016 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [963] [964] -Underfull \hbox (badness 10000) in paragraph at lines 196555--196558 +Underfull \hbox (badness 10000) in paragraph at lines 196554--196557 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [965] -Underfull \hbox (badness 10000) in paragraph at lines 196829--196832 +Underfull \hbox (badness 10000) in paragraph at lines 196828--196831 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 7814) in paragraph at lines 196868--196871 +Underfull \hbox (badness 7814) in paragraph at lines 196867--196870 \TU/lmr/m/n/10 Desired stress or strain values (depending on stressMask), strai ns defined as [966] [967] -Underfull \hbox (badness 10000) in paragraph at lines 197187--197190 +Underfull \hbox (badness 10000) in paragraph at lines 197186--197189 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -72884,102 +72804,102 @@ [969] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Sphere2AABB' on page -970 undefined on input line 197734. +970 undefined on input line 197733. [970] -Underfull \hbox (badness 10000) in paragraph at lines 197922--197925 +Underfull \hbox (badness 10000) in paragraph at lines 197921--197924 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [971] [972] -Underfull \hbox (badness 10000) in paragraph at lines 198266--198269 +Underfull \hbox (badness 10000) in paragraph at lines 198265--198268 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [973] [974] -Underfull \hbox (badness 10000) in paragraph at lines 198831--198834 +Underfull \hbox (badness 10000) in paragraph at lines 198830--198833 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [975] -Underfull \hbox (badness 10000) in paragraph at lines 199006--199009 +Underfull \hbox (badness 10000) in paragraph at lines 199005--199008 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [976] [977] -Underfull \hbox (badness 10000) in paragraph at lines 199455--199458 +Underfull \hbox (badness 10000) in paragraph at lines 199454--199457 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [978] [979] -Underfull \hbox (badness 10000) in paragraph at lines 199989--199992 +Underfull \hbox (badness 10000) in paragraph at lines 199988--199991 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [980] -Underfull \hbox (badness 10000) in paragraph at lines 200237--200240 +Underfull \hbox (badness 10000) in paragraph at lines 200236--200239 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [981] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Plane' on page 982 un -defined on input line 200411. +defined on input line 200410. [982] -Underfull \hbox (badness 10000) in paragraph at lines 200497--200500 +Underfull \hbox (badness 10000) in paragraph at lines 200496--200499 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [983] -Underfull \hbox (badness 10000) in paragraph at lines 200691--200694 +Underfull \hbox (badness 10000) in paragraph at lines 200690--200693 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [984] -Underfull \hbox (badness 10000) in paragraph at lines 200976--200979 +Underfull \hbox (badness 10000) in paragraph at lines 200975--200978 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [985] [986] -Underfull \hbox (badness 10000) in paragraph at lines 201589--201592 +Underfull \hbox (badness 10000) in paragraph at lines 201588--201591 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [987] [988] [989] -Underfull \hbox (badness 10000) in paragraph at lines 202211--202214 +Underfull \hbox (badness 10000) in paragraph at lines 202210--202213 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [990] -Underfull \hbox (badness 10000) in paragraph at lines 202571--202574 +Underfull \hbox (badness 10000) in paragraph at lines 202570--202573 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [991] [992] -Underfull \hbox (badness 10000) in paragraph at lines 202900--202903 +Underfull \hbox (badness 10000) in paragraph at lines 202899--202902 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [993] [994] [995] -Underfull \hbox (badness 10000) in paragraph at lines 203555--203558 +Underfull \hbox (badness 10000) in paragraph at lines 203554--203557 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.mpy.mpirun' on page 9 -96 undefined on input line 203681. +96 undefined on input line 203680. [996] @@ -72987,52 +72907,52 @@ [998] [999] [1000] -Underfull \hbox (badness 10000) in paragraph at lines 204916--204919 +Underfull \hbox (badness 10000) in paragraph at lines 204915--204918 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1001] [1002] [1003] -Underfull \hbox (badness 10000) in paragraph at lines 205581--205584 +Underfull \hbox (badness 10000) in paragraph at lines 205580--205583 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1004] [1005] [1006] -Underfull \hbox (badness 10000) in paragraph at lines 206412--206415 +Underfull \hbox (badness 10000) in paragraph at lines 206411--206414 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1007] [1008] -Underfull \hbox (badness 10000) in paragraph at lines 206737--206740 +Underfull \hbox (badness 10000) in paragraph at lines 206736--206739 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1009] -Underfull \hbox (badness 10000) in paragraph at lines 206911--206914 +Underfull \hbox (badness 10000) in paragraph at lines 206910--206913 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 207073--207076 +Underfull \hbox (badness 10000) in paragraph at lines 207072--207075 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1010] [1011] -Underfull \hbox (badness 10000) in paragraph at lines 207404--207407 +Underfull \hbox (badness 10000) in paragraph at lines 207403--207406 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1012] [1013] -Underfull \hbox (badness 10000) in paragraph at lines 207783--207786 +Underfull \hbox (badness 10000) in paragraph at lines 207782--207785 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 7944) in paragraph at lines 207822--207825 +Underfull \hbox (badness 7944) in paragraph at lines 207821--207824 \TU/lmr/m/n/10 A special type of compaction with imposed final porosity [][]\TU /lmr/m/it/10 TriaxialCompressio- @@ -73040,12 +72960,12 @@ [1015] [1016] [1017] -Underfull \hbox (badness 10000) in paragraph at lines 208703--208706 +Underfull \hbox (badness 10000) in paragraph at lines 208702--208705 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1018] -Underfull \hbox (badness 10000) in paragraph at lines 209052--209055 +Underfull \hbox (badness 10000) in paragraph at lines 209051--209054 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -73054,7 +72974,7 @@ [1021] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CapillaryTriaxialTest -' on page 1022 undefined on input line 209706. +' on page 1022 undefined on input line 209705. [1022] @@ -73062,33 +72982,33 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 1023 undefined on input line 209795. +ler.sigma_iso' on page 1023 undefined on input line 209794. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 1023 undefined on input line 209795. +ler.sigma_iso' on page 1023 undefined on input line 209794. Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 1023 undefined on input line 209796. +ler.sigma_iso' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.isAxisymetric' on page 1023 undefined on input line 209796. +ler.isAxisymetric' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma1' on page 1023 undefined on input line 209796. +ler.sigma1' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma2' on page 1023 undefined on input line 209796. +ler.sigma2' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma3' on page 1023 undefined on input line 209796. +ler.sigma3' on page 1023 undefined on input line 209795. [1023] @@ -73098,22 +73018,22 @@ Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 210596--210599 +Underfull \hbox (badness 10000) in paragraph at lines 210595--210598 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1027] [1028] -Underfull \hbox (badness 10000) in paragraph at lines 210840--210843 +Underfull \hbox (badness 10000) in paragraph at lines 210839--210842 []\TU/lmr/m/n/10 Potential applicatons are presented in [[]], and examples sect ion (see -Underfull \hbox (badness 10000) in paragraph at lines 210929--210932 +Underfull \hbox (badness 10000) in paragraph at lines 210928--210931 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1029] -Underfull \hbox (badness 10000) in paragraph at lines 211120--211123 +Underfull \hbox (badness 10000) in paragraph at lines 211119--211122 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -73121,25 +73041,25 @@ [1031] LaTeX Warning: Hyper reference `yade.utils:yade.utils.bodyStressTensors' on pag -e 1032 undefined on input line 211411. +e 1032 undefined on input line 211410. [1032] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.JCFpmState.tensBreak' - on page 1033 undefined on input line 211434. + on page 1033 undefined on input line 211433. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.JCFpmState.shearBreak -' on page 1033 undefined on input line 211434. +' on page 1033 undefined on input line 211433. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ThermalEngine' on pag -e 1033 undefined on input line 211446. +e 1033 undefined on input line 211445. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PartialSatClayEngine' - on page 1033 undefined on input line 211470. + on page 1033 undefined on input line 211469. [1033] @@ -73169,7 +73089,7 @@ [1057] [1058] [1059] -Underfull \hbox (badness 5091) in paragraph at lines 218634--218638 +Underfull \hbox (badness 5091) in paragraph at lines 218633--218637 \TU/lmr/m/n/10 Add data from arguments name1=value1,name2=value2 to yade.plot.d ata. (the old @@ -73187,36 +73107,36 @@ Missing character: There is no θ (U+03B8) in font [lmmono10-italic]:! [1067] -Underfull \hbox (badness 10000) in paragraph at lines 219739--219741 +Underfull \hbox (badness 10000) in paragraph at lines 219738--219740 []\TU/lmr/m/n/10 Returned dictionary always containing keys ‘type’ (one of [1068] -Underfull \hbox (badness 5064) in paragraph at lines 219848--219850 +Underfull \hbox (badness 5064) in paragraph at lines 219847--219849 \TU/lmr/m/n/10 a list of 6 PotentialBlock Bodies enclosing the packing, in the order [1069] [1070] -Underfull \vbox (badness 1442) detected at line 220160 +Underfull \vbox (badness 1442) detected at line 220159 [1071] LaTeX Warning: Hyper reference `yade.utils:yade.utils.PWaveTimeStep' on page 10 -72 undefined on input line 220204. +72 undefined on input line 220203. [1072] -Underfull \hbox (badness 10000) in paragraph at lines 220426--220428 +Underfull \hbox (badness 10000) in paragraph at lines 220425--220427 \TU/lmr/m/n/10 a list of 6 wall Bodies enclosing the packing, in the order [1073] [1074] [1075] [1076] -Underfull \hbox (badness 10000) in paragraph at lines 220949--220954 +Underfull \hbox (badness 10000) in paragraph at lines 220948--220953 \TU/lmr/m/n/10 Returns (uniformly distributed) random orientation. Taken from -Underfull \hbox (badness 5388) in paragraph at lines 221004--221010 +Underfull \hbox (badness 5388) in paragraph at lines 221003--221009 []\TU/lmr/m/n/10 O.tags[‘description’]=… # assigns the description column; migh t be synthe- @@ -73226,11 +73146,11 @@ Missing character: There is no ∈ (U+2208) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.utils:yade.utils.approxSectionArea' on pag -e 1080 undefined on input line 221382. +e 1080 undefined on input line 221381. LaTeX Warning: Hyper reference `yade.utils:yade.utils.voxelPorosity' on page 10 -80 undefined on input line 221416. +80 undefined on input line 221415. [1080] @@ -73241,19 +73161,19 @@ Missing character: There is no ∈ (U+2208) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TesselationWrapper' o -n page 1082 undefined on input line 221743. +n page 1082 undefined on input line 221742. [1082] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.cart2spher' on page 1 -083 undefined on input line 221841. +083 undefined on input line 221840. [1083] [1084] [1085] -Underfull \hbox (badness 10000) in paragraph at lines 222174--222187 +Underfull \hbox (badness 10000) in paragraph at lines 222173--222186 []\TU/lmr/m/n/10 Arguments are: vCell : volume of a cell, all slices combined. (e.g. @@ -73264,35 +73184,35 @@ [1090] [1091] [1092] -Underfull \hbox (badness 10000) in paragraph at lines 223380--223382 +Underfull \hbox (badness 10000) in paragraph at lines 223379--223381 []\TU/lmr/m/n/10 Example: [][]examples/packs/packs.py[][], usage of LSMGenGeo l ibrary in [][]exam- -Underfull \hbox (badness 10000) in paragraph at lines 223388--223390 +Underfull \hbox (badness 10000) in paragraph at lines 223387--223389 [][][]$[][][][] [] [] [] [][][] [] [][][][][][] [] [][][] [] [][] [] [][][][][] [][][][] [] [][][][][][] [] [][][] [] [][][][][][][] [] [][][][][][][][][] [] [ ][][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 223448--223450 +Underfull \hbox (badness 10000) in paragraph at lines 223447--223449 []\TU/lmr/m/n/10 Example: [][]examples/packs/packs.py[][], usage of LSMGenGeo l ibrary in [][]exam- [1093] -Underfull \hbox (badness 10000) in paragraph at lines 223456--223458 +Underfull \hbox (badness 10000) in paragraph at lines 223455--223457 [][][]$[][][][] [] [] [] [][][] [] [][][][][][] [] [][][] [] [][] [] [][][][][] [][][][] [] [][][][][][] [] [][][] [] [][][][][][][] [] [][][][][][][][][] [] [ ][][][] [] [1094] [1095] -Underfull \hbox (badness 10000) in paragraph at lines 223859--223861 +Underfull \hbox (badness 10000) in paragraph at lines 223858--223860 \TU/lmtt/m/n/10 z2_-x3_-y3_-z3'``(default), ``'x1_-y1_-z1_-x2_-y2_-z2_-x3_-y3_- z3_-matId'\TU/lmr/m/n/10 , [1096] LaTeX Warning: Hyper reference `yade.polyhedra_utils:yade.polyhedra_utils.polyh -edra' on page 1097 undefined on input line 223923. +edra' on page 1097 undefined on input line 223922. [1097] @@ -73303,31 +73223,31 @@ [1102] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FlowEngine' on page 1 -103 undefined on input line 224512. +103 undefined on input line 224511. -Underfull \hbox (badness 5475) in paragraph at lines 224523--224525 +Underfull \hbox (badness 5475) in paragraph at lines 224522--224524 []\TU/lmr/m/n/10 ENABLE_-MASK_-ARBITRARY: enable arbitrary precision of bitmask variables (only LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PartialSatClayEngine' - on page 1103 undefined on input line 224544. + on page 1103 undefined on input line 224543. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FlowEngine' on page 1 -103 undefined on input line 224548. +103 undefined on input line 224547. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PotentialBlock' on pa -ge 1103 undefined on input line 224552. +ge 1103 undefined on input line 224551. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ThermalEngine' on pag -e 1103 undefined on input line 224568. +e 1103 undefined on input line 224567. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TwoPhaseFlowEngine' o -n page 1103 undefined on input line 224572. +n page 1103 undefined on input line 224571. [1103] @@ -73337,7 +73257,7 @@ ex-text;! [1106] -Underfull \hbox (badness 6380) in paragraph at lines 224889--224891 +Underfull \hbox (badness 6380) in paragraph at lines 224888--224890 []\TU/lmr/m/n/10 V. Šmilauer et al. (2021), Yade Documentation 3rd ed. The Yade Project. @@ -73346,10 +73266,10 @@ Chapter 3. [1109] -Underfull \hbox (badness 10000) in paragraph at lines 225108--225108 +Underfull \hbox (badness 10000) in paragraph at lines 225107--225107 []\TU/lmss/m/n/10 mod- -Underfull \hbox (badness 10000) in paragraph at lines 225108--225108 +Underfull \hbox (badness 10000) in paragraph at lines 225107--225107 []\TU/lmtt/m/n/10 libQtGUI.so\TU/lmr/m/n/10 , [1110] @@ -73357,76 +73277,76 @@ [1112] LaTeX Warning: Hyper reference `yade.log:' on page 1113 undefined on input line - 225359. + 225358. -Underfull \hbox (badness 10000) in paragraph at lines 225410--225412 +Underfull \hbox (badness 10000) in paragraph at lines 225409--225411 []|\TU/lmss/m/n/10 op- [1113] [1114] [1115] -Underfull \hbox (badness 6825) in paragraph at lines 225686--225690 +Underfull \hbox (badness 6825) in paragraph at lines 225685--225689 []|\TU/lmr/m/n/10 Creates logger static variable (with name -Underfull \hbox (badness 10000) in paragraph at lines 225691--225693 +Underfull \hbox (badness 10000) in paragraph at lines 225690--225692 []|\TU/lmtt/m/n/10 TEMPLATE_-CREATE_- -Underfull \hbox (badness 6825) in paragraph at lines 225694--225698 +Underfull \hbox (badness 6825) in paragraph at lines 225693--225697 []|\TU/lmr/m/n/10 Creates logger static variable (with name [1116] Overfull \vbox (27.55235pt too high) has occurred while \output is active [1117] [1118] -Underfull \hbox (badness 10000) in paragraph at lines 225907--225909 +Underfull \hbox (badness 10000) in paragraph at lines 225906--225908 []\TU/lmr/m/n/10 Inside \TU/lmtt/m/n/10 O.engines \TU/lmr/m/n/10 there has to b e a call at the end of the loop to [1119] [1120] -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 []\TU/lmss/m/n/10 dispatch -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 []\TU/lmss/m/n/10 created -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 BoundDis- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 BoundFunc- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IGeomDis- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IGeomFunc- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IPhysDis- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IPhysFunc- -Underfull \hbox (badness 5578) in paragraph at lines 226186--226186 +Underfull \hbox (badness 5578) in paragraph at lines 226185--226185 []\TU/lmr/m/n/10 2 (asymet- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IGeom[][] [1121] [1122] LaTeX Warning: Hyper reference `yade.utils:' on page 1123 undefined on input li -ne 226298. +ne 226297. -Underfull \hbox (badness 6396) in paragraph at lines 226358--226360 +Underfull \hbox (badness 6396) in paragraph at lines 226357--226359 \TU/lmr/m/n/10 To link to an inheritance graph of some base class a [][]\TU/lmr /m/it/10 global anchor[][] \TU/lmr/m/n/10 is created -Underfull \hbox (badness 10000) in paragraph at lines 226358--226360 +Underfull \hbox (badness 10000) in paragraph at lines 226357--226359 \TU/lmr/m/n/10 with name \TU/lmtt/m/n/10 inheritanceGraph* \TU/lmr/m/n/10 added in front of the class name, for example @@ -73435,7 +73355,7 @@ [1125] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Se3r' on page 1126 un -defined on input line 226569. +defined on input line 226568. [1126] @@ -73443,18 +73363,18 @@ [1128] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.preProce -ssAttributes' on page 1129 undefined on input line 226756. +ssAttributes' on page 1129 undefined on input line 226755. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.postProc -essAttributes' on page 1129 undefined on input line 226756. +essAttributes' on page 1129 undefined on input line 226755. -Underfull \hbox (badness 10000) in paragraph at lines 226755--226757 +Underfull \hbox (badness 10000) in paragraph at lines 226754--226756 []\TU/lmr/m/n/10 Yade also provides callback for before/after (de) serializatio n, virtual functions \TU/lmr/m/it/10 Serial- -Underfull \hbox (badness 10000) in paragraph at lines 226755--226757 +Underfull \hbox (badness 10000) in paragraph at lines 226754--226756 \TU/lmr/m/it/10 izable::preProcessAttributes \TU/lmr/m/n/10 and \TU/lmr/m/it/10 Serializable::postProcessAttributes\TU/lmr/m/n/10 , which receive one \TU/lmtt /m/n/10 bool @@ -73464,22 +73384,22 @@ [1130] [1131] -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 [1132] -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 [1133] -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 [1134] -Overfull \vbox (0.971pt too high) detected at line 227123 +Overfull \vbox (0.971pt too high) detected at line 227122 [1135] [1136] @@ -73491,7 +73411,7 @@ [1142] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Indexable' on page 11 -43 undefined on input line 227645. +43 undefined on input line 227644. [1143] @@ -73499,8 +73419,6 @@ [1145] [1146] [1147] -Overfull \vbox (2.09308pt too high) detected at line 227994 - [1148] [1149] Missing character: There is no μ (U+03BC) in font [lmmono10-regular]:! @@ -73525,11 +73443,11 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.OpenGLRenderingEngine -' on page 1151 undefined on input line 228147. +' on page 1151 undefined on input line 228146. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.OpenGLRenderingEngine -' on page 1151 undefined on input line 228172. +' on page 1151 undefined on input line 228171. [1151] @@ -73543,49 +73461,49 @@ [1156] LaTeX Warning: Hyper reference `yade.utils:yade.utils.createInteraction' on pag -e 1157 undefined on input line 228593. +e 1157 undefined on input line 228592. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Material.stateTypeOk' - on page 1157 undefined on input line 228611. + on page 1157 undefined on input line 228610. [1157] LaTeX Warning: Hyper reference `yade.qt:yade.qt.Controller' on page 1158 undefi -ned on input line 228650. +ned on input line 228649. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.initializers' o -n page 1158 undefined on input line 228691. +n page 1158 undefined on input line 228690. [1158] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.initializers' o -n page 1159 undefined on input line 228757. +n page 1159 undefined on input line 228756. + +[1159] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.clone' o -n page 1159 undefined on input line 228824. +n page 1160 undefined on input line 228823. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.updateEx -istingAttrs' on page 1159 undefined on input line 228824. +istingAttrs' on page 1160 undefined on input line 228823. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.pyDictCu -stom' on page 1159 undefined on input line 228824. +stom' on page 1160 undefined on input line 228823. -[1159] - LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.pyGenericPotential' o -n page 1160 undefined on input line 228846. +n page 1160 undefined on input line 228845. LaTeX Warning: Hyper reference `yade.minieigenHP:' on page 1160 undefined on in -put line 228876. +put line 228875. [1160] @@ -73599,35 +73517,35 @@ [1168] Chapter 4. -Underfull \hbox (badness 7907) in paragraph at lines 229534--229537 +Underfull \hbox (badness 7907) in paragraph at lines 229533--229536 \TU/lmr/m/n/10 A number of example scripts can be found in Yade sources, see [] \TU/lmr/bx/n/10 ‘the OpenFoam -Underfull \hbox (badness 10000) in paragraph at lines 229542--229544 +Underfull \hbox (badness 10000) in paragraph at lines 229541--229543 []\TU/lmr/m/n/10 An older version of the coupling, which was using OpenFoam6, i s archived -Underfull \hbox (badness 10000) in paragraph at lines 229542--229544 +Underfull \hbox (badness 10000) in paragraph at lines 229541--229543 \TU/lmr/m/n/10 in branch []\TU/lmr/bx/n/10 ‘FOAM6couplingArchive\TU/lmr/m/n/10 ,:yref:\TU/lmr/m/it/10 aver ageDrag\TU/lmr/m/n/10 ), @@ -75929,114 +75847,114 @@ [334] [335] [336] -Underfull \hbox (badness 10000) in paragraph at lines 54392--54395 +Underfull \hbox (badness 10000) in paragraph at lines 54391--54394 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [337] -Underfull \hbox (badness 10000) in paragraph at lines 54622--54625 +Underfull \hbox (badness 10000) in paragraph at lines 54621--54624 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [338] -Underfull \hbox (badness 10000) in paragraph at lines 54854--54857 +Underfull \hbox (badness 10000) in paragraph at lines 54853--54856 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [339] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 340 undefined on input line 54941. +ge 340 undefined on input line 54940. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 340 undefined on input line 54941. +ge 340 undefined on input line 54940. [340] -Underfull \hbox (badness 10000) in paragraph at lines 55115--55118 +Underfull \hbox (badness 10000) in paragraph at lines 55114--55117 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 341 undefined on input line 55195. +ge 341 undefined on input line 55194. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 341 undefined on input line 55234. +ge 341 undefined on input line 55233. [341] Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 55422--55425 +Underfull \hbox (badness 10000) in paragraph at lines 55421--55424 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [342] -Underfull \hbox (badness 10000) in paragraph at lines 55597--55600 +Underfull \hbox (badness 10000) in paragraph at lines 55596--55599 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [343] -Underfull \hbox (badness 10000) in paragraph at lines 55759--55762 +Underfull \hbox (badness 10000) in paragraph at lines 55758--55761 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [344] -Underfull \hbox (badness 10000) in paragraph at lines 55999--56002 +Underfull \hbox (badness 10000) in paragraph at lines 55998--56001 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [345] -Underfull \hbox (badness 10000) in paragraph at lines 56265--56268 +Underfull \hbox (badness 10000) in paragraph at lines 56264--56267 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [346] -Underfull \hbox (badness 10000) in paragraph at lines 56453--56456 +Underfull \hbox (badness 10000) in paragraph at lines 56452--56455 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [347] [348] -Underfull \hbox (badness 10000) in paragraph at lines 56765--56768 +Underfull \hbox (badness 10000) in paragraph at lines 56764--56767 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 56914--56917 +Underfull \hbox (badness 10000) in paragraph at lines 56913--56916 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [349] -Underfull \hbox (badness 10000) in paragraph at lines 57086--57089 +Underfull \hbox (badness 10000) in paragraph at lines 57085--57088 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [350] -Underfull \hbox (badness 10000) in paragraph at lines 57239--57242 +Underfull \hbox (badness 10000) in paragraph at lines 57238--57241 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [351] -Underfull \hbox (badness 10000) in paragraph at lines 57405--57408 +Underfull \hbox (badness 10000) in paragraph at lines 57404--57407 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [352] -Underfull \hbox (badness 10000) in paragraph at lines 57571--57574 +Underfull \hbox (badness 10000) in paragraph at lines 57570--57573 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 57737--57740 +Underfull \hbox (badness 10000) in paragraph at lines 57736--57739 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [353] -Underfull \hbox (badness 10000) in paragraph at lines 57903--57906 +Underfull \hbox (badness 10000) in paragraph at lines 57902--57905 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -76045,11 +75963,11 @@ [356] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58279. +_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58278. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58381. +_ScGeom.interactionDetectionFactor' on page 357 undefined on input line 58380. [357] @@ -76059,15 +75977,15 @@ [361] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Sphere2AABB' on page -362 undefined on input line 59483. +362 undefined on input line 59482. -Underfull \hbox (badness 10000) in paragraph at lines 59665--59668 +Underfull \hbox (badness 10000) in paragraph at lines 59664--59667 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [362] -Underfull \hbox (badness 10000) in paragraph at lines 59805--59805 +Underfull \hbox (badness 10000) in paragraph at lines 59804--59804 \TU/lmr/m/it/10 Connection_-GridConnection_-GridCoGridCoGeom[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Ig2_-GridConnection_-PFacet_-ScGeom[][]\TU/lmr/m/n/10 , [ ][]\TU/lmr/m/it/10 Ig2_- @@ -76086,11 +76004,11 @@ [374] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ScGridCoGeom6D' on pa -ge 375 undefined on input line 61942. +ge 375 undefined on input line 61941. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GricConnection' on pa -ge 375 undefined on input line 61942. +ge 375 undefined on input line 61941. [375] @@ -76103,7 +76021,7 @@ [382] [383] [384] -Underfull \hbox (badness 10000) in paragraph at lines 63869--63872 +Underfull \hbox (badness 10000) in paragraph at lines 63868--63871 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -76112,14 +76030,14 @@ [387] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CohFrictMat.isCohesiv -e`=``True`' on page 388 undefined on input line 64323. +e`=``True`' on page 388 undefined on input line 64322. [388] [389] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FrictMatCDMExt' on pa -ge 390 undefined on input line 64703. +ge 390 undefined on input line 64702. [390] @@ -76128,7 +76046,7 @@ [393] [394] -LaTeX Warning: Command \u invalid in math mode on input line 65802. +LaTeX Warning: Command \u invalid in math mode on input line 65801. Missing character: There is no ̆ ("306) in font eurm7! @@ -76138,37 +76056,37 @@ [398] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionShapeParameter' on page 399 undefined on input line 66642. +s.xSectionShapeParameter' on page 399 undefined on input line 66641. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionScaleParameter' on page 399 undefined on input line 66655. +s.xSectionScaleParameter' on page 399 undefined on input line 66654. [399] [400] [401] -Underfull \hbox (badness 10000) in paragraph at lines 67305--67308 +Underfull \hbox (badness 10000) in paragraph at lines 67304--67307 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [402] -Underfull \hbox (badness 7504) in paragraph at lines 67393--67393 +Underfull \hbox (badness 7504) in paragraph at lines 67392--67392 \TU/lmr/m/it/10 ElPerfPl[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-L6Geom_- FrictPhys_-Linear[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-MultiScGeom_-Mu ltiFrictPhys_-CundallStrack[][]\TU/lmr/m/n/10 , -Underfull \hbox (badness 6188) in paragraph at lines 67393--67393 +Underfull \hbox (badness 6188) in paragraph at lines 67392--67392 [][]\TU/lmr/m/it/10 Law2_-SCG_-KnKsPhys_-KnKsLaw[][]\TU/lmr/m/n/10 , [][]\TU/lm r/m/it/10 Law2_-ScGeom6D_-CohFrictPhys_-CohesionMoment[][]\TU/lmr/m/n/10 , [][] \TU/lmr/m/it/10 Law2_-Sc- -Underfull \hbox (badness 10000) in paragraph at lines 67393--67393 +Underfull \hbox (badness 10000) in paragraph at lines 67392--67392 \TU/lmr/m/it/10 Geom6D_-InelastCohFrictPhys_-CohesionMoment[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-ScGeom_-BubblePhys_-Bubble[][]\TU/lmr/m/n/10 , [][]\ TU/lmr/m/it/10 Law2_-Sc- -Underfull \hbox (badness 10000) in paragraph at lines 67393--67393 +Underfull \hbox (badness 10000) in paragraph at lines 67392--67392 \TU/lmr/m/it/10 Strack[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-ScGeom_-Wi rePhys_-WirePM[][]\TU/lmr/m/n/10 , [][]\TU/lmr/m/it/10 Law2_-ScGridCoGeom_-CohF rictPhys_-CundallStrack[][]\TU/lmr/m/n/10 , @@ -76178,21 +76096,21 @@ [405] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridConnection' on pa -ge 406 undefined on input line 67927. +ge 406 undefined on input line 67926. [406] [407] -Underfull \hbox (badness 10000) in paragraph at lines 68326--68330 +Underfull \hbox (badness 10000) in paragraph at lines 68325--68329 \TU/lmr/m/n/10 Applies [][]\TU/lmr/m/it/10 Law2_-ScGeom_-FrictPhys_-CundallStra ck[][] \TU/lmr/m/n/10 at each contact point of a LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_Dem3DofGeom_Fric -tPhys_Basic' on page 408 undefined on input line 68500. +tPhys_Basic' on page 408 undefined on input line 68499. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Dem3DofGeom' on page -408 undefined on input line 68500. +408 undefined on input line 68499. [408] @@ -76200,7 +76118,7 @@ LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom6D_CohFric tPhys_CohesionMoment.momentRotationLaw' on page 410 undefined on input line 687 -75. +74. [410] @@ -76211,7 +76129,7 @@ [415] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 416 und -efined on input line 69991. +efined on input line 69990. [416] @@ -76222,7 +76140,7 @@ [421] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 422 und -efined on input line 71305. +efined on input line 71304. [422] @@ -76231,13 +76149,13 @@ [425] [426] [427] -Underfull \hbox (badness 10000) in paragraph at lines 72697--72700 +Underfull \hbox (badness 10000) in paragraph at lines 72696--72699 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [428] [429] -Underfull \hbox (badness 10000) in paragraph at lines 73131--73134 +Underfull \hbox (badness 10000) in paragraph at lines 73130--73133 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -76246,7 +76164,7 @@ [432] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CapillaryTriaxialTest -' on page 433 undefined on input line 73633. +' on page 433 undefined on input line 73632. [433] @@ -76254,33 +76172,33 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 434 undefined on input line 73722. +ler.sigma_iso' on page 434 undefined on input line 73721. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 434 undefined on input line 73722. +ler.sigma_iso' on page 434 undefined on input line 73721. Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 434 undefined on input line 73723. +ler.sigma_iso' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.isAxisymetric' on page 434 undefined on input line 73723. +ler.isAxisymetric' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma1' on page 434 undefined on input line 73723. +ler.sigma1' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma2' on page 434 undefined on input line 73723. +ler.sigma2' on page 434 undefined on input line 73722. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma3' on page 434 undefined on input line 73723. +ler.sigma3' on page 434 undefined on input line 73722. [434] @@ -76302,13 +76220,13 @@ [450] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CpmPhys.colorStrainRa -tio' on page 451 undefined on input line 77855. +tio' on page 451 undefined on input line 77854. [451] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.utils.fabricTensor' o -n page 452 undefined on input line 78139. +n page 452 undefined on input line 78138. [452] @@ -76317,7 +76235,7 @@ [455] LaTeX Warning: Hyper reference `yade.timing:' on page 456 undefined on input li -ne 79150. +ne 79149. [456] @@ -76344,13 +76262,18 @@ [462] LaTeX Warning: Hyper reference `yade.utils:yade.utils.setRefSe3' on page 463 un -defined on input line 80577. +defined on input line 80576. [463] [464] [465] +Underfull \hbox (badness 10000) in paragraph at lines 81414--81417 +\TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use +d if + [466] +[467] Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∇ (U+2207) in font [lmroman10-regular]:mapping=t @@ -76366,32 +76289,26 @@ Missing character: There is no ∇ (U+2207) in font [lmroman10-regular]:mapping=t ex-text;! -[467] - LaTeX Warning: Hyper reference `yade.utils:yade.utils.setRefSe3' on page 468 un -defined on input line 81667. +defined on input line 81911. [468] [469] -Underfull \hbox (badness 10000) in paragraph at lines 82158--82161 +[470] +Underfull \hbox (badness 10000) in paragraph at lines 82521--82524 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -[470] [471] [472] [473] -Underfull \hbox (badness 10000) in paragraph at lines 83326--83329 -\TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use -d if - [474] [475] [476] [477] [478] -Underfull \hbox (badness 10000) in paragraph at lines 83804--83806 +Underfull \hbox (badness 10000) in paragraph at lines 83803--83805 []\TU/lmr/m/n/10 Example: [][]examples/test/vtk-exporter/vtkExporter.py[][], [] []examples/test/unv- @@ -76417,28 +76334,29 @@ [489] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridNode' on page 490 - undefined on input line 85245. + undefined on input line 85244. [490] [491] [492] [493] +Overfull \vbox (3.483pt too high) detected at line 85792 + [494] -Underfull \hbox (badness 10000) in paragraph at lines 85824--85828 +Underfull \hbox (badness 10000) in paragraph at lines 85823--85827 []\TU/lmr/m/n/10 There is a c++ template function for interpolating on such seq uences in Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! - -[495] Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! Missing character: There is no ∫ (U+222B) in font [lmroman10-regular]:mapping=t ex-text;! +[495] [496] Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! @@ -76460,43 +76378,43 @@ ex-text;! [500] -Underfull \hbox (badness 10000) in paragraph at lines 86920--86922 +Underfull \hbox (badness 10000) in paragraph at lines 86919--86921 \TU/lmr/m/n/10 argument in radians. Depending on compilation options wraps [501] [502] [503] -Underfull \hbox (badness 10000) in paragraph at lines 87263--87265 +Underfull \hbox (badness 10000) in paragraph at lines 87262--87264 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 87263--87265 +Underfull \hbox (badness 10000) in paragraph at lines 87262--87264 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps -[504] -Underfull \hbox (badness 7415) in paragraph at lines 87416--87418 +Underfull \hbox (badness 7415) in paragraph at lines 87415--87417 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of +[504] [505] [506] -Underfull \hbox (badness 5374) in paragraph at lines 87824--87826 +Underfull \hbox (badness 5374) in paragraph at lines 87823--87825 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 6125) in paragraph at lines 87824--87826 +Underfull \hbox (badness 6125) in paragraph at lines 87823--87825 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps [507] [508] [509] -Underfull \hbox (badness 7451) in paragraph at lines 88338--88340 +Underfull \hbox (badness 7451) in paragraph at lines 88337--88339 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the spherical harmonic polynomial of the or ders \TU/lmtt/m/n/10 l \TU/lmr/m/n/10 (unsigned -Underfull \hbox (badness 10000) in paragraph at lines 88338--88340 +Underfull \hbox (badness 10000) in paragraph at lines 88337--88339 \TU/lmr/m/n/10 <[][]$[][][][][] [] [] [] [][][] [] [][][][][] [] [][][] [] [][] [] [] [][][][] [] [] [] [][] [] [] [] [][][][] [] [][][][] [] [][][] [] [][][][ ] [] [][][][] [] [][][][][][][] [] @@ -76508,104 +76426,105 @@ ex-text;! [513] -Underfull \hbox (badness 10000) in paragraph at lines 89126--89128 +Underfull \hbox (badness 10000) in paragraph at lines 89125--89127 \TU/lmr/m/n/10 argument in radians. Depending on compilation options wraps [514] [515] -[516] -Underfull \hbox (badness 10000) in paragraph at lines 89469--89471 +Underfull \hbox (badness 10000) in paragraph at lines 89468--89470 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 89469--89471 +Underfull \hbox (badness 10000) in paragraph at lines 89468--89470 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps -Underfull \hbox (badness 7415) in paragraph at lines 89622--89624 +[516] +Underfull \hbox (badness 7415) in paragraph at lines 89621--89623 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of [517] [518] [519] -Underfull \hbox (badness 5374) in paragraph at lines 90030--90032 +Underfull \hbox (badness 5374) in paragraph at lines 90029--90031 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 6125) in paragraph at lines 90030--90032 +Underfull \hbox (badness 6125) in paragraph at lines 90029--90031 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps [520] [521] [522] -Underfull \hbox (badness 7451) in paragraph at lines 90544--90546 +Underfull \hbox (badness 7451) in paragraph at lines 90543--90545 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the spherical harmonic polynomial of the or ders \TU/lmtt/m/n/10 l \TU/lmr/m/n/10 (unsigned -Underfull \hbox (badness 10000) in paragraph at lines 90544--90546 +Underfull \hbox (badness 10000) in paragraph at lines 90543--90545 \TU/lmr/m/n/10 <[][]$[][][][][] [] [] [] [][][] [] [][][][][] [] [][][] [] [][] [] [] [][][][] [] [] [] [][] [] [] [] [][][][] [] [][][][] [] [][][] [] [][][][ ] [] [][][][] [] [][][][][][][] [] [523] -[524] Missing character: There is no π (U+03C0) in font [lmroman10-regular]:mapping=t ex-text;! + +[524] Missing character: There is no ↔ (U+2194) in font [lmroman10-regular]:mapping=t ex-text;! [525] -Underfull \hbox (badness 10000) in paragraph at lines 91152--91154 +Underfull \hbox (badness 10000) in paragraph at lines 91151--91153 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic cosine of the \TU/lmt t/m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91152--91154 +Underfull \hbox (badness 10000) in paragraph at lines 91151--91153 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps [526] -Underfull \hbox (badness 10000) in paragraph at lines 91228--91230 +Underfull \hbox (badness 10000) in paragraph at lines 91227--91229 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic sine of the \TU/lmtt/ m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91228--91230 +Underfull \hbox (badness 10000) in paragraph at lines 91227--91229 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps -[527] -Underfull \hbox (badness 10000) in paragraph at lines 91304--91306 +Underfull \hbox (badness 10000) in paragraph at lines 91303--91305 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the arc-hyperbolic tangent of the \TU/lm tt/m/n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 91304--91306 +Underfull \hbox (badness 10000) in paragraph at lines 91303--91305 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps +[527] [528] -Underfull \hbox (badness 10000) in paragraph at lines 91527--91529 +Underfull \hbox (badness 10000) in paragraph at lines 91526--91528 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the [][]complementary error functi on[][] of argument, -Underfull \hbox (badness 10000) in paragraph at lines 91527--91529 +Underfull \hbox (badness 10000) in paragraph at lines 91526--91528 \TU/lmr/m/n/10 that is \TU/lmtt/m/n/10 1.0[]erf(arg)\TU/lmr/m/n/10 . Depending on compilation options wraps [529] -Underfull \hbox (badness 10000) in paragraph at lines 91682--91684 +Underfull \hbox (badness 10000) in paragraph at lines 91681--91683 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 the floating-point remainder of the divisio n operation \TU/lmtt/m/n/10 x/y \TU/lmr/m/n/10 of -Underfull \hbox (badness 10000) in paragraph at lines 91682--91684 +Underfull \hbox (badness 10000) in paragraph at lines 91681--91683 \TU/lmr/m/n/10 the arguments \TU/lmtt/m/n/10 x \TU/lmr/m/n/10 and \TU/lmtt/m/n/ 10 y\TU/lmr/m/n/10 . Depending on compilation options wraps [530] [531] [532] -Underfull \hbox (badness 10000) in paragraph at lines 92191--92193 +Underfull \hbox (badness 10000) in paragraph at lines 92190--92192 \TU/lmtt/m/n/10 Real \TU/lmr/m/n/10 Computes the natural logarithm of the absol ute value of the -Underfull \hbox (badness 10000) in paragraph at lines 92191--92193 +Underfull \hbox (badness 10000) in paragraph at lines 92190--92192 [][]\TU/lmr/m/n/10 gamma function[][] of arg. Depending on compilation options wraps @@ -76613,25 +76532,25 @@ [534] [535] [536] -Underfull \hbox (badness 10000) in paragraph at lines 92802--92804 +Underfull \hbox (badness 10000) in paragraph at lines 92801--92803 \TU/lmtt/m/n/10 Complex \TU/lmr/m/n/10 the hyperbolic tangent of the \TU/lmtt/m /n/10 Complex \TU/lmr/m/n/10 argu- -Underfull \hbox (badness 10000) in paragraph at lines 92802--92804 +Underfull \hbox (badness 10000) in paragraph at lines 92801--92803 \TU/lmr/m/n/10 ment in radians. Depending on compilation options wraps [537] [538] [539] [540] -Underfull \hbox (badness 10000) in paragraph at lines 93932--93935 +Underfull \hbox (badness 10000) in paragraph at lines 93931--93934 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [541] [542] [543] -Underfull \hbox (badness 10000) in paragraph at lines 94795--94798 +Underfull \hbox (badness 10000) in paragraph at lines 94794--94797 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76639,7 +76558,7 @@ [545] [546] [547] -Underfull \hbox (badness 10000) in paragraph at lines 95787--95790 +Underfull \hbox (badness 10000) in paragraph at lines 95786--95789 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76663,7 +76582,7 @@ [565] [566] [567] -Underfull \hbox (badness 10000) in paragraph at lines 101754--101757 +Underfull \hbox (badness 10000) in paragraph at lines 101753--101756 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76671,7 +76590,7 @@ [569] [570] [571] -Underfull \hbox (badness 10000) in paragraph at lines 102617--102620 +Underfull \hbox (badness 10000) in paragraph at lines 102616--102619 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76679,7 +76598,7 @@ [573] [574] [575] -Underfull \hbox (badness 10000) in paragraph at lines 103609--103612 +Underfull \hbox (badness 10000) in paragraph at lines 103608--103611 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76691,12 +76610,12 @@ [581] [582] [583] -Underfull \hbox (badness 10000) in paragraph at lines 105793--105795 +Underfull \hbox (badness 10000) in paragraph at lines 105792--105794 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Real)x=Real(“0”) [, (Real)y=Rea l(“0”) [, [584] -Underfull \hbox (badness 10000) in paragraph at lines 106253--106255 +Underfull \hbox (badness 10000) in paragraph at lines 106252--106254 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Complex)x=Complex(“0”,”0”) [, ( Com- @@ -76710,7 +76629,7 @@ [592] [593] [594] -Underfull \hbox (badness 10000) in paragraph at lines 109234--109237 +Underfull \hbox (badness 10000) in paragraph at lines 109233--109236 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76718,22 +76637,22 @@ [596] [597] [598] -Underfull \hbox (badness 10000) in paragraph at lines 110097--110100 +Underfull \hbox (badness 10000) in paragraph at lines 110096--110099 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [599] [600] [601] -Underfull \hbox (badness 10000) in paragraph at lines 110967--110969 +Underfull \hbox (badness 10000) in paragraph at lines 110966--110968 \TU/lmr/m/n/10 torX)r2=VectorX() [, (VectorX)r3=VectorX() [, (VectorX)r4=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 110967--110969 +Underfull \hbox (badness 10000) in paragraph at lines 110966--110968 \TU/lmr/m/n/10 torX)r5=VectorX() [, (VectorX)r6=VectorX() [, (VectorX)r7=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 111089--111092 +Underfull \hbox (badness 10000) in paragraph at lines 111088--111091 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -76769,7 +76688,7 @@ [631] LaTeX Warning: Hyper reference `yade.pack:yade.pack.SpherePack.makeCloud' on pa -ge 632 undefined on input line 118558. +ge 632 undefined on input line 118557. [632] @@ -76784,35 +76703,35 @@ [641] LaTeX Font Warning: Font shape `TU/lmr/m/scit' undefined -(Font) using `TU/lmr/m/scsl' instead on input line 120860. +(Font) using `TU/lmr/m/scsl' instead on input line 120859. LaTeX Font Warning: Font shape `TU/lmr/m/scit' undefined -(Font) using `TU/lmr/m/scsl' instead on input line 121000. +(Font) using `TU/lmr/m/scsl' instead on input line 120999. [642] Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 121151--121154 +Underfull \hbox (badness 10000) in paragraph at lines 121150--121153 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [643] -Underfull \hbox (badness 10000) in paragraph at lines 121300--121303 +Underfull \hbox (badness 10000) in paragraph at lines 121299--121302 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [644] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121524. +_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121523. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ig2_Cylinder_Cylinder -_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121626. +_ScGeom.interactionDetectionFactor' on page 645 undefined on input line 121625. @@ -76821,25 +76740,25 @@ [647] [648] [649] -Underfull \hbox (badness 10000) in paragraph at lines 122796--122799 +Underfull \hbox (badness 10000) in paragraph at lines 122795--122798 \TU/lmr/m/n/10 Whether this body will be moved by forces. (In c++, use [650] [651] [652] [653] -Underfull \hbox (badness 10000) in paragraph at lines 123637--123640 +Underfull \hbox (badness 10000) in paragraph at lines 123636--123639 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [654] -Underfull \hbox (badness 10000) in paragraph at lines 123909--123912 +Underfull \hbox (badness 10000) in paragraph at lines 123908--123911 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [655] [656] -Underfull \hbox (badness 10000) in paragraph at lines 124245--124248 +Underfull \hbox (badness 10000) in paragraph at lines 124244--124247 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -76847,7 +76766,7 @@ [658] [659] [660] -Underfull \hbox (badness 10000) in paragraph at lines 125241--125244 +Underfull \hbox (badness 10000) in paragraph at lines 125240--125243 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -76871,26 +76790,26 @@ [663] LaTeX Warning: Hyper reference `yade.utils:yade.utils.setRefSe3' on page 664 un -defined on input line 125782. +defined on input line 125781. [664] Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 126090--126093 +Underfull \hbox (badness 10000) in paragraph at lines 126089--126092 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [665] -Underfull \hbox (badness 10000) in paragraph at lines 126269--126272 +Underfull \hbox (badness 10000) in paragraph at lines 126268--126271 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [666] [667] [668] -Underfull \hbox (badness 10000) in paragraph at lines 127089--127092 +Underfull \hbox (badness 10000) in paragraph at lines 127088--127091 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -76900,17 +76819,17 @@ [672] [673] [674] -Underfull \hbox (badness 10000) in paragraph at lines 128449--128452 +Underfull \hbox (badness 10000) in paragraph at lines 128448--128451 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [675] -Underfull \hbox (badness 10000) in paragraph at lines 128643--128646 +Underfull \hbox (badness 10000) in paragraph at lines 128642--128645 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [676] -Underfull \hbox (badness 10000) in paragraph at lines 128779--128782 +Underfull \hbox (badness 10000) in paragraph at lines 128778--128781 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t @@ -76924,18 +76843,18 @@ [680] [681] [682] -Underfull \hbox (badness 10000) in paragraph at lines 130244--130247 +Underfull \hbox (badness 10000) in paragraph at lines 130243--130246 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [683] [684] -Underfull \hbox (badness 10000) in paragraph at lines 130682--130685 +Underfull \hbox (badness 10000) in paragraph at lines 130681--130684 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [685] -Underfull \hbox (badness 10000) in paragraph at lines 130967--130970 +Underfull \hbox (badness 10000) in paragraph at lines 130966--130969 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- @@ -76944,118 +76863,118 @@ [688] [689] [690] -Underfull \hbox (badness 10000) in paragraph at lines 132076--132079 +Underfull \hbox (badness 10000) in paragraph at lines 132075--132078 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [691] -Underfull \hbox (badness 10000) in paragraph at lines 132316--132319 +Underfull \hbox (badness 10000) in paragraph at lines 132315--132318 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 132439--132442 +Underfull \hbox (badness 10000) in paragraph at lines 132438--132441 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [692] [693] -Underfull \hbox (badness 10000) in paragraph at lines 132806--132809 +Underfull \hbox (badness 10000) in paragraph at lines 132805--132808 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [694] -Underfull \hbox (badness 10000) in paragraph at lines 133100--133103 +Underfull \hbox (badness 10000) in paragraph at lines 133099--133102 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [695] -Underfull \hbox (badness 10000) in paragraph at lines 133354--133357 +Underfull \hbox (badness 10000) in paragraph at lines 133353--133356 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [696] -Underfull \hbox (badness 10000) in paragraph at lines 133483--133486 +Underfull \hbox (badness 10000) in paragraph at lines 133482--133485 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [697] [698] -Underfull \hbox (badness 10000) in paragraph at lines 133835--133838 +Underfull \hbox (badness 10000) in paragraph at lines 133834--133837 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [699] -Underfull \hbox (badness 10000) in paragraph at lines 134096--134099 +Underfull \hbox (badness 10000) in paragraph at lines 134095--134098 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [700] [701] -Underfull \hbox (badness 10000) in paragraph at lines 134361--134364 +Underfull \hbox (badness 10000) in paragraph at lines 134360--134363 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [702] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.castPart -icle' on page 703 undefined on input line 134644. +icle' on page 703 undefined on input line 134643. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.updatePr -ocList' on page 703 undefined on input line 134654. +ocList' on page 703 undefined on input line 134653. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.procList -' on page 703 undefined on input line 134659. +' on page 703 undefined on input line 134658. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.sumHydro -Force' on page 703 undefined on input line 134660. +Force' on page 703 undefined on input line 134659. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.exchange -DeltaT' on page 703 undefined on input line 134661. +DeltaT' on page 703 undefined on input line 134660. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.exchange -DeltaT' on page 703 undefined on input line 134714. +DeltaT' on page 703 undefined on input line 134713. -Underfull \hbox (badness 10000) in paragraph at lines 134781--134784 +Underfull \hbox (badness 10000) in paragraph at lines 134780--134783 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [703] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.exchange -DeltaT' on page 704 undefined on input line 134822. +DeltaT' on page 704 undefined on input line 134821. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.sumHydro -Force' on page 704 undefined on input line 134921. +Force' on page 704 undefined on input line 134920. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.particle -Data' on page 704 undefined on input line 135003. +Data' on page 704 undefined on input line 135002. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FoamCoupling.particle -Data' on page 704 undefined on input line 135003. +Data' on page 704 undefined on input line 135002. [704] [705] -Underfull \hbox (badness 10000) in paragraph at lines 135315--135318 +Underfull \hbox (badness 10000) in paragraph at lines 135314--135317 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 135477--135480 +Underfull \hbox (badness 10000) in paragraph at lines 135476--135479 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [706] [707] -Underfull \hbox (badness 10000) in paragraph at lines 135782--135785 +Underfull \hbox (badness 10000) in paragraph at lines 135781--135784 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77063,22 +76982,22 @@ [709] [710] -LaTeX Warning: Command \c invalid in math mode on input line 136567. +LaTeX Warning: Command \c invalid in math mode on input line 136566. Missing character: There is no ̧ ("327) in font eurm7! -LaTeX Warning: Command \c invalid in math mode on input line 136580. +LaTeX Warning: Command \c invalid in math mode on input line 136579. Missing character: There is no ̧ ("327) in font eurm7! [711] [712] -Underfull \hbox (badness 10000) in paragraph at lines 136949--136952 +Underfull \hbox (badness 10000) in paragraph at lines 136948--136951 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.enableR -edirection`=True. :ydefault:`false' on page 713 undefined on input line 136992. +edirection`=True. :ydefault:`false' on page 713 undefined on input line 136991. @@ -77087,7 +77006,7 @@ [715] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CpmPhys.colorStrainRa -tio' on page 716 undefined on input line 137797. +tio' on page 716 undefined on input line 137796. [716] @@ -77098,7 +77017,7 @@ [721] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.utils.fabricTensor' o -n page 722 undefined on input line 139378. +n page 722 undefined on input line 139377. [722] @@ -77106,78 +77025,78 @@ [724] [725] [726] -Underfull \hbox (badness 10000) in paragraph at lines 140559--140562 +Underfull \hbox (badness 10000) in paragraph at lines 140558--140561 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [727] [728] -Underfull \hbox (badness 10000) in paragraph at lines 141064--141067 +Underfull \hbox (badness 10000) in paragraph at lines 141063--141066 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [729] -Underfull \hbox (badness 10000) in paragraph at lines 141314--141317 +Underfull \hbox (badness 10000) in paragraph at lines 141313--141316 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [730] -Underfull \hbox (badness 10000) in paragraph at lines 141564--141567 +Underfull \hbox (badness 10000) in paragraph at lines 141563--141566 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [731] -Underfull \hbox (badness 10000) in paragraph at lines 141814--141817 +Underfull \hbox (badness 10000) in paragraph at lines 141813--141816 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [732] -Underfull \hbox (badness 10000) in paragraph at lines 142034--142037 +Underfull \hbox (badness 10000) in paragraph at lines 142033--142036 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GlobalStiffnessTimest -epper.viscEl' on page 733 undefined on input line 142108. +epper.viscEl' on page 733 undefined on input line 142107. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.utils.PWaveTimeStep' -on page 733 undefined on input line 142144. +on page 733 undefined on input line 142143. [733] -Underfull \hbox (badness 10000) in paragraph at lines 142196--142199 +Underfull \hbox (badness 10000) in paragraph at lines 142195--142198 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GlobalStiffnessTimest -epper.timestepSafetyCoefficient' on page 734 undefined on input line 142343. +epper.timestepSafetyCoefficient' on page 734 undefined on input line 142342. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Newton.gravity' on pa -ge 734 undefined on input line 142361. +ge 734 undefined on input line 142360. [734] -Underfull \hbox (badness 10000) in paragraph at lines 142410--142413 +Underfull \hbox (badness 10000) in paragraph at lines 142409--142412 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 142589--142592 +Underfull \hbox (badness 10000) in paragraph at lines 142588--142591 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [735] [736] [737] -Underfull \hbox (badness 10000) in paragraph at lines 143215--143218 +Underfull \hbox (badness 10000) in paragraph at lines 143214--143217 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [738] [739] -Underfull \hbox (badness 10000) in paragraph at lines 143926--143929 +Underfull \hbox (badness 10000) in paragraph at lines 143925--143928 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -77185,14 +77104,14 @@ [741] [742] [743] -Underfull \hbox (badness 10000) in paragraph at lines 144789--144792 +Underfull \hbox (badness 10000) in paragraph at lines 144788--144791 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [744] [745] [746] -Underfull \hbox (badness 10000) in paragraph at lines 145781--145784 +Underfull \hbox (badness 10000) in paragraph at lines 145780--145783 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -77216,7 +77135,7 @@ [764] [765] [766] -Underfull \hbox (badness 10000) in paragraph at lines 151748--151751 +Underfull \hbox (badness 10000) in paragraph at lines 151747--151750 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -77224,7 +77143,7 @@ [768] [769] [770] -Underfull \hbox (badness 10000) in paragraph at lines 152611--152614 +Underfull \hbox (badness 10000) in paragraph at lines 152610--152613 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -77232,7 +77151,7 @@ [772] [773] [774] -Underfull \hbox (badness 10000) in paragraph at lines 153603--153606 +Underfull \hbox (badness 10000) in paragraph at lines 153602--153605 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that @@ -77244,12 +77163,12 @@ [780] [781] [782] -Underfull \hbox (badness 10000) in paragraph at lines 155787--155789 +Underfull \hbox (badness 10000) in paragraph at lines 155786--155788 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Real)x=Real(“0”) [, (Real)y=Rea l(“0”) [, [783] -Underfull \hbox (badness 10000) in paragraph at lines 156247--156249 +Underfull \hbox (badness 10000) in paragraph at lines 156246--156248 []\TU/lmr/m/n/10 _-_-init_-_-( (object)arg1 [, (Complex)x=Complex(“0”,”0”) [, ( Com- @@ -77263,49 +77182,49 @@ [791] [792] [793] -Underfull \hbox (badness 10000) in paragraph at lines 159096--159099 +Underfull \hbox (badness 10000) in paragraph at lines 159095--159098 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [794] -Underfull \hbox (badness 10000) in paragraph at lines 159271--159274 +Underfull \hbox (badness 10000) in paragraph at lines 159270--159273 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [795] -Underfull \hbox (badness 10000) in paragraph at lines 159459--159462 +Underfull \hbox (badness 10000) in paragraph at lines 159458--159461 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [796] -Underfull \hbox (badness 10000) in paragraph at lines 159699--159702 +Underfull \hbox (badness 10000) in paragraph at lines 159698--159701 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! [797] -Underfull \hbox (badness 10000) in paragraph at lines 159939--159942 +Underfull \hbox (badness 10000) in paragraph at lines 159938--159941 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [798] [799] [800] -Underfull \hbox (badness 10000) in paragraph at lines 160421--160424 +Underfull \hbox (badness 10000) in paragraph at lines 160420--160423 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [801] -Underfull \hbox (badness 10000) in paragraph at lines 160475--160478 +Underfull \hbox (badness 10000) in paragraph at lines 160474--160477 \TU/lmr/m/n/10 Solve the 1D volume-averaged fluid momentum balance on the de- -Underfull \hbox (badness 10000) in paragraph at lines 160475--160478 +Underfull \hbox (badness 10000) in paragraph at lines 160474--160477 \TU/lmr/m/n/10 fined mesh ([][]\TU/lmr/m/it/10 nCell[][]\TU/lmr/m/n/10 , [][]\T U/lmr/m/it/10 deltaZ[][]\TU/lmr/m/n/10 ) from the volume-averaged solid profile s -Overfull \hbox (48.56209pt too wide) in paragraph at lines 160475--160478 +Overfull \hbox (48.56209pt too wide) in paragraph at lines 160474--160477 \TU/lmr/m/n/10 ([][]\TU/lmr/m/it/10 phiPart[][]\TU/lmr/m/n/10 ,:yref:\TU/lmr/m/ it/10 vxPart\TU/lmr/m/n/10 ,:yref:\TU/lmr/m/it/10 aver ageDrag\TU/lmr/m/n/10 ), @@ -77314,23 +77233,23 @@ [803] [804] [805] -Underfull \hbox (badness 10000) in paragraph at lines 161409--161412 +Underfull \hbox (badness 10000) in paragraph at lines 161408--161411 \TU/lmr/m/n/10 a list of data that will be saved. Can use veloc- [806] [807] [808] -Underfull \hbox (badness 10000) in paragraph at lines 162061--162064 +Underfull \hbox (badness 10000) in paragraph at lines 162060--162063 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [809] -Underfull \hbox (badness 10000) in paragraph at lines 162430--162433 +Underfull \hbox (badness 10000) in paragraph at lines 162429--162432 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [810] -Underfull \hbox (badness 10000) in paragraph at lines 162753--162756 +Underfull \hbox (badness 10000) in paragraph at lines 162752--162755 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77348,11 +77267,11 @@ [822] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ScGridCoGeom6D' on pa -ge 823 undefined on input line 165133. +ge 823 undefined on input line 165132. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.GricConnection' on pa -ge 823 undefined on input line 165133. +ge 823 undefined on input line 165132. [823] @@ -77371,40 +77290,40 @@ [836] [837] [838] -Underfull \hbox (badness 10000) in paragraph at lines 168154--168157 +Underfull \hbox (badness 10000) in paragraph at lines 168153--168156 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.BodyContainer.enableR -edirection`=True. :ydefault:`false' on page 839 undefined on input line 168197. +edirection`=True. :ydefault:`false' on page 839 undefined on input line 168196. [839] [840] -Underfull \hbox (badness 10000) in paragraph at lines 168500--168503 +Underfull \hbox (badness 10000) in paragraph at lines 168499--168502 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [841] [842] -Underfull \hbox (badness 10000) in paragraph at lines 169088--169091 +Underfull \hbox (badness 10000) in paragraph at lines 169087--169090 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [843] -Underfull \hbox (badness 10000) in paragraph at lines 169293--169296 +Underfull \hbox (badness 10000) in paragraph at lines 169292--169295 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [844] -Underfull \hbox (badness 10000) in paragraph at lines 169529--169532 +Underfull \hbox (badness 10000) in paragraph at lines 169528--169531 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [845] [846] -Underfull \hbox (badness 10000) in paragraph at lines 169759--169762 +Underfull \hbox (badness 10000) in paragraph at lines 169758--169761 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77412,14 +77331,14 @@ [848] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CohFrictMat.isCohesiv -e`=``True`' on page 849 undefined on input line 170260. +e`=``True`' on page 849 undefined on input line 170259. [849] [850] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FrictMatCDMExt' on pa -ge 851 undefined on input line 170640. +ge 851 undefined on input line 170639. [851] @@ -77428,7 +77347,7 @@ [854] [855] -LaTeX Warning: Command \u invalid in math mode on input line 171739. +LaTeX Warning: Command \u invalid in math mode on input line 171738. Missing character: There is no ̆ ("306) in font eurm7! @@ -77438,11 +77357,11 @@ [859] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionShapeParameter' on page 860 undefined on input line 172579. +s.xSectionShapeParameter' on page 860 undefined on input line 172578. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Ip2_JCFpmMat_JCFpmPhy -s.xSectionScaleParameter' on page 860 undefined on input line 172592. +s.xSectionScaleParameter' on page 860 undefined on input line 172591. [860] @@ -77454,36 +77373,36 @@ [866] [867] [868] -Underfull \hbox (badness 10000) in paragraph at lines 174672--174675 +Underfull \hbox (badness 10000) in paragraph at lines 174671--174674 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [869] [870] -Underfull \hbox (badness 10000) in paragraph at lines 175064--175067 +Underfull \hbox (badness 10000) in paragraph at lines 175063--175066 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [871] [872] -Underfull \hbox (badness 10000) in paragraph at lines 175463--175466 +Underfull \hbox (badness 10000) in paragraph at lines 175462--175465 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [873] [874] -Underfull \hbox (badness 10000) in paragraph at lines 175834--175837 +Underfull \hbox (badness 10000) in paragraph at lines 175833--175836 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [875] -Underfull \hbox (badness 10000) in paragraph at lines 176178--176181 +Underfull \hbox (badness 10000) in paragraph at lines 176177--176180 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [876] [877] -Underfull \hbox (badness 10000) in paragraph at lines 176462--176465 +Underfull \hbox (badness 10000) in paragraph at lines 176461--176464 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77498,22 +77417,22 @@ [886] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.gridConnection' on pa -ge 887 undefined on input line 178473. +ge 887 undefined on input line 178472. [887] -Underfull \hbox (badness 10000) in paragraph at lines 178872--178876 +Underfull \hbox (badness 10000) in paragraph at lines 178871--178875 \TU/lmr/m/n/10 Applies [][]\TU/lmr/m/it/10 Law2_-ScGeom_-FrictPhys_-CundallStra ck[][] \TU/lmr/m/n/10 at each contact point of a [888] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_Dem3DofGeom_Fric -tPhys_Basic' on page 889 undefined on input line 179046. +tPhys_Basic' on page 889 undefined on input line 179045. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Dem3DofGeom' on page -889 undefined on input line 179046. +889 undefined on input line 179045. [889] @@ -77521,13 +77440,13 @@ LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_ScGeom6D_CohFric tPhys_CohesionMoment.momentRotationLaw' on page 891 undefined on input line 179 -321. +320. [891] [892] [893] -Underfull \hbox (badness 10000) in paragraph at lines 179943--179946 +Underfull \hbox (badness 10000) in paragraph at lines 179942--179945 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77537,7 +77456,7 @@ [897] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 898 und -efined on input line 180747. +efined on input line 180746. [898] @@ -77548,7 +77467,7 @@ [903] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.O.dt' on page 904 und -efined on input line 182061. +efined on input line 182060. [904] @@ -77557,22 +77476,22 @@ [907] [908] [909] -Underfull \hbox (badness 10000) in paragraph at lines 183450--183453 +Underfull \hbox (badness 10000) in paragraph at lines 183449--183452 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [910] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 911 undefined on input line 183621. +ge 911 undefined on input line 183620. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 911 undefined on input line 183621. +ge 911 undefined on input line 183620. [911] -Underfull \hbox (badness 10000) in paragraph at lines 183795--183798 +Underfull \hbox (badness 10000) in paragraph at lines 183794--183797 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t @@ -77581,11 +77500,11 @@ [912] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 913 undefined on input line 183875. +ge 913 undefined on input line 183874. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LawTester.path' on pa -ge 913 undefined on input line 183914. +ge 913 undefined on input line 183913. Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! @@ -77593,7 +77512,7 @@ [913] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet.axisAABE' on - page 914 undefined on input line 184203. + page 914 undefined on input line 184202. [914] @@ -77604,11 +77523,11 @@ [919] [920] [921] -Underfull \hbox (badness 10000) in paragraph at lines 185929--185932 +Underfull \hbox (badness 10000) in paragraph at lines 185928--185931 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 186078--186081 +Underfull \hbox (badness 10000) in paragraph at lines 186077--186080 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77620,37 +77539,37 @@ [927] [928] [929] -Underfull \hbox (badness 10000) in paragraph at lines 187973--187976 +Underfull \hbox (badness 10000) in paragraph at lines 187972--187975 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [930] [931] [932] -Underfull \hbox (badness 10000) in paragraph at lines 188836--188839 +Underfull \hbox (badness 10000) in paragraph at lines 188835--188838 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [933] [934] [935] -Underfull \hbox (badness 10000) in paragraph at lines 189706--189708 +Underfull \hbox (badness 10000) in paragraph at lines 189705--189707 \TU/lmr/m/n/10 torX)r2=VectorX() [, (VectorX)r3=VectorX() [, (VectorX)r4=Vector X() [, (Vec- -Underfull \hbox (badness 10000) in paragraph at lines 189706--189708 +Underfull \hbox (badness 10000) in paragraph at lines 189705--189707 \TU/lmr/m/n/10 torX)r5=VectorX() [, (VectorX)r6=VectorX() [, (VectorX)r7=Vector X() [, (Vec- [936] -Underfull \hbox (badness 10000) in paragraph at lines 189828--189831 +Underfull \hbox (badness 10000) in paragraph at lines 189827--189830 \TU/lmr/m/n/10 Compute SVD decomposition of square matrix, retuns (U,S,V) such that [937] [938] [939] -Underfull \hbox (badness 10000) in paragraph at lines 190620--190623 +Underfull \hbox (badness 10000) in paragraph at lines 190619--190622 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77658,26 +77577,26 @@ [941] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.MindlinPhys.vMeniscus -' on page 942 undefined on input line 191241. +' on page 942 undefined on input line 191240. [942] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_L3Geom_FrictPhys -_HertzMindlin' on page 943 undefined on input line 191306. +_HertzMindlin' on page 943 undefined on input line 191305. [943] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_L3Geom_FrictPhys -_HertzMindlin' on page 944 undefined on input line 191730. +_HertzMindlin' on page 944 undefined on input line 191729. [944] [945] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Law2_L3Geom_FrictPhys -_HertzMindlin' on page 946 undefined on input line 192245. +_HertzMindlin' on page 946 undefined on input line 192244. [946] @@ -77686,10 +77605,10 @@ [949] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.LevelSet.surfaceNodes -' on page 950 undefined on input line 193074. +' on page 950 undefined on input line 193073. -Underfull \hbox (badness 10000) in paragraph at lines 193208--193211 +Underfull \hbox (badness 10000) in paragraph at lines 193207--193210 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77701,59 +77620,59 @@ [955] LaTeX Warning: Hyper reference `yade.timing:' on page 956 undefined on input li -ne 194546. +ne 194545. [956] [957] -Underfull \hbox (badness 10000) in paragraph at lines 195129--195132 +Underfull \hbox (badness 10000) in paragraph at lines 195128--195131 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [958] LaTeX Warning: Hyper reference `yade.gridpfacet:' on page 959 undefined on inpu -t line 195385. +t line 195384. [959] -Underfull \hbox (badness 10000) in paragraph at lines 195697--195700 +Underfull \hbox (badness 10000) in paragraph at lines 195696--195699 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [960] -Underfull \hbox (badness 10000) in paragraph at lines 195833--195836 +Underfull \hbox (badness 10000) in paragraph at lines 195832--195835 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [961] -Underfull \hbox (badness 10000) in paragraph at lines 195951--195954 +Underfull \hbox (badness 10000) in paragraph at lines 195950--195953 \TU/lmr/m/n/10 triaxialCompression.py[][] explain usage and inputs of Peri3dCon troller, [][]exam- [962] -Underfull \hbox (badness 10000) in paragraph at lines 196014--196017 +Underfull \hbox (badness 10000) in paragraph at lines 196013--196016 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [963] [964] -Underfull \hbox (badness 10000) in paragraph at lines 196555--196558 +Underfull \hbox (badness 10000) in paragraph at lines 196554--196557 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [965] -Underfull \hbox (badness 10000) in paragraph at lines 196829--196832 +Underfull \hbox (badness 10000) in paragraph at lines 196828--196831 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 7814) in paragraph at lines 196868--196871 +Underfull \hbox (badness 7814) in paragraph at lines 196867--196870 \TU/lmr/m/n/10 Desired stress or strain values (depending on stressMask), strai ns defined as [966] [967] -Underfull \hbox (badness 10000) in paragraph at lines 197187--197190 +Underfull \hbox (badness 10000) in paragraph at lines 197186--197189 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77761,102 +77680,102 @@ [969] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Sphere2AABB' on page -970 undefined on input line 197734. +970 undefined on input line 197733. [970] -Underfull \hbox (badness 10000) in paragraph at lines 197922--197925 +Underfull \hbox (badness 10000) in paragraph at lines 197921--197924 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [971] [972] -Underfull \hbox (badness 10000) in paragraph at lines 198266--198269 +Underfull \hbox (badness 10000) in paragraph at lines 198265--198268 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [973] [974] -Underfull \hbox (badness 10000) in paragraph at lines 198831--198834 +Underfull \hbox (badness 10000) in paragraph at lines 198830--198833 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [975] -Underfull \hbox (badness 10000) in paragraph at lines 199006--199009 +Underfull \hbox (badness 10000) in paragraph at lines 199005--199008 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [976] [977] -Underfull \hbox (badness 10000) in paragraph at lines 199455--199458 +Underfull \hbox (badness 10000) in paragraph at lines 199454--199457 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [978] [979] -Underfull \hbox (badness 10000) in paragraph at lines 199989--199992 +Underfull \hbox (badness 10000) in paragraph at lines 199988--199991 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [980] -Underfull \hbox (badness 10000) in paragraph at lines 200237--200240 +Underfull \hbox (badness 10000) in paragraph at lines 200236--200239 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [981] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Plane' on page 982 un -defined on input line 200411. +defined on input line 200410. [982] -Underfull \hbox (badness 10000) in paragraph at lines 200497--200500 +Underfull \hbox (badness 10000) in paragraph at lines 200496--200499 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [983] -Underfull \hbox (badness 10000) in paragraph at lines 200691--200694 +Underfull \hbox (badness 10000) in paragraph at lines 200690--200693 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [984] -Underfull \hbox (badness 10000) in paragraph at lines 200976--200979 +Underfull \hbox (badness 10000) in paragraph at lines 200975--200978 \TU/lmr/m/n/10 Return incident velocity of the interaction (see also [][]\TU/lm r/m/it/10 Ig2_-Sphere_-Sphere_-Sc- [985] [986] -Underfull \hbox (badness 10000) in paragraph at lines 201589--201592 +Underfull \hbox (badness 10000) in paragraph at lines 201588--201591 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [987] [988] [989] -Underfull \hbox (badness 10000) in paragraph at lines 202211--202214 +Underfull \hbox (badness 10000) in paragraph at lines 202210--202213 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [990] -Underfull \hbox (badness 10000) in paragraph at lines 202571--202574 +Underfull \hbox (badness 10000) in paragraph at lines 202570--202573 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [991] [992] -Underfull \hbox (badness 10000) in paragraph at lines 202900--202903 +Underfull \hbox (badness 10000) in paragraph at lines 202899--202902 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [993] [994] [995] -Underfull \hbox (badness 10000) in paragraph at lines 203555--203558 +Underfull \hbox (badness 10000) in paragraph at lines 203554--203557 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.mpy.mpirun' on page 9 -96 undefined on input line 203681. +96 undefined on input line 203680. [996] @@ -77864,52 +77783,52 @@ [998] [999] [1000] -Underfull \hbox (badness 10000) in paragraph at lines 204916--204919 +Underfull \hbox (badness 10000) in paragraph at lines 204915--204918 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1001] [1002] [1003] -Underfull \hbox (badness 10000) in paragraph at lines 205581--205584 +Underfull \hbox (badness 10000) in paragraph at lines 205580--205583 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1004] [1005] [1006] -Underfull \hbox (badness 10000) in paragraph at lines 206412--206415 +Underfull \hbox (badness 10000) in paragraph at lines 206411--206414 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1007] [1008] -Underfull \hbox (badness 10000) in paragraph at lines 206737--206740 +Underfull \hbox (badness 10000) in paragraph at lines 206736--206739 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1009] -Underfull \hbox (badness 10000) in paragraph at lines 206911--206914 +Underfull \hbox (badness 10000) in paragraph at lines 206910--206913 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 10000) in paragraph at lines 207073--207076 +Underfull \hbox (badness 10000) in paragraph at lines 207072--207075 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1010] [1011] -Underfull \hbox (badness 10000) in paragraph at lines 207404--207407 +Underfull \hbox (badness 10000) in paragraph at lines 207403--207406 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1012] [1013] -Underfull \hbox (badness 10000) in paragraph at lines 207783--207786 +Underfull \hbox (badness 10000) in paragraph at lines 207782--207785 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if -Underfull \hbox (badness 7944) in paragraph at lines 207822--207825 +Underfull \hbox (badness 7944) in paragraph at lines 207821--207824 \TU/lmr/m/n/10 A special type of compaction with imposed final porosity [][]\TU /lmr/m/it/10 TriaxialCompressio- @@ -77917,12 +77836,12 @@ [1015] [1016] [1017] -Underfull \hbox (badness 10000) in paragraph at lines 208703--208706 +Underfull \hbox (badness 10000) in paragraph at lines 208702--208705 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1018] -Underfull \hbox (badness 10000) in paragraph at lines 209052--209055 +Underfull \hbox (badness 10000) in paragraph at lines 209051--209054 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77931,7 +77850,7 @@ [1021] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.CapillaryTriaxialTest -' on page 1022 undefined on input line 209706. +' on page 1022 undefined on input line 209705. [1022] @@ -77939,33 +77858,33 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 1023 undefined on input line 209795. +ler.sigma_iso' on page 1023 undefined on input line 209794. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 1023 undefined on input line 209795. +ler.sigma_iso' on page 1023 undefined on input line 209794. Missing character: There is no ∈ (U+2208) in font [lmroman10-regular]:mapping=t ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma_iso' on page 1023 undefined on input line 209796. +ler.sigma_iso' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.isAxisymetric' on page 1023 undefined on input line 209796. +ler.isAxisymetric' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma1' on page 1023 undefined on input line 209796. +ler.sigma1' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma2' on page 1023 undefined on input line 209796. +ler.sigma2' on page 1023 undefined on input line 209795. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TriaxialStressControl -ler.sigma3' on page 1023 undefined on input line 209796. +ler.sigma3' on page 1023 undefined on input line 209795. [1023] @@ -77975,22 +77894,22 @@ Missing character: There is no ⁻ (U+207B) in font [lmroman10-regular]:mapping=t ex-text;! -Underfull \hbox (badness 10000) in paragraph at lines 210596--210599 +Underfull \hbox (badness 10000) in paragraph at lines 210595--210598 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1027] [1028] -Underfull \hbox (badness 10000) in paragraph at lines 210840--210843 +Underfull \hbox (badness 10000) in paragraph at lines 210839--210842 []\TU/lmr/m/n/10 Potential applicatons are presented in [[]], and examples sect ion (see -Underfull \hbox (badness 10000) in paragraph at lines 210929--210932 +Underfull \hbox (badness 10000) in paragraph at lines 210928--210931 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if [1029] -Underfull \hbox (badness 10000) in paragraph at lines 211120--211123 +Underfull \hbox (badness 10000) in paragraph at lines 211119--211122 \TU/lmr/m/n/10 Cumulative time in nanoseconds this Engine took to run (only use d if @@ -77998,25 +77917,25 @@ [1031] LaTeX Warning: Hyper reference `yade.utils:yade.utils.bodyStressTensors' on pag -e 1032 undefined on input line 211411. +e 1032 undefined on input line 211410. [1032] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.JCFpmState.tensBreak' - on page 1033 undefined on input line 211434. + on page 1033 undefined on input line 211433. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.JCFpmState.shearBreak -' on page 1033 undefined on input line 211434. +' on page 1033 undefined on input line 211433. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ThermalEngine' on pag -e 1033 undefined on input line 211446. +e 1033 undefined on input line 211445. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PartialSatClayEngine' - on page 1033 undefined on input line 211470. + on page 1033 undefined on input line 211469. [1033] @@ -78046,7 +77965,7 @@ [1057] [1058] [1059] -Underfull \hbox (badness 5091) in paragraph at lines 218634--218638 +Underfull \hbox (badness 5091) in paragraph at lines 218633--218637 \TU/lmr/m/n/10 Add data from arguments name1=value1,name2=value2 to yade.plot.d ata. (the old @@ -78064,36 +77983,36 @@ Missing character: There is no θ (U+03B8) in font [lmmono10-italic]:! [1067] -Underfull \hbox (badness 10000) in paragraph at lines 219739--219741 +Underfull \hbox (badness 10000) in paragraph at lines 219738--219740 []\TU/lmr/m/n/10 Returned dictionary always containing keys ‘type’ (one of [1068] -Underfull \hbox (badness 5064) in paragraph at lines 219848--219850 +Underfull \hbox (badness 5064) in paragraph at lines 219847--219849 \TU/lmr/m/n/10 a list of 6 PotentialBlock Bodies enclosing the packing, in the order [1069] [1070] -Underfull \vbox (badness 1442) detected at line 220160 +Underfull \vbox (badness 1442) detected at line 220159 [1071] LaTeX Warning: Hyper reference `yade.utils:yade.utils.PWaveTimeStep' on page 10 -72 undefined on input line 220204. +72 undefined on input line 220203. [1072] -Underfull \hbox (badness 10000) in paragraph at lines 220426--220428 +Underfull \hbox (badness 10000) in paragraph at lines 220425--220427 \TU/lmr/m/n/10 a list of 6 wall Bodies enclosing the packing, in the order [1073] [1074] [1075] [1076] -Underfull \hbox (badness 10000) in paragraph at lines 220949--220954 +Underfull \hbox (badness 10000) in paragraph at lines 220948--220953 \TU/lmr/m/n/10 Returns (uniformly distributed) random orientation. Taken from -Underfull \hbox (badness 5388) in paragraph at lines 221004--221010 +Underfull \hbox (badness 5388) in paragraph at lines 221003--221009 []\TU/lmr/m/n/10 O.tags[‘description’]=… # assigns the description column; migh t be synthe- @@ -78103,11 +78022,11 @@ Missing character: There is no ∈ (U+2208) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.utils:yade.utils.approxSectionArea' on pag -e 1080 undefined on input line 221382. +e 1080 undefined on input line 221381. LaTeX Warning: Hyper reference `yade.utils:yade.utils.voxelPorosity' on page 10 -80 undefined on input line 221416. +80 undefined on input line 221415. [1080] @@ -78118,19 +78037,19 @@ Missing character: There is no ∈ (U+2208) in font [lmmono10-italic]:! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TesselationWrapper' o -n page 1082 undefined on input line 221743. +n page 1082 undefined on input line 221742. [1082] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.cart2spher' on page 1 -083 undefined on input line 221841. +083 undefined on input line 221840. [1083] [1084] [1085] -Underfull \hbox (badness 10000) in paragraph at lines 222174--222187 +Underfull \hbox (badness 10000) in paragraph at lines 222173--222186 []\TU/lmr/m/n/10 Arguments are: vCell : volume of a cell, all slices combined. (e.g. @@ -78141,35 +78060,35 @@ [1090] [1091] [1092] -Underfull \hbox (badness 10000) in paragraph at lines 223380--223382 +Underfull \hbox (badness 10000) in paragraph at lines 223379--223381 []\TU/lmr/m/n/10 Example: [][]examples/packs/packs.py[][], usage of LSMGenGeo l ibrary in [][]exam- -Underfull \hbox (badness 10000) in paragraph at lines 223388--223390 +Underfull \hbox (badness 10000) in paragraph at lines 223387--223389 [][][]$[][][][] [] [] [] [][][] [] [][][][][][] [] [][][] [] [][] [] [][][][][] [][][][] [] [][][][][][] [] [][][] [] [][][][][][][] [] [][][][][][][][][] [] [ ][][][] [] -Underfull \hbox (badness 10000) in paragraph at lines 223448--223450 +Underfull \hbox (badness 10000) in paragraph at lines 223447--223449 []\TU/lmr/m/n/10 Example: [][]examples/packs/packs.py[][], usage of LSMGenGeo l ibrary in [][]exam- [1093] -Underfull \hbox (badness 10000) in paragraph at lines 223456--223458 +Underfull \hbox (badness 10000) in paragraph at lines 223455--223457 [][][]$[][][][] [] [] [] [][][] [] [][][][][][] [] [][][] [] [][] [] [][][][][] [][][][] [] [][][][][][] [] [][][] [] [][][][][][][] [] [][][][][][][][][] [] [ ][][][] [] [1094] [1095] -Underfull \hbox (badness 10000) in paragraph at lines 223859--223861 +Underfull \hbox (badness 10000) in paragraph at lines 223858--223860 \TU/lmtt/m/n/10 z2_-x3_-y3_-z3'``(default), ``'x1_-y1_-z1_-x2_-y2_-z2_-x3_-y3_- z3_-matId'\TU/lmr/m/n/10 , [1096] LaTeX Warning: Hyper reference `yade.polyhedra_utils:yade.polyhedra_utils.polyh -edra' on page 1097 undefined on input line 223923. +edra' on page 1097 undefined on input line 223922. [1097] @@ -78180,31 +78099,31 @@ [1102] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FlowEngine' on page 1 -103 undefined on input line 224512. +103 undefined on input line 224511. -Underfull \hbox (badness 5475) in paragraph at lines 224523--224525 +Underfull \hbox (badness 5475) in paragraph at lines 224522--224524 []\TU/lmr/m/n/10 ENABLE_-MASK_-ARBITRARY: enable arbitrary precision of bitmask variables (only LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PartialSatClayEngine' - on page 1103 undefined on input line 224544. + on page 1103 undefined on input line 224543. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.FlowEngine' on page 1 -103 undefined on input line 224548. +103 undefined on input line 224547. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.PotentialBlock' on pa -ge 1103 undefined on input line 224552. +ge 1103 undefined on input line 224551. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.ThermalEngine' on pag -e 1103 undefined on input line 224568. +e 1103 undefined on input line 224567. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.TwoPhaseFlowEngine' o -n page 1103 undefined on input line 224572. +n page 1103 undefined on input line 224571. [1103] @@ -78214,7 +78133,7 @@ ex-text;! [1106] -Underfull \hbox (badness 6380) in paragraph at lines 224889--224891 +Underfull \hbox (badness 6380) in paragraph at lines 224888--224890 []\TU/lmr/m/n/10 V. Šmilauer et al. (2021), Yade Documentation 3rd ed. The Yade Project. @@ -78223,10 +78142,10 @@ Chapter 3. [1109] -Underfull \hbox (badness 10000) in paragraph at lines 225108--225108 +Underfull \hbox (badness 10000) in paragraph at lines 225107--225107 []\TU/lmss/m/n/10 mod- -Underfull \hbox (badness 10000) in paragraph at lines 225108--225108 +Underfull \hbox (badness 10000) in paragraph at lines 225107--225107 []\TU/lmtt/m/n/10 libQtGUI.so\TU/lmr/m/n/10 , [1110] @@ -78234,76 +78153,76 @@ [1112] LaTeX Warning: Hyper reference `yade.log:' on page 1113 undefined on input line - 225359. + 225358. -Underfull \hbox (badness 10000) in paragraph at lines 225410--225412 +Underfull \hbox (badness 10000) in paragraph at lines 225409--225411 []|\TU/lmss/m/n/10 op- [1113] [1114] [1115] -Underfull \hbox (badness 6825) in paragraph at lines 225686--225690 +Underfull \hbox (badness 6825) in paragraph at lines 225685--225689 []|\TU/lmr/m/n/10 Creates logger static variable (with name -Underfull \hbox (badness 10000) in paragraph at lines 225691--225693 +Underfull \hbox (badness 10000) in paragraph at lines 225690--225692 []|\TU/lmtt/m/n/10 TEMPLATE_-CREATE_- -Underfull \hbox (badness 6825) in paragraph at lines 225694--225698 +Underfull \hbox (badness 6825) in paragraph at lines 225693--225697 []|\TU/lmr/m/n/10 Creates logger static variable (with name [1116] Overfull \vbox (27.55235pt too high) has occurred while \output is active [1117] [1118] -Underfull \hbox (badness 10000) in paragraph at lines 225907--225909 +Underfull \hbox (badness 10000) in paragraph at lines 225906--225908 []\TU/lmr/m/n/10 Inside \TU/lmtt/m/n/10 O.engines \TU/lmr/m/n/10 there has to b e a call at the end of the loop to [1119] [1120] -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 []\TU/lmss/m/n/10 dispatch -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 []\TU/lmss/m/n/10 created -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 BoundDis- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 BoundFunc- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IGeomDis- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IGeomFunc- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IPhysDis- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IPhysFunc- -Underfull \hbox (badness 5578) in paragraph at lines 226186--226186 +Underfull \hbox (badness 5578) in paragraph at lines 226185--226185 []\TU/lmr/m/n/10 2 (asymet- -Underfull \hbox (badness 10000) in paragraph at lines 226186--226186 +Underfull \hbox (badness 10000) in paragraph at lines 226185--226185 [][][]\TU/lmr/m/it/10 IGeom[][] [1121] [1122] LaTeX Warning: Hyper reference `yade.utils:' on page 1123 undefined on input li -ne 226298. +ne 226297. -Underfull \hbox (badness 6396) in paragraph at lines 226358--226360 +Underfull \hbox (badness 6396) in paragraph at lines 226357--226359 \TU/lmr/m/n/10 To link to an inheritance graph of some base class a [][]\TU/lmr /m/it/10 global anchor[][] \TU/lmr/m/n/10 is created -Underfull \hbox (badness 10000) in paragraph at lines 226358--226360 +Underfull \hbox (badness 10000) in paragraph at lines 226357--226359 \TU/lmr/m/n/10 with name \TU/lmtt/m/n/10 inheritanceGraph* \TU/lmr/m/n/10 added in front of the class name, for example @@ -78312,7 +78231,7 @@ [1125] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Se3r' on page 1126 un -defined on input line 226569. +defined on input line 226568. [1126] @@ -78320,18 +78239,18 @@ [1128] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.preProce -ssAttributes' on page 1129 undefined on input line 226756. +ssAttributes' on page 1129 undefined on input line 226755. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.postProc -essAttributes' on page 1129 undefined on input line 226756. +essAttributes' on page 1129 undefined on input line 226755. -Underfull \hbox (badness 10000) in paragraph at lines 226755--226757 +Underfull \hbox (badness 10000) in paragraph at lines 226754--226756 []\TU/lmr/m/n/10 Yade also provides callback for before/after (de) serializatio n, virtual functions \TU/lmr/m/it/10 Serial- -Underfull \hbox (badness 10000) in paragraph at lines 226755--226757 +Underfull \hbox (badness 10000) in paragraph at lines 226754--226756 \TU/lmr/m/it/10 izable::preProcessAttributes \TU/lmr/m/n/10 and \TU/lmr/m/it/10 Serializable::postProcessAttributes\TU/lmr/m/n/10 , which receive one \TU/lmtt /m/n/10 bool @@ -78341,22 +78260,22 @@ [1130] [1131] -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 [1132] -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 [1133] -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 -Underfull \vbox (badness 10000) detected at line 227087 +Underfull \vbox (badness 10000) detected at line 227086 [1134] -Overfull \vbox (0.971pt too high) detected at line 227123 +Overfull \vbox (0.971pt too high) detected at line 227122 [1135] [1136] @@ -78368,7 +78287,7 @@ [1142] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Indexable' on page 11 -43 undefined on input line 227645. +43 undefined on input line 227644. [1143] @@ -78376,8 +78295,6 @@ [1145] [1146] [1147] -Overfull \vbox (2.09308pt too high) detected at line 227994 - [1148] [1149] Missing character: There is no μ (U+03BC) in font [lmmono10-regular]:! @@ -78402,11 +78319,11 @@ ex-text;! LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.OpenGLRenderingEngine -' on page 1151 undefined on input line 228147. +' on page 1151 undefined on input line 228146. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.OpenGLRenderingEngine -' on page 1151 undefined on input line 228172. +' on page 1151 undefined on input line 228171. [1151] @@ -78420,49 +78337,49 @@ [1156] LaTeX Warning: Hyper reference `yade.utils:yade.utils.createInteraction' on pag -e 1157 undefined on input line 228593. +e 1157 undefined on input line 228592. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Material.stateTypeOk' - on page 1157 undefined on input line 228611. + on page 1157 undefined on input line 228610. [1157] LaTeX Warning: Hyper reference `yade.qt:yade.qt.Controller' on page 1158 undefi -ned on input line 228650. +ned on input line 228649. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.initializers' o -n page 1158 undefined on input line 228691. +n page 1158 undefined on input line 228690. [1158] LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Omega.initializers' o -n page 1159 undefined on input line 228757. +n page 1159 undefined on input line 228756. +[1159] + LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.clone' o -n page 1159 undefined on input line 228824. +n page 1160 undefined on input line 228823. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.updateEx -istingAttrs' on page 1159 undefined on input line 228824. +istingAttrs' on page 1160 undefined on input line 228823. LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.Serializable.pyDictCu -stom' on page 1159 undefined on input line 228824. +stom' on page 1160 undefined on input line 228823. -[1159] - LaTeX Warning: Hyper reference `yade.wrapper:yade.wrapper.pyGenericPotential' o -n page 1160 undefined on input line 228846. +n page 1160 undefined on input line 228845. LaTeX Warning: Hyper reference `yade.minieigenHP:' on page 1160 undefined on in -put line 228876. +put line 228875. [1160] @@ -78476,35 +78393,35 @@ [1168] Chapter 4. -Underfull \hbox (badness 7907) in paragraph at lines 229534--229537 +Underfull \hbox (badness 7907) in paragraph at lines 229533--229536 \TU/lmr/m/n/10 A number of example scripts can be found in Yade sources, see [] \TU/lmr/bx/n/10 ‘the OpenFoam -Underfull \hbox (badness 10000) in paragraph at lines 229542--229544 +Underfull \hbox (badness 10000) in paragraph at lines 229541--229543 []\TU/lmr/m/n/10 An older version of the coupling, which was using OpenFoam6, i s archived -Underfull \hbox (badness 10000) in paragraph at lines 229542--229544 +Underfull \hbox (badness 10000) in paragraph at lines 229541--229543 \TU/lmr/m/n/10 in branch []\TU/lmr/bx/n/10 ‘FOAM6couplingArchive