Diff of the two buildlogs: -- --- b1/build.log 2025-07-28 13:45:39.285566317 +0000 +++ b2/build.log 2025-07-28 14:08:33.551149229 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jul 28 01:27:36 -12 2025 -I: pbuilder-time-stamp: 1753709256 +I: Current time: Mon Aug 31 10:08:42 +14 2026 +I: pbuilder-time-stamp: 1788120522 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4045014/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 30 20:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='6a8b10b717224879abd68cbef8b9d7c7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4045014' - PS1='# ' - PS2='> ' + INVOCATION_ID=f3912fe3c4f2457ab7f1b83c21a207a8 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1675563 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9XxG18rI/pbuilderrc_jc0G --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9XxG18rI/b1 --logfile b1/build.log exonerate_2.4.0-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9XxG18rI/pbuilderrc_vquS --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9XxG18rI/b2 --logfile b2/build.log exonerate_2.4.0-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4045014/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -185,7 +217,7 @@ Get: 70 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5+20250216-2 [96.1 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5+20250216-2 [340 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-6 [155 kB] -Fetched 26.1 MB in 0s (157 MB/s) +Fetched 26.1 MB in 0s (88.7 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -430,8 +462,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Jul 28 13:28:00 UTC 2025. -Universal Time is now: Mon Jul 28 13:28:00 UTC 2025. +Local time is now: Sun Aug 30 20:09:20 UTC 2026. +Universal Time is now: Sun Aug 30 20:09:20 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:arm64 (48.0-2) ... @@ -501,7 +533,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/exonerate-2.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../exonerate_2.4.0-5_source.changes +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/exonerate-2.4.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../exonerate_2.4.0-5_source.changes dpkg-buildpackage: info: source package exonerate dpkg-buildpackage: info: source version 2.4.0-5 dpkg-buildpackage: info: source distribution unstable @@ -699,6 +735,7 @@ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o vfsm.o vfsm.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o recyclebin.test.o recyclebin.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.test.o sparsecache.test.c +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.o sparsecache.c rangetree.c: In function 'RangeTree_insert_recent': rangetree.c:151:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] 151 | g_tree_traverse(rt->recent_data, RangeTree_insert_recent_collect, @@ -709,7 +746,6 @@ /usr/include/glib-2.0/glib/gtree.h:148:10: note: declared here 148 | void g_tree_traverse (GTree *tree, | ^~~~~~~~~~~~~~~ -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o sparsecache.o sparsecache.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dejavu.test.o dejavu.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o dejavu.o dejavu.c In file included from /usr/include/glib-2.0/glib.h:64, @@ -784,13 +820,9 @@ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splaytree.o splaytree.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o noitree.test.o noitree.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o noitree.o noitree.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fsm.test fsm.test.o fsm.o recyclebin.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o matrix.test matrix.test.o matrix.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o slist.test slist.test.o slist.o recyclebin.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o vfsm.test vfsm.test.o vfsm.o -lm -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o recyclebin.test recyclebin.test.o recyclebin.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sparsecache.test sparsecache.test.o sparsecache.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o pqueue.test pqueue.test.o pqueue.o recyclebin.o -lglib-2.0 bitarray.c: In function 'BitArray_read': bitarray.c:83:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 83 | fread(ba->data, sizeof(guchar), size, fp); @@ -799,11 +831,15 @@ bitarray.c:189:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 189 | fread(&num, sizeof(guint64), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o recyclebin.test recyclebin.test.o recyclebin.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sparsecache.test sparsecache.test.o sparsecache.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fsm.test fsm.test.o fsm.o recyclebin.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o pqueue.test pqueue.test.o pqueue.o recyclebin.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o rangetree.test rangetree.test.o rangetree.o recyclebin.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o dejavu.test dejavu.test.o dejavu.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o bitarray.test bitarray.test.o bitarray.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o noitree.test noitree.test.o noitree.o recyclebin.o splaytree.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o dejavu.test dejavu.test.o dejavu.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o splaytree.test splaytree.test.o splaytree.o recyclebin.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o noitree.test noitree.test.o noitree.o recyclebin.o splaytree.o -lglib-2.0 make[3]: Leaving directory '/build/reproducible-path/exonerate-2.4.0/src/struct' Making all in general make[3]: Entering directory '/build/reproducible-path/exonerate-2.4.0/src/general' @@ -866,6 +902,19 @@ /usr/include/glib-2.0/glib/gtree.h:148:10: note: declared here 148 | void g_tree_traverse (GTree *tree, | ^~~~~~~~~~~~~~~ +jobqueue.test.c: In function 'main': +jobqueue.test.c:34:13: warning: Deprecated pre-processor symbol + 34 | if(!g_thread_supported()) + | ^~~~~~~~~~~~~~~~~ +jobqueue.test.c:35:9: warning: 'g_thread_init' is deprecated [-Wdeprecated-declarations] + 35 | g_thread_init(NULL); + | ^~~~~~~~~~~~~ +In file included from /usr/include/glib-2.0/glib.h:115, + from jobqueue.h:23, + from jobqueue.test.c:17: +/usr/include/glib-2.0/glib/deprecated/gthread.h:271:10: note: declared here + 271 | void g_thread_init (gpointer vtable); + | ^~~~~~~~~~~~~ socket.c: In function 'Socket_send': socket.c:168:13: warning: Deprecated pre-processor symbol: replace with "g_string_append_printf" 168 | g_string_sprintfa(full_msg, "linecount: %d\n", line_count+1); @@ -894,24 +943,11 @@ socket.c:142:9: note: in expansion of macro 'g_string_free' 142 | g_string_free(string, FALSE); | ^~~~~~~~~~~~~ -jobqueue.test.c: In function 'main': -jobqueue.test.c:34:13: warning: Deprecated pre-processor symbol - 34 | if(!g_thread_supported()) - | ^~~~~~~~~~~~~~~~~ -jobqueue.test.c:35:9: warning: 'g_thread_init' is deprecated [-Wdeprecated-declarations] - 35 | g_thread_init(NULL); - | ^~~~~~~~~~~~~ -In file included from /usr/include/glib-2.0/glib.h:115, - from jobqueue.h:23, - from jobqueue.test.c:17: -/usr/include/glib-2.0/glib/deprecated/gthread.h:271:10: note: declared here - 271 | void g_thread_init (gpointer vtable); - | ^~~~~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o lineparse.test lineparse.test.o lineparse.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o jobqueue.test jobqueue.test.o jobqueue.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o threadref.test threadref.test.o threadref.o -lpthread -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o socket.test socket.test.o socket.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o jobqueue.test jobqueue.test.o jobqueue.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o compoundfile.test compoundfile.test.o compoundfile.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o socket.test socket.test.o socket.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o argument.test argument.test.o argument.o -lglib-2.0 make[3]: Leaving directory '/build/reproducible-path/exonerate-2.4.0/src/general' Making all in sequence @@ -927,11 +963,21 @@ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o splice.test.o splice.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o alphabet.test.o alphabet.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.test.o codonsubmat.test.c -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.o codonsubmat.c +sequence.c: In function 'Sequence_destroy_annotation_tree': +sequence.c:97:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] + 97 | g_tree_traverse(tree, Sequence_destroy_annotation_data, + | ^~~~~~~~~~~~~~~ +In file included from /usr/include/glib-2.0/glib.h:95, + from sequence.h:24, + from sequence.c:21: +/usr/include/glib-2.0/glib/gtree.h:148:10: note: declared here + 148 | void g_tree_traverse (GTree *tree, + | ^~~~~~~~~~~~~~~ alphabet.c: In function 'Alphabet_name_get_type': alphabet.c:317:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] 317 | if(!g_strcasecmp(name, dna_string[i])) | ^~ +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o codonsubmat.o codonsubmat.c In file included from /usr/include/glib-2.0/glib/gstring.h:37, from /usr/include/glib-2.0/glib/giochannel.h:36, from /usr/include/glib-2.0/glib.h:56, @@ -952,16 +998,6 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ -sequence.c: In function 'Sequence_destroy_annotation_tree': -sequence.c:97:5: warning: 'g_tree_traverse' is deprecated [-Wdeprecated-declarations] - 97 | g_tree_traverse(tree, Sequence_destroy_annotation_data, - | ^~~~~~~~~~~~~~~ -In file included from /usr/include/glib-2.0/glib.h:95, - from sequence.h:24, - from sequence.c:21: -/usr/include/glib-2.0/glib/gtree.h:148:10: note: declared here - 148 | void g_tree_traverse (GTree *tree, - | ^~~~~~~~~~~~~~~ splice.c: In function 'SplicePredictor_parse_data': splice.c:146:17: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] 146 | if(!g_strcasecmp(word, "splice")) @@ -988,11 +1024,11 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o alphabet.test alphabet.test.o alphabet.o ../../src/general/argument.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o submat.test submat.test.o submat.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o splice.test splice.test.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o alphabet.test alphabet.test.o alphabet.o ../../src/general/argument.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sequence.test sequence.test.o sequence.o alphabet.o translate.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o translate.test translate.test.o translate.o ../../src/general/argument.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o splice.test splice.test.o splice.o ../../src/struct/matrix.o ../../src/struct/sparsecache.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o codonsubmat.test codonsubmat.test.o codonsubmat.o ../../src/general/argument.o -lm -lglib-2.0 make[3]: Leaving directory '/build/reproducible-path/exonerate-2.4.0/src/sequence' Making all in comparison @@ -1254,8 +1290,8 @@ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 | index->header->dataset_path_len, index->fp); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastapipe.test fastapipe.test.o fastapipe.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastadb.test fastadb.test.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastapipe.test fastapipe.test.o fastapipe.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o dataset.test dataset.test.o dataset.o fastadb.o ../../src/general/compoundfile.o ../../src/struct/bitarray.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o index.test index.test.o index.o fastadb.o dataset.o ../../src/general/compoundfile.o ../../src/general/threadref.o ../../src/struct/bitarray.o ../../src/struct/vfsm.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/struct/splaytree.o ../../src/struct/noitree.o ../../src/comparison/wordhood.o ../../src/comparison/hspset.o ../../src/comparison/match.o ../../src/sequence/submat.o ../../src/sequence/codonsubmat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 make[3]: Leaving directory '/build/reproducible-path/exonerate-2.4.0/src/database' @@ -1274,7 +1310,29 @@ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.o layout.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.o viterbi.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o subopt.o subopt.c -alignment.c: In function 'AlignmentView_add_SPLICE_SITE': +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.o cgutil.c +In file included from /usr/include/glib-2.0/glib/giochannel.h:36, + from /usr/include/glib-2.0/glib.h:56, + from c4.h:23, + from c4.c:16: +c4.c: In function 'break_string': +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.test.o layout.test.c +/usr/include/glib-2.0/glib/gstring.h:76:5: warning: ignoring return value of 'g_string_free_and_steal' declared with attribute 'warn_unused_result' [-Wunused-result] + 72 | (__builtin_constant_p (free_segment) ? \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 73 | ((free_segment) ? \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 74 | (g_string_free) ((str), (free_segment)) : \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 75 | g_string_free_and_steal (str)) \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 76 | : \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 77 | (g_string_free) ((str), (free_segment))) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +c4.c:1236:5: note: in expansion of macro 'g_string_free' + 1236 | g_string_free(s, FALSE); + | ^~~~~~~~~~~~~ In file included from /usr/include/glib-2.0/glib/giochannel.h:36, from /usr/include/glib-2.0/glib.h:56, from codegen.h:23, @@ -1296,6 +1354,26 @@ codegen.c:55:5: note: in expansion of macro 'g_string_free' 55 | g_string_free(file_name_str, FALSE); | ^~~~~~~~~~~~~ +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.test.o viterbi.test.c +codegen.c: In function 'Codegen_expand_format': +/usr/include/glib-2.0/glib/gstring.h:76:5: warning: ignoring return value of 'g_string_free_and_steal' declared with attribute 'warn_unused_result' [-Wunused-result] + 72 | (__builtin_constant_p (free_segment) ? \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 73 | ((free_segment) ? \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 74 | (g_string_free) ((str), (free_segment)) : \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 75 | g_string_free_and_steal (str)) \ + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 76 | : \ + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 77 | (g_string_free) ((str), (free_segment))) + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +codegen.c:154:5: note: in expansion of macro 'g_string_free' + 154 | g_string_free(str, FALSE); + | ^~~~~~~~~~~~~ +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.test.o opair.test.c +alignment.c: In function 'AlignmentView_add_SPLICE_SITE': alignment.c:660:9: warning: 'g_strdown' is deprecated [-Wdeprecated-declarations] 660 | g_strdown(qy_seq_string); | ^~~~~~~~~ @@ -1325,7 +1403,6 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:275:23: note: declared here 275 | gchar* g_strdown (gchar *string); | ^~~~~~~~~ -codegen.c: In function 'Codegen_expand_format': alignment.c: In function 'AlignmentView_add_SPLIT_CODON': alignment.c:987:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] 987 | g_strup(qy_codon); @@ -1333,22 +1410,6 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:277:23: note: declared here 277 | gchar* g_strup (gchar *string); | ^~~~~~~ -/usr/include/glib-2.0/glib/gstring.h:76:5: warning: ignoring return value of 'g_string_free_and_steal' declared with attribute 'warn_unused_result' [-Wunused-result] - 72 | (__builtin_constant_p (free_segment) ? \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 73 | ((free_segment) ? \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 74 | (g_string_free) ((str), (free_segment)) : \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 75 | g_string_free_and_steal (str)) \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 76 | : \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 77 | (g_string_free) ((str), (free_segment))) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -codegen.c:154:5: note: in expansion of macro 'g_string_free' - 154 | g_string_free(str, FALSE); - | ^~~~~~~~~~~~~ alignment.c:988:5: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] 988 | g_strup(tg_codon); | ^~~~~~~ @@ -1357,30 +1418,6 @@ | ^~~~~~~ In file included from /usr/include/glib-2.0/glib/giochannel.h:36, from /usr/include/glib-2.0/glib.h:56, - from c4.h:23, - from c4.c:16: -c4.c: In function 'break_string': -/usr/include/glib-2.0/glib/gstring.h:76:5: warning: ignoring return value of 'g_string_free_and_steal' declared with attribute 'warn_unused_result' [-Wunused-result] - 72 | (__builtin_constant_p (free_segment) ? \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 73 | ((free_segment) ? \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 74 | (g_string_free) ((str), (free_segment)) : \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 75 | g_string_free_and_steal (str)) \ - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 76 | : \ - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 77 | (g_string_free) ((str), (free_segment))) - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -c4.c:1236:5: note: in expansion of macro 'g_string_free' - 1236 | g_string_free(s, FALSE); - | ^~~~~~~~~~~~~ -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.o cgutil.c -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o layout.test.o layout.test.c -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o viterbi.test.o viterbi.test.c -In file included from /usr/include/glib-2.0/glib/giochannel.h:36, - from /usr/include/glib-2.0/glib.h:56, from viterbi.h:23, from viterbi.c:17: viterbi.c: In function 'Viterbi_expand_macro': @@ -1400,14 +1437,13 @@ viterbi.c:965:5: note: in expansion of macro 'g_string_free' 965 | g_string_free(str, FALSE); | ^~~~~~~~~~~~~ -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.test.o opair.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o opair.o opair.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o subopt.test.o subopt.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o cgutil.test.o cgutil.test.c gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o region.test region.test.o region.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o codegen.test codegen.test.o codegen.o ../../src/general/argument.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o layout.test layout.test.o layout.o ../../src/struct/matrix.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o subopt.test subopt.test.o subopt.o region.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o layout.test layout.test.o layout.o ../../src/struct/matrix.o -lglib-2.0 In function 'AlignmentView_add_FRAMESHIFT', inlined from 'AlignmentView_add_label_operation.isra' at alignment.c:1168:13: alignment.c:1058:31: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] @@ -1427,8 +1463,8 @@ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o c4.test c4.test.o c4.o region.o ../../src/struct/matrix.o ../../src/general/threadref.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o cgutil.test cgutil.test.o cgutil.o codegen.o c4.o region.o ../../src/general/argument.o ../../src/struct/matrix.o ../../src/general/threadref.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o alignment.test alignment.test.o alignment.o c4.o region.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o viterbi.test viterbi.test.o viterbi.o c4.o region.o alignment.o codegen.o layout.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o optimal.test optimal.test.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o viterbi.test viterbi.test.o viterbi.o c4.o region.o alignment.o codegen.o layout.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o opair.test opair.test.o opair.o optimal.o c4.o alignment.o codegen.o region.o layout.o viterbi.o subopt.o cgutil.o ../../src/struct/slist.o ../../src/struct/recyclebin.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/general/threadref.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o -lm -lglib-2.0 make[3]: Leaving directory '/build/reproducible-path/exonerate-2.4.0/src/c4' Making all in bsdp @@ -1458,10 +1494,10 @@ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o boundary.test.o boundary.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o scheduler.test.o scheduler.test.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/struct -I../../src/comparison -I../../src/sequence -I../../src/general -I../../src/c4 -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DGLIB_CFLAGS="\"-I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread \"" -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o straceback.test.o straceback.test.c -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o straceback.test straceback.test.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o lookahead.test lookahead.test.o lookahead.o -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o boundary.test boundary.test.o boundary.o ../../src/general/argument.o ../../src/c4/region.o -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o straceback.test straceback.test.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o sdp.test sdp.test.o sdp.o boundary.o scheduler.o lookahead.o straceback.o ../../src/struct/pqueue.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/hspset.o ../../src/comparison/comparison.o ../../src/comparison/wordhood.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o boundary.test boundary.test.o boundary.o ../../src/general/argument.o ../../src/c4/region.o -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o scheduler.test scheduler.test.o scheduler.o lookahead.o boundary.o straceback.o ../../src/struct/recyclebin.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/c4/c4.o ../../src/c4/alignment.o ../../src/c4/optimal.o ../../src/c4/codegen.o ../../src/c4/region.o ../../src/c4/layout.o ../../src/c4/viterbi.o ../../src/c4/subopt.o ../../src/c4/cgutil.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 make[3]: Leaving directory '/build/reproducible-path/exonerate-2.4.0/src/sdp' Making all in model @@ -1500,6 +1536,7 @@ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o edit_distance.test edit_distance.test.o edit_distance.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o affine.test affine.test.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o protein2dna.test protein2dna.test.o protein2dna.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ner.test ner.test.o ner.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 modeltype.c: In function 'Model_Type_from_string': modeltype.c:121:9: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] 121 | if(!g_strcasecmp(name[i], str)) @@ -1519,10 +1556,6 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ner.test ner.test.o ner.o affine.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ungapped.test ungapped.test.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o coding2coding.test coding2coding.test.o coding2coding.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 -gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o frameshift.test frameshift.test.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 bootstrapper.c: In function 'Argument_main': bootstrapper.c:421:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] 421 | if((!models) || (!g_strcasecmp(models, "all"))) @@ -1536,6 +1569,9 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o ungapped.test ungapped.test.o ungapped.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o coding2coding.test coding2coding.test.o coding2coding.o affine.o ungapped.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 +gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o frameshift.test frameshift.test.o frameshift.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o est2genome.test est2genome.test.o est2genome.o affine.o ungapped.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o intron.test intron.test.o intron.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o protein2genome.test protein2genome.test.o protein2genome.o protein2dna.o ungapped.o intron.o affine.o frameshift.o phase.o ../../src/struct/slist.o ../../src/struct/rangetree.o ../../src/struct/recyclebin.o ../../src/c4/optimal.o ../../src/c4/viterbi.o ../../src/c4/layout.o ../../src/c4/codegen.o ../../src/c4/cgutil.o ../../src/c4/alignment.o ../../src/c4/region.o ../../src/c4/c4.o ../../src/c4/subopt.o ../../src/comparison/match.o ../../src/sequence/codonsubmat.o ../../src/sequence/submat.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/general/argument.o ../../src/general/lineparse.o ../../src/general/threadref.o -lm -lglib-2.0 @@ -1648,1432 +1684,1432 @@ Making all in program make[3]: Entering directory '/build/reproducible-path/exonerate-2.4.0/src/program' ../../src/model/bootstrapper --compiled no -** Message: 01:28:22.610: Starting building bootstrapping components -** Message: 01:28:22.611: Processing model [u] -** Message: 01:28:22.612: Bootstrapper processing model [ungapped:dna2dna] -** Message: 01:28:22.612: Process optimal [optimal:ungapped:dna2dna] +** Message: 10:10:16.601: Starting building bootstrapping components +** Message: 10:10:16.601: Processing model [u] +** Message: 10:10:16.602: Bootstrapper processing model [ungapped:dna2dna] +** Message: 10:10:16.602: Process optimal [optimal:ungapped:dna2dna] -** (process:4058118): WARNING **: 01:28:22.612: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen] +** (process:1698451): WARNING **: 10:10:16.602: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen] -** (process:4058118): WARNING **: 01:28:22.612: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen] +** (process:1698451): WARNING **: 10:10:16.602: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen] -** (process:4058118): WARNING **: 01:28:22.612: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu] +** (process:1698451): WARNING **: 10:10:16.602: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu] -** (process:4058118): WARNING **: 01:28:22.612: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu] -** Message: 01:28:22.613: Compiling codegen: +** (process:1698451): WARNING **: 10:10:16.602: Creating codegen directory [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu] +** Message: 10:10:16.602: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.c -** Message: 01:28:22.835: Compiling codegen: +** Message: 10:10:16.923: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.c -** Message: 01:28:23.096: Compiling codegen: +** Message: 10:10:17.365: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.c -** Message: 01:28:23.355: Compiling codegen: +** Message: 10:10:17.921: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.c -** Message: 01:28:23.707: Compiling codegen: +** Message: 10:10:18.243: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.c -** Message: 01:28:24.067: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] -** Message: 01:28:24.067: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] to archive +** Message: 10:10:18.759: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] +** Message: 10:10:18.760: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o] to archive ar -cSq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_score.o -** Message: 01:28:24.071: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_score] -** Message: 01:28:24.071: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] -** Message: 01:28:24.071: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] to archive +** Message: 10:10:18.774: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_score] +** Message: 10:10:18.774: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] +** Message: 10:10:18.774: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path.o -** Message: 01:28:24.075: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path] -** Message: 01:28:24.075: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] -** Message: 01:28:24.075: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] to archive +** Message: 10:10:18.776: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path] +** Message: 10:10:18.776: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] +** Message: 10:10:18.776: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_region.o -** Message: 01:28:24.079: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_region] -** Message: 01:28:24.079: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] -** Message: 01:28:24.079: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] to archive +** Message: 10:10:18.790: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_region] +** Message: 10:10:18.790: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] +** Message: 10:10:18.790: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint.o -** Message: 01:28:24.084: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint] -** Message: 01:28:24.084: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] -** Message: 01:28:24.084: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:18.798: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_checkpoint] +** Message: 10:10:18.798: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] +** Message: 10:10:18.798: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation.o -** Message: 01:28:24.089: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation] -** Message: 01:28:24.089: Bootstrapper processing model [ungapped:protein2protein] -** Message: 01:28:24.089: Process optimal [optimal:ungapped:protein2protein] -** Message: 01:28:24.089: Compiling codegen: +** Message: 10:10:18.811: Adding function [optimal_58_ungapped_58_dna2dna_32_find_32_path_32_continuation] +** Message: 10:10:18.811: Bootstrapper processing model [ungapped:protein2protein] +** Message: 10:10:18.811: Process optimal [optimal:ungapped:protein2protein] +** Message: 10:10:18.811: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.c -** Message: 01:28:24.305: Compiling codegen: +** Message: 10:10:19.001: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.c -** Message: 01:28:24.539: Compiling codegen: +** Message: 10:10:19.212: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.c -** Message: 01:28:24.781: Compiling codegen: +** Message: 10:10:19.516: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.c -** Message: 01:28:25.109: Compiling codegen: +** Message: 10:10:20.052: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.c -** Message: 01:28:25.464: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] -** Message: 01:28:25.464: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] to archive +** Message: 10:10:20.673: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] +** Message: 10:10:20.673: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_score.o -** Message: 01:28:25.469: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_score] -** Message: 01:28:25.469: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] -** Message: 01:28:25.469: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] to archive +** Message: 10:10:20.676: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_score] +** Message: 10:10:20.676: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] +** Message: 10:10:20.676: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path.o -** Message: 01:28:25.474: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path] -** Message: 01:28:25.474: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] -** Message: 01:28:25.474: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] to archive +** Message: 10:10:20.693: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path] +** Message: 10:10:20.693: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] +** Message: 10:10:20.693: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_region.o -** Message: 01:28:25.479: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_region] -** Message: 01:28:25.479: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] -** Message: 01:28:25.479: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] to archive +** Message: 10:10:20.699: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_region] +** Message: 10:10:20.699: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] +** Message: 10:10:20.699: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint.o -** Message: 01:28:25.483: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint] -** Message: 01:28:25.483: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] -** Message: 01:28:25.483: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:20.704: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_checkpoint] +** Message: 10:10:20.704: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] +** Message: 10:10:20.704: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation.o -** Message: 01:28:25.488: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation] -** Message: 01:28:25.488: Bootstrapper processing model [ungapped:dna2protein] -** Message: 01:28:25.488: Process optimal [optimal:ungapped:dna2protein] -** Message: 01:28:25.489: Compiling codegen: +** Message: 10:10:20.717: Adding function [optimal_58_ungapped_58_protein2protein_32_find_32_path_32_continuation] +** Message: 10:10:20.717: Bootstrapper processing model [ungapped:dna2protein] +** Message: 10:10:20.717: Process optimal [optimal:ungapped:dna2protein] +** Message: 10:10:20.718: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.c -** Message: 01:28:25.743: Compiling codegen: +** Message: 10:10:20.928: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.c -** Message: 01:28:26.064: Compiling codegen: +** Message: 10:10:21.332: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.c -** Message: 01:28:26.435: Compiling codegen: +** Message: 10:10:22.144: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.c -** Message: 01:28:26.844: Compiling codegen: +** Message: 10:10:22.755: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.c -** Message: 01:28:27.289: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] -** Message: 01:28:27.289: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] to archive +** Message: 10:10:23.232: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] +** Message: 10:10:23.232: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_score.o -** Message: 01:28:27.293: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_score] -** Message: 01:28:27.293: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] -** Message: 01:28:27.293: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] to archive +** Message: 10:10:23.242: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_score] +** Message: 10:10:23.242: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] +** Message: 10:10:23.242: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path.o -** Message: 01:28:27.307: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path] -** Message: 01:28:27.307: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] -** Message: 01:28:27.307: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] to archive +** Message: 10:10:23.255: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path] +** Message: 10:10:23.255: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] +** Message: 10:10:23.255: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_region.o -** Message: 01:28:27.311: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_region] -** Message: 01:28:27.311: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] -** Message: 01:28:27.311: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] to archive +** Message: 10:10:23.265: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_region] +** Message: 10:10:23.265: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] +** Message: 10:10:23.265: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint.o -** Message: 01:28:27.317: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint] -** Message: 01:28:27.317: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] -** Message: 01:28:27.317: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:23.282: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_checkpoint] +** Message: 10:10:23.282: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] +** Message: 10:10:23.282: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation.o -** Message: 01:28:27.323: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation] -** Message: 01:28:27.323: Bootstrapper processing model [ungapped:protein2dna] -** Message: 01:28:27.323: Process optimal [optimal:ungapped:protein2dna] -** Message: 01:28:27.324: Compiling codegen: +** Message: 10:10:23.295: Adding function [optimal_58_ungapped_58_dna2protein_32_find_32_path_32_continuation] +** Message: 10:10:23.295: Bootstrapper processing model [ungapped:protein2dna] +** Message: 10:10:23.295: Process optimal [optimal:ungapped:protein2dna] +** Message: 10:10:23.295: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.c -** Message: 01:28:27.584: Compiling codegen: +** Message: 10:10:23.590: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.c -** Message: 01:28:27.877: Compiling codegen: +** Message: 10:10:23.976: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.c -** Message: 01:28:28.219: Compiling codegen: +** Message: 10:10:24.288: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.c -** Message: 01:28:28.673: Compiling codegen: +** Message: 10:10:24.780: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.c -** Message: 01:28:29.091: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] -** Message: 01:28:29.092: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] to archive +** Message: 10:10:25.279: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] +** Message: 10:10:25.279: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_score.o -** Message: 01:28:29.098: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_score] -** Message: 01:28:29.098: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] -** Message: 01:28:29.098: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] to archive +** Message: 10:10:25.283: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_score] +** Message: 10:10:25.283: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] +** Message: 10:10:25.284: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path.o -** Message: 01:28:29.102: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path] -** Message: 01:28:29.102: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] -** Message: 01:28:29.102: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] to archive +** Message: 10:10:25.291: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path] +** Message: 10:10:25.291: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] +** Message: 10:10:25.291: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_region.o -** Message: 01:28:29.116: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_region] -** Message: 01:28:29.116: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] -** Message: 01:28:29.116: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] to archive +** Message: 10:10:25.314: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_region] +** Message: 10:10:25.314: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] +** Message: 10:10:25.314: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint.o -** Message: 01:28:29.122: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint] -** Message: 01:28:29.123: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] -** Message: 01:28:29.123: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:25.327: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_checkpoint] +** Message: 10:10:25.327: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] +** Message: 10:10:25.328: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation.o -** Message: 01:28:29.129: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation] -** Message: 01:28:29.129: Processing model [u:t] -** Message: 01:28:29.130: Bootstrapper processing model [ungapped:codon] -** Message: 01:28:29.130: Process optimal [optimal:ungapped:codon] -** Message: 01:28:29.130: Compiling codegen: +** Message: 10:10:25.343: Adding function [optimal_58_ungapped_58_protein2dna_32_find_32_path_32_continuation] +** Message: 10:10:25.344: Processing model [u:t] +** Message: 10:10:25.344: Bootstrapper processing model [ungapped:codon] +** Message: 10:10:25.344: Process optimal [optimal:ungapped:codon] +** Message: 10:10:25.344: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.c -** Message: 01:28:29.468: Compiling codegen: +** Message: 10:10:25.928: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.c -** Message: 01:28:29.898: Compiling codegen: +** Message: 10:10:26.465: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.c -** Message: 01:28:30.437: Compiling codegen: +** Message: 10:10:27.374: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.c -** Message: 01:28:31.085: Compiling codegen: +** Message: 10:10:28.049: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.c -** Message: 01:28:31.710: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] -** Message: 01:28:31.710: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] to archive +** Message: 10:10:29.285: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] +** Message: 10:10:29.285: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_score.o -** Message: 01:28:31.717: Adding function [optimal_58_ungapped_58_codon_32_find_32_score] -** Message: 01:28:31.717: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] -** Message: 01:28:31.717: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] to archive +** Message: 10:10:29.306: Adding function [optimal_58_ungapped_58_codon_32_find_32_score] +** Message: 10:10:29.306: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] +** Message: 10:10:29.306: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path.o -** Message: 01:28:31.731: Adding function [optimal_58_ungapped_58_codon_32_find_32_path] -** Message: 01:28:31.731: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] -** Message: 01:28:31.731: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] to archive +** Message: 10:10:29.322: Adding function [optimal_58_ungapped_58_codon_32_find_32_path] +** Message: 10:10:29.322: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] +** Message: 10:10:29.322: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_region.o -** Message: 01:28:31.738: Adding function [optimal_58_ungapped_58_codon_32_find_32_region] -** Message: 01:28:31.738: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] -** Message: 01:28:31.738: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] to archive +** Message: 10:10:29.340: Adding function [optimal_58_ungapped_58_codon_32_find_32_region] +** Message: 10:10:29.340: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] +** Message: 10:10:29.340: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_checkpoint.o -** Message: 01:28:31.743: Adding function [optimal_58_ungapped_58_codon_32_find_32_checkpoint] -** Message: 01:28:31.743: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] -** Message: 01:28:31.743: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:29.362: Adding function [optimal_58_ungapped_58_codon_32_find_32_checkpoint] +** Message: 10:10:29.362: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] +** Message: 10:10:29.362: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_ungapped_58_codon_32_find_32_path_32_continuation.o -** Message: 01:28:31.750: Adding function [optimal_58_ungapped_58_codon_32_find_32_path_32_continuation] -** Message: 01:28:31.750: Processing model [a:g] -** Message: 01:28:31.751: Bootstrapper processing model [affine:global:dna2dna] -** Message: 01:28:31.751: Process optimal [optimal:affine:global:dna2dna] -** Message: 01:28:31.752: Compiling codegen: +** Message: 10:10:29.383: Adding function [optimal_58_ungapped_58_codon_32_find_32_path_32_continuation] +** Message: 10:10:29.383: Processing model [a:g] +** Message: 10:10:29.384: Bootstrapper processing model [affine:global:dna2dna] +** Message: 10:10:29.384: Process optimal [optimal:affine:global:dna2dna] +** Message: 10:10:29.384: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.c -** Message: 01:28:32.267: Compiling codegen: +** Message: 10:10:30.088: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.c -** Message: 01:28:32.974: Compiling codegen: +** Message: 10:10:31.186: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.c -** Message: 01:28:33.604: Compiling codegen: +** Message: 10:10:32.016: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.c -** Message: 01:28:34.376: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] -** Message: 01:28:34.376: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] to archive +** Message: 10:10:32.859: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] +** Message: 10:10:32.860: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_score.o -** Message: 01:28:34.381: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_score] -** Message: 01:28:34.381: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] -** Message: 01:28:34.381: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] to archive +** Message: 10:10:32.864: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_score] +** Message: 10:10:32.864: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] +** Message: 10:10:32.864: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path.o -** Message: 01:28:34.389: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path] -** Message: 01:28:34.389: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] -** Message: 01:28:34.389: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] to archive +** Message: 10:10:32.869: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path] +** Message: 10:10:32.869: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] +** Message: 10:10:32.869: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint.o -** Message: 01:28:34.397: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint] -** Message: 01:28:34.398: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] -** Message: 01:28:34.398: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:32.874: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_checkpoint] +** Message: 10:10:32.874: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] +** Message: 10:10:32.874: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation.o -** Message: 01:28:34.406: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation] -** Message: 01:28:34.406: Bootstrapper processing model [affine:global:protein2protein] -** Message: 01:28:34.406: Process optimal [optimal:affine:global:protein2protein] -** Message: 01:28:34.407: Compiling codegen: +** Message: 10:10:32.879: Adding function [optimal_58_affine_58_global_58_dna2dna_32_find_32_path_32_continuation] +** Message: 10:10:32.879: Bootstrapper processing model [affine:global:protein2protein] +** Message: 10:10:32.879: Process optimal [optimal:affine:global:protein2protein] +** Message: 10:10:32.880: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.c -** Message: 01:28:34.927: Compiling codegen: +** Message: 10:10:33.544: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.c -** Message: 01:28:35.636: Compiling codegen: +** Message: 10:10:34.808: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.c -** Message: 01:28:36.259: Compiling codegen: +** Message: 10:10:35.603: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.c -** Message: 01:28:36.982: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] -** Message: 01:28:36.982: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] to archive +** Message: 10:10:36.365: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] +** Message: 10:10:36.365: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_score.o -** Message: 01:28:36.991: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_score] -** Message: 01:28:36.991: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] -** Message: 01:28:36.991: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] to archive +** Message: 10:10:36.383: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_score] +** Message: 10:10:36.383: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] +** Message: 10:10:36.384: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path.o -** Message: 01:28:36.997: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path] -** Message: 01:28:36.997: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] -** Message: 01:28:36.997: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] to archive +** Message: 10:10:36.400: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path] +** Message: 10:10:36.400: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] +** Message: 10:10:36.400: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint.o -** Message: 01:28:37.006: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint] -** Message: 01:28:37.006: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] -** Message: 01:28:37.006: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:36.423: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_checkpoint] +** Message: 10:10:36.423: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] +** Message: 10:10:36.424: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation.o -** Message: 01:28:37.015: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation] -** Message: 01:28:37.015: Processing model [a:b] -** Message: 01:28:37.016: Bootstrapper processing model [affine:bestfit:dna2dna] -** Message: 01:28:37.016: Process optimal [optimal:affine:bestfit:dna2dna] -** Message: 01:28:37.017: Compiling codegen: +** Message: 10:10:36.451: Adding function [optimal_58_affine_58_global_58_protein2protein_32_find_32_path_32_continuation] +** Message: 10:10:36.451: Processing model [a:b] +** Message: 10:10:36.452: Bootstrapper processing model [affine:bestfit:dna2dna] +** Message: 10:10:36.452: Process optimal [optimal:affine:bestfit:dna2dna] +** Message: 10:10:36.452: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.c -** Message: 01:28:37.731: Compiling codegen: +** Message: 10:10:37.392: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.c -** Message: 01:28:38.683: Compiling codegen: +** Message: 10:10:38.388: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.c -** Message: 01:28:39.607: Compiling codegen: +** Message: 10:10:39.368: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.c -** Message: 01:28:40.262: Compiling codegen: +** Message: 10:10:40.041: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.c -** Message: 01:28:41.021: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] -** Message: 01:28:41.022: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] to archive +** Message: 10:10:41.068: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] +** Message: 10:10:41.069: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score.o -** Message: 01:28:41.031: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score] -** Message: 01:28:41.031: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] -** Message: 01:28:41.031: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] to archive +** Message: 10:10:41.074: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_score] +** Message: 10:10:41.074: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] +** Message: 10:10:41.074: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path.o -** Message: 01:28:41.038: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path] -** Message: 01:28:41.038: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] -** Message: 01:28:41.038: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] to archive +** Message: 10:10:41.079: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path] +** Message: 10:10:41.079: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] +** Message: 10:10:41.079: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region.o -** Message: 01:28:41.048: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region] -** Message: 01:28:41.048: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] -** Message: 01:28:41.048: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] to archive +** Message: 10:10:41.084: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_region] +** Message: 10:10:41.084: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] +** Message: 10:10:41.084: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint.o -** Message: 01:28:41.058: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint] -** Message: 01:28:41.058: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] -** Message: 01:28:41.058: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:41.089: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_checkpoint] +** Message: 10:10:41.090: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] +** Message: 10:10:41.090: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation.o -** Message: 01:28:41.068: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation] -** Message: 01:28:41.068: Bootstrapper processing model [affine:bestfit:protein2protein] -** Message: 01:28:41.068: Process optimal [optimal:affine:bestfit:protein2protein] -** Message: 01:28:41.070: Compiling codegen: +** Message: 10:10:41.099: Adding function [optimal_58_affine_58_bestfit_58_dna2dna_32_find_32_path_32_continuation] +** Message: 10:10:41.100: Bootstrapper processing model [affine:bestfit:protein2protein] +** Message: 10:10:41.100: Process optimal [optimal:affine:bestfit:protein2protein] +** Message: 10:10:41.100: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.c -** Message: 01:28:41.778: Compiling codegen: +** Message: 10:10:41.864: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.c -** Message: 01:28:42.768: Compiling codegen: +** Message: 10:10:43.719: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.c -** Message: 01:28:43.676: Compiling codegen: +** Message: 10:10:45.204: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.c -** Message: 01:28:44.292: Compiling codegen: +** Message: 10:10:45.778: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.c -** Message: 01:28:45.081: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] -** Message: 01:28:45.081: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] to archive +** Message: 10:10:46.631: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] +** Message: 10:10:46.631: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score.o -** Message: 01:28:45.088: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score] -** Message: 01:28:45.088: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] -** Message: 01:28:45.088: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] to archive +** Message: 10:10:46.639: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_score] +** Message: 10:10:46.639: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] +** Message: 10:10:46.639: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path.o -** Message: 01:28:45.099: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path] -** Message: 01:28:45.099: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] -** Message: 01:28:45.099: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] to archive +** Message: 10:10:46.647: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path] +** Message: 10:10:46.647: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] +** Message: 10:10:46.647: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region.o -** Message: 01:28:45.110: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region] -** Message: 01:28:45.110: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] -** Message: 01:28:45.110: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] to archive +** Message: 10:10:46.659: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_region] +** Message: 10:10:46.659: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] +** Message: 10:10:46.659: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint.o -** Message: 01:28:45.121: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint] -** Message: 01:28:45.121: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] -** Message: 01:28:45.121: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:46.681: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_checkpoint] +** Message: 10:10:46.681: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] +** Message: 10:10:46.681: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation.o -** Message: 01:28:45.133: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation] -** Message: 01:28:45.133: Processing model [a:l] -** Message: 01:28:45.133: Bootstrapper processing model [affine:local:dna2dna] -** Message: 01:28:45.133: Process optimal [optimal:affine:local:dna2dna] -** Message: 01:28:45.134: Compiling codegen: +** Message: 10:10:46.689: Adding function [optimal_58_affine_58_bestfit_58_protein2protein_32_find_32_path_32_continuation] +** Message: 10:10:46.690: Processing model [a:l] +** Message: 10:10:46.690: Bootstrapper processing model [affine:local:dna2dna] +** Message: 10:10:46.690: Process optimal [optimal:affine:local:dna2dna] +** Message: 10:10:46.690: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.c -** Message: 01:28:45.460: Compiling codegen: +** Message: 10:10:46.956: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.c -** Message: 01:28:45.859: Compiling codegen: +** Message: 10:10:47.321: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.c -** Message: 01:28:46.261: Compiling codegen: +** Message: 10:10:47.748: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c -** Message: 01:28:46.902: Compiling codegen: +** Message: 10:10:48.516: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c -** Message: 01:28:47.692: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] -** Message: 01:28:47.692: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive +** Message: 10:10:49.611: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] +** Message: 10:10:49.612: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_score.o -** Message: 01:28:47.703: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_score] -** Message: 01:28:47.704: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] -** Message: 01:28:47.704: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive +** Message: 10:10:49.639: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_score] +** Message: 10:10:49.639: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] +** Message: 10:10:49.639: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path.o -** Message: 01:28:47.715: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path] -** Message: 01:28:47.715: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] -** Message: 01:28:47.715: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive +** Message: 10:10:49.657: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path] +** Message: 10:10:49.657: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] +** Message: 10:10:49.658: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_region.o -** Message: 01:28:47.727: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_region] -** Message: 01:28:47.727: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] -** Message: 01:28:47.727: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive +** Message: 10:10:49.694: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_region] +** Message: 10:10:49.694: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] +** Message: 10:10:49.694: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -** Message: 01:28:47.739: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] -** Message: 01:28:47.739: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] -** Message: 01:28:47.739: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:10:49.708: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] +** Message: 10:10:49.708: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] +** Message: 10:10:49.708: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -** Message: 01:28:47.751: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] -** Message: 01:28:47.755: Process optimal [Terminal [Segment("START"->"match"):[affine:local:dna2dna]]] -** Message: 01:28:47.756: Compiling codegen: +** Message: 10:10:49.733: Adding function [optimal_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] +** Message: 10:10:49.734: Process optimal [Terminal [Segment("START"->"match"):[affine:local:dna2dna]]] +** Message: 10:10:49.740: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:28:48.317: Compiling codegen: +** Message: 10:10:50.412: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:28:49.144: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:28:49.144: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:10:51.792: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:10:51.792: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:28:49.156: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:28:49.156: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:28:49.156: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:10:51.803: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:10:51.803: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:10:51.804: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:28:49.169: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:28:49.169: Process optimal [Terminal [Segment("match"->"END"):[affine:local:dna2dna]]] -** Message: 01:28:49.170: Compiling codegen: +** Message: 10:10:51.822: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:10:51.822: Process optimal [Terminal [Segment("match"->"END"):[affine:local:dna2dna]]] +** Message: 10:10:51.822: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:28:49.661: Compiling codegen: +** Message: 10:10:52.428: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:28:50.318: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:28:50.318: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:10:53.283: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:10:53.283: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:28:50.330: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:28:50.330: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:28:50.330: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:10:53.307: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:10:53.308: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:10:53.308: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:28:50.338: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:28:50.338: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:dna2dna]]] -** Message: 01:28:50.340: Compiling codegen: +** Message: 10:10:53.327: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:10:53.327: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:dna2dna]]] +** Message: 10:10:53.328: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:28:51.656: Compiling codegen: +** Message: 10:10:55.116: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:28:53.443: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:28:53.443: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:10:57.196: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:10:57.196: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:28:53.456: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:28:53.456: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:28:53.456: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:10:57.214: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:10:57.214: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:10:57.214: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:28:53.469: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:28:53.470: Compiling codegen: +** Message: 10:10:57.221: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:10:57.222: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.c -** Message: 01:28:53.734: Compiling codegen: +** Message: 10:10:57.659: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.c -** Message: 01:28:53.947: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] -** Message: 01:28:53.947: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] to archive +** Message: 10:10:58.121: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] +** Message: 10:10:58.121: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded.o -** Message: 01:28:53.960: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded] -** Message: 01:28:53.960: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] -** Message: 01:28:53.960: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] to archive +** Message: 10:10:58.142: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_reverse_58_traceback_58_seeded] +** Message: 10:10:58.142: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] +** Message: 10:10:58.142: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded.o -** Message: 01:28:53.969: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded] -** Message: 01:28:53.969: Bootstrapper processing model [affine:local:protein2protein] -** Message: 01:28:53.969: Process optimal [optimal:affine:local:protein2protein] -** Message: 01:28:53.969: Compiling codegen: +** Message: 10:10:58.153: Adding function [Scheduler_Cell_process_affine_58_local_58_dna2dna_58_forward_58_traceback_58_seeded] +** Message: 10:10:58.153: Bootstrapper processing model [affine:local:protein2protein] +** Message: 10:10:58.153: Process optimal [optimal:affine:local:protein2protein] +** Message: 10:10:58.153: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.c -** Message: 01:28:54.286: Compiling codegen: +** Message: 10:10:58.508: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.c -** Message: 01:28:54.627: Compiling codegen: +** Message: 10:10:59.340: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.c -** Message: 01:28:55.023: Compiling codegen: +** Message: 10:10:59.904: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c -** Message: 01:28:55.628: Compiling codegen: +** Message: 10:11:01.071: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c -** Message: 01:28:56.332: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] -** Message: 01:28:56.333: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive +** Message: 10:11:01.916: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] +** Message: 10:11:01.916: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_score.o -** Message: 01:28:56.346: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_score] -** Message: 01:28:56.346: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] -** Message: 01:28:56.346: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive +** Message: 10:11:01.935: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_score] +** Message: 10:11:01.935: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] +** Message: 10:11:01.935: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path.o -** Message: 01:28:56.356: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path] -** Message: 01:28:56.356: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] -** Message: 01:28:56.356: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive +** Message: 10:11:01.957: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path] +** Message: 10:11:01.957: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] +** Message: 10:11:01.957: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_region.o -** Message: 01:28:56.370: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_region] -** Message: 01:28:56.370: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] -** Message: 01:28:56.370: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive +** Message: 10:11:01.979: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_region] +** Message: 10:11:01.979: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] +** Message: 10:11:01.979: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -** Message: 01:28:56.385: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] -** Message: 01:28:56.385: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] -** Message: 01:28:56.385: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive +** Message: 10:11:01.993: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] +** Message: 10:11:01.993: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] +** Message: 10:11:01.993: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -** Message: 01:28:56.399: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] -** Message: 01:28:56.402: Process optimal [Terminal [Segment("START"->"match"):[affine:local:protein2protein]]] -** Message: 01:28:56.404: Compiling codegen: +** Message: 10:11:02.014: Adding function [optimal_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] +** Message: 10:11:02.019: Process optimal [Terminal [Segment("START"->"match"):[affine:local:protein2protein]]] +** Message: 10:11:02.020: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:28:56.966: Compiling codegen: +** Message: 10:11:04.828: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:28:57.713: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:28:57.713: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:11:06.974: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:11:06.974: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:28:57.728: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:28:57.728: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:28:57.728: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:11:06.982: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:11:06.982: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:11:06.982: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:28:57.738: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:28:57.738: Process optimal [Terminal [Segment("match"->"END"):[affine:local:protein2protein]]] -** Message: 01:28:57.739: Compiling codegen: +** Message: 10:11:07.003: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:11:07.003: Process optimal [Terminal [Segment("match"->"END"):[affine:local:protein2protein]]] +** Message: 10:11:07.004: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:28:58.225: Compiling codegen: +** Message: 10:11:07.904: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:28:58.886: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:28:58.886: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:11:08.675: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:11:08.676: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:28:58.901: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:28:58.901: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:28:58.901: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:11:08.703: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:11:08.703: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:11:08.704: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:28:58.911: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:28:58.911: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:protein2protein]]] -** Message: 01:28:58.913: Compiling codegen: +** Message: 10:11:08.726: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:11:08.726: Process optimal [HeuristicJoin:[Segment("match"->"match"):[affine:local:protein2protein]]] +** Message: 10:11:08.727: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:29:00.123: Compiling codegen: +** Message: 10:11:10.375: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:29:01.896: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:29:01.896: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:11:12.647: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:11:12.647: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:29:01.911: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:29:01.911: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:29:01.911: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:11:12.661: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:11:12.661: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:11:12.661: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:29:01.927: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:29:01.927: Compiling codegen: +** Message: 10:11:12.671: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:11:12.671: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.c -** Message: 01:29:02.190: Compiling codegen: +** Message: 10:11:12.916: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.c -** Message: 01:29:02.465: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] -** Message: 01:29:02.465: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] to archive +** Message: 10:11:13.318: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] +** Message: 10:11:13.319: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded.o -** Message: 01:29:02.481: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded] -** Message: 01:29:02.481: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] -** Message: 01:29:02.481: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] to archive +** Message: 10:11:13.326: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_reverse_58_traceback_58_seeded] +** Message: 10:11:13.327: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] +** Message: 10:11:13.327: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded.o -** Message: 01:29:02.497: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded] -** Message: 01:29:02.497: Processing model [a:o] -** Message: 01:29:02.497: Bootstrapper processing model [affine:overlap:dna2dna] -** Message: 01:29:02.497: Process optimal [optimal:affine:overlap:dna2dna] -** Message: 01:29:02.498: Compiling codegen: +** Message: 10:11:13.335: Adding function [Scheduler_Cell_process_affine_58_local_58_protein2protein_58_forward_58_traceback_58_seeded] +** Message: 10:11:13.335: Processing model [a:o] +** Message: 10:11:13.337: Bootstrapper processing model [affine:overlap:dna2dna] +** Message: 10:11:13.337: Process optimal [optimal:affine:overlap:dna2dna] +** Message: 10:11:13.337: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.c -** Message: 01:29:03.145: Compiling codegen: +** Message: 10:11:13.952: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.c -** Message: 01:29:04.010: Compiling codegen: +** Message: 10:11:15.256: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.c -** Message: 01:29:04.915: Compiling codegen: +** Message: 10:11:16.324: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.c -** Message: 01:29:05.540: Compiling codegen: +** Message: 10:11:17.033: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.c -** Message: 01:29:06.264: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] -** Message: 01:29:06.264: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] to archive +** Message: 10:11:17.802: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] +** Message: 10:11:17.802: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score.o -** Message: 01:29:06.281: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score] -** Message: 01:29:06.281: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] -** Message: 01:29:06.281: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] to archive +** Message: 10:11:17.815: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_score] +** Message: 10:11:17.815: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] +** Message: 10:11:17.816: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path.o -** Message: 01:29:06.297: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path] -** Message: 01:29:06.297: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] -** Message: 01:29:06.297: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] to archive +** Message: 10:11:17.827: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path] +** Message: 10:11:17.827: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] +** Message: 10:11:17.828: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region.o -** Message: 01:29:06.313: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region] -** Message: 01:29:06.313: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] -** Message: 01:29:06.313: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] to archive +** Message: 10:11:17.839: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_region] +** Message: 10:11:17.839: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] +** Message: 10:11:17.840: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint.o -** Message: 01:29:06.330: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint] -** Message: 01:29:06.330: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] -** Message: 01:29:06.330: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:11:17.875: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_checkpoint] +** Message: 10:11:17.875: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] +** Message: 10:11:17.876: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation.o -** Message: 01:29:06.347: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation] -** Message: 01:29:06.347: Processing model [e2g] -** Message: 01:29:06.348: Bootstrapper processing model [est2genome] -** Message: 01:29:06.348: Process optimal [optimal:est2genome] -** Message: 01:29:06.349: Compiling codegen: +** Message: 10:11:17.907: Adding function [optimal_58_affine_58_overlap_58_dna2dna_32_find_32_path_32_continuation] +** Message: 10:11:17.907: Processing model [e2g] +** Message: 10:11:17.908: Bootstrapper processing model [est2genome] +** Message: 10:11:17.908: Process optimal [optimal:est2genome] +** Message: 10:11:17.909: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.c -** Message: 01:29:07.703: Compiling codegen: +** Message: 10:11:19.857: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.c -** Message: 01:29:09.731: Compiling codegen: +** Message: 10:11:22.869: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.c -** Message: 01:29:11.563: Compiling codegen: +** Message: 10:11:24.788: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.c -** Message: 01:29:15.613: Compiling codegen: +** Message: 10:11:28.686: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.c -** Message: 01:29:21.354: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] -** Message: 01:29:21.354: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] to archive +** Message: 10:11:34.974: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] +** Message: 10:11:34.974: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_score.o -** Message: 01:29:21.366: Adding function [optimal_58_est2genome_32_find_32_score] -** Message: 01:29:21.366: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] -** Message: 01:29:21.366: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] to archive +** Message: 10:11:34.987: Adding function [optimal_58_est2genome_32_find_32_score] +** Message: 10:11:34.987: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] +** Message: 10:11:34.987: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path.o -** Message: 01:29:21.384: Adding function [optimal_58_est2genome_32_find_32_path] -** Message: 01:29:21.384: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] -** Message: 01:29:21.384: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] to archive +** Message: 10:11:34.999: Adding function [optimal_58_est2genome_32_find_32_path] +** Message: 10:11:34.999: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] +** Message: 10:11:34.999: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_region.o -** Message: 01:29:21.400: Adding function [optimal_58_est2genome_32_find_32_region] -** Message: 01:29:21.400: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] -** Message: 01:29:21.400: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] to archive +** Message: 10:11:35.012: Adding function [optimal_58_est2genome_32_find_32_region] +** Message: 10:11:35.012: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] +** Message: 10:11:35.012: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_checkpoint.o -** Message: 01:29:21.419: Adding function [optimal_58_est2genome_32_find_32_checkpoint] -** Message: 01:29:21.419: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] -** Message: 01:29:21.419: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] to archive +** Message: 10:11:35.031: Adding function [optimal_58_est2genome_32_find_32_checkpoint] +** Message: 10:11:35.031: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] +** Message: 10:11:35.031: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_est2genome_32_find_32_path_32_continuation.o -** Message: 01:29:21.438: Adding function [optimal_58_est2genome_32_find_32_path_32_continuation] -** Message: 01:29:21.452: Process optimal [Terminal [Segment("START"->"match reverse"):[est2genome]]] -** Message: 01:29:21.455: Compiling codegen: +** Message: 10:11:35.051: Adding function [optimal_58_est2genome_32_find_32_path_32_continuation] +** Message: 10:11:35.064: Process optimal [Terminal [Segment("START"->"match reverse"):[est2genome]]] +** Message: 10:11:35.065: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:23.257: Compiling codegen: +** Message: 10:11:36.761: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:26.054: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:26.054: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:11:39.360: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:11:39.360: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:26.067: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:26.067: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:26.067: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:11:39.380: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:11:39.380: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:11:39.380: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:26.087: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:26.087: Process optimal [Terminal [Segment("match reverse"->"END"):[est2genome]]] -** Message: 01:29:26.089: Compiling codegen: +** Message: 10:11:39.401: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:11:39.401: Process optimal [Terminal [Segment("match reverse"->"END"):[est2genome]]] +** Message: 10:11:39.402: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:27.177: Compiling codegen: +** Message: 10:11:40.498: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:28.828: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:28.828: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:11:41.991: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:11:41.991: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:28.847: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:28.847: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:28.847: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:11:42.011: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:11:42.011: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:11:42.011: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:28.860: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:28.860: Process optimal [Terminal [Segment("START"->"match forward"):[est2genome]]] -** Message: 01:29:28.863: Compiling codegen: +** Message: 10:11:42.032: Adding function [Terminal_32__91_Segment_40__34_match_32_reverse_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:11:42.032: Process optimal [Terminal [Segment("START"->"match forward"):[est2genome]]] +** Message: 10:11:42.034: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:30.747: Compiling codegen: +** Message: 10:11:43.912: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:33.392: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:33.392: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:11:46.628: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:11:46.628: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:33.408: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:33.408: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:33.408: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:11:46.639: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:11:46.639: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:11:46.639: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:33.429: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:33.429: Process optimal [Terminal [Segment("match forward"->"END"):[est2genome]]] -** Message: 01:29:33.430: Compiling codegen: +** Message: 10:11:46.659: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:11:46.659: Process optimal [Terminal [Segment("match forward"->"END"):[est2genome]]] +** Message: 10:11:46.661: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:34.509: Compiling codegen: +** Message: 10:11:47.739: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:36.030: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:36.030: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:11:49.256: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:11:49.256: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:36.051: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:36.051: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:36.051: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:11:49.269: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:11:49.269: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:11:49.269: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:36.072: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:36.072: Process optimal [HeuristicJoin:[Segment("match reverse"->"match reverse"):[est2genome]]] -** Message: 01:29:36.076: Compiling codegen: +** Message: 10:11:49.290: Adding function [Terminal_32__91_Segment_40__34_match_32_forward_34__45__62__34_END_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:11:49.291: Process optimal [HeuristicJoin:[Segment("match reverse"->"match reverse"):[est2genome]]] +** Message: 10:11:49.294: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:39.562: Compiling codegen: +** Message: 10:11:52.893: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:44.991: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:44.991: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:11:58.535: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:11:58.535: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:45.012: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:45.012: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:45.012: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:11:58.559: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:11:58.559: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:11:58.559: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:45.034: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:45.034: Process optimal [Src span [Segment("match reverse"->"intron reverse"):[est2genome]]] -** Message: 01:29:45.036: Compiling codegen: +** Message: 10:11:58.576: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:11:58.577: Process optimal [Src span [Segment("match reverse"->"intron reverse"):[est2genome]]] +** Message: 10:11:58.577: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:46.236: Compiling codegen: +** Message: 10:11:59.672: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:47.956: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:47.956: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:12:01.443: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:12:01.443: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:47.974: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:47.974: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:47.974: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:01.483: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:12:01.483: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:01.483: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:47.998: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:47.998: Process optimal [Src span traceback [Segment("match reverse"->"intron reverse"):[est2genome]]] -** Message: 01:29:48.002: Compiling codegen: +** Message: 10:12:01.519: Adding function [Src_32_span_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:01.519: Process optimal [Src span traceback [Segment("match reverse"->"intron reverse"):[est2genome]]] +** Message: 10:12:01.521: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:52.909: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:52.909: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:06.655: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:06.655: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:52.932: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:52.932: Process optimal [Dst span [Segment("intron reverse"->"match reverse"):[est2genome]]] -** Message: 01:29:52.935: Compiling codegen: +** Message: 10:12:06.691: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_reverse_34__45__62__34_intron_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:06.691: Process optimal [Dst span [Segment("intron reverse"->"match reverse"):[est2genome]]] +** Message: 10:12:06.692: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:29:55.010: Compiling codegen: +** Message: 10:12:09.208: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:29:58.202: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:29:58.202: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:12:12.603: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:12:12.603: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:29:58.215: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:29:58.215: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:29:58.215: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:12.635: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:12:12.635: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:12.635: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:29:58.239: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:29:58.240: Process optimal [HeuristicJoin:[Segment("match forward"->"match forward"):[est2genome]]] -** Message: 01:29:58.243: Compiling codegen: +** Message: 10:12:12.667: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_reverse_34__45__62__34_match_32_reverse_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:12.667: Process optimal [HeuristicJoin:[Segment("match forward"->"match forward"):[est2genome]]] +** Message: 10:12:12.669: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:30:01.639: Compiling codegen: +** Message: 10:12:16.413: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:30:07.039: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:30:07.039: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:12:22.991: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:12:22.991: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:30:07.063: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:30:07.063: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:30:07.063: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:23.016: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:12:23.016: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:23.016: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:30:07.089: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:30:07.089: Process optimal [Src span [Segment("match forward"->"intron forward"):[est2genome]]] -** Message: 01:30:07.090: Compiling codegen: +** Message: 10:12:23.041: Adding function [HeuristicJoin_58__91_Segment_40__34_match_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:23.041: Process optimal [Src span [Segment("match forward"->"intron forward"):[est2genome]]] +** Message: 10:12:23.043: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:30:08.241: Compiling codegen: +** Message: 10:12:24.187: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:30:09.856: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:30:09.856: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:12:25.777: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:12:25.777: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:30:09.881: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:30:09.881: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:30:09.881: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:25.802: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:12:25.802: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:25.802: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:30:09.904: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:30:09.904: Process optimal [Src span traceback [Segment("match forward"->"intron forward"):[est2genome]]] -** Message: 01:30:09.907: Compiling codegen: +** Message: 10:12:25.829: Adding function [Src_32_span_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:25.829: Process optimal [Src span traceback [Segment("match forward"->"intron forward"):[est2genome]]] +** Message: 10:12:25.833: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:30:14.592: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:30:14.592: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:30.139: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:30.139: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:30:14.618: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:30:14.618: Process optimal [Dst span [Segment("intron forward"->"match forward"):[est2genome]]] -** Message: 01:30:14.621: Compiling codegen: +** Message: 10:12:30.166: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_32_forward_34__45__62__34_intron_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:30.166: Process optimal [Dst span [Segment("intron forward"->"match forward"):[est2genome]]] +** Message: 10:12:30.168: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.c -** Message: 01:30:16.656: Compiling codegen: +** Message: 10:12:32.086: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.c -** Message: 01:30:19.681: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] -** Message: 01:30:19.681: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive +** Message: 10:12:35.167: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] +** Message: 10:12:35.167: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score.o -** Message: 01:30:19.707: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] -** Message: 01:30:19.707: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] -** Message: 01:30:19.707: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive +** Message: 10:12:35.195: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_score] +** Message: 10:12:35.195: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] +** Message: 10:12:35.195: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path.o -** Message: 01:30:19.733: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] -** Message: 01:30:19.734: Compiling codegen: +** Message: 10:12:35.222: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_forward_34__45__62__34_match_32_forward_34__41__58__91_est2genome_93__93__32_find_32_path] +** Message: 10:12:35.224: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.c -** Message: 01:30:20.204: Compiling codegen: +** Message: 10:12:35.754: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.c -** Message: 01:30:20.755: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] -** Message: 01:30:20.755: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] to archive +** Message: 10:12:36.276: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] +** Message: 10:12:36.276: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary.o -** Message: 01:30:20.782: Adding function [Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary] -** Message: 01:30:20.782: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] -** Message: 01:30:20.782: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] to archive +** Message: 10:12:36.303: Adding function [Scheduler_Cell_process_est2genome_58_reverse_58_notraceback_58_boundary] +** Message: 10:12:36.303: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] +** Message: 10:12:36.303: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary.o -** Message: 01:30:20.809: Adding function [Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary] -** Message: 01:30:20.809: Processing model [ner] -** Message: 01:30:20.809: Bootstrapper processing model [NER:affine:local:dna2dna] -** Message: 01:30:20.809: Process optimal [optimal:NER:affine:local:dna2dna] -** Message: 01:30:20.810: Compiling codegen: +** Message: 10:12:36.333: Adding function [Scheduler_Cell_process_est2genome_58_forward_58_traceback_58_boundary] +** Message: 10:12:36.333: Processing model [ner] +** Message: 10:12:36.333: Bootstrapper processing model [NER:affine:local:dna2dna] +** Message: 10:12:36.333: Process optimal [optimal:NER:affine:local:dna2dna] +** Message: 10:12:36.334: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.c -** Message: 01:30:21.175: Compiling codegen: +** Message: 10:12:36.682: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.c -** Message: 01:30:21.620: Compiling codegen: +** Message: 10:12:37.154: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.c -** Message: 01:30:22.132: Compiling codegen: +** Message: 10:12:37.651: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.c -** Message: 01:30:22.972: Compiling codegen: +** Message: 10:12:38.425: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.c -** Message: 01:30:24.029: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] -** Message: 01:30:24.029: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive +** Message: 10:12:39.387: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] +** Message: 10:12:39.387: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score.o -** Message: 01:30:24.065: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score] -** Message: 01:30:24.065: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] -** Message: 01:30:24.065: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive +** Message: 10:12:39.401: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_score] +** Message: 10:12:39.401: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] +** Message: 10:12:39.401: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path.o -** Message: 01:30:24.093: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path] -** Message: 01:30:24.093: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] -** Message: 01:30:24.093: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive +** Message: 10:12:39.421: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path] +** Message: 10:12:39.421: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] +** Message: 10:12:39.421: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region.o -** Message: 01:30:24.121: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region] -** Message: 01:30:24.121: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] -** Message: 01:30:24.121: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive +** Message: 10:12:39.438: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_region] +** Message: 10:12:39.438: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] +** Message: 10:12:39.438: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint.o -** Message: 01:30:24.153: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] -** Message: 01:30:24.153: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] -** Message: 01:30:24.153: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive +** Message: 10:12:39.455: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_checkpoint] +** Message: 10:12:39.455: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] +** Message: 10:12:39.455: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation.o -** Message: 01:30:24.182: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] -** Message: 01:30:24.189: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:dna2dna]]] -** Message: 01:30:24.191: Compiling codegen: +** Message: 10:12:39.473: Adding function [optimal_58_NER_58_affine_58_local_58_dna2dna_32_find_32_path_32_continuation] +** Message: 10:12:39.475: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:dna2dna]]] +** Message: 10:12:39.476: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:30:24.992: Compiling codegen: +** Message: 10:12:40.183: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:30:26.188: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:30:26.188: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:12:41.184: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:12:41.184: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:30:26.209: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:30:26.209: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:30:26.209: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:12:41.213: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:12:41.213: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:12:41.213: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:30:26.230: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:30:26.230: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:dna2dna]]] -** Message: 01:30:26.230: Compiling codegen: +** Message: 10:12:41.234: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:12:41.234: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:dna2dna]]] +** Message: 10:12:41.235: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:30:26.850: Compiling codegen: +** Message: 10:12:42.180: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:30:27.770: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:30:27.770: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:12:43.072: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:12:43.072: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:30:27.798: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:30:27.798: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:30:27.798: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:12:43.091: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:12:43.091: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:12:43.091: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:30:27.828: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:30:27.828: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:dna2dna]]] -** Message: 01:30:27.830: Compiling codegen: +** Message: 10:12:43.127: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:12:43.127: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:dna2dna]]] +** Message: 10:12:43.128: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:30:29.770: Compiling codegen: +** Message: 10:12:45.748: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:30:32.605: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:30:32.605: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:12:50.176: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:12:50.176: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:30:32.635: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:30:32.635: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:30:32.635: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:12:50.213: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:12:50.213: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:12:50.213: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:30:32.666: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:30:32.666: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] -** Message: 01:30:32.668: Compiling codegen: +** Message: 10:12:50.245: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:12:50.245: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] +** Message: 10:12:50.246: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:30:33.428: Compiling codegen: +** Message: 10:12:51.652: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:30:34.423: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:30:34.423: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:12:53.104: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:12:53.104: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:30:34.453: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:30:34.453: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:30:34.453: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:12:53.118: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:12:53.118: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:12:53.119: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:30:34.480: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:30:34.480: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] -** Message: 01:30:34.483: Compiling codegen: +** Message: 10:12:53.135: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:12:53.135: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:dna2dna]]] +** Message: 10:12:53.136: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:30:37.103: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:30:37.103: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:12:56.724: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:12:56.724: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:30:37.134: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:30:37.134: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:dna2dna]]] -** Message: 01:30:37.135: Compiling codegen: +** Message: 10:12:56.762: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:12:56.762: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:dna2dna]]] +** Message: 10:12:56.763: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.c -** Message: 01:30:38.101: Compiling codegen: +** Message: 10:12:57.768: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.c -** Message: 01:30:39.569: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] -** Message: 01:30:39.569: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive +** Message: 10:12:59.485: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] +** Message: 10:12:59.485: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score.o -** Message: 01:30:39.601: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] -** Message: 01:30:39.601: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] -** Message: 01:30:39.601: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive +** Message: 10:12:59.500: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_score] +** Message: 10:12:59.500: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] +** Message: 10:12:59.500: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path.o -** Message: 01:30:39.629: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] -** Message: 01:30:39.629: Compiling codegen: +** Message: 10:12:59.514: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_dna2dna_93__93__32_find_32_path] +** Message: 10:12:59.515: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.c -** Message: 01:30:39.925: Compiling codegen: +** Message: 10:12:59.804: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.c -** Message: 01:30:40.275: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] -** Message: 01:30:40.275: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] to archive +** Message: 10:13:00.347: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] +** Message: 10:13:00.347: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary.o -** Message: 01:30:40.299: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary] -** Message: 01:30:40.299: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] -** Message: 01:30:40.299: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] to archive +** Message: 10:13:00.379: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_reverse_58_notraceback_58_boundary] +** Message: 10:13:00.379: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] +** Message: 10:13:00.380: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary.o -** Message: 01:30:40.324: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary] -** Message: 01:30:40.324: Bootstrapper processing model [NER:affine:local:protein2protein] -** Message: 01:30:40.324: Process optimal [optimal:NER:affine:local:protein2protein] -** Message: 01:30:40.324: Compiling codegen: +** Message: 10:13:00.419: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_dna2dna_58_forward_58_traceback_58_boundary] +** Message: 10:13:00.419: Bootstrapper processing model [NER:affine:local:protein2protein] +** Message: 10:13:00.420: Process optimal [optimal:NER:affine:local:protein2protein] +** Message: 10:13:00.420: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.c -** Message: 01:30:40.673: Compiling codegen: +** Message: 10:13:01.100: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.c -** Message: 01:30:41.145: Compiling codegen: +** Message: 10:13:01.904: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.c -** Message: 01:30:41.631: Compiling codegen: +** Message: 10:13:03.080: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.c -** Message: 01:30:42.460: Compiling codegen: +** Message: 10:13:04.380: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.c -** Message: 01:30:43.512: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] -** Message: 01:30:43.512: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive +** Message: 10:13:05.863: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] +** Message: 10:13:05.863: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score.o -** Message: 01:30:43.540: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score] -** Message: 01:30:43.540: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] -** Message: 01:30:43.540: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive +** Message: 10:13:05.894: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_score] +** Message: 10:13:05.894: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] +** Message: 10:13:05.894: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path.o -** Message: 01:30:43.573: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path] -** Message: 01:30:43.573: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] -** Message: 01:30:43.573: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive +** Message: 10:13:05.924: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path] +** Message: 10:13:05.924: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] +** Message: 10:13:05.924: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region.o -** Message: 01:30:43.607: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region] -** Message: 01:30:43.607: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] -** Message: 01:30:43.607: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive +** Message: 10:13:05.949: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_region] +** Message: 10:13:05.949: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] +** Message: 10:13:05.949: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint.o -** Message: 01:30:43.640: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] -** Message: 01:30:43.640: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] -** Message: 01:30:43.640: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive +** Message: 10:13:05.982: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_checkpoint] +** Message: 10:13:05.982: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] +** Message: 10:13:05.982: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation.o -** Message: 01:30:43.673: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] -** Message: 01:30:43.681: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:protein2protein]]] -** Message: 01:30:43.682: Compiling codegen: +** Message: 10:13:06.095: Adding function [optimal_58_NER_58_affine_58_local_58_protein2protein_32_find_32_path_32_continuation] +** Message: 10:13:06.098: Process optimal [Terminal [Segment("START"->"match"):[NER:affine:local:protein2protein]]] +** Message: 10:13:06.098: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:30:44.431: Compiling codegen: +** Message: 10:13:07.487: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:30:45.582: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:30:45.582: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:13:10.691: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:13:10.691: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:30:45.613: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:30:45.613: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:30:45.613: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:13:10.729: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:13:10.729: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:13:10.729: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:30:45.646: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:30:45.647: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:protein2protein]]] -** Message: 01:30:45.648: Compiling codegen: +** Message: 10:13:10.755: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:13:10.755: Process optimal [Terminal [Segment("match"->"END"):[NER:affine:local:protein2protein]]] +** Message: 10:13:10.756: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:30:46.289: Compiling codegen: +** Message: 10:13:13.024: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:30:47.163: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:30:47.163: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:13:14.242: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:13:14.242: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:30:47.198: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:30:47.198: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:30:47.198: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:13:14.291: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:13:14.292: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:13:14.292: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:30:47.232: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:30:47.232: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:protein2protein]]] -** Message: 01:30:47.235: Compiling codegen: +** Message: 10:13:14.331: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:13:14.331: Process optimal [HeuristicJoin:[Segment("match"->"match"):[NER:affine:local:protein2protein]]] +** Message: 10:13:14.332: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:30:49.071: Compiling codegen: +** Message: 10:13:18.095: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:30:51.778: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:30:51.778: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:13:22.059: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:13:22.060: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:30:51.800: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:30:51.800: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:30:51.800: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:13:22.099: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:13:22.099: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:13:22.099: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:30:51.835: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:30:51.835: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] -** Message: 01:30:51.836: Compiling codegen: +** Message: 10:13:22.160: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:13:22.161: Process optimal [Src span [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] +** Message: 10:13:22.161: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:30:52.553: Compiling codegen: +** Message: 10:13:23.577: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:30:53.542: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:30:53.542: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:13:26.203: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:13:26.203: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:30:53.576: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:30:53.576: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:30:53.576: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:13:26.244: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:13:26.244: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:13:26.244: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:30:53.611: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:30:53.611: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] -** Message: 01:30:53.615: Compiling codegen: +** Message: 10:13:26.283: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:13:26.283: Process optimal [Src span traceback [Segment("match"->"ner"):[NER:affine:local:protein2protein]]] +** Message: 10:13:26.284: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:30:56.156: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:30:56.156: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:13:30.533: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:13:30.533: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:30:56.190: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:30:56.190: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:protein2protein]]] -** Message: 01:30:56.194: Compiling codegen: +** Message: 10:13:30.554: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_ner_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:13:30.554: Process optimal [Dst span [Segment("ner"->"match"):[NER:affine:local:protein2protein]]] +** Message: 10:13:30.555: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.c -** Message: 01:30:57.079: Compiling codegen: +** Message: 10:13:31.494: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.c -** Message: 01:30:58.547: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] -** Message: 01:30:58.547: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive +** Message: 10:13:32.840: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] +** Message: 10:13:32.840: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score.o -** Message: 01:30:58.571: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] -** Message: 01:30:58.571: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] -** Message: 01:30:58.571: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive +** Message: 10:13:32.859: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_score] +** Message: 10:13:32.859: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] +** Message: 10:13:32.859: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path.o -** Message: 01:30:58.606: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] -** Message: 01:30:58.606: Compiling codegen: +** Message: 10:13:32.878: Adding function [Dst_32_span_32__91_Segment_40__34_ner_34__45__62__34_match_34__41__58__91_NER_58_affine_58_local_58_protein2protein_93__93__32_find_32_path] +** Message: 10:13:32.878: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.c -** Message: 01:30:58.905: Compiling codegen: +** Message: 10:13:33.136: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.c -** Message: 01:30:59.171: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] -** Message: 01:30:59.171: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] to archive +** Message: 10:13:33.394: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] +** Message: 10:13:33.395: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary.o -** Message: 01:30:59.206: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary] -** Message: 01:30:59.206: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] -** Message: 01:30:59.206: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] to archive +** Message: 10:13:33.420: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_reverse_58_notraceback_58_boundary] +** Message: 10:13:33.421: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] +** Message: 10:13:33.421: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary.o -** Message: 01:30:59.242: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary] -** Message: 01:30:59.242: Processing model [p2d] -** Message: 01:30:59.242: Bootstrapper processing model [protein2dna:local] -** Message: 01:30:59.243: Process optimal [optimal:protein2dna:local] -** Message: 01:30:59.244: Compiling codegen: +** Message: 10:13:33.440: Adding function [Scheduler_Cell_process_NER_58_affine_58_local_58_protein2protein_58_forward_58_traceback_58_boundary] +** Message: 10:13:33.440: Processing model [p2d] +** Message: 10:13:33.440: Bootstrapper processing model [protein2dna:local] +** Message: 10:13:33.440: Process optimal [optimal:protein2dna:local] +** Message: 10:13:33.441: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.c -** Message: 01:30:59.751: Compiling codegen: +** Message: 10:13:33.914: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.c -** Message: 01:31:00.534: Compiling codegen: +** Message: 10:13:34.571: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.c -** Message: 01:31:01.332: Compiling codegen: +** Message: 10:13:35.310: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.c -** Message: 01:31:02.910: Compiling codegen: +** Message: 10:13:36.868: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.c -** Message: 01:31:04.784: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] -** Message: 01:31:04.784: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] to archive +** Message: 10:13:38.609: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] +** Message: 10:13:38.609: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_score.o -** Message: 01:31:04.822: Adding function [optimal_58_protein2dna_58_local_32_find_32_score] -** Message: 01:31:04.822: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] -** Message: 01:31:04.822: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] to archive +** Message: 10:13:38.646: Adding function [optimal_58_protein2dna_58_local_32_find_32_score] +** Message: 10:13:38.646: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] +** Message: 10:13:38.646: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path.o -** Message: 01:31:04.859: Adding function [optimal_58_protein2dna_58_local_32_find_32_path] -** Message: 01:31:04.859: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] -** Message: 01:31:04.859: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] to archive +** Message: 10:13:38.676: Adding function [optimal_58_protein2dna_58_local_32_find_32_path] +** Message: 10:13:38.677: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] +** Message: 10:13:38.677: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_region.o -** Message: 01:31:04.896: Adding function [optimal_58_protein2dna_58_local_32_find_32_region] -** Message: 01:31:04.896: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] -** Message: 01:31:04.896: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] to archive +** Message: 10:13:38.704: Adding function [optimal_58_protein2dna_58_local_32_find_32_region] +** Message: 10:13:38.704: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] +** Message: 10:13:38.704: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_checkpoint.o -** Message: 01:31:04.933: Adding function [optimal_58_protein2dna_58_local_32_find_32_checkpoint] -** Message: 01:31:04.933: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] -** Message: 01:31:04.933: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] to archive +** Message: 10:13:38.743: Adding function [optimal_58_protein2dna_58_local_32_find_32_checkpoint] +** Message: 10:13:38.743: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] +** Message: 10:13:38.743: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_local_32_find_32_path_32_continuation.o -** Message: 01:31:04.970: Adding function [optimal_58_protein2dna_58_local_32_find_32_path_32_continuation] -** Message: 01:31:04.984: Process optimal [Terminal [Segment("START"->"match"):[protein2dna:local]]] -** Message: 01:31:04.986: Compiling codegen: +** Message: 10:13:38.779: Adding function [optimal_58_protein2dna_58_local_32_find_32_path_32_continuation] +** Message: 10:13:38.793: Process optimal [Terminal [Segment("START"->"match"):[protein2dna:local]]] +** Message: 10:13:38.795: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c -** Message: 01:31:06.470: Compiling codegen: +** Message: 10:13:40.098: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c -** Message: 01:31:08.539: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] -** Message: 01:31:08.539: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:13:42.427: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] +** Message: 10:13:42.427: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -** Message: 01:31:08.563: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] -** Message: 01:31:08.563: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] -** Message: 01:31:08.563: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:13:42.451: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] +** Message: 10:13:42.451: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] +** Message: 10:13:42.451: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -** Message: 01:31:08.601: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] -** Message: 01:31:08.601: Process optimal [Terminal [Segment("match"->"END"):[protein2dna:local]]] -** Message: 01:31:08.603: Compiling codegen: +** Message: 10:13:42.475: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] +** Message: 10:13:42.475: Process optimal [Terminal [Segment("match"->"END"):[protein2dna:local]]] +** Message: 10:13:42.476: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c -** Message: 01:31:09.530: Compiling codegen: +** Message: 10:13:43.793: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c -** Message: 01:31:10.769: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] -** Message: 01:31:10.770: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:13:45.413: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] +** Message: 10:13:45.413: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -** Message: 01:31:10.807: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] -** Message: 01:31:10.807: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] -** Message: 01:31:10.807: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:13:45.458: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] +** Message: 10:13:45.459: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] +** Message: 10:13:45.459: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -** Message: 01:31:10.827: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] -** Message: 01:31:10.827: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2dna:local]]] -** Message: 01:31:10.831: Compiling codegen: +** Message: 10:13:45.510: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] +** Message: 10:13:45.510: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2dna:local]]] +** Message: 10:13:45.512: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.c -** Message: 01:31:13.619: Compiling codegen: +** Message: 10:13:50.740: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.c -** Message: 01:31:17.931: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] -** Message: 01:31:17.931: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:14:00.552: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] +** Message: 10:14:00.552: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score.o -** Message: 01:31:17.970: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] -** Message: 01:31:17.970: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] -** Message: 01:31:17.970: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:14:00.590: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_score] +** Message: 10:14:00.590: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] +** Message: 10:14:00.590: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path.o -** Message: 01:31:18.009: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] -** Message: 01:31:18.009: Compiling codegen: +** Message: 10:14:00.641: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2dna_58_local_93__93__32_find_32_path] +** Message: 10:14:00.642: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.c -** Message: 01:31:18.325: Compiling codegen: +** Message: 10:14:01.012: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.c -** Message: 01:31:18.655: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] -** Message: 01:31:18.656: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] to archive +** Message: 10:14:01.592: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] +** Message: 10:14:01.592: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded.o -** Message: 01:31:18.695: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded] -** Message: 01:31:18.695: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] -** Message: 01:31:18.695: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] to archive +** Message: 10:14:01.613: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_reverse_58_traceback_58_seeded] +** Message: 10:14:01.613: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] +** Message: 10:14:01.613: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded.o -** Message: 01:31:18.734: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded] -** Message: 01:31:18.734: Processing model [p2d:b] -** Message: 01:31:18.735: Bootstrapper processing model [protein2dna:bestfit] -** Message: 01:31:18.735: Process optimal [optimal:protein2dna:bestfit] -** Message: 01:31:18.738: Compiling codegen: +** Message: 10:14:01.634: Adding function [Scheduler_Cell_process_protein2dna_58_local_58_forward_58_traceback_58_seeded] +** Message: 10:14:01.635: Processing model [p2d:b] +** Message: 10:14:01.635: Bootstrapper processing model [protein2dna:bestfit] +** Message: 10:14:01.635: Process optimal [optimal:protein2dna:bestfit] +** Message: 10:14:01.636: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.c -** Message: 01:31:20.462: Compiling codegen: +** Message: 10:14:04.557: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.c -** Message: 01:31:23.165: Compiling codegen: +** Message: 10:14:08.001: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.c -** Message: 01:31:25.673: Compiling codegen: +** Message: 10:14:11.860: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.c -** Message: 01:31:27.284: Compiling codegen: +** Message: 10:14:14.112: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.c -** Message: 01:31:29.122: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] -** Message: 01:31:29.122: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] to archive +** Message: 10:14:17.197: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] +** Message: 10:14:17.198: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_score.o -** Message: 01:31:29.147: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_score] -** Message: 01:31:29.147: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] -** Message: 01:31:29.147: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] to archive +** Message: 10:14:17.249: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_score] +** Message: 10:14:17.249: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] +** Message: 10:14:17.249: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path.o -** Message: 01:31:29.177: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path] -** Message: 01:31:29.177: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] -** Message: 01:31:29.177: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] to archive +** Message: 10:14:17.300: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path] +** Message: 10:14:17.300: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] +** Message: 10:14:17.300: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_region.o -** Message: 01:31:29.204: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_region] -** Message: 01:31:29.204: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] -** Message: 01:31:29.204: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] to archive +** Message: 10:14:17.352: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_region] +** Message: 10:14:17.353: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] +** Message: 10:14:17.353: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint.o -** Message: 01:31:29.243: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint] -** Message: 01:31:29.243: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] -** Message: 01:31:29.243: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] to archive +** Message: 10:14:17.405: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_checkpoint] +** Message: 10:14:17.405: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] +** Message: 10:14:17.405: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation.o -** Message: 01:31:29.284: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation] -** Message: 01:31:29.284: Processing model [p2g] -** Message: 01:31:29.285: Bootstrapper processing model [protein2genome:local] -** Message: 01:31:29.285: Process optimal [optimal:protein2genome:local] -** Message: 01:31:29.287: Compiling codegen: +** Message: 10:14:17.457: Adding function [optimal_58_protein2dna_58_bestfit_32_find_32_path_32_continuation] +** Message: 10:14:17.458: Processing model [p2g] +** Message: 10:14:17.458: Bootstrapper processing model [protein2genome:local] +** Message: 10:14:17.458: Process optimal [optimal:protein2genome:local] +** Message: 10:14:17.459: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.c -** Message: 01:31:30.929: Compiling codegen: +** Message: 10:14:20.396: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.c -** Message: 01:31:33.305: Compiling codegen: +** Message: 10:14:23.500: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.c -** Message: 01:31:35.456: Compiling codegen: +** Message: 10:14:26.770: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.c -** Message: 01:31:41.283: Compiling codegen: +** Message: 10:14:34.650: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.c -** Message: 01:31:49.983: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] -** Message: 01:31:49.983: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] to archive +** Message: 10:14:44.675: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] +** Message: 10:14:44.675: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_score.o -** Message: 01:31:50.003: Adding function [optimal_58_protein2genome_58_local_32_find_32_score] -** Message: 01:31:50.003: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] -** Message: 01:31:50.003: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] to archive +** Message: 10:14:44.725: Adding function [optimal_58_protein2genome_58_local_32_find_32_score] +** Message: 10:14:44.725: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] +** Message: 10:14:44.725: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path.o -** Message: 01:31:50.045: Adding function [optimal_58_protein2genome_58_local_32_find_32_path] -** Message: 01:31:50.045: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] -** Message: 01:31:50.045: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] to archive +** Message: 10:14:44.778: Adding function [optimal_58_protein2genome_58_local_32_find_32_path] +** Message: 10:14:44.778: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] +** Message: 10:14:44.778: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_region.o -** Message: 01:31:50.086: Adding function [optimal_58_protein2genome_58_local_32_find_32_region] -** Message: 01:31:50.086: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] -** Message: 01:31:50.086: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] to archive +** Message: 10:14:44.829: Adding function [optimal_58_protein2genome_58_local_32_find_32_region] +** Message: 10:14:44.829: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] +** Message: 10:14:44.830: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_checkpoint.o -** Message: 01:31:50.127: Adding function [optimal_58_protein2genome_58_local_32_find_32_checkpoint] -** Message: 01:31:50.127: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] -** Message: 01:31:50.127: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] to archive +** Message: 10:14:44.881: Adding function [optimal_58_protein2genome_58_local_32_find_32_checkpoint] +** Message: 10:14:44.881: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] +** Message: 10:14:44.881: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_local_32_find_32_path_32_continuation.o -** Message: 01:31:50.168: Adding function [optimal_58_protein2genome_58_local_32_find_32_path_32_continuation] -** Message: 01:31:50.222: Process optimal [Terminal [Segment("START"->"match"):[protein2genome:local]]] -** Message: 01:31:50.228: Compiling codegen: +** Message: 10:14:44.933: Adding function [optimal_58_protein2genome_58_local_32_find_32_path_32_continuation] +** Message: 10:14:44.973: Process optimal [Terminal [Segment("START"->"match"):[protein2genome:local]]] +** Message: 10:14:44.975: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:31:56.292: Compiling codegen: +** Message: 10:14:53.746: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:32:06.935: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:32:06.935: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:15:07.935: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:15:07.936: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:32:06.958: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:32:06.958: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:32:06.958: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:15:07.988: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:15:07.988: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:15:07.988: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:32:06.982: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:32:06.982: Process optimal [Terminal [Segment("match"->"END"):[protein2genome:local]]] -** Message: 01:32:06.985: Compiling codegen: +** Message: 10:15:08.043: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:15:08.043: Process optimal [Terminal [Segment("match"->"END"):[protein2genome:local]]] +** Message: 10:15:08.045: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:32:10.032: Compiling codegen: +** Message: 10:15:12.611: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:32:14.954: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:32:14.955: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:15:21.015: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:15:21.015: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:32:14.999: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:32:14.999: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:32:14.999: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:15:21.062: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:15:21.063: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:15:21.064: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:32:15.043: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:32:15.043: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2genome:local]]] -** Message: 01:32:15.053: Compiling codegen: +** Message: 10:15:21.095: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:15:21.096: Process optimal [HeuristicJoin:[Segment("match"->"match"):[protein2genome:local]]] +** Message: 10:15:21.099: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:32:30.075: Compiling codegen: +** Message: 10:15:44.764: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:32:59.479: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:32:59.479: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:16:33.515: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:16:33.515: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:32:59.501: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:32:59.501: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:32:59.501: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:16:33.543: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:16:33.543: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:16:33.543: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:32:59.547: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:32:59.547: Process optimal [Src span [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] -** Message: 01:32:59.550: Compiling codegen: +** Message: 10:16:33.575: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:16:33.575: Process optimal [Src span [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] +** Message: 10:16:33.577: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:33:02.828: Compiling codegen: +** Message: 10:16:37.281: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:33:07.900: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:33:07.900: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:16:43.452: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:16:43.453: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:33:07.947: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:33:07.947: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:33:07.947: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:16:43.479: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:16:43.479: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:16:43.479: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:33:07.996: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:33:07.996: Process optimal [Src span traceback [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] -** Message: 01:33:08.005: Compiling codegen: +** Message: 10:16:43.505: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:16:43.506: Process optimal [Src span traceback [Segment("match"->"intron 0:0 phase-T"):[protein2genome:local]]] +** Message: 10:16:43.509: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:33:31.536: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:33:31.536: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:17:20.191: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:17:20.191: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:33:31.562: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:33:31.562: Process optimal [Dst span [Segment("intron 0:0 phase-T"->"match"):[protein2genome:local]]] -** Message: 01:33:31.568: Compiling codegen: +** Message: 10:17:20.235: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_0_58_0_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:17:20.236: Process optimal [Dst span [Segment("intron 0:0 phase-T"->"match"):[protein2genome:local]]] +** Message: 10:17:20.239: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:33:38.003: Compiling codegen: +** Message: 10:17:30.573: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:33:50.349: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:33:50.349: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:17:43.680: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:17:43.680: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:33:50.399: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:33:50.399: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:33:50.399: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:17:43.705: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:17:43.705: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:17:43.705: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:33:50.450: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:33:50.450: Process optimal [Src span [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] -** Message: 01:33:50.453: Compiling codegen: +** Message: 10:17:43.756: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_0_58_0_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:17:43.756: Process optimal [Src span [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] +** Message: 10:17:43.760: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:33:53.839: Compiling codegen: +** Message: 10:17:47.009: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:33:59.308: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:33:59.308: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:17:52.314: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:17:52.314: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:33:59.361: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:33:59.361: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:33:59.361: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:17:52.363: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:17:52.363: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:17:52.363: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:33:59.414: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:33:59.414: Process optimal [Src span traceback [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] -** Message: 01:33:59.424: Compiling codegen: +** Message: 10:17:52.394: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:17:52.394: Process optimal [Src span traceback [Segment("match"->"intron 1:2 phase-T"):[protein2genome:local]]] +** Message: 10:17:52.399: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:34:22.423: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:34:22.423: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:18:20.842: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:18:20.842: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:34:22.450: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:34:22.450: Process optimal [Dst span [Segment("intron 1:2 phase-T"->"match"):[protein2genome:local]]] -** Message: 01:34:22.456: Compiling codegen: +** Message: 10:18:20.869: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_1_58_2_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:18:20.869: Process optimal [Dst span [Segment("intron 1:2 phase-T"->"match"):[protein2genome:local]]] +** Message: 10:18:20.876: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:34:28.807: Compiling codegen: +** Message: 10:18:27.350: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:34:40.920: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:34:40.920: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:18:39.712: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:18:39.712: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:34:40.948: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:34:40.948: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:34:40.948: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:18:39.765: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:18:39.765: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:18:39.765: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:34:40.993: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:34:40.993: Process optimal [Src span [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] -** Message: 01:34:40.996: Compiling codegen: +** Message: 10:18:39.817: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_1_58_2_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:18:39.817: Process optimal [Src span [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] +** Message: 10:18:39.821: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:34:44.457: Compiling codegen: +** Message: 10:18:43.186: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:34:49.791: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:34:49.791: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:18:48.335: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:18:48.335: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:34:49.847: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:34:49.847: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:34:49.847: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:18:48.390: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:18:48.390: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:18:48.390: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:34:49.901: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:34:49.901: Process optimal [Src span traceback [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] -** Message: 01:34:49.911: Compiling codegen: +** Message: 10:18:48.446: Adding function [Src_32_span_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:18:48.446: Process optimal [Src span traceback [Segment("match"->"intron 2:1 phase-T"):[protein2genome:local]]] +** Message: 10:18:48.456: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:35:14.869: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:35:14.869: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:19:11.786: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:19:11.786: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:35:14.919: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:35:14.919: Process optimal [Dst span [Segment("intron 2:1 phase-T"->"match"):[protein2genome:local]]] -** Message: 01:35:14.922: Compiling codegen: +** Message: 10:19:11.842: Adding function [Src_32_span_32_traceback_32__91_Segment_40__34_match_34__45__62__34_intron_32_2_58_1_32_phase_45_T_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:19:11.842: Process optimal [Dst span [Segment("intron 2:1 phase-T"->"match"):[protein2genome:local]]] +** Message: 10:19:11.849: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.c -** Message: 01:35:22.046: Compiling codegen: +** Message: 10:19:19.927: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.c -** Message: 01:35:34.372: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] -** Message: 01:35:34.372: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive +** Message: 10:19:32.707: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] +** Message: 10:19:32.707: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score.o -** Message: 01:35:34.421: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] -** Message: 01:35:34.421: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] -** Message: 01:35:34.421: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive +** Message: 10:19:32.750: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_score] +** Message: 10:19:32.750: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] +** Message: 10:19:32.750: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path.o -** Message: 01:35:34.465: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] -** Message: 01:35:34.466: Compiling codegen: +** Message: 10:19:32.777: Adding function [Dst_32_span_32__91_Segment_40__34_intron_32_2_58_1_32_phase_45_T_34__45__62__34_match_34__41__58__91_protein2genome_58_local_93__93__32_find_32_path] +** Message: 10:19:32.778: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.c -** Message: 01:35:34.933: Compiling codegen: +** Message: 10:19:33.190: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.c -** Message: 01:35:35.455: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] -** Message: 01:35:35.455: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] to archive +** Message: 10:19:33.871: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] +** Message: 10:19:33.872: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary.o -** Message: 01:35:35.510: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary] -** Message: 01:35:35.510: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] -** Message: 01:35:35.510: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] to archive +** Message: 10:19:33.911: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_reverse_58_notraceback_58_boundary] +** Message: 10:19:33.912: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] +** Message: 10:19:33.912: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary.o -** Message: 01:35:35.553: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary] -** Message: 01:35:35.553: Processing model [p2g:b] -** Message: 01:35:35.554: Bootstrapper processing model [protein2genome:bestfit] -** Message: 01:35:35.554: Process optimal [optimal:protein2genome:bestfit] -** Message: 01:35:35.561: Compiling codegen: +** Message: 10:19:33.940: Adding function [Scheduler_Cell_process_protein2genome_58_local_58_forward_58_traceback_58_boundary] +** Message: 10:19:33.940: Processing model [p2g:b] +** Message: 10:19:33.940: Bootstrapper processing model [protein2genome:bestfit] +** Message: 10:19:33.941: Process optimal [optimal:protein2genome:bestfit] +** Message: 10:19:33.943: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.c -** Message: 01:35:43.380: Compiling codegen: +** Message: 10:19:43.119: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.c -** Message: 01:35:58.180: Compiling codegen: +** Message: 10:20:03.186: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.c -** Message: 01:36:08.269: Compiling codegen: +** Message: 10:20:19.432: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.c -** Message: 01:36:13.984: Compiling codegen: +** Message: 10:20:27.489: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.c -** Message: 01:36:22.809: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] -** Message: 01:36:22.809: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] to archive +** Message: 10:20:39.933: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] +** Message: 10:20:39.933: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_score.o -** Message: 01:36:22.852: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_score] -** Message: 01:36:22.852: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] -** Message: 01:36:22.852: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] to archive +** Message: 10:20:40.004: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_score] +** Message: 10:20:40.004: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] +** Message: 10:20:40.004: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path.o -** Message: 01:36:22.910: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path] -** Message: 01:36:22.910: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] -** Message: 01:36:22.910: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] to archive +** Message: 10:20:40.128: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path] +** Message: 10:20:40.128: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] +** Message: 10:20:40.133: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_region.o -** Message: 01:36:22.958: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_region] -** Message: 01:36:22.958: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] -** Message: 01:36:22.958: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] to archive +** Message: 10:20:40.227: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_region] +** Message: 10:20:40.227: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] +** Message: 10:20:40.227: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint.o -** Message: 01:36:23.004: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint] -** Message: 01:36:23.004: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] -** Message: 01:36:23.004: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] to archive +** Message: 10:20:40.271: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_checkpoint] +** Message: 10:20:40.271: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] +** Message: 10:20:40.271: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation.o -** Message: 01:36:23.062: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation] -** Message: 01:36:23.062: Processing model [c2c] -** Message: 01:36:23.063: Bootstrapper processing model [coding2coding] -** Message: 01:36:23.063: Process optimal [optimal:coding2coding] -** Message: 01:36:23.066: Compiling codegen: +** Message: 10:20:40.790: Adding function [optimal_58_protein2genome_58_bestfit_32_find_32_path_32_continuation] +** Message: 10:20:40.791: Processing model [c2c] +** Message: 10:20:40.791: Bootstrapper processing model [coding2coding] +** Message: 10:20:40.791: Process optimal [optimal:coding2coding] +** Message: 10:20:40.792: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.c -** Message: 01:36:24.356: Compiling codegen: +** Message: 10:20:44.689: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.c -** Message: 01:36:26.177: Compiling codegen: +** Message: 10:20:48.548: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.c -** Message: 01:36:28.305: Compiling codegen: +** Message: 10:20:50.925: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.c -** Message: 01:36:32.502: Compiling codegen: +** Message: 10:21:00.638: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.c -** Message: 01:36:37.998: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] -** Message: 01:36:37.998: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] to archive +** Message: 10:21:07.487: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] +** Message: 10:21:07.487: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_score.o -** Message: 01:36:38.057: Adding function [optimal_58_coding2coding_32_find_32_score] -** Message: 01:36:38.057: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] -** Message: 01:36:38.057: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] to archive +** Message: 10:21:07.531: Adding function [optimal_58_coding2coding_32_find_32_score] +** Message: 10:21:07.532: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] +** Message: 10:21:07.532: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path.o -** Message: 01:36:38.114: Adding function [optimal_58_coding2coding_32_find_32_path] -** Message: 01:36:38.114: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] -** Message: 01:36:38.115: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] to archive +** Message: 10:21:07.572: Adding function [optimal_58_coding2coding_32_find_32_path] +** Message: 10:21:07.572: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] +** Message: 10:21:07.572: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_region.o -** Message: 01:36:38.156: Adding function [optimal_58_coding2coding_32_find_32_region] -** Message: 01:36:38.156: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] -** Message: 01:36:38.156: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive +** Message: 10:21:07.609: Adding function [optimal_58_coding2coding_32_find_32_region] +** Message: 10:21:07.609: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] +** Message: 10:21:07.609: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_checkpoint.o -** Message: 01:36:38.217: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] -** Message: 01:36:38.217: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] -** Message: 01:36:38.217: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive +** Message: 10:21:07.645: Adding function [optimal_58_coding2coding_32_find_32_checkpoint] +** Message: 10:21:07.645: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] +** Message: 10:21:07.646: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2coding_32_find_32_path_32_continuation.o -** Message: 01:36:38.277: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] -** Message: 01:36:38.304: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] -** Message: 01:36:38.308: Compiling codegen: +** Message: 10:21:07.686: Adding function [optimal_58_coding2coding_32_find_32_path_32_continuation] +** Message: 10:21:07.705: Process optimal [Terminal [Segment("START"->"match"):[coding2coding]]] +** Message: 10:21:07.709: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c -** Message: 01:36:42.247: Compiling codegen: +** Message: 10:21:14.114: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c -** Message: 01:36:48.668: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] -** Message: 01:36:48.668: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive +** Message: 10:21:22.600: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] +** Message: 10:21:22.600: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -** Message: 01:36:48.711: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] -** Message: 01:36:48.711: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] -** Message: 01:36:48.711: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive +** Message: 10:21:22.654: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] +** Message: 10:21:22.654: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] +** Message: 10:21:22.654: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -** Message: 01:36:48.774: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] -** Message: 01:36:48.774: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] -** Message: 01:36:48.777: Compiling codegen: +** Message: 10:21:22.736: Adding function [Terminal_32__91_Segment_40__34_START_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] +** Message: 10:21:22.737: Process optimal [Terminal [Segment("match"->"END"):[coding2coding]]] +** Message: 10:21:22.738: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.c -** Message: 01:36:50.865: Compiling codegen: +** Message: 10:21:25.324: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.c -** Message: 01:36:53.834: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] -** Message: 01:36:53.834: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive +** Message: 10:21:28.849: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] +** Message: 10:21:28.849: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score.o -** Message: 01:36:53.868: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] -** Message: 01:36:53.868: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] -** Message: 01:36:53.868: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive +** Message: 10:21:28.883: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_score] +** Message: 10:21:28.883: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] +** Message: 10:21:28.883: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path.o -** Message: 01:36:53.903: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] -** Message: 01:36:53.903: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] -** Message: 01:36:53.906: Compiling codegen: +** Message: 10:21:28.917: Adding function [Terminal_32__91_Segment_40__34_match_34__45__62__34_END_34__41__58__91_coding2coding_93__93__32_find_32_path] +** Message: 10:21:28.918: Process optimal [HeuristicJoin:[Segment("match"->"match"):[coding2coding]]] +** Message: 10:21:28.921: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.c -** Message: 01:37:02.459: Compiling codegen: +** Message: 10:21:39.748: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.c -** Message: 01:37:17.576: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] -** Message: 01:37:17.576: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive +** Message: 10:22:04.067: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] +** Message: 10:22:04.067: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score.o -** Message: 01:37:17.611: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] -** Message: 01:37:17.611: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] -** Message: 01:37:17.611: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive +** Message: 10:22:04.133: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_score] +** Message: 10:22:04.134: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] +** Message: 10:22:04.134: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path.o -** Message: 01:37:17.649: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] -** Message: 01:37:17.649: Compiling codegen: +** Message: 10:22:04.177: Adding function [HeuristicJoin_58__91_Segment_40__34_match_34__45__62__34_match_34__41__58__91_coding2coding_93__93__32_find_32_path] +** Message: 10:22:04.177: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.c -** Message: 01:37:17.971: Compiling codegen: +** Message: 10:22:04.600: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.c -** Message: 01:37:18.312: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] -** Message: 01:37:18.312: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive +** Message: 10:22:05.348: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] +** Message: 10:22:05.348: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded.o -** Message: 01:37:18.350: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] -** Message: 01:37:18.350: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] -** Message: 01:37:18.350: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive +** Message: 10:22:05.403: Adding function [Scheduler_Cell_process_coding2coding_58_reverse_58_traceback_58_seeded] +** Message: 10:22:05.403: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] +** Message: 10:22:05.404: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded.o -** Message: 01:37:18.386: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] -** Message: 01:37:18.386: Processing model [c2g] -** Message: 01:37:18.387: Bootstrapper processing model [coding2genome] -** Message: 01:37:18.387: Process optimal [optimal:coding2genome] -** Message: 01:37:18.389: Compiling codegen: +** Message: 10:22:05.495: Adding function [Scheduler_Cell_process_coding2coding_58_forward_58_traceback_58_seeded] +** Message: 10:22:05.495: Processing model [c2g] +** Message: 10:22:05.496: Bootstrapper processing model [coding2genome] +** Message: 10:22:05.496: Process optimal [optimal:coding2genome] +** Message: 10:22:05.498: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.c -** Message: 01:37:22.875: Compiling codegen: +** Message: 10:22:10.737: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.c -** Message: 01:37:30.181: Compiling codegen: +** Message: 10:22:21.213: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.c -** Message: 01:37:36.487: Compiling codegen: +** Message: 10:22:28.570: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.c -** Message: 01:37:57.734: Compiling codegen: +** Message: 10:23:04.188: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.c -** Message: 01:38:53.874: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] -** Message: 01:38:53.875: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] to archive +** Message: 10:24:01.942: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] +** Message: 10:24:01.942: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_score.o -** Message: 01:38:53.931: Adding function [optimal_58_coding2genome_32_find_32_score] -** Message: 01:38:53.931: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] -** Message: 01:38:53.931: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] to archive +** Message: 10:24:01.977: Adding function [optimal_58_coding2genome_32_find_32_score] +** Message: 10:24:01.977: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] +** Message: 10:24:01.978: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path.o -** Message: 01:38:53.977: Adding function [optimal_58_coding2genome_32_find_32_path] -** Message: 01:38:53.977: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] -** Message: 01:38:53.977: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] to archive +** Message: 10:24:02.017: Adding function [optimal_58_coding2genome_32_find_32_path] +** Message: 10:24:02.017: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] +** Message: 10:24:02.017: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_region.o -** Message: 01:38:54.019: Adding function [optimal_58_coding2genome_32_find_32_region] -** Message: 01:38:54.019: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] -** Message: 01:38:54.019: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive +** Message: 10:24:02.055: Adding function [optimal_58_coding2genome_32_find_32_region] +** Message: 10:24:02.055: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] +** Message: 10:24:02.056: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_checkpoint.o -** Message: 01:38:54.075: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] -** Message: 01:38:54.075: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] -** Message: 01:38:54.075: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive +** Message: 10:24:02.102: Adding function [optimal_58_coding2genome_32_find_32_checkpoint] +** Message: 10:24:02.102: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] +** Message: 10:24:02.102: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_coding2genome_32_find_32_path_32_continuation.o -** Message: 01:38:54.142: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] -** Message: 01:38:54.142: Compiling codegen: +** Message: 10:24:02.144: Adding function [optimal_58_coding2genome_32_find_32_path_32_continuation] +** Message: 10:24:02.145: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.c -** Message: 01:38:54.714: Compiling codegen: +** Message: 10:24:02.644: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.c -** Message: 01:38:55.391: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] -** Message: 01:38:55.391: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive +** Message: 10:24:03.225: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] +** Message: 10:24:03.225: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary.o -** Message: 01:38:55.470: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] -** Message: 01:38:55.470: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] -** Message: 01:38:55.470: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive +** Message: 10:24:03.262: Adding function [Scheduler_Cell_process_coding2genome_58_reverse_58_notraceback_58_boundary] +** Message: 10:24:03.262: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] +** Message: 10:24:03.262: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary.o -** Message: 01:38:55.527: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] -** Message: 01:38:55.527: Processing model [cd2g] -** Message: 01:38:55.528: Bootstrapper processing model [cdna2genome] -** Message: 01:38:55.528: Process optimal [optimal:cdna2genome] -** Message: 01:38:55.531: Compiling codegen: +** Message: 10:24:03.308: Adding function [Scheduler_Cell_process_coding2genome_58_forward_58_traceback_58_boundary] +** Message: 10:24:03.308: Processing model [cd2g] +** Message: 10:24:03.309: Bootstrapper processing model [cdna2genome] +** Message: 10:24:03.309: Process optimal [optimal:cdna2genome] +** Message: 10:24:03.312: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.c -** Message: 01:39:17.060: Compiling codegen: +** Message: 10:24:20.485: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.c -** Message: 01:39:57.590: Compiling codegen: +** Message: 10:25:01.736: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.c -** Message: 01:40:25.796: Compiling codegen: +** Message: 10:25:26.117: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.c -** Message: 01:42:25.635: Compiling codegen: +** Message: 10:27:20.952: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.c -** Message: 01:45:18.244: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] -** Message: 01:45:18.244: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] to archive +** Message: 10:30:41.022: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] +** Message: 10:30:41.027: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_score.o -** Message: 01:45:18.313: Adding function [optimal_58_cdna2genome_32_find_32_score] -** Message: 01:45:18.313: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] -** Message: 01:45:18.313: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] to archive +** Message: 10:30:52.892: Adding function [optimal_58_cdna2genome_32_find_32_score] +** Message: 10:30:52.892: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] +** Message: 10:30:52.892: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path.o -** Message: 01:45:18.382: Adding function [optimal_58_cdna2genome_32_find_32_path] -** Message: 01:45:18.383: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] -** Message: 01:45:18.383: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] to archive +** Message: 10:30:53.250: Adding function [optimal_58_cdna2genome_32_find_32_path] +** Message: 10:30:53.254: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] +** Message: 10:30:53.254: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_region.o -** Message: 01:45:18.454: Adding function [optimal_58_cdna2genome_32_find_32_region] -** Message: 01:45:18.454: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] -** Message: 01:45:18.454: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive +** Message: 10:30:53.547: Adding function [optimal_58_cdna2genome_32_find_32_region] +** Message: 10:30:53.547: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] +** Message: 10:30:53.547: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_checkpoint.o -** Message: 01:45:18.508: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] -** Message: 01:45:18.508: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] -** Message: 01:45:18.508: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive +** Message: 10:30:54.243: Adding function [optimal_58_cdna2genome_32_find_32_checkpoint] +** Message: 10:30:54.243: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] +** Message: 10:30:54.243: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/optimal_58_cdna2genome_32_find_32_path_32_continuation.o -** Message: 01:45:18.583: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] -** Message: 01:45:18.584: Compiling codegen: +** Message: 10:30:54.332: Adding function [optimal_58_cdna2genome_32_find_32_path_32_continuation] +** Message: 10:30:54.340: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.c -** Message: 01:45:19.631: Compiling codegen: +** Message: 10:30:56.456: Compiling codegen: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -I/build/reproducible-path/exonerate-2.4.0/src/model -I/build/reproducible-path/exonerate-2.4.0/src/comparison -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/bsdp -I/build/reproducible-path/exonerate-2.4.0/src/sdp -o /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -c /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.c -** Message: 01:45:20.831: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] -** Message: 01:45:20.831: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive +** Message: 10:30:59.105: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] +** Message: 10:30:59.105: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary.o -** Message: 01:45:20.907: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] -** Message: 01:45:20.907: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] -** Message: 01:45:20.907: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive +** Message: 10:30:59.194: Adding function [Scheduler_Cell_process_cdna2genome_58_reverse_58_notraceback_58_boundary] +** Message: 10:30:59.195: Adding: [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] +** Message: 10:30:59.195: Adding object file [/build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o] to archive ar -Sq c4_model_archive.a /build/reproducible-path/exonerate-2.4.0/codegen/aarch64_45_unknown_45_linux_45_gnu/Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary.o -** Message: 01:45:20.984: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] -** Message: 01:45:20.985: Compiling with: [gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -o c4_model_lookup.o -c c4_model_lookup.c] -** Message: 01:45:21.307: Adding: [c4_model_lookup.o] -** Message: 01:45:21.307: Adding object file [c4_model_lookup.o] to archive +** Message: 10:30:59.282: Adding function [Scheduler_Cell_process_cdna2genome_58_forward_58_traceback_58_boundary] +** Message: 10:30:59.285: Compiling with: [gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -I/build/reproducible-path/exonerate-2.4.0/src/c4 -I/build/reproducible-path/exonerate-2.4.0/src/sequence -I/build/reproducible-path/exonerate-2.4.0/src/general -I/build/reproducible-path/exonerate-2.4.0/src/struct -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -o c4_model_lookup.o -c c4_model_lookup.c] +** Message: 10:30:59.958: Adding: [c4_model_lookup.o] +** Message: 10:30:59.958: Adding object file [c4_model_lookup.o] to archive ar -Sq c4_model_archive.a c4_model_lookup.o -** Message: 01:45:21.384: Indexing archive [c4_model_archive.a] +** Message: 10:31:00.035: Indexing archive [c4_model_archive.a] ranlib c4_model_archive.a -** Message: 01:45:21.508: Done -** Message: 01:45:21.508: Finished building bootstrapping components +** Message: 10:31:00.215: Done +** Message: 10:31:00.215: Finished building bootstrapping components make all-am make[4]: Entering directory '/build/reproducible-path/exonerate-2.4.0/src/program' gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/comparison -I../../src/struct -I../../src/c4 -I../../src/bsdp -I../../src/sdp -I../../src/model -I../../src/hub -I../../src/general -DHOSTTYPE="\"aarch64-unknown-linux-gnu\"" -DSOURCE_ROOT_DIR="\"/build/reproducible-path/exonerate-2.4.0\"" -DCUSTOM_GUINT64_FORMAT="\"llu\"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o exonerate.o exonerate.c @@ -3209,6 +3245,7 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastareformat.o fastareformat.c fastafetch.c: In function 'get_query_list': fastafetch.c:121:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] 121 | if(!g_strcasecmp(query, "stdin")){ @@ -3221,7 +3258,6 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastareformat.o fastareformat.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaremove.o fastaremove.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastarevcomp.o fastarevcomp.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastasoftmask.o fastasoftmask.c @@ -3231,30 +3267,6 @@ gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastatranslate.o fastatranslate.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastavalidcds.o fastavalidcds.c gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fasta2esd.o fasta2esd.c -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaannotatecdna.o fastaannotatecdna.c -fastasplit.c: In function 'Argument_main': -fastasplit.c:92:13: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] - 92 | output_dir, G_DIR_SEPARATOR, g_basename(query_path)); - | ^~~~~~~~~~ -In file included from /usr/include/glib-2.0/glib.h:50, - from ../../src/general/argument.h:26, - from fastasplit.c:20: -/usr/include/glib-2.0/glib/gfileutils.h:207:14: note: declared here - 207 | const gchar *g_basename (const gchar *file_name); - | ^~~~~~~~~~ -fastaremove.c: In function 'Argument_main': -fastaremove.c:73:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] - 73 | if(!g_strcasecmp(remove_path, "stdin")){ - | ^~ -In file included from /usr/include/glib-2.0/glib/gstring.h:37, - from /usr/include/glib-2.0/glib/giochannel.h:36, - from /usr/include/glib-2.0/glib.h:56, - from ../../src/general/argument.h:26, - from fastaremove.c:19: -/usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here - 268 | gint g_strcasecmp (const gchar *s1, - | ^~~~~~~~~~~~ -gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o esd2esi.o esd2esi.c fastasort.c: In function 'SortKey_Mask_create': fastasort.c:130:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] 130 | if(!g_strcasecmp(sort_key, "id")) @@ -3279,6 +3291,30 @@ /usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here 268 | gint g_strcasecmp (const gchar *s1, | ^~~~~~~~~~~~ +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o fastaannotatecdna.o fastaannotatecdna.c +gcc -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"exonerate\" -DVERSION=\"2.4.0\" -DHAVE_STDIO_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_STRINGS_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_UNISTD_H=1 -DSTDC_HEADERS=1 -DHAVE_LIMITS_H=1 -DHAVE_ERRNO_H=1 -DHAVE_MATH_H=1 -DHAVE_STRINGS_H=1 -DHAVE_CTYPE_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_TIME_H=1 -DHAVE_UNISTD_H=1 -I. -I../../src/sequence -I../../src/database -I../../src/struct -I../../src/comparison -I../../src/general -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -c -o esd2esi.o esd2esi.c +fastaremove.c: In function 'Argument_main': +fastaremove.c:73:5: warning: 'g_strcasecmp' is deprecated [-Wdeprecated-declarations] + 73 | if(!g_strcasecmp(remove_path, "stdin")){ + | ^~ +In file included from /usr/include/glib-2.0/glib/gstring.h:37, + from /usr/include/glib-2.0/glib/giochannel.h:36, + from /usr/include/glib-2.0/glib.h:56, + from ../../src/general/argument.h:26, + from fastaremove.c:19: +/usr/include/glib-2.0/glib/gstrfuncs.h:268:23: note: declared here + 268 | gint g_strcasecmp (const gchar *s1, + | ^~~~~~~~~~~~ +fastasplit.c: In function 'Argument_main': +fastasplit.c:92:13: warning: 'g_basename' is deprecated: Use 'g_path_get_basename' instead [-Wdeprecated-declarations] + 92 | output_dir, G_DIR_SEPARATOR, g_basename(query_path)); + | ^~~~~~~~~~ +In file included from /usr/include/glib-2.0/glib.h:50, + from ../../src/general/argument.h:26, + from fastasplit.c:20: +/usr/include/glib-2.0/glib/gfileutils.h:207:14: note: declared here + 207 | const gchar *g_basename (const gchar *file_name); + | ^~~~~~~~~~ gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaclean fastaclean.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastaclip fastaclip.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/exonerate-2.4.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -DG_DISABLE_ASSERT -O3 -finline-functions -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -DUSE_PTHREADS -Wl,-z,relro -Wl,-z,now -lgthread-2.0 -pthread -lglib-2.0 -lpthread -o fastachecksum fastachecksum.o ../../src/sequence/sequence.o ../../src/sequence/alphabet.o ../../src/sequence/splice.o ../../src/sequence/translate.o ../../src/database/fastadb.o ../../src/general/argument.o ../../src/general/compoundfile.o ../../src/general/lineparse.o ../../src/struct/sparsecache.o ../../src/struct/matrix.o -lm -lglib-2.0 @@ -3670,8 +3706,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'exonerate-dbgsym' in '../exonerate-dbgsym_2.4.0-5_arm64.deb'. dpkg-deb: building package 'exonerate' in '../exonerate_2.4.0-5_arm64.deb'. +dpkg-deb: building package 'exonerate-dbgsym' in '../exonerate-dbgsym_2.4.0-5_arm64.deb'. dpkg-genbuildinfo --build=binary -O../exonerate_2.4.0-5_arm64.buildinfo dpkg-genchanges --build=binary -O../exonerate_2.4.0-5_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -3679,12 +3715,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1675563/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4045014 and its subdirectories -I: Current time: Mon Jul 28 01:45:38 -12 2025 -I: pbuilder-time-stamp: 1753710338 +I: removing directory /srv/workspace/pbuilder/1675563 and its subdirectories +I: Current time: Mon Aug 31 10:31:31 +14 2026 +I: pbuilder-time-stamp: 1788121891