Diff of the two buildlogs: -- --- b1/build.log 2025-10-20 04:11:34.672308968 +0000 +++ b2/build.log 2025-10-20 04:15:14.852597480 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 21 22:31:52 -12 2026 -I: pbuilder-time-stamp: 1795343512 +I: Current time: Mon Oct 20 18:11:36 +14 2025 +I: pbuilder-time-stamp: 1760933496 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -25,53 +25,85 @@ dpkg-source: info: applying fix-ftbfs-gcc-15.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3198097/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 20 04:11 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='0979333aa06b4964b8efd3e7e107a4ed' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3198097' - PS1='# ' - PS2='> ' + INVOCATION_ID=7a02deea70d74901a7ad76dd981ae5d6 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2419779 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a3R7UizH/pbuilderrc_bPC1 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a3R7UizH/b1 --logfile b1/build.log freecontact_1.0.21-16.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.a3R7UizH/pbuilderrc_Njhm --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.a3R7UizH/b2 --logfile b2/build.log freecontact_1.0.21-16.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3198097/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -222,7 +254,7 @@ Get: 85 http://deb.debian.org/debian forky/main arm64 libxerces-c3.2t64 arm64 3.2.4+debian-1.3+b2 [787 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libxerces-c-dev arm64 3.2.4+debian-1.3+b2 [1650 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 xsdcxx arm64 4.0.0-10+b1 [1796 kB] -Fetched 195 MB in 2s (121 MB/s) +Fetched 195 MB in 1s (286 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) @@ -596,7 +628,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freecontact_1.0.21-16_source.changes +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/freecontact-1.0.21/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../freecontact_1.0.21-16_source.changes dpkg-buildpackage: info: source package freecontact dpkg-buildpackage: info: source version 1.0.21-16 dpkg-buildpackage: info: source distribution unstable @@ -1156,12 +1192,12 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' make all-am make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' -/bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp -/bin/bash ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 -libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o +/bin/sh ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libfreecontact_la-freecontact.lo `test -f 'freecontact.cpp' || echo './'`freecontact.cpp +/bin/sh ../libtool --tag=FC --mode=compile gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c -o libfreecontact_la-glassofast-real.lo `test -f 'glassofast-real.f90' || echo './'`glassofast-real.f90 libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c freecontact.cpp -fPIC -DPIC -o .libs/libfreecontact_la-freecontact.o -f951: Warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for Fortran +libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c glassofast-real.f90 -fPIC -o .libs/libfreecontact_la-glassofast-real.o cc1plus: warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for C++ +f951: Warning: '-Werror=' argument '-funroll-completely-grow-size' is not valid for Fortran libtool: compile: gfortran -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -c glassofast-real.f90 -o libfreecontact_la-glassofast-real.o >/dev/null 2>&1 In file included from freecontact.cpp:32: freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] @@ -1201,7 +1237,7 @@ 995 | if(__timing) (*__timing)["all"] = t_diff.tv_sec+t_diff.tv_usec/1e6; if(dbg) fprintf(stderr, "all done in %g secs\n", t_diff.tv_sec+t_diff.tv_usec/1e6); } | ^~ libtool: compile: g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c freecontact.cpp -o libfreecontact_la-freecontact.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/aarch64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lgfortran -lm -lblas -llapack +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -Wall -fvisibility=hidden -falign-functions -falign-jumps -falign-labels -falign-loops -fbit-tests -fbranch-count-reg -fcaller-saves -fcode-hoisting -fcombine-stack-adjustments -fcompare-elim -fcprop-registers -fcrossjumping -fcse-follow-jumps -fdefer-pop -fdevirtualize -fdevirtualize-speculatively -fdse -fexpensive-optimizations -fext-dce -fforward-propagate -fgcse -fgcse-after-reload -fguess-branch-probability -fhoist-adjacent-loads -fif-conversion -fif-conversion2 -findirect-inlining -finline -finline-functions -finline-functions-called-once -finline-small-functions -fipa-bit-cp -fipa-cp -fipa-cp-clone -fipa-icf -fipa-icf-functions -fipa-icf-variables -fipa-modref -fipa-profile -fipa-pure-const -fipa-ra -fipa-reference -fipa-reference-addressable -fipa-sra -fipa-vrp -fisolate-erroneous-paths-dereference -fjump-tables -flate-combine-instructions -floop-interchange -floop-unroll-and-jam -flra-remat -fmove-loop-invariants -fmove-loop-stores -foptimize-crc -foptimize-sibling-calls -foptimize-strlen -fpartial-inlining -fpeel-loops -fpeephole2 -fpredictive-commoning -free -freorder-blocks -freorder-functions -frerun-cse-after-loop -fsched-pressure -fschedule-insns -fschedule-insns2 -fsection-anchors -fshrink-wrap -fsplit-loops -fsplit-paths -fsplit-wide-types -fssa-phiopt -fstore-merging -fstrict-aliasing -fthread-jumps -ftoplevel-reorder -ftree-bit-ccp -ftree-builtin-call-dce -ftree-ccp -ftree-ch -ftree-coalesce-vars -ftree-copy-prop -ftree-dce -ftree-dominator-opts -ftree-dse -ftree-fre -ftree-loop-distribute-patterns -ftree-loop-distribution -ftree-loop-vectorize -ftree-partial-pre -ftree-pre -ftree-pta -ftree-sink -ftree-slp-vectorize -ftree-slsr -ftree-sra -ftree-switch-conversion -ftree-tail-merge -ftree-ter -ftree-vrp -funreachable-traps -funroll-completely-grow-size -funswitch-loops -fversion-loops-for-strides -ffast-math -funroll-loops -ftree-vectorizer-verbose=0 -pthread -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -pthread -version-info 0:0:0 -Wl,-z,relro -Wl,-z,now -o libfreecontact.la -rpath /usr/lib/aarch64-linux-gnu libfreecontact_la-freecontact.lo libfreecontact_la-glassofast-real.lo -lrt -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lgfortran -lm -lblas -llapack libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o .libs/libfreecontact_la-freecontact.o .libs/libfreecontact_la-glassofast-real.o -lrt -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lgfortran -lblas -llapack -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libfreecontact.so.0 -o .libs/libfreecontact.so.0.0.0 /usr/lib/gcc/aarch64-linux-gnu/15/libgfortran.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -1764,65 +1800,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_input_xsd.hxx:646, - from freecontact_input_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_input_xsd.hxx:66: -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); | ^~~~~~~~ @@ -1853,33 +1836,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13071 | correspondance (::std::auto_ptr< correspondance_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -1895,30 +1854,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13597 | reference (::std::auto_ptr< reference_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); | ^~~~~~~~ @@ -1937,42 +1878,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3442 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14226 | dbName (::std::auto_ptr< dbName_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14304 | dbUri (::std::auto_ptr< dbUri_type > p); | ^~~~~~~~ @@ -1991,23 +1902,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact_output_xsd.hxx:645, - from freecontact_output_xsd.cxx:41: -BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1507 | sequence (::std::auto_ptr< sequence_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/xsd/cxx/tree/elements.hxx:23, - from freecontact_output_xsd.hxx:66: -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ @@ -2020,357 +1920,452 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1585 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1665 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1741 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3877 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3935 | bases (::std::auto_ptr< bases_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1817 | note (::std::auto_ptr< note_type > p); +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1893 | translationData (::std::auto_ptr< translationData_type > p); +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4414 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4566 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4796 | variantNote (::std::auto_ptr< variantNote_type > p); +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); - | ^~~~~~~~ +In file included from freecontact_input_xsd.hxx:646, + from freecontact_input_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_input_xsd.hxx:66: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2611 | note (::std::auto_ptr< note_type > p); +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3051 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3109 | len (::std::auto_ptr< len_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3287 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3366 | max (::std::auto_ptr< max_type > p); +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2380,12 +2375,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); | ^~~~~~~~ @@ -2398,15 +2387,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2422,9 +2417,15 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2440,18 +2441,24 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2470,12 +2477,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4566 | chromosome (::std::auto_ptr< chromosome_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ @@ -2494,6 +2507,108 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); | ^~~~~~~~ @@ -2524,12 +2639,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7203 | frame (::std::auto_ptr< frame_type > p); | ^~~~~~~~ @@ -2548,21 +2657,39 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 110 | sequence (::std::auto_ptr< sequence_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 140 | species (::std::auto_ptr< species_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 170 | reference (::std::auto_ptr< reference_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 200 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2578,15 +2705,15 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 230 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 260 | translationData (::std::auto_ptr< translationData_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2602,9 +2729,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 290 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2614,15 +2741,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 376 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8444 | Result (::std::auto_ptr< methodIdRef_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 420 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2638,45 +2771,39 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6703 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 444 | len (::std::auto_ptr< len_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 478 | min (::std::auto_ptr< min_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 508 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8973 | dataReference (::std::auto_ptr< dataReference_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 538 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2686,39 +2813,51 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9189 | reliability (::std::auto_ptr< reliability_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7203 | frame (::std::auto_ptr< frame_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 592 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7279 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 634 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7419 | alignment (::std::auto_ptr< alignment_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 658 | bases (::std::auto_ptr< bases_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2728,21 +2867,45 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 722 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9718 | unit (::std::auto_ptr< unit_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 782 | sequenceName (::std::auto_ptr< sequenceName_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 9794 | note (::std::auto_ptr< note_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 812 | species (::std::auto_ptr< species_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2758,21 +2921,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 872 | chromosome (::std::auto_ptr< chromosome_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2788,21 +2951,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 932 | variantAccession (::std::auto_ptr< variantAccession_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 10419 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7901 | predicted (::std::auto_ptr< predicted_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7977 | experimental (::std::auto_ptr< experimental_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 962 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2824,27 +2987,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8130 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8217 | MethodResult (::std::auto_ptr< method_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1046 | reversedDirection (::std::auto_ptr< reversedDirection_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11072 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1114 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -2854,90 +3011,48 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11206 | certainty (::std::auto_ptr< certainty_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); +BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1180 | className (::std::auto_ptr< className_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8444 | Result (::std::auto_ptr< methodIdRef_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); +BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1228 | properties (::std::auto_ptr< properties_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8602 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11465 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8818 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11544 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11620 | strand (::std::auto_ptr< strand_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); | ^~~~~~~~ @@ -2947,32 +3062,37 @@ BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); | ^~~~~~~~ +In file included from freecontact_output_xsd.hxx:645, + from freecontact_output_xsd.cxx:41: +BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1507 | sequence (::std::auto_ptr< sequence_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/xsd/cxx/tree/elements.hxx:23, + from freecontact_output_xsd.hxx:66: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1585:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1585 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1346 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8973 | dataReference (::std::auto_ptr< dataReference_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1665:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1665 | reference (::std::auto_ptr< reference_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; @@ -2980,93 +3100,87 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9113 | verdict (::std::auto_ptr< verdict_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9189 | reliability (::std::auto_ptr< reliability_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1741:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1741 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1817:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1817 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1893:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1893 | translationData (::std::auto_ptr< translationData_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1428 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1969:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1969 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3079,71 +3193,77 @@ BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12745 | samePartition (::std::auto_ptr< samePartition_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9566 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12821 | outside (::std::auto_ptr< outside_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9642 | index (::std::auto_ptr< index_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1602 | frame (::std::auto_ptr< frame_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9718 | unit (::std::auto_ptr< unit_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9794 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1632 | phase (::std::auto_ptr< phase_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1680 | alignment (::std::auto_ptr< alignment_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9974 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10032 | value (::std::auto_ptr< value_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1708 | referenceSequence (::std::auto_ptr< referenceSequence_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.hxx:2611:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2611 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; @@ -3151,54 +3271,66 @@ BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1778 | predicted (::std::auto_ptr< predicted_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10285 | pos (::std::auto_ptr< pos_type > p); +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3051 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10361 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1808 | experimental (::std::auto_ptr< experimental_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3109 | len (::std::auto_ptr< len_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10419 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1836 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13597 | reference (::std::auto_ptr< reference_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10679 | pos (::std::auto_ptr< pos_type > p); +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3287:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3287 | min (::std::auto_ptr< min_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10755 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3366:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3366 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10813 | certainty (::std::auto_ptr< certainty_type > p); +BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3442:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3442 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3208,18 +3340,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3500:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3500 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11072 | pos (::std::auto_ptr< pos_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3567:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3567 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3232,30 +3364,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11148 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11206 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1934 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); +BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 1964 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14226 | dbName (::std::auto_ptr< dbName_type > p); | ^~~~~~~~ @@ -3268,15 +3388,27 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3877:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3877 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2012 | verdict (::std::auto_ptr< verdict_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11465 | min (::std::auto_ptr< min_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:3935:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3935 | bases (::std::auto_ptr< bases_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3286,9 +3418,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11544 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2040 | dataReference (::std::auto_ptr< dataReference_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3298,27 +3430,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11620 | strand (::std::auto_ptr< strand_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2088 | verdict (::std::auto_ptr< verdict_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4110:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4110 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); | ^~~~~~~~ @@ -3328,57 +3451,84 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4186:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4186 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4262 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4338:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4338 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12003 | max (::std::auto_ptr< max_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2118 | reliability (::std::auto_ptr< reliability_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12061 | certainty (::std::auto_ptr< certainty_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4414:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4414 | species (::std::auto_ptr< species_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4566 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12377 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4644:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4644 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2206 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4796 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3394,9 +3544,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2236 | index (::std::auto_ptr< index_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3409,48 +3559,30 @@ BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15305 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2266 | unit (::std::auto_ptr< unit_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2296 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12669 | samePoint (::std::auto_ptr< samePoint_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12745 | samePartition (::std::auto_ptr< samePartition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2330 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3466,57 +3598,51 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12821 | outside (::std::auto_ptr< outside_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2354 | value (::std::auto_ptr< value_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2384 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15870 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2418 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13071 | correspondance (::std::auto_ptr< correspondance_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2448 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3526,24 +3652,24 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2472 | certainty (::std::auto_ptr< certainty_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13211 | insertion (::std::auto_ptr< insertion_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2516 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3556,6 +3682,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2546 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); | ^~~~~~~~ @@ -3568,33 +3700,45 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2570 | certainty (::std::auto_ptr< certainty_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16845 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2614 | pos (::std::auto_ptr< pos_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2644 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17130 | name (::std::auto_ptr< name_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3604,21 +3748,15 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); +BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2668 | certainty (::std::auto_ptr< certainty_type > x) | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3628,54 +3766,48 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17434 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2712 | min (::std::auto_ptr< min_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2742 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -3685,396 +3817,498 @@ BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2772 | strand (::std::auto_ptr< strand_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2796 | minCertainty (::std::auto_ptr< minCertainty_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6115:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6115 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2826 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13908 | phase (::std::auto_ptr< phase_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2870 | max (::std::auto_ptr< max_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2894 | certainty (::std::auto_ptr< certainty_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2956 | insertion (::std::auto_ptr< insertion_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14226 | dbName (::std::auto_ptr< dbName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6627:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6627 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14304 | dbUri (::std::auto_ptr< dbUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6703:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6703 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3004 | nextPoint (::std::auto_ptr< nextPoint_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14511 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6843:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6843 | occurrenceName (::std::auto_ptr< occurrenceName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); +BioXSD-1.1_xsd.hxx:6919:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6919 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:6995:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6995 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3034 | nextPartition (::std::auto_ptr< nextPartition_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3064 | samePoint (::std::auto_ptr< samePoint_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3094 | samePartition (::std::auto_ptr< samePartition_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7203 | frame (::std::auto_ptr< frame_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3124 | outside (::std::auto_ptr< outside_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +BioXSD-1.1_xsd.hxx:7279:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7279 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3162 | correspondance (::std::auto_ptr< correspondance_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15075 | accession (::std::auto_ptr< accession_type > p); +BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7419 | alignment (::std::auto_ptr< alignment_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15151 | entryUri (::std::auto_ptr< entryUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3210 | insertion (::std::auto_ptr< insertion_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3258 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15305 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3296 | reference (::std::auto_ptr< reference_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3348 | geneticCode (::std::auto_ptr< geneticCode_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15870 | accession (::std::auto_ptr< accession_type > p); +BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3378 | phase (::std::auto_ptr< phase_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3408:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3408 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7901:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7901 | predicted (::std::auto_ptr< predicted_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:7977:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7977 | experimental (::std::auto_ptr< experimental_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16028 | term (::std::auto_ptr< term_type > p); +BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3446 | dbName (::std::auto_ptr< dbName_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16207 | speciesName (::std::auto_ptr< speciesName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8130:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8130 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3476 | dbUri (::std::auto_ptr< dbUri_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8217 | MethodResult (::std::auto_ptr< method_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16538 | supersequence (::std::auto_ptr< supersequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3506 | dbVersion (::std::auto_ptr< dbVersion_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3560 | wsdl (::std::auto_ptr< wsdl_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8444:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8444 | Result (::std::auto_ptr< methodIdRef_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -16845 | variantNote (::std::auto_ptr< variantNote_type > p); +BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8602 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8678:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8678 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17130 | name (::std::auto_ptr< name_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8818:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8818 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17206 | uri (::std::auto_ptr< uri_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3590 | wsdlService (::std::auto_ptr< wsdlService_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17282 | version (::std::auto_ptr< version_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3620 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17358 | date (::std::auto_ptr< date_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3650 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8973:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8973 | dataReference (::std::auto_ptr< dataReference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17434 | wsdl (::std::auto_ptr< wsdl_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9113:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9113 | verdict (::std::auto_ptr< verdict_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3680 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9189:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9189 | reliability (::std::auto_ptr< reliability_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9212:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9212 | ExperimentalEvidence (::std::auto_ptr< dataReference_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); +BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3710 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3744 | accession (::std::auto_ptr< accession_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:110:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 110 | sequence (::std::auto_ptr< sequence_type > x) +BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3774 | entryUri (::std::auto_ptr< entryUri_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:140:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 140 | species (::std::auto_ptr< species_type > x) +BioXSD-1.1_xsd.hxx:9566:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9566 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3804 | entryVersion (::std::auto_ptr< entryVersion_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9642:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9642 | index (::std::auto_ptr< index_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:170:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 170 | reference (::std::auto_ptr< reference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9718:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9718 | unit (::std::auto_ptr< unit_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:200:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 200 | name (::std::auto_ptr< name_type > x) +BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3834 | date (::std::auto_ptr< date_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:230:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 230 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3868 | ontologyName (::std::auto_ptr< ontologyName_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:260:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 260 | translationData (::std::auto_ptr< translationData_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:290:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 290 | inlineBaseQuality (::std::auto_ptr< inlineBaseQuality_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9794:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9794 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:376:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 376 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3898 | ontologyUri (::std::auto_ptr< ontologyUri_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:420:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 420 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3928 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:444:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 444 | len (::std::auto_ptr< len_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:9974:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9974 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:478:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 478 | min (::std::auto_ptr< min_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10032:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10032 | value (::std::auto_ptr< value_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 3986 | accession (::std::auto_ptr< accession_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10108:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10108 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:508:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 508 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:538:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 538 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4016 | conceptUri (::std::auto_ptr< conceptUri_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:562:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 562 | minCertainty (::std::auto_ptr< minCertainty_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10285:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10285 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:592:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 592 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4046 | term (::std::auto_ptr< term_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:634:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 634 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10361:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10361 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10419 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:658:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 658 | bases (::std::auto_ptr< bases_type > x) +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4080 | speciesName (::std::auto_ptr< speciesName_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10679:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10679 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23645 | missing (::std::auto_ptr< missing_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10755:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10755 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:10813:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10813 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4144 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4084,57 +4318,87 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:692:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 692 | localAlignmentPosition (::std::auto_ptr< localAlignmentPosition_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4174 | supersequence (::std::auto_ptr< supersequence_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4204 | supersequenceName (::std::auto_ptr< supersequenceName_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:722:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 722 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11072:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11072 | pos (::std::auto_ptr< pos_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24042 | alignment (::std::auto_ptr< alignedSequence_type >); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11148:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11148 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:752:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 752 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:782:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 782 | sequenceName (::std::auto_ptr< sequenceName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11206:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11206 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4234 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4264 | variantAccession (::std::auto_ptr< variantAccession_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4294 | variantNote (::std::auto_ptr< variantNote_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11465:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11465 | min (::std::auto_ptr< min_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:812:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 812 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11544:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11544 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4144,9 +4408,27 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11620 | strand (::std::auto_ptr< strand_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4358 | name (::std::auto_ptr< name_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11678:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11678 | minCertainty (::std::auto_ptr< minCertainty_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4156,51 +4438,75 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:11745:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11745 | maxCertainty (::std::auto_ptr< maxCertainty_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:842:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 842 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4388 | uri (::std::auto_ptr< uri_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4418 | version (::std::auto_ptr< version_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12003 | max (::std::auto_ptr< max_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:872:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 872 | chromosome (::std::auto_ptr< chromosome_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4448 | date (::std::auto_ptr< date_type > x) + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 24810 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:902:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 902 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12061:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12061 | certainty (::std::auto_ptr< certainty_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4478 | wsdl (::std::auto_ptr< wsdl_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4210,63 +4516,93 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:932:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 932 | variantAccession (::std::auto_ptr< variantAccession_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4538 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:962:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 962 | variantNote (::std::auto_ptr< variantNote_type > x) +BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4568 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25133 | annotation (::std::auto_ptr< feature_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1046:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1046 | reversedDirection (::std::auto_ptr< reversedDirection_type > x) +BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4598 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1114:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1114 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12517:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12517 | nextPoint (::std::auto_ptr< nextPoint_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1180:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1180 | className (::std::auto_ptr< className_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 4628 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1228:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1228 | properties (::std::auto_ptr< properties_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12593 | nextPartition (::std::auto_ptr< nextPartition_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1262:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1262 | specificFeatureName (::std::auto_ptr< specificFeatureName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12669:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12669 | samePoint (::std::auto_ptr< samePoint_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -22916 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12745:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12745 | samePartition (::std::auto_ptr< samePartition_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:12821:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12821 | outside (::std::auto_ptr< outside_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13071:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13071 | correspondance (::std::auto_ptr< correspondance_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13211 | insertion (::std::auto_ptr< insertion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4276,9 +4612,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1346:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1346 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4288,12 +4624,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1398:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1398 | appliesToWholeSequence (::std::auto_ptr< appliesToWholeSequence_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); | ^~~~~~~~ @@ -4306,45 +4636,33 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1428:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1428 | position (::std::auto_ptr< position_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1476:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1476 | occurrenceName (::std::auto_ptr< occurrenceName_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1506:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1506 | occurrenceNote (::std::auto_ptr< occurrenceNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13832:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13832 | geneticCode (::std::auto_ptr< geneticCode_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1536:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1536 | featureTypeDetails (::std::auto_ptr< featureTypeDetails_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13908:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13908 | phase (::std::auto_ptr< phase_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26781 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23645 | missing (::std::auto_ptr< missing_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4360,93 +4678,81 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23787 | position (::std::auto_ptr< position_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27009 | scoreType (::std::auto_ptr< scoreType_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1602:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1602 | frame (::std::auto_ptr< frame_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14226:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14226 | dbName (::std::auto_ptr< dbName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14304:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14304 | dbUri (::std::auto_ptr< dbUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24042 | alignment (::std::auto_ptr< alignedSequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14511 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1632:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1632 | phase (::std::auto_ptr< phase_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27164 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:14739:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14739 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); +BioXSD-1.1_xsd.hxx:14815:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14815 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1680:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1680 | alignment (::std::auto_ptr< alignment_type > x) +BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5311 | relationName (::std::auto_ptr< relationName_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24428 | species (::std::auto_ptr< species_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; +BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4456,87 +4762,81 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24580 | chromosome (::std::auto_ptr< chromosome_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5439 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1708:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1708 | referenceSequence (::std::auto_ptr< referenceSequence_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5487 | missing (::std::auto_ptr< missing_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15075 | accession (::std::auto_ptr< accession_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24810 | variantNote (::std::auto_ptr< variantNote_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15151 | entryUri (::std::auto_ptr< entryUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1778 | predicted (::std::auto_ptr< predicted_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5535 | position (::std::auto_ptr< position_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15227:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15227 | entryVersion (::std::auto_ptr< entryVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -24970 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15305 | date (::std::auto_ptr< date_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1808:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1808 | experimental (::std::auto_ptr< experimental_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25133 | annotation (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28088 | annotation1 (::std::auto_ptr< feature_type >); | ^~~~~~~~ @@ -4546,29 +4846,41 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1836:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1836 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5569 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1882:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1882 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5593 | alignedSequence (::std::auto_ptr< alignedSequence_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15870 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:15946:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +15946 | conceptUri (::std::auto_ptr< conceptUri_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1934:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1934 | method (::std::auto_ptr< method_type > x) +BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5627 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16028 | term (::std::auto_ptr< term_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; @@ -4576,297 +4888,279 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5657:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5657 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:1964:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 1964 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16207 | speciesName (::std::auto_ptr< speciesName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16283:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16283 | speciesNote (::std::auto_ptr< speciesNote_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5687 | sequenceName (::std::auto_ptr< sequenceName_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2012:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2012 | verdict (::std::auto_ptr< verdict_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2040:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2040 | dataReference (::std::auto_ptr< dataReference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2088:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2088 | verdict (::std::auto_ptr< verdict_type > x) +BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5717 | species (::std::auto_ptr< species_type > x) | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2118:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2118 | reliability (::std::auto_ptr< reliability_type > x) - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25778 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16538 | supersequence (::std::auto_ptr< supersequence_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -25932 | code (::std::auto_ptr< code_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); +BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5747 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26253 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16617:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16617 | supersequenceName (::std::auto_ptr< supersequenceName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2206:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2206 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5777 | chromosome (::std::auto_ptr< chromosome_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16769:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16769 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2236:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2236 | index (::std::auto_ptr< index_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2266:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2266 | unit (::std::auto_ptr< unit_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +16845 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2296:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2296 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5807:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5807 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26781 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2330:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2330 | position (::std::auto_ptr< position_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; +BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5837 | variantAccession (::std::auto_ptr< variantAccession_type > x) | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26857 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -26933 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17130:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17130 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27009 | scoreType (::std::auto_ptr< scoreType_type > p); +BioXSD-1.1_xsd.cxx:5867:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5867 | variantNote (::std::auto_ptr< variantNote_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2354:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2354 | value (::std::auto_ptr< value_type > x) +BioXSD-1.1_xsd.hxx:17206:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17206 | uri (::std::auto_ptr< uri_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2384:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2384 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2418:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2418 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27164 | localId (::std::auto_ptr< localId_type > p); +BioXSD-1.1_xsd.hxx:17282:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17282 | version (::std::auto_ptr< version_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2448:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2448 | strand (::std::auto_ptr< strand_type > x) +BioXSD-1.1_xsd.hxx:17358:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17358 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27316 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17434:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17434 | wsdl (::std::auto_ptr< wsdl_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2472:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2472 | certainty (::std::auto_ptr< certainty_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5895 | feature (::std::auto_ptr< feature_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27468 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2516:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2516 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17510:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17510 | wsdlService (::std::auto_ptr< wsdlService_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17586:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17586 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2546:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2546 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17662:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17662 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27620 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:17738:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17738 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2570:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2570 | certainty (::std::auto_ptr< certainty_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5925 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27773 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; +BioXSD-1.1_xsd.hxx:17817:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17817 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2614:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2614 | pos (::std::auto_ptr< pos_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -27925 | feature (::std::auto_ptr< feature_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6089 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2644:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2644 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6117 | code (::std::auto_ptr< code_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2668:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2668 | certainty (::std::auto_ptr< certainty_type > x) +BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6195 | aminoacid (::std::auto_ptr< aminoacid_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28088 | annotation1 (::std::auto_ptr< feature_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6249:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6249 | note (::std::auto_ptr< note_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2712:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2712 | min (::std::auto_ptr< min_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6359:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6359 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2742:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2742 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6389 | ontology (::std::auto_ptr< ontology_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2772:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2772 | strand (::std::auto_ptr< strand_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6419 | database (::std::auto_ptr< database_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4882,21 +5176,15 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2796:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2796 | minCertainty (::std::auto_ptr< minCertainty_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2826 | maxCertainty (::std::auto_ptr< maxCertainty_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6449 | scoreType (::std::auto_ptr< scoreType_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28471 | method (::std::auto_ptr< method_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6477 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4906,45 +5194,15 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2870:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2870 | max (::std::auto_ptr< max_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28623 | ontology (::std::auto_ptr< ontology_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2894:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2894 | certainty (::std::auto_ptr< certainty_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28775 | database (::std::auto_ptr< database_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6505:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6505 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6533 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -4954,20 +5212,17 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -28927 | scoreType (::std::auto_ptr< scoreType_type > p); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ freecontact_input_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 881 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); +BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6561 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > @@ -4975,21 +5230,24 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6589 | localId (::std::auto_ptr< localId_type > x) + | ^~~~~~~~ freecontact_input_xsd.hxx:931:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 931 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ @@ -4999,21 +5257,21 @@ freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:2956:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2956 | insertion (::std::auto_ptr< insertion_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6617 | feature (::std::auto_ptr< feature_type > x) + | ^~~~~~~~ freecontact_input_xsd.hxx:996:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 996 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ @@ -5038,682 +5296,785 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3004:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3004 | nextPoint (::std::auto_ptr< nextPoint_type > x) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6647:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6647 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) + | ^~~~~~~~ freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29244 | localId (::std::auto_ptr< localId_type > p); - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3034:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3034 | nextPartition (::std::auto_ptr< nextPartition_type > x) +BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6707 | method (::std::auto_ptr< method_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6737 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6767 | ontology (::std::auto_ptr< ontology_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6797 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29415 | relationName (::std::auto_ptr< relationName_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6827 | database (::std::auto_ptr< database_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3064:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3064 | samePoint (::std::auto_ptr< samePoint_type > x) +BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6857 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6887 | scoreType (::std::auto_ptr< scoreType_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3094:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3094 | samePartition (::std::auto_ptr< samePartition_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6917 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3124:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3124 | outside (::std::auto_ptr< outside_type > x) +BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6969 | localId (::std::auto_ptr< localId_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); +BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7003 | relationName (::std::auto_ptr< relationName_type > x) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3162:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3162 | correspondance (::std::auto_ptr< correspondance_type > x) +BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7103 | localIdRef (::std::auto_ptr< localIdRef_type > x) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | flat (::std::auto_ptr< flat_type > x) + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +22916 | relationName (::std::auto_ptr< relationName_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3210:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3210 | insertion (::std::auto_ptr< insertion_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3258:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3258 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3296:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3296 | reference (::std::auto_ptr< reference_type > x) +BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23645 | missing (::std::auto_ptr< missing_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3348:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3348 | geneticCode (::std::auto_ptr< geneticCode_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23787:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23787 | position (::std::auto_ptr< position_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3378:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3378 | phase (::std::auto_ptr< phase_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:23961:34: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +23961 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3408:40: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3408 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24019:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24019 | alignedSequence (::std::auto_ptr< alignedSequence_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3446:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3446 | dbName (::std::auto_ptr< dbName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24042:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24042 | alignment (::std::auto_ptr< alignedSequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3476:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3476 | dbUri (::std::auto_ptr< dbUri_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24200:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24200 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3506:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3506 | dbVersion (::std::auto_ptr< dbVersion_type > x) +BioXSD-1.1_xsd.hxx:24276:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24276 | sequenceReference (::std::auto_ptr< sequenceReference_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24352:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24352 | sequenceName (::std::auto_ptr< sequenceName_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24428:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24428 | species (::std::auto_ptr< species_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3560:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3560 | wsdl (::std::auto_ptr< wsdl_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24504:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24504 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:67:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | flat (::std::auto_ptr< flat_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24580:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24580 | chromosome (::std::auto_ptr< chromosome_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24658:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24658 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3590:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3590 | wsdlService (::std::auto_ptr< wsdlService_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24734:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24734 | variantAccession (::std::auto_ptr< variantAccession_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24810:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24810 | variantNote (::std::auto_ptr< variantNote_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:24970:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +24970 | feature (::std::auto_ptr< feature_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25133 | annotation (::std::auto_ptr< feature_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3620:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3620 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25778 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:25932:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +25932 | code (::std::auto_ptr< code_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26122:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26122 | aminoacid (::std::auto_ptr< aminoacid_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26253:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26253 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26781 | method (::std::auto_ptr< method_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3650:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3650 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26857:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26857 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:26933:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +26933 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27009:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27009 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27164 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3680:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3680 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27316:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27316 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27468:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27468 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27620:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27620 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3710:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3710 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:27773:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27773 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3744:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3744 | accession (::std::auto_ptr< accession_type > x) +BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +27925 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3774:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3774 | entryUri (::std::auto_ptr< entryUri_type > x) +BioXSD-1.1_xsd.hxx:28001:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28001 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28088:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28088 | annotation1 (::std::auto_ptr< feature_type >); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28471 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3804:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3804 | entryVersion (::std::auto_ptr< entryVersion_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28547:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28547 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3834:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3834 | date (::std::auto_ptr< date_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28623:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28623 | ontology (::std::auto_ptr< ontology_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3868:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3868 | ontologyName (::std::auto_ptr< ontologyName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28699:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28699 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3898:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3898 | ontologyUri (::std::auto_ptr< ontologyUri_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28775 | database (::std::auto_ptr< database_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3928:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3928 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > x) +BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:3986:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 3986 | accession (::std::auto_ptr< accession_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:28927:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +28927 | scoreType (::std::auto_ptr< scoreType_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4016:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4016 | conceptUri (::std::auto_ptr< conceptUri_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29003:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29003 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4046:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4046 | term (::std::auto_ptr< term_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29244:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29244 | localId (::std::auto_ptr< localId_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4080:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4080 | speciesName (::std::auto_ptr< speciesName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29415:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29415 | relationName (::std::auto_ptr< relationName_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4110:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4110 | speciesNote (::std::auto_ptr< speciesNote_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4144:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4144 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:681:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 681 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4174:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4174 | supersequence (::std::auto_ptr< supersequence_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4204:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4204 | supersequenceName (::std::auto_ptr< supersequenceName_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:715:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 715 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4234:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4234 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4264:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4264 | variantAccession (::std::auto_ptr< variantAccession_type > x) +freecontact_output_xsd.hxx:747:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 747 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +freecontact_output_xsd.hxx:765:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 765 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4294:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4294 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4358:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4358 | name (::std::auto_ptr< name_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4388:15: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4388 | uri (::std::auto_ptr< uri_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:830:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 830 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4418:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4418 | version (::std::auto_ptr< version_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4448:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4448 | date (::std::auto_ptr< date_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4478:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4478 | wsdl (::std::auto_ptr< wsdl_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:881:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 881 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4508:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4508 | wsdlService (::std::auto_ptr< wsdlService_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:895:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 895 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4538:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4538 | wsdlPort (::std::auto_ptr< wsdlPort_type > x) - | ^~~~~~~~ +freecontact_output_xsd.hxx:912:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 912 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4568:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4568 | webserviceOperation (::std::auto_ptr< webserviceOperation_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 97 | FcAlignment (::std::auto_ptr< flat_type > flat) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4598:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4598 | webserviceVersion (::std::auto_ptr< webserviceVersion_type > x) +freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7570 | BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:4628:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 4628 | webserviceDate (::std::auto_ptr< webserviceDate_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7630 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5311:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5311 | relationName (::std::auto_ptr< relationName_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 150 | ::std::auto_ptr< flat_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5439:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5439 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > x) +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7641 | ::std::auto_ptr< sequence_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5487:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5487 | missing (::std::auto_ptr< missing_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7658 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5535:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5535 | position (::std::auto_ptr< position_type > x) +BioXSD-1.1_xsd.cxx:7669:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7669 | ::std::auto_ptr< species_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5569:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5569 | alignmentOfReference (::std::auto_ptr< alignmentOfReference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7686:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7686 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5593:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5593 | alignedSequence (::std::auto_ptr< alignedSequence_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7697:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7697 | ::std::auto_ptr< reference_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5627:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5627 | sequenceRecord (::std::auto_ptr< sequenceRecord_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7714:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7714 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5657:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5657 | sequenceReference (::std::auto_ptr< sequenceReference_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7725:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7725 | ::std::auto_ptr< name_type > r ( + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5687:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5687 | sequenceName (::std::auto_ptr< sequenceName_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5717:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5717 | species (::std::auto_ptr< species_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7742:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7742 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5747:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5747 | genomeBuild (::std::auto_ptr< genomeBuild_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5777:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5777 | chromosome (::std::auto_ptr< chromosome_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7753:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7753 | ::std::auto_ptr< note_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5807:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5807 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7770:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7770 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5837:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5837 | variantAccession (::std::auto_ptr< variantAccession_type > x) +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7781 | ::std::auto_ptr< translationData_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5867:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5867 | variantNote (::std::auto_ptr< variantNote_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5895:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5895 | feature (::std::auto_ptr< feature_type > x) +BioXSD-1.1_xsd.cxx:7798:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7798 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:5925:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5925 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7809:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7809 | ::std::auto_ptr< inlineBaseQuality_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6089:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6089 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6117:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6117 | code (::std::auto_ptr< code_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6195:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6195 | aminoacid (::std::auto_ptr< aminoacid_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6249:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6249 | note (::std::auto_ptr< note_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6359:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6359 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6389:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6389 | ontology (::std::auto_ptr< ontology_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:7880:43: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7880 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6419:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6419 | database (::std::auto_ptr< database_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6449:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6449 | scoreType (::std::auto_ptr< scoreType_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6477:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6477 | localId (::std::auto_ptr< localId_type > x) +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6505:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6505 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7929:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7929 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6533:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6533 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6561:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6561 | localId (::std::auto_ptr< localId_type > x) +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6589:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6589 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:7978:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 7978 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) + | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6617:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6617 | feature (::std::auto_ptr< feature_type > x) +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6647:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6647 | condensedReferences (::std::auto_ptr< condensedReferences_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6707:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6707 | method (::std::auto_ptr< method_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6737:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6737 | methodIdRef (::std::auto_ptr< methodIdRef_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8027:35: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8027 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6767:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6767 | ontology (::std::auto_ptr< ontology_type > x) - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6797:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6797 | ontologyIdRef (::std::auto_ptr< ontologyIdRef_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:97:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 97 | FcAlignment (::std::auto_ptr< flat_type > flat) - | ^~~~~~~~ +freecontact_input_xsd.cxx: At global scope: +freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6827:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6827 | database (::std::auto_ptr< database_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const xml_schema::properties&)': +freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6857:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6857 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:8118:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8118 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6887:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6887 | scoreType (::std::auto_ptr< scoreType_type > x) - | ^~~~~~~~ +freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6917:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6917 | scoreTypeIdRef (::std::auto_ptr< scoreTypeIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8127:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8127 | ::std::auto_ptr< alignedBy_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In member function 'void freecontact_input_xsd::FcAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -freecontact_input_xsd.cxx:139:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 139 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:8143:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8143 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:6969:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6969 | localId (::std::auto_ptr< localId_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8152:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8152 | ::std::auto_ptr< alignedSequence_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7003:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7003 | relationName (::std::auto_ptr< relationName_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8168:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8168 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7103:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7103 | localIdRef (::std::auto_ptr< localIdRef_type > x) - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8179:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8179 | ::std::auto_ptr< note_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5723,12 +6084,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:150:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 150 | ::std::auto_ptr< flat_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xml_schema::flags, const xml_schema::properties&)': freecontact_output_xsd.cxx:85:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 85 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( @@ -5743,13 +6098,10 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:212:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 212 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8924 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': freecontact_output_xsd.cxx:107:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 107 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( @@ -5757,10 +6109,19 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:112:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 112 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8935:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8935 | ::std::auto_ptr< localAlignmentPosition_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5768,6 +6129,18 @@ freecontact_output_xsd.cxx:125:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 125 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8952:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8952 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8963:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8963 | ::std::auto_ptr< sequenceRecord_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5778,9 +6151,27 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8980:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8980 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx:143:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 143 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:8991:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8991 | ::std::auto_ptr< sequenceReference_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9008:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9008 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5790,34 +6181,63 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9019:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9019 | ::std::auto_ptr< sequenceName_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx:167:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 167 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9036:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9036 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx:181:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 181 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9047:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9047 | ::std::auto_ptr< species_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9064:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9064 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ freecontact_output_xsd.cxx:196:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 196 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9075:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9075 | ::std::auto_ptr< genomeBuild_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx:207:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 207 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:229:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 229 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9092:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9092 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5828,10 +6248,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:234:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 234 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9103:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9103 | ::std::auto_ptr< chromosome_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5842,6 +6261,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9120:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9120 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx: In function 'std::auto_ptr freecontact_output_xsd::contactMap(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': freecontact_output_xsd.cxx:238:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 238 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( @@ -5849,10 +6274,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:251:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 251 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9131:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9131 | ::std::auto_ptr< subsequencePosition_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5863,10 +6287,9 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:256:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 256 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9148:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9148 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5874,13 +6297,12 @@ freecontact_output_xsd.cxx:256:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 256 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9159:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9159 | ::std::auto_ptr< variantAccession_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const std::string&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:269:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 269 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5888,13 +6310,12 @@ freecontact_output_xsd.cxx:261:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 261 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9176:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9176 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:274:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 274 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5902,12 +6323,24 @@ freecontact_output_xsd.cxx:271:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 271 | return ::std::auto_ptr< ::BioXSD::FeatureRecord > ( | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9187:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9187 | ::std::auto_ptr< variantNote_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:287:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 287 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9204:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9213:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9213 | ::std::auto_ptr< gap_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -5917,114 +6350,112 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:301:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 301 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9229:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9229 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:311:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 311 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9238:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9238 | ::std::auto_ptr< insert_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:325:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 325 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9254:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9254 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:340:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 340 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9263:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9263 | ::std::auto_ptr< frameshift_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:351:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 351 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9279:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9279 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:364:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 364 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9290:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9290 | ::std::auto_ptr< reversedDirection_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:369:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 369 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9307:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9307 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xml_schema::error_handler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:382:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 382 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9316:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9316 | ::std::auto_ptr< sequenceScore_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:387:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 387 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9610 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xercesc_3_2::InputSource&, xercesc_3_2::DOMErrorHandler&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:400:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 400 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9621:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9621 | ::std::auto_ptr< name_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:405:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 405 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(const xercesc_3_2::DOMDocument&, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:415:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 415 | return ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9647:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9647 | ::std::auto_ptr< equalConcept_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:424:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 424 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9663:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9663 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:433:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 433 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9672:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9672 | ::std::auto_ptr< equalAlias_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: At global scope: -freecontact_input_xsd.cxx:451:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 451 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9688:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9688 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx: In function 'std::auto_ptr freecontact_input_xsd::alignment(xsd::cxx::xml::dom::auto_ptr, xml_schema::flags, const xml_schema::properties&)': -freecontact_input_xsd.cxx:473:12: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 473 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9699:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9699 | ::std::auto_ptr< className_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.cxx:483:14: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 483 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9716:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9716 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9725:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9725 | ::std::auto_ptr< classConcept_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6034,6 +6465,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9741:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9741 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9752:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9752 | ::std::auto_ptr< properties_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.cxx: At global scope: freecontact_output_xsd.cxx:307:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 307 | ::std::auto_ptr< ::BioXSD::FeatureRecord > @@ -6054,6 +6497,472 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9866 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9877 | ::std::auto_ptr< specificFeatureName_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9894:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9894 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9903:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9903 | ::std::auto_ptr< specificFeatureConcept_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9919:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9919 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9928:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9928 | ::std::auto_ptr< specificFeatureAlias_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9944 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9953 | ::std::auto_ptr< databaseEntry_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9969 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9980 | ::std::auto_ptr< note_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 9998 | ::std::auto_ptr< association_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10123 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10134 | ::std::auto_ptr< appliesToWholeSequence_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10151 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10162 | ::std::auto_ptr< position_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10179 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10188 | ::std::auto_ptr< occurrenceEntryReference_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10215 | ::std::auto_ptr< occurrenceName_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10232 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10243 | ::std::auto_ptr< occurrenceNote_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10260 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10271 | ::std::auto_ptr< featureTypeDetails_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10288 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10297 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10313:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10313 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10322:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10322 | ::std::auto_ptr< evidence_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10339 | ::std::auto_ptr< frame_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10352:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10352 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10363:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10363 | ::std::auto_ptr< phase_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10381:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10381 | ::std::auto_ptr< variation_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10392 | ::std::auto_ptr< alignment_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10460 | FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10509 | ::std::auto_ptr< referenceSequence_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10523 | ::std::auto_ptr< annotation_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10534 | ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10633 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10644:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10644 | ::std::auto_ptr< predicted_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10661 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10672 | ::std::auto_ptr< experimental_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10733 | MethodResult (::std::auto_ptr< method_type > method) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10779 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10792:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10792 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10801:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10801 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10868 | Result (::std::auto_ptr< methodIdRef_type > methodIdRef) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10913 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10924:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10924 | ::std::auto_ptr< methodIdRef_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10941:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10941 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:10950:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +10950 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11060 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11071 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11088 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11099:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11099 | ::std::auto_ptr< methodIdRef_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11116:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11116 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11125:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11125 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11141 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11152 | ::std::auto_ptr< verdict_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11217 | ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11268:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11268 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11279:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11279 | ::std::auto_ptr< dataReference_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11296:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11296 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11305 | ::std::auto_ptr< citation_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11321:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11321 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11332:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11332 | ::std::auto_ptr< verdict_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11349:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11349 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11360:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11360 | ::std::auto_ptr< reliability_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11482:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11482 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11491:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11491 | ::std::auto_ptr< concept_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11507:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11507 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11516:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11516 | ::std::auto_ptr< method_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11532:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11532 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11541:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11541 | ::std::auto_ptr< methodIdRef_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:11679:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11679 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:11690:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +11690 | ::std::auto_ptr< position_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +In file included from freecontact.cpp:25: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> + | ^ +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + | ^ In file included from freecontact_input_xsd.hxx:646, from _write_bioxsd.cpp:20: BioXSD-1.1_xsd.hxx:1507:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] @@ -6107,24 +7016,31 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7570:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7570 | BiosequenceRecord (::std::auto_ptr< sequence_type > sequence) - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:1992:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1992 | BiosequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:2105:45: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2105 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12613 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12622:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12622 | ::std::auto_ptr< point_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:2186:44: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2186 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ @@ -6134,19 +7050,48 @@ BioXSD-1.1_xsd.hxx:2267:38: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 2267 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type >); | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:7630:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7630 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:2348:37: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 2348 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type >); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12649:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12649 | ::std::auto_ptr< insertion_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12666:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12666 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12675:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12675 | ::std::auto_ptr< segment_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12691:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12691 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12702:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12702 | ::std::auto_ptr< nextPoint_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6156,6 +7101,30 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12719:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12719 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12730:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12730 | ::std::auto_ptr< nextPartition_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12747:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12747 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12758 | ::std::auto_ptr< samePoint_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:3051:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3051 | pos (::std::auto_ptr< pos_type > p); | ^~~~~~~~ @@ -6165,6 +7134,30 @@ BioXSD-1.1_xsd.hxx:3109:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 3109 | len (::std::auto_ptr< len_type > p); | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12775:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12775 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12786 | ::std::auto_ptr< samePartition_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12803 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12814 | ::std::auto_ptr< outside_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6240,12 +7233,25 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12970 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4490:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4490 | genomeBuild (::std::auto_ptr< genomeBuild_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12981 | ::std::auto_ptr< correspondance_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4566:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4566 | chromosome (::std::auto_ptr< chromosome_type > p); | ^~~~~~~~ @@ -6258,93 +7264,106 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:12998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +12998 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4720:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4720 | variantAccession (::std::auto_ptr< variantAccession_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13007 | ::std::auto_ptr< point_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:4796:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 4796 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13023:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13023 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7641:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7641 | ::std::auto_ptr< sequence_type > r ( +BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13034 | ::std::auto_ptr< insertion_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7658:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7658 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:13051:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13051 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5589 | name (::std::auto_ptr< name_type > p); +BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13060 | ::std::auto_ptr< segment_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7669:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7669 | ::std::auto_ptr< species_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7686:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7686 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13087 | ::std::auto_ptr< explicitSequenceReference_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5798 | className (::std::auto_ptr< className_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5064:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5064 | reversedDirection (::std::auto_ptr< reversedDirection_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7697:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7697 | ::std::auto_ptr< reference_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 5938 | properties (::std::auto_ptr< properties_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5589:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5589 | name (::std::auto_ptr< name_type > p); + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13242 | ::std::auto_ptr< reference_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7714:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7714 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7725:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7725 | ::std::auto_ptr< name_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13260 | ::std::auto_ptr< codon_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7742:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7742 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5798:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5798 | className (::std::auto_ptr< className_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7753:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7753 | ::std::auto_ptr< note_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:5938:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 5938 | properties (::std::auto_ptr< properties_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6354,32 +7373,45 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7770:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7770 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7781 | ::std::auto_ptr< translationData_type > r ( +BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 6385 | note (::std::auto_ptr< note_type > p); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13365 | ::std::auto_ptr< geneticCode_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7798:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7798 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13382 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:6385:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 6385 | note (::std::auto_ptr< note_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13393 | ::std::auto_ptr< phase_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7809:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7809 | ::std::auto_ptr< inlineBaseQuality_type > r ( +BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13421 | ::std::auto_ptr< reversedTranslationDirection_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; @@ -6414,13 +7446,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:7880:43: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7880 | GeneralNucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7203:19: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7203 | frame (::std::auto_ptr< frame_type > p); | ^~~~~~~~ @@ -6433,36 +7458,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7929:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7929 | GeneralAminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7419:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7419 | alignment (::std::auto_ptr< alignment_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:7978:36: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 7978 | NucleotideSequenceRecord (::std::auto_ptr< sequence_type > sequence) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7588:31: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7588 | referenceSequence (::std::auto_ptr< referenceSequence_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8027:35: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8027 | AminoacidSequenceRecord (::std::auto_ptr< sequence_type > sequence) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:7742:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 7742 | FeatureRecord (::std::auto_ptr< referenceSequence_type >); | ^~~~~~~~ @@ -6481,10 +7488,20 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::BiosequenceAlignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:8118:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8118 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +freecontact.cpp: In function 'int main(int, char**)': +freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 165 | auto_ptr ali_ifs_p; + | ^~~~~~~~ +In file included from /usr/include/c++/15/memory:80, + from /usr/include/boost/function/function_base.hpp:33, + from /usr/include/boost/function/detail/prologue.hpp:18, + from /usr/include/boost/function/function_template.hpp:13, + from /usr/include/boost/function/detail/maybe_include.hpp:22, + from /usr/include/boost/function/function1.hpp:11, + from /usr/include/boost/program_options/value_semantic.hpp:13, + from /usr/include/boost/program_options/options_description.hpp:13, + from /usr/include/boost/program_options.hpp:15, + from freecontact.cpp:17: /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6494,27 +7511,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8127:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8127 | ::std::auto_ptr< alignedBy_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8217:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8217 | MethodResult (::std::auto_ptr< method_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8143:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8143 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); +freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:8357:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 8357 | methodIdRef (::std::auto_ptr< methodIdRef_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6524,24 +7535,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8152:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8152 | ::std::auto_ptr< alignedSequence_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8168:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8168 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8179:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8179 | ::std::auto_ptr< note_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:8602:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 8602 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ @@ -6710,6 +7703,25 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14195 | ::std::auto_ptr< subsequencePosition_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14212 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12003:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12003 | max (::std::auto_ptr< max_type > p); | ^~~~~~~~ @@ -6722,6 +7734,24 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14223 | ::std::auto_ptr< supersequence_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14240 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14251 | ::std::auto_ptr< supersequenceName_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:12377:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 12377 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ @@ -6764,34 +7794,46 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14419 | ::std::auto_ptr< categoryConcept_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.hxx:13211:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13211 | insertion (::std::auto_ptr< insertion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14435 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13597 | reference (::std::auto_ptr< reference_type > p); - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +14444 | ::std::auto_ptr< citation_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::AlignedBiosequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:8924:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8924 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13351:39: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13351 | explicitSequenceReference (::std::auto_ptr< explicitSequenceReference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8935:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8935 | ::std::auto_ptr< localAlignmentPosition_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.hxx:13597:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +13597 | reference (::std::auto_ptr< reference_type > p); + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6810,30 +7852,6 @@ BioXSD-1.1_xsd.hxx:13984:42: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 13984 | reversedTranslationDirection (::std::auto_ptr< reversedTranslationDirection_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8952:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8952 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8963:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8963 | ::std::auto_ptr< sequenceRecord_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8980:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8980 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:8991:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 8991 | ::std::auto_ptr< sequenceReference_type > r ( - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -6849,42 +7867,24 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9008:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9008 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14380:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14380 | dbVersion (::std::auto_ptr< dbVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9019:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9019 | ::std::auto_ptr< sequenceName_type > r ( - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14511:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14511 | wsdl (::std::auto_ptr< wsdl_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14587:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14587 | wsdlService (::std::auto_ptr< wsdlService_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9036:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9036 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14663:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14663 | wsdlPort (::std::auto_ptr< wsdlPort_type > p); | ^~~~~~~~ @@ -6903,72 +7903,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9047:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9047 | ::std::auto_ptr< species_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:14894:28: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 14894 | webserviceDate (::std::auto_ptr< webserviceDate_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9064:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9064 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9075:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9075 | ::std::auto_ptr< genomeBuild_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9092:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9092 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9103:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9103 | ::std::auto_ptr< chromosome_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9120:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9120 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9131:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9131 | ::std::auto_ptr< subsequencePosition_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9148:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9148 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9159:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9159 | ::std::auto_ptr< variantAccession_type > r ( - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15075:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15075 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15151:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15151 | entryUri (::std::auto_ptr< entryUri_type > p); | ^~~~~~~~ @@ -6981,66 +7927,30 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9176:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9176 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15305 | date (::std::auto_ptr< date_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9187:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9187 | ::std::auto_ptr< variantNote_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9204:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15481:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15481 | ontologyName (::std::auto_ptr< ontologyName_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9213:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9213 | ::std::auto_ptr< gap_type > r ( - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15559:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15559 | ontologyUri (::std::auto_ptr< ontologyUri_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15635:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15635 | ontologyVersion (::std::auto_ptr< ontologyVersion_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9229:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9229 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9238:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9238 | ::std::auto_ptr< insert_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:15870:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 15870 | accession (::std::auto_ptr< accession_type > p); | ^~~~~~~~ @@ -7053,24 +7963,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9254:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9254 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16028:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16028 | term (::std::auto_ptr< term_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9263:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9263 | ::std::auto_ptr< frameshift_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16207:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16207 | speciesName (::std::auto_ptr< speciesName_type > p); | ^~~~~~~~ @@ -7083,24 +7981,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9279:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9279 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16459:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16459 | subsequencePosition (::std::auto_ptr< subsequencePosition_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9290:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9290 | ::std::auto_ptr< reversedDirection_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16538:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16538 | supersequence (::std::auto_ptr< supersequence_type > p); | ^~~~~~~~ @@ -7113,12 +7999,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9307:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9307 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16693:29: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16693 | sequenceVersion (::std::auto_ptr< sequenceVersion_type > p); | ^~~~~~~~ @@ -7131,12 +8011,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9316:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9316 | ::std::auto_ptr< sequenceScore_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:16845:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 16845 | variantNote (::std::auto_ptr< variantNote_type > p); | ^~~~~~~~ @@ -7203,158 +8077,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:9610:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9610 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9621:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9621 | ::std::auto_ptr< name_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9647:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9647 | ::std::auto_ptr< equalConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9663:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9663 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9672:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9672 | ::std::auto_ptr< equalAlias_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9688:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9688 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9699:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9699 | ::std::auto_ptr< className_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9716:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9716 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9725:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9725 | ::std::auto_ptr< classConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9741:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9741 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9752:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9752 | ::std::auto_ptr< properties_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureTypeDetails::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:9866:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9866 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9877:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9877 | ::std::auto_ptr< specificFeatureName_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9894:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9894 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:22916:26: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 22916 | relationName (::std::auto_ptr< relationName_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9903:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9903 | ::std::auto_ptr< specificFeatureConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9919:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9919 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9928:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9928 | ::std::auto_ptr< specificFeatureAlias_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9944:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9944 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9953:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9953 | ::std::auto_ptr< databaseEntry_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9969:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9969 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9980:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9980 | ::std::auto_ptr< note_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23505:30: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23505 | canonicalVariant (::std::auto_ptr< canonicalVariant_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:9998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 9998 | ::std::auto_ptr< association_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:23645:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 23645 | missing (::std::auto_ptr< missing_type > p); | ^~~~~~~~ @@ -7445,118 +8179,21 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureOccurrenceData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10123:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10123 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25046:33: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25046 | condensedReferences (::std::auto_ptr< condensedReferences_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10134:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10134 | ::std::auto_ptr< appliesToWholeSequence_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25133:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25133 | annotation (::std::auto_ptr< feature_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10151:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10151 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10162:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10162 | ::std::auto_ptr< position_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10179:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10179 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10188:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10188 | ::std::auto_ptr< occurrenceEntryReference_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10204:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10204 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10215:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10215 | ::std::auto_ptr< occurrenceName_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10232:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10232 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10243:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10243 | ::std::auto_ptr< occurrenceNote_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10260 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10271:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10271 | ::std::auto_ptr< featureTypeDetails_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10288:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10288 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10297:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10297 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:25778:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 25778 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10313:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10313 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10322:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10322 | ::std::auto_ptr< evidence_type > r ( - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -7578,30 +8215,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10339:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10339 | ::std::auto_ptr< frame_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10352:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10352 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10363:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10363 | ::std::auto_ptr< phase_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10381:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10381 | ::std::auto_ptr< variation_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:26781:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 26781 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ @@ -7626,12 +8239,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10392:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10392 | ::std::auto_ptr< alignment_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27164:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27164 | localId (::std::auto_ptr< localId_type > p); | ^~~~~~~~ @@ -7662,13 +8269,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10460:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10460 | FeatureRecord (::std::auto_ptr< referenceSequence_type > referenceSequence) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:27925:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 27925 | feature (::std::auto_ptr< feature_type > p); | ^~~~~~~~ @@ -7687,19 +8287,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::FeatureRecord::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10509:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10509 | ::std::auto_ptr< referenceSequence_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10523:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10523 | ::std::auto_ptr< annotation_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28471:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28471 | method (::std::auto_ptr< method_type > p); | ^~~~~~~~ @@ -7724,18 +8311,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10534:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10534 | ::std::auto_ptr< blockWithOccurrenceReferences_type > r ( - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28775:22: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28775 | database (::std::auto_ptr< database_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:28851:27: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 28851 | databaseIdRef (::std::auto_ptr< databaseIdRef_type > p); | ^~~~~~~~ @@ -7766,116 +8347,52 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Evidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10633:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10633 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10644:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10644 | ::std::auto_ptr< predicted_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.hxx:29826:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 29826 | localIdRef (::std::auto_ptr< localIdRef_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10661:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10661 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10672:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10672 | ::std::auto_ptr< experimental_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10733:24: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10733 | MethodResult (::std::auto_ptr< method_type > method) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::MethodResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10779:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10779 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10792:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10792 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10801:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10801 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:10868:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10868 | Result (::std::auto_ptr< methodIdRef_type > methodIdRef) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Result::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:10913:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10913 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ freecontact_input_xsd.hxx:723:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 723 | flat (::std::auto_ptr< flat_type > p); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10924:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10924 | ::std::auto_ptr< methodIdRef_type > r ( - | ^~~~~~~~ freecontact_input_xsd.hxx:746:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 746 | FcAlignment (::std::auto_ptr< flat_type >); | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10941:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10941 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17632 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:10950:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -10950 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17643 | ::std::auto_ptr< relationName_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 847 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > +freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_input_xsd.hxx:863:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 863 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17660:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17660 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -7885,12 +8402,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17669:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17669 | ::std::auto_ptr< relationConcept_type > r ( + | ^~~~~~~~ freecontact_input_xsd.hxx:897:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 897 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:913:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 913 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ @@ -7903,12 +8426,24 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17685:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17685 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:951:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 951 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17694:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17694 | ::std::auto_ptr< associatedConcept_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:973:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 973 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ @@ -7921,18 +8456,30 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17710:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17710 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:1013:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1013 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17719:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17719 | ::std::auto_ptr< associatedDatabaseEntry_type > r ( + | ^~~~~~~~ freecontact_input_xsd.hxx:1029:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1029 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:1047:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1047 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ @@ -7945,96 +8492,101 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17735:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17735 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_input_xsd.hxx:1078:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 1078 | ::std::auto_ptr< ::freecontact_input_xsd::FcAlignment > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::PredictionResult::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11060:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11060 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:17744:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17744 | ::std::auto_ptr< associatedDatabase_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17760:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17760 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11071:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11071 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17769 | ::std::auto_ptr< associatedFeature_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11088:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11088 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17927 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11099:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11099 | ::std::auto_ptr< methodIdRef_type > r ( +BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17938 | ::std::auto_ptr< canonicalVariant_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11116:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11116 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17955 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11125:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11125 | ::std::auto_ptr< score_type > r ( +BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17964 | ::std::auto_ptr< variant_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11141:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11141 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:17980:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17980 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11152:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11152 | ::std::auto_ptr< verdict_type > r ( +BioXSD-1.1_xsd.cxx:17991:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +17991 | ::std::auto_ptr< missing_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:11217:32: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11217 | ExperimentalEvidence (::std::auto_ptr< dataReference_type > dataReference) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ExperimentalEvidence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11268:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11268 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:18008:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18008 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11279:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11279 | ::std::auto_ptr< dataReference_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18017:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18017 | ::std::auto_ptr< score_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11296:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11296 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +BioXSD-1.1_xsd.cxx:18033:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18033 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11305:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11305 | ::std::auto_ptr< citation_type > r ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18044:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18044 | ::std::auto_ptr< position_type > r ( + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11321:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11321 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: At global scope: +BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18102 | alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) + | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -8045,12 +8597,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11332:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11332 | ::std::auto_ptr< verdict_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ freecontact_output_xsd.hxx:697:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 697 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ @@ -8063,15 +8609,16 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11349:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11349 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( +freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > + | ^~~~~~~~ +BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': +BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18148 | ::std::auto_ptr< alignmentOfReference_type > r ( | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -freecontact_output_xsd.hxx:731:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 731 | ::std::auto_ptr< ::BioXSD::FeatureRecord > - | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ @@ -8087,18 +8634,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11360:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11360 | ::std::auto_ptr< reliability_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ freecontact_output_xsd.hxx:785:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 785 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18161:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18161 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.hxx:807:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 807 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ @@ -8111,6 +8658,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +BioXSD-1.1_xsd.cxx:18172:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] +18172 | ::std::auto_ptr< alignedSequence_type > r ( + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ freecontact_output_xsd.hxx:847:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 847 | ::std::auto_ptr< ::BioXSD::FeatureRecord > | ^~~~~~~~ @@ -8141,716 +8694,6 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -In file included from freecontact.cpp:25: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> - | ^ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::ScoreType::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11482:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11482 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11491:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11491 | ::std::auto_ptr< concept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - | ^ -BioXSD-1.1_xsd.cxx:11507:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11507 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11516:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11516 | ::std::auto_ptr< method_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11532:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11532 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11541:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11541 | ::std::auto_ptr< methodIdRef_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Score::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:11679:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11679 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:11690:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -11690 | ::std::auto_ptr< position_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:12613:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12613 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12622:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12622 | ::std::auto_ptr< point_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12638:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12638 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12649:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12649 | ::std::auto_ptr< insertion_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12666:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12666 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12675:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12675 | ::std::auto_ptr< segment_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12691:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12691 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12702:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12702 | ::std::auto_ptr< nextPoint_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12719:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12719 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12730:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12730 | ::std::auto_ptr< nextPartition_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12747:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12747 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12758:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12758 | ::std::auto_ptr< samePoint_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -freecontact.cpp: In function 'int main(int, char**)': -freecontact.cpp:165:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 165 | auto_ptr ali_ifs_p; - | ^~~~~~~~ -In file included from /usr/include/c++/15/memory:80, - from /usr/include/boost/function/function_base.hpp:33, - from /usr/include/boost/function/detail/prologue.hpp:18, - from /usr/include/boost/function/function_template.hpp:13, - from /usr/include/boost/function/detail/maybe_include.hpp:22, - from /usr/include/boost/function/function1.hpp:11, - from /usr/include/boost/program_options/value_semantic.hpp:13, - from /usr/include/boost/program_options/options_description.hpp:13, - from /usr/include/boost/program_options.hpp:15, - from freecontact.cpp:17: -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12775:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12775 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12786:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12786 | ::std::auto_ptr< samePartition_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12803:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12803 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -freecontact.cpp:169:25: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 169 | ali_ifs_p = auto_ptr(new std::ifstream(vm["ali"].as().c_str())); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12814:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12814 | ::std::auto_ptr< outside_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -In file included from _write_bioxsd.cpp:22: -../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> - | ^ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneralOutsideSequencePosition::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:12970:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12970 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12981:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12981 | ::std::auto_ptr< correspondance_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:12998:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -12998 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13007:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13007 | ::std::auto_ptr< point_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': -../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] - 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) - | ^ -BioXSD-1.1_xsd.cxx:13023:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13023 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13034:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13034 | ::std::auto_ptr< insertion_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13051:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13051 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13060:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13060 | ::std::auto_ptr< segment_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13076:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13076 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13087:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13087 | ::std::auto_ptr< explicitSequenceReference_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::GeneticCode::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13231:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13231 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13242:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13242 | ::std::auto_ptr< reference_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13260:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13260 | ::std::auto_ptr< codon_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::TranslationData::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:13354:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13354 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13365:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13365 | ::std::auto_ptr< geneticCode_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13382:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13382 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13393:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13393 | ::std::auto_ptr< phase_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:13421:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -13421 | ::std::auto_ptr< reversedTranslationDirection_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: At global scope: -_write_bioxsd.cpp:30:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 30 | auto_ptr _get_bxScore(const fc::contact_t& __ct, const std::string& __scid); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: In function 'std::string _xml_flatali(std::istream&, bool)': -_write_bioxsd.cpp:38:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 38 | auto_ptr xml( fix::alignment(__is) ); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: In function 'void _write_bioxsd(const freecontact::ali_t&, const resn_mapper_t&, const std::map, std::vector >&, bool)': -_write_bioxsd.cpp:53:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 53 | auto_ptr seqSeg_p(new BioXSD::SequenceSegment()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 56 | auto_ptr seqPos_p(new BioXSD::SequencePosition()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:59:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 59 | auto_ptr seqRef_p(new BioXSD::SequenceReference()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:63:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 63 | auto_ptr seqRec_p( new BioXSD::GeneralAminoacidSequenceRecord( BioXSD::GeneralAminoacidSequence( ucq ))); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 67 | auto_ptr refSeq_p(new BioXSD::referenceSequence()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 73 | auto_ptr metCatCon_p(new BioXSD::SemanticConcept()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:79:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 79 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:82:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 82 | auto_ptr method_p(new BioXSD::method1("freecontact", "M#fc")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:86:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 86 | auto_ptr sc_l1_p(new BioXSD::scoreType("S#l1")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 88 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:94:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 94 | auto_ptr method_p(new BioXSD::Method("l1-norm")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:100:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 100 | auto_ptr sc_MI_p(new BioXSD::scoreType("S#MI")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:102:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 102 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:108:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 108 | auto_ptr method_p(new BioXSD::Method("Mutual information")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 114 | auto_ptr sc_fr_p(new BioXSD::scoreType("S#fr")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:116:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 116 | auto_ptr metCit_p(new BioXSD::EntryReference()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:122:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 122 | auto_ptr method_p(new BioXSD::Method("Frobenius norm")); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 128 | auto_ptr featCon_p(new BioXSD::SemanticConcept()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:135:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 135 | auto_ptr feat_p(new BioXSD::FeatureType()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:139:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 139 | auto_ptr cref_p(new BioXSD::condensedReferences1()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:142:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 142 | auto_ptr ann_p(new BioXSD::annotation1(feat_p)); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::SequenceReference::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14184:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14184 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14195:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14195 | ::std::auto_ptr< subsequencePosition_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14212:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14212 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14223:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14223 | ::std::auto_ptr< supersequence_type > r ( - | ^~~~~~~~ -_write_bioxsd.cpp:156:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 156 | auto_ptr pt1_p(new BioXSD::SequencePoint()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14240:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14240 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14251:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14251 | ::std::auto_ptr< supersequenceName_type > r ( - | ^~~~~~~~ -_write_bioxsd.cpp:158:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 158 | auto_ptr pt2_p(new BioXSD::SequencePoint()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:161:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 161 | auto_ptr pos_p(new BioXSD::SequencePosition()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:165:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 165 | auto_ptr occ_p(new BioXSD::occurrence()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp:177:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 177 | auto_ptr occRef_p(new BioXSD::blockWithOccurrenceReferences()); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: At global scope: -_write_bioxsd.cpp:199:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 199 | auto_ptr _get_bxScore( const fc::contact_t& __ct, const std::string& __scid ) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -_write_bioxsd.cpp: In function 'std::auto_ptr _get_bxScore(const freecontact::contact_t&, const std::string&)': -_write_bioxsd.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] - 201 | auto_ptr MI_score_p(new BioXSD::Score( bo::str(bo::format("%g") % __ct.score) )); - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::Method::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:14410:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14410 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14419:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14419 | ::std::auto_ptr< categoryConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14435:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14435 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:14444:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -14444 | ::std::auto_ptr< citation_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:17632:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17632 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17643:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17643 | ::std::auto_ptr< relationName_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17660:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17660 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17669:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17669 | ::std::auto_ptr< relationConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17685:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17685 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17694:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17694 | ::std::auto_ptr< associatedConcept_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17710:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17710 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17719:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17719 | ::std::auto_ptr< associatedDatabaseEntry_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17735:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17735 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17744:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17744 | ::std::auto_ptr< associatedDatabase_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17760:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17760 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17769:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17769 | ::std::auto_ptr< associatedFeature_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::variation::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:17927:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17927 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17938:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17938 | ::std::auto_ptr< canonicalVariant_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17955:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17955 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17964:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17964 | ::std::auto_ptr< variant_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17980:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17980 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:17991:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -17991 | ::std::auto_ptr< missing_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18008:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18008 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18017:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18017 | ::std::auto_ptr< score_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18033:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18033 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18044:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18044 | ::std::auto_ptr< position_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: At global scope: -BioXSD-1.1_xsd.cxx:18102:21: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18102 | alignment (::std::auto_ptr< alignedSequence_type > alignedSequence) - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::alignment::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': -BioXSD-1.1_xsd.cxx:18148:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18148 | ::std::auto_ptr< alignmentOfReference_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18161:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18161 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ -BioXSD-1.1_xsd.cxx:18172:20: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] -18172 | ::std::auto_ptr< alignedSequence_type > r ( - | ^~~~~~~~ -/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here - 58 | template class auto_ptr; - | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::referenceSequence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:18292:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 18292 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -9133,6 +8976,14 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +In file included from _write_bioxsd.cpp:22: +../lib/freecontact.h:69:54: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + 69 | class LIBFREEC_API ali_t : public std::vector<__m128i> + | ^ +../lib/freecontact.h: In constructor 'freecontact::ali_t::ali_t(uint16_t)': +../lib/freecontact.h:80:79: warning: ignoring attributes on template argument 'freecontact::__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] + 80 | ali_t( const uint16_t __alilen = 0 ) : std::vector<__m128i>(), seqcnt(0), alilen(__alilen), alilen16(( alilen-1 )/16 + 1), alilenpad( 16 * alilen16 ) + | ^ BioXSD-1.1_xsd.cxx: At global scope: BioXSD-1.1_xsd.cxx:19944:23: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 19944 | annotation1 (::std::auto_ptr< feature_type > feature) @@ -9262,6 +9113,20 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp: At global scope: +_write_bioxsd.cpp:30:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 30 | auto_ptr _get_bxScore(const fc::contact_t& __ct, const std::string& __scid); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp: In function 'std::string _xml_flatali(std::istream&, bool)': +_write_bioxsd.cpp:38:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 38 | auto_ptr xml( fix::alignment(__is) ); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::occurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:20598:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 20598 | ::std::auto_ptr< association_type > r ( @@ -9269,6 +9134,19 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp: In function 'void _write_bioxsd(const freecontact::ali_t&, const resn_mapper_t&, const std::map, std::vector >&, bool)': +_write_bioxsd.cpp:53:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 53 | auto_ptr seqSeg_p(new BioXSD::SequenceSegment()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:56:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 56 | auto_ptr seqPos_p(new BioXSD::SequencePosition()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::association1::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:20702:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 20702 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -9282,6 +9160,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:59:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 59 | auto_ptr seqRef_p(new BioXSD::SequenceReference()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:20730:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 20730 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( | ^~~~~~~~ @@ -9300,6 +9184,12 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:63:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 63 | auto_ptr seqRec_p( new BioXSD::GeneralAminoacidSequenceRecord( BioXSD::GeneralAminoacidSequence( ucq ))); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx:20764:18: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 20764 | ::std::auto_ptr< relationConceptIdRef_type > r ( | ^~~~~~~~ @@ -9312,6 +9202,18 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ +_write_bioxsd.cpp:67:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 67 | auto_ptr refSeq_p(new BioXSD::referenceSequence()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:73:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 73 | auto_ptr metCatCon_p(new BioXSD::SemanticConcept()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ BioXSD-1.1_xsd.cxx: In member function 'void BioXSD::associatedFeatureOccurrence::parse(xsd::cxx::xml::dom::parser&, xml_schema::flags)': BioXSD-1.1_xsd.cxx:20868:16: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 20868 | ::std::auto_ptr< ::xsd::cxx::tree::type > tmp ( @@ -9325,7 +9227,141 @@ /usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here 58 | template class auto_ptr; | ^~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la +_write_bioxsd.cpp:79:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 79 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:82:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 82 | auto_ptr method_p(new BioXSD::method1("freecontact", "M#fc")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:86:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 86 | auto_ptr sc_l1_p(new BioXSD::scoreType("S#l1")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:88:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 88 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:94:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 94 | auto_ptr method_p(new BioXSD::Method("l1-norm")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:100:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 100 | auto_ptr sc_MI_p(new BioXSD::scoreType("S#MI")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:102:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 102 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:108:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 108 | auto_ptr method_p(new BioXSD::Method("Mutual information")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:114:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 114 | auto_ptr sc_fr_p(new BioXSD::scoreType("S#fr")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:116:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 116 | auto_ptr metCit_p(new BioXSD::EntryReference()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:122:9: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 122 | auto_ptr method_p(new BioXSD::Method("Frobenius norm")); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:128:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 128 | auto_ptr featCon_p(new BioXSD::SemanticConcept()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:135:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 135 | auto_ptr feat_p(new BioXSD::FeatureType()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:139:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 139 | auto_ptr cref_p(new BioXSD::condensedReferences1()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:142:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 142 | auto_ptr ann_p(new BioXSD::annotation1(feat_p)); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:156:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 156 | auto_ptr pt1_p(new BioXSD::SequencePoint()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:158:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 158 | auto_ptr pt2_p(new BioXSD::SequencePoint()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:161:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 161 | auto_ptr pos_p(new BioXSD::SequencePosition()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:165:17: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 165 | auto_ptr occ_p(new BioXSD::occurrence()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp:177:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 177 | auto_ptr occRef_p(new BioXSD::blockWithOccurrenceReferences()); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp: At global scope: +_write_bioxsd.cpp:199:1: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 199 | auto_ptr _get_bxScore( const fc::contact_t& __ct, const std::string& __scid ) + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +_write_bioxsd.cpp: In function 'std::auto_ptr _get_bxScore(const freecontact::contact_t&, const std::string&)': +_write_bioxsd.cpp:201:5: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] + 201 | auto_ptr MI_score_p(new BioXSD::Score( bo::str(bo::format("%g") % __ct.score) )); + | ^~~~~~~~ +/usr/include/c++/15/bits/unique_ptr.h:58:28: note: declared here + 58 | template class auto_ptr; + | ^~~~~~~~ +/bin/sh ../libtool --tag=CXX --mode=link g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -L/usr/lib -Wl,-z,relro -Wl,-z,now -o freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -lboost_program_options -lxerces-c ../lib/libfreecontact.la libtool: link: g++ -fopenmp -g -O2 -ffile-prefix-map=/build/reproducible-path/freecontact-1.0.21=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/freecontact freecontact-freecontact.o freecontact-_write_bioxsd.o freecontact-freecontact_input_xsd.o freecontact-freecontact_output_xsd.o freecontact-BioXSD-1.1_xsd.o -L/usr/lib -lboost_program_options -lxerces-c ../lib/.libs/libfreecontact.so -pthread -fopenmp make[2]: Leaving directory '/build/reproducible-path/freecontact-1.0.21/src' make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21' @@ -9375,7 +9411,7 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/lib' /usr/bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libfreecontact.la '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libfreecontact.so.0.0.0 /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu/libfreecontact.so.0.0.0 libtool: install: (cd /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so.0 || { rm -f libfreecontact.so.0 && ln -s libfreecontact.so.0.0.0 libfreecontact.so.0; }; }) libtool: install: (cd /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/lib/aarch64-linux-gnu && { ln -s -f libfreecontact.so.0.0.0 libfreecontact.so || { rm -f libfreecontact.so && ln -s libfreecontact.so.0.0.0 libfreecontact.so; }; }) @@ -9392,7 +9428,7 @@ make[2]: Entering directory '/build/reproducible-path/freecontact-1.0.21/src' make[3]: Entering directory '/build/reproducible-path/freecontact-1.0.21/src' /usr/bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c freecontact '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c freecontact '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin' libtool: warning: '../lib/libfreecontact.la' has not been installed in '/usr/lib/aarch64-linux-gnu' libtool: install: /usr/bin/install -c .libs/freecontact /build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/bin/freecontact /usr/bin/mkdir -p '/build/reproducible-path/freecontact-1.0.21/debian/tmp/usr/share/doc/freecontact/examples' @@ -9484,10 +9520,10 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'freecontact' in '../freecontact_1.0.21-16_arm64.deb'. -dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-16_arm64.deb'. dpkg-deb: building package 'libfreecontact0t64' in '../libfreecontact0t64_1.0.21-16_arm64.deb'. -dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-16_arm64.deb'. dpkg-deb: building package 'libfreecontact0t64-dbgsym' in '../libfreecontact0t64-dbgsym_1.0.21-16_arm64.deb'. +dpkg-deb: building package 'libfreecontact-dev' in '../libfreecontact-dev_1.0.21-16_arm64.deb'. +dpkg-deb: building package 'freecontact-dbgsym' in '../freecontact-dbgsym_1.0.21-16_arm64.deb'. dpkg-deb: building package 'libfreecontact-doc' in '../libfreecontact-doc_1.0.21-16_all.deb'. dpkg-genbuildinfo --build=binary -O../freecontact_1.0.21-16_arm64.buildinfo dpkg-genchanges --build=binary -O../freecontact_1.0.21-16_arm64.changes @@ -9496,12 +9532,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2419779/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3198097 and its subdirectories -I: Current time: Sat Nov 21 22:34:33 -12 2026 -I: pbuilder-time-stamp: 1795343673 +I: removing directory /srv/workspace/pbuilder/2419779 and its subdirectories +I: Current time: Mon Oct 20 18:15:14 +14 2025 +I: pbuilder-time-stamp: 1760933714