Diff of the two buildlogs: -- --- b1/build.log 2025-07-31 12:27:14.476367732 +0000 +++ b2/build.log 2025-07-31 12:28:27.312465448 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Jul 31 00:26:11 -12 2025 -I: pbuilder-time-stamp: 1753964771 +I: Current time: Thu Sep 3 08:50:17 +14 2026 +I: pbuilder-time-stamp: 1788375017 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying rename_bseq1_t.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/861437/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 2 18:50 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c8b3fdd9c0b1499f9f9bc2c7b74cf9c5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='861437' - PS1='# ' - PS2='> ' + INVOCATION_ID=39c4ac9c157e4a3ab0af1b8d795e7fcb + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=979913 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HkFJpCTw/pbuilderrc_6HSG --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HkFJpCTw/b1 --logfile b1/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.HkFJpCTw/pbuilderrc_EcvV --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.HkFJpCTw/b2 --logfile b2/build.log gatk-fermilite_1.2.1+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/861437/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -285,7 +317,7 @@ Get: 166 http://deb.debian.org/debian trixie/main arm64 libfml0 arm64 0.1+git20221215.85f159e-1 [65.6 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libfml-dev arm64 0.1+git20221215.85f159e-1 [79.9 kB] -Fetched 223 MB in 1s (200 MB/s) +Fetched 223 MB in 1s (266 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -1171,7 +1203,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatk-fermilite_1.2.1+dfsg-2_source.changes dpkg-buildpackage: info: source package gatk-fermilite dpkg-buildpackage: info: source version 1.2.1+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1225,18 +1261,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.919 secs. -The client will now receive all logging from the daemon (pid: 873035). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-873035.out.log +An attempt to start the daemon took 0.961 secs. +The client will now receive all logging from the daemon (pid: 1003168). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1003168.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@67a732ab -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@67a732ab -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5802e0f4 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@415873f9 +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@415873f9 +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b4bb5e2 Starting Build Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@3a2dadac +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@19c8ba3 Compiling initialization script '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1253,20 +1289,20 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@76f8a727 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@e8ce795 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5802e0f4 -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@6859ef73 -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@7283f70e -:compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@6b4bb5e2 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@5863d622 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@91db4dc +:compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.004 secs. -Up-to-date check for task ':compileJava' took 0.032 secs. It is not up-to-date because: +Putting task artifact state for task ':compileJava' into context took 0.008 secs. +Up-to-date check for task ':compileJava' took 0.03 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileJava'. Compiling with JDK Java compiler API. -:compileJava (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.736 secs. -:buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:compileJava (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.769 secs. +:buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. Up-to-date check for task ':buildFermiLib' took 0.002 secs. It is not up-to-date because: @@ -1278,31 +1314,31 @@ gcc -g -O2 -Wall -fPIC -I/usr/lib/jvm/java-21-openjdk-arm64/include -I/usr/lib/jvm/java-21-openjdk-arm64/include/linux -Wdate-time -D_FORTIFY_SOURCE=2 -c -o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.c gcc -dynamiclib -shared -o libfml.so org_broadinstitute_hellbender_utils_fermi_FermiLiteAssembler.o /usr/lib/aarch64-linux-gnu/libfml.so -lm -lz -lpthread make[1]: Leaving directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/c' -:buildFermiLib (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.302 secs. -:processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:buildFermiLib (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.343 secs. +:processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. -:classes (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:processResources (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.004 secs. +:classes (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:classes (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. +:debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. Up-to-date check for task ':debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/debian/gatk-fermilite.pom -:debianMavenPom (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.074 secs. -:jar (Thread[#53,Task worker for ':' Thread 4,5,main]) started. +:debianMavenPom (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.106 secs. +:jar (Thread[#54,Task worker for ':' Thread 5,5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.004 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.006 secs. It is not up-to-date because: No history is available. -:jar (Thread[#53,Task worker for ':' Thread 4,5,main]) completed. Took 0.047 secs. +:jar (Thread[#54,Task worker for ':' Thread 5,5,main]) completed. Took 0.058 secs. BUILD SUCCESSFUL in 6s 4 actionable tasks: 4 executed @@ -1320,17 +1356,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 0.995 secs. -The client will now receive all logging from the daemon (pid: 874367). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-874367.out.log +An attempt to start the daemon took 1.009 secs. +The client will now receive all logging from the daemon (pid: 1003621). The daemon log file: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/daemon/4.4.1/daemon-1003621.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@69175d20 -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@69175d20 -Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@c18331b +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@28bf62fd +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@28bf62fd +Creating new cache for fileHashes, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@b53fb45 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@74e6e56d +Creating new cache for metadata-1.1/results, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c46a4c7 Settings evaluated using settings file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build.gradle'. Included projects: [root project 'gatk-fermilite'] @@ -1342,73 +1378,73 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@37ffed64 +Creating new cache for annotation-processors, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@7532a012 Tasks to be executed: [task ':compileJava', task ':buildFermiLib', task ':processResources', task ':classes', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@c18331b -Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1e1e501e -Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@1056b685 -:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@b53fb45 +Creating new cache for taskHistory, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@1208a018 +Creating new cache for outputFiles, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c46e704 +:compileJava (Thread[#50,Task worker for ':',5,main]) started. :compileJava -Putting task artifact state for task ':compileJava' into context took 0.008 secs. -Skipping task ':compileJava' as it is up-to-date (took 0.036 secs). +Putting task artifact state for task ':compileJava' into context took 0.004 secs. +Skipping task ':compileJava' as it is up-to-date (took 0.041 secs). :compileJava UP-TO-DATE -:compileJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.098 secs. -:buildFermiLib (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:compileJava (Thread[#50,Task worker for ':',5,main]) completed. Took 0.092 secs. +:buildFermiLib (Thread[#50,Task worker for ':',5,main]) started. :buildFermiLib Putting task artifact state for task ':buildFermiLib' into context took 0.0 secs. -Skipping task ':buildFermiLib' as it is up-to-date (took 0.003 secs). +Skipping task ':buildFermiLib' as it is up-to-date (took 0.004 secs). :buildFermiLib UP-TO-DATE -:buildFermiLib (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.009 secs. -:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:buildFermiLib (Thread[#50,Task worker for ':',5,main]) completed. Took 0.008 secs. +:processResources (Thread[#50,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/main/resources', not found Skipping task ':processResources' as it has no source files and no previous output files. :processResources NO-SOURCE -:processResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.002 secs. -:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.003 secs. +:classes (Thread[#50,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. :classes UP-TO-DATE -:classes (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. +:compileTestJava (Thread[#50,Task worker for ':',5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@6c99c817 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@3bc6ea9f Loading the Maven rules... Replacing org.testng:testng:jar:6.9.6 -> org.testng:testng:jar:debian Passing through org.beanshell:bsh:jar:debian Passing through com.beust:jcommander:jar:debian -Up-to-date check for task ':compileTestJava' took 0.436 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.406 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':compileTestJava'. Compiling with JDK Java compiler API. -:compileTestJava (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 1.156 secs. -:processTestResources (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:compileTestJava (Thread[#50,Task worker for ':',5,main]) completed. Took 1.086 secs. +:processTestResources (Thread[#50,Task worker for ':',5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/gatk-fermilite-1.2.1+dfsg/src/test/resources', not found Skipping task ':processTestResources' as it has no source files and no previous output files. :processTestResources NO-SOURCE -:processTestResources (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.003 secs. -:testClasses (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:processTestResources (Thread[#50,Task worker for ':',5,main]) completed. Took 0.003 secs. +:testClasses (Thread[#50,Task worker for ':',5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:test (Thread[#51,Task worker for ':' Thread 2,5,main]) started. +:testClasses (Thread[#50,Task worker for ':',5,main]) completed. Took 0.0 secs. +:test (Thread[#50,Task worker for ':',5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. -Up-to-date check for task ':test' took 0.078 secs. It is not up-to-date because: +Up-to-date check for task ':test' took 0.065 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath16592587798703584464txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath12726167159558818451txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. Results: SUCCESS (2 tests, 2 successes, 0 failures, 0 skipped) -Finished generating test XML results (0.015 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test +Finished generating test XML results (0.016 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/test-results/test Generating HTML test report... -Finished generating test html results (0.032 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test -:test (Thread[#51,Task worker for ':' Thread 2,5,main]) completed. Took 1.116 secs. +Finished generating test html results (0.033 secs) into: /build/reproducible-path/gatk-fermilite-1.2.1+dfsg/build/reports/tests/test +:test (Thread[#50,Task worker for ':',5,main]) completed. Took 1.058 secs. BUILD SUCCESSFUL in 7s 4 actionable tasks: 2 executed, 2 up-to-date @@ -1445,12 +1481,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/979913/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/861437 and its subdirectories -I: Current time: Thu Jul 31 00:27:13 -12 2025 -I: pbuilder-time-stamp: 1753964833 +I: removing directory /srv/workspace/pbuilder/979913 and its subdirectories +I: Current time: Thu Sep 3 08:51:26 +14 2026 +I: pbuilder-time-stamp: 1788375086