Diff of the two buildlogs: -- --- b1/build.log 2025-09-10 06:29:18.501537677 +0000 +++ b2/build.log 2025-09-10 06:35:32.290026097 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 9 18:23:03 -12 2025 -I: pbuilder-time-stamp: 1757485383 +I: Current time: Wed Oct 14 02:52:51 +14 2026 +I: pbuilder-time-stamp: 1791895971 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -39,53 +39,85 @@ dpkg-source: info: applying waiting_launcher.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/160481/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 13 12:53 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='9da3b98679854eae9171e8df48001017' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='160481' - PS1='# ' - PS2='> ' + INVOCATION_ID=9c01658b4fc84f4cbf85622796fdd39e + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2732150 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ch3t0NpE/pbuilderrc_Qxej --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ch3t0NpE/b1 --logfile b1/build.log jalview_2.11.5.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ch3t0NpE/pbuilderrc_ygkC --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ch3t0NpE/b2 --logfile b2/build.log jalview_2.11.5.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/160481/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -654,7 +686,7 @@ Get: 457 http://deb.debian.org/debian forky/main arm64 libmockito-java all 3.3.0-2 [510 kB] Get: 458 http://deb.debian.org/debian forky/main arm64 libvamsas-client-java all 0.2+dfsg-2 [584 kB] Get: 459 http://deb.debian.org/debian forky/main arm64 varna all 3-93+ds-7 [801 kB] -Fetched 389 MB in 4s (88.7 MB/s) +Fetched 389 MB in 4s (107 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20012 files and directories currently installed.) @@ -2158,8 +2190,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Sep 10 06:25:03 UTC 2025. -Universal Time is now: Wed Sep 10 06:25:03 UTC 2025. +Local time is now: Tue Oct 13 12:54:52 UTC 2026. +Universal Time is now: Tue Oct 13 12:54:52 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:arm64 (1.17.0-2+b1) ... @@ -2747,7 +2779,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/jalview-2.11.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../jalview_2.11.5.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/jalview-2.11.5.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../jalview_2.11.5.0+dfsg-1_source.changes dpkg-buildpackage: info: source package jalview dpkg-buildpackage: info: source version 2.11.5.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2761,7 +2797,7 @@ sh -c "find . -wholename .*build/debian | xargs echo | sed -e 's^build/tmp^build^g' | xargs rm -Rf" rm -Rf /build/reproducible-path/jalview-2.11.5.0\+dfsg/.gradle /build/reproducible-path/jalview-2.11.5.0\+dfsg/buildSrc/.gradle .m2 jh_clean -Duplicate specification "u=s" for option "u" +Duplicate specification "unlink|u" for option "u" debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/jalview-2.11.5.0+dfsg' # Removing our handmade pom. @@ -2804,18 +2840,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.478 secs. -The client will now receive all logging from the daemon (pid: 204603). The daemon log file: /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/daemon/4.4.1/daemon-204603.out.log +An attempt to start the daemon took 1.954 secs. +The client will now receive all logging from the daemon (pid: 2758990). The daemon log file: /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/daemon/4.4.1/daemon-2758990.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d3c7496 -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1d3c7496 -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@7b989250 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@564bb9dd +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@564bb9dd +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@686e88e5 Starting Build Compiling initialization script '/build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@adf7f02 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@43f16eb4 Compiling initialization script '/build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.5.0+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/jalview-2.11.5.0+dfsg/settings.gradle' using BuildScriptTransformer. @@ -2842,73 +2878,73 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@23fe6496 +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@5c37cdb3 Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':processResources', task ':classes', task ':debianMavenPom', task ':jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@7b989250 -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@30558743 -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@4c1b3f8 +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@686e88e5 +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@8473583 +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@6a84214f :copyHelp (Thread[#59,Task worker for ':',5,main]) started. :copyHelp -Putting task artifact state for task ':copyHelp' into context took 0.001 secs. -Up-to-date check for task ':copyHelp' took 0.213 secs. It is not up-to-date because: +Putting task artifact state for task ':copyHelp' into context took 0.005 secs. +Up-to-date check for task ':copyHelp' took 0.393 secs. It is not up-to-date because: No history is available. -:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 1.092 secs. +:copyHelp (Thread[#59,Task worker for ':',5,main]) completed. Took 1.669 secs. :buildIndices (Thread[#59,Task worker for ':',5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.145 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.164 secs. It is not up-to-date because: No history is available. Starting process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.5.0+dfsg/classes:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/commons-math3.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/biojava6-jcolorbrewer.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java'' -:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 1.472 secs. +:buildIndices (Thread[#59,Task worker for ':',5,main]) completed. Took 1.873 secs. :copyResources (Thread[#59,Task worker for ':',5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Up-to-date check for task ':copyResources' took 0.052 secs. It is not up-to-date because: +Up-to-date check for task ':copyResources' took 0.044 secs. It is not up-to-date because: No history is available. -:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.127 secs. -:copyChannelResources (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:copyResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.136 secs. +:copyChannelResources (Thread[#59,Task worker for ':',5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Up-to-date check for task ':copyChannelResources' took 0.009 secs. It is not up-to-date because: +Up-to-date check for task ':copyChannelResources' took 0.018 secs. It is not up-to-date because: No history is available. -:copyChannelResources (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.035 secs. -:createBuildProperties (Thread[#60,Task worker for ':' Thread 2,5,main]) started. +:copyChannelResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.066 secs. +:createBuildProperties (Thread[#59,Task worker for ':',5,main]) started. :createBuildProperties Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[#60,Task worker for ':' Thread 2,5,main]) completed. Took 0.148 secs. -:buildResources (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:createBuildProperties (Thread[#59,Task worker for ':',5,main]) completed. Took 0.316 secs. +:buildResources (Thread[#59,Task worker for ':',5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. -:buildResources (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. -:copyDocs (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:buildResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. +:copyDocs (Thread[#59,Task worker for ':',5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Up-to-date check for task ':copyDocs' took 0.02 secs. It is not up-to-date because: +Up-to-date check for task ':copyDocs' took 0.024 secs. It is not up-to-date because: No history is available. -:copyDocs (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.106 secs. -:convertMdFiles (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:copyDocs (Thread[#59,Task worker for ':',5,main]) completed. Took 0.126 secs. +:convertMdFiles (Thread[#59,Task worker for ':',5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. -:convertMdFiles (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.0 secs. -:releasesTemplates (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:convertMdFiles (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. +:releasesTemplates (Thread[#59,Task worker for ':',5,main]) started. :releasesTemplates Skipping task ':releasesTemplates' as it has no actions. -:releasesTemplates (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.003 secs. -:prepare (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:releasesTemplates (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. +:prepare (Thread[#59,Task worker for ':',5,main]) started. :prepare Skipping task ':prepare' as it has no actions. -:prepare (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.001 secs. -:compileJava (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:prepare (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. +:compileJava (Thread[#59,Task worker for ':',5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.5.0+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.5.0+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 1.641 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 2.845 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileJava'. @@ -2961,32 +2997,32 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 22.148 secs. -:processResources (Thread[#62,Task worker for ':' Thread 4,5,main]) started. +:compileJava (Thread[#59,Task worker for ':',5,main]) completed. Took 40.607 secs. +:processResources (Thread[#59,Task worker for ':',5,main]) started. :processResources Putting task artifact state for task ':processResources' into context took 0.0 secs. -Up-to-date check for task ':processResources' took 0.067 secs. It is not up-to-date because: +Up-to-date check for task ':processResources' took 0.124 secs. It is not up-to-date because: No history is available. -:processResources (Thread[#62,Task worker for ':' Thread 4,5,main]) completed. Took 0.298 secs. -:classes (Thread[#60,Task worker for ':' Thread 2,5,main]) started. +:processResources (Thread[#59,Task worker for ':',5,main]) completed. Took 0.511 secs. +:classes (Thread[#59,Task worker for ':',5,main]) started. :classes Skipping task ':classes' as it has no actions. -:classes (Thread[#60,Task worker for ':' Thread 2,5,main]) completed. Took 0.0 secs. -:debianMavenPom (Thread[#60,Task worker for ':' Thread 2,5,main]) started. +:classes (Thread[#59,Task worker for ':',5,main]) completed. Took 0.0 secs. +:debianMavenPom (Thread[#59,Task worker for ':',5,main]) started. :debianMavenPom Putting task artifact state for task ':debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':debianMavenPom' took 0.0 secs. It is not up-to-date because: +Up-to-date check for task ':debianMavenPom' took 0.003 secs. It is not up-to-date because: No history is available. Generating pom file /build/reproducible-path/jalview-2.11.5.0+dfsg/build/debian/jalview.pom -:debianMavenPom (Thread[#60,Task worker for ':' Thread 2,5,main]) completed. Took 0.12 secs. -:jar (Thread[#60,Task worker for ':' Thread 2,5,main]) started. +:debianMavenPom (Thread[#59,Task worker for ':',5,main]) completed. Took 0.175 secs. +:jar (Thread[#59,Task worker for ':',5,main]) started. :jar Putting task artifact state for task ':jar' into context took 0.0 secs. -Up-to-date check for task ':jar' took 0.106 secs. It is not up-to-date because: +Up-to-date check for task ':jar' took 0.254 secs. It is not up-to-date because: No history is available. -:jar (Thread[#60,Task worker for ':' Thread 2,5,main]) completed. Took 1.153 secs. +:jar (Thread[#59,Task worker for ':',5,main]) completed. Took 1.596 secs. -BUILD SUCCESSFUL in 39s +BUILD SUCCESSFUL in 1m 4s 10 actionable tasks: 10 executed debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/jalview-2.11.5.0+dfsg' @@ -3008,17 +3044,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.525 secs. -The client will now receive all logging from the daemon (pid: 206015). The daemon log file: /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/daemon/4.4.1/daemon-206015.out.log +An attempt to start the daemon took 2.1 secs. +The client will now receive all logging from the daemon (pid: 2769589). The daemon log file: /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/daemon/4.4.1/daemon-2769589.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. Using 12 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1cbf7e6d -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1cbf7e6d -Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5780478a +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@43536473 +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@43536473 +Creating new cache for fileHashes, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@5612e38 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@e65faf1 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5f8578ea Settings evaluated using settings file '/build/reproducible-path/jalview-2.11.5.0+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/jalview-2.11.5.0+dfsg/build.gradle'. Included projects: [root project 'jalview'] @@ -3038,77 +3074,77 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6e993e06 +Creating new cache for annotation-processors, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@203e4ccd Tasks to be executed: [task ':copyHelp', task ':buildIndices', task ':copyResources', task ':copyChannelResources', task ':createBuildProperties', task ':buildResources', task ':copyDocs', task ':convertMdFiles', task ':releasesTemplates', task ':prepare', task ':compileJava', task ':compileTestJava', task ':processTestResources', task ':testClasses', task ':testTask0', task ':testTask1', task ':testTask2', task ':testTask3', task ':test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5780478a -Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@2a90b203 -Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@214c11c -:copyHelp (Thread[#61,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@5612e38 +Creating new cache for taskHistory, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@39a6dd8d +Creating new cache for outputFiles, path /build/reproducible-path/jalview-2.11.5.0+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@ed9e882 +:copyHelp (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :copyHelp Putting task artifact state for task ':copyHelp' into context took 0.001 secs. -Skipping task ':copyHelp' as it is up-to-date (took 0.267 secs). +Skipping task ':copyHelp' as it is up-to-date (took 0.387 secs). :copyHelp UP-TO-DATE -:copyHelp (Thread[#61,Task worker for ':',5,main]) completed. Took 0.292 secs. -:buildIndices (Thread[#61,Task worker for ':',5,main]) started. +:copyHelp (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.421 secs. +:buildIndices (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :buildIndices Putting task artifact state for task ':buildIndices' into context took 0.0 secs. -Up-to-date check for task ':buildIndices' took 0.389 secs. It is not up-to-date because: +Up-to-date check for task ':buildIndices' took 0.659 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/Jmol.jar has been removed. Input property 'classpath' file /build/reproducible-path/jalview-2.11.5.0+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/apache-mime4j-core.jar has been removed. Starting process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java''. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/resources/help_build/help Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -cp /build/reproducible-path/jalview-2.11.5.0+dfsg/classes:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/testng.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/mockito-core.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/junit4.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jcommander.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jaxb-impl.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/guava.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/varna.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/vamsas-client.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/slf4j-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/org.jfree.svg.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/min-jaba-client.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/miglayout.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/log4j-core.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/log4j-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/log4j-1.2.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jswingreader.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jsoup.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/json-simple.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/json.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jsearch-indexer.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/Jmol.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jh.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jetty9-server.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jetty9-util.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jersey1-core.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jersey1-client.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jaxrs-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/jaxb-api.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/intervalstorej.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/httpmime.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/httpcore.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/httpclient.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/htsjdk.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/groovy-all.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/commons-math3.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/commons-discovery.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/biojava6-ontology.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/biojava6-jcolorbrewer.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/axis-jaxrpc.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/axis.jar:/build/reproducible-path/jalview-2.11.5.0+dfsg/cpJars/apache-mime4j-core.jar com.sun.java.help.search.Indexer html Successfully started process 'command '/usr/lib/jvm/java-21-openjdk-arm64/bin/java'' -:buildIndices (Thread[#61,Task worker for ':',5,main]) completed. Took 1.62 secs. -:copyResources (Thread[#66,Task worker for ':' Thread 6,5,main]) started. +:buildIndices (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 2.495 secs. +:copyResources (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :copyResources Putting task artifact state for task ':copyResources' into context took 0.0 secs. -Skipping task ':copyResources' as it is up-to-date (took 0.037 secs). +Skipping task ':copyResources' as it is up-to-date (took 0.08 secs). :copyResources UP-TO-DATE -:copyResources (Thread[#66,Task worker for ':' Thread 6,5,main]) completed. Took 0.039 secs. -:copyChannelResources (Thread[#62,Task worker for ':' Thread 2,5,main]) started. +:copyResources (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.088 secs. +:copyChannelResources (Thread[#65,Task worker for ':' Thread 7,5,main]) started. :copyChannelResources Putting task artifact state for task ':copyChannelResources' into context took 0.0 secs. -Skipping task ':copyChannelResources' as it is up-to-date (took 0.007 secs). +Skipping task ':copyChannelResources' as it is up-to-date (took 0.016 secs). :copyChannelResources UP-TO-DATE -:copyChannelResources (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.009 secs. -:createBuildProperties (Thread[#62,Task worker for ':' Thread 2,5,main]) started. +:copyChannelResources (Thread[#65,Task worker for ':' Thread 7,5,main]) completed. Took 0.018 secs. +:createBuildProperties (Thread[#65,Task worker for ':' Thread 7,5,main]) started. :createBuildProperties Putting task artifact state for task ':createBuildProperties' into context took 0.001 secs. Up-to-date check for task ':createBuildProperties' took 0.0 secs. It is not up-to-date because: Task has not declared any outputs. Starting process 'command 'sh''. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: sh debian/write_build_properties_file.sh Successfully started process 'command 'sh'' -:createBuildProperties (Thread[#62,Task worker for ':' Thread 2,5,main]) completed. Took 0.157 secs. -:buildResources (Thread[#61,Task worker for ':',5,main]) started. +:createBuildProperties (Thread[#65,Task worker for ':' Thread 7,5,main]) completed. Took 0.315 secs. +:buildResources (Thread[#65,Task worker for ':' Thread 7,5,main]) started. :buildResources Skipping task ':buildResources' as it has no actions. -:buildResources (Thread[#61,Task worker for ':',5,main]) completed. Took 0.0 secs. -:copyDocs (Thread[#61,Task worker for ':',5,main]) started. +:buildResources (Thread[#65,Task worker for ':' Thread 7,5,main]) completed. Took 0.0 secs. +:copyDocs (Thread[#65,Task worker for ':' Thread 7,5,main]) started. :copyDocs Putting task artifact state for task ':copyDocs' into context took 0.0 secs. -Skipping task ':copyDocs' as it is up-to-date (took 0.014 secs). +Skipping task ':copyDocs' as it is up-to-date (took 0.015 secs). :copyDocs UP-TO-DATE -:copyDocs (Thread[#61,Task worker for ':',5,main]) completed. Took 0.016 secs. -:convertMdFiles (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:copyDocs (Thread[#65,Task worker for ':' Thread 7,5,main]) completed. Took 0.023 secs. +:convertMdFiles (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :convertMdFiles Skipping task ':convertMdFiles' as it has no actions. :convertMdFiles UP-TO-DATE -:convertMdFiles (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 0.0 secs. -:releasesTemplates (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:convertMdFiles (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:releasesTemplates (Thread[#68,Task worker for ':' Thread 10,5,main]) started. :releasesTemplates Skipping task ':releasesTemplates' as it has no actions. :releasesTemplates UP-TO-DATE -:releasesTemplates (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 0.0 secs. -:prepare (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:releasesTemplates (Thread[#68,Task worker for ':' Thread 10,5,main]) completed. Took 0.0 secs. +:prepare (Thread[#68,Task worker for ':' Thread 10,5,main]) started. :prepare Skipping task ':prepare' as it has no actions. -:prepare (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 0.0 secs. -:compileJava (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:prepare (Thread[#68,Task worker for ':' Thread 10,5,main]) completed. Took 0.0 secs. +:compileJava (Thread[#68,Task worker for ':' Thread 10,5,main]) started. :compileJava Putting task artifact state for task ':compileJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.5.0+dfsg/src/main/java', not found file or directory '/build/reproducible-path/jalview-2.11.5.0+dfsg/src/main/java', not found -Up-to-date check for task ':compileJava' took 2.2 secs. It is not up-to-date because: +Up-to-date check for task ':compileJava' took 3.213 secs. It is not up-to-date because: Input property 'classpath' file /build/reproducible-path/jalview-2.11.5.0+dfsg/classes/com/github/reinert/jjschema/Attributes.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.5.0+dfsg/classes/com/stevesoft/pat/AmpersandRule.class has been added. Input property 'classpath' file /build/reproducible-path/jalview-2.11.5.0+dfsg/classes/com/stevesoft/pat/Any.class has been added. @@ -3162,13 +3198,13 @@ Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 14 warnings -:compileJava (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 25.121 secs. -:compileTestJava (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:compileJava (Thread[#68,Task worker for ':' Thread 10,5,main]) completed. Took 31.724 secs. +:compileTestJava (Thread[#68,Task worker for ':' Thread 10,5,main]) started. :compileTestJava Putting task artifact state for task ':compileTestJava' into context took 0.0 secs. file or directory '/build/reproducible-path/jalview-2.11.5.0+dfsg/src/test/java', not found file or directory '/build/reproducible-path/jalview-2.11.5.0+dfsg/src/test/java', not found -Up-to-date check for task ':compileTestJava' took 0.13 secs. It is not up-to-date because: +Up-to-date check for task ':compileTestJava' took 0.179 secs. It is not up-to-date because: No history is available. Setting target compatibility to 11 All input files are considered out-of-date for incremental task ':compileTestJava'. @@ -3178,96 +3214,96 @@ Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. -:compileTestJava (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 5.713 secs. -:processTestResources (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:compileTestJava (Thread[#68,Task worker for ':' Thread 10,5,main]) completed. Took 7.777 secs. +:processTestResources (Thread[#68,Task worker for ':' Thread 10,5,main]) started. :processTestResources Putting task artifact state for task ':processTestResources' into context took 0.0 secs. -Up-to-date check for task ':processTestResources' took 0.065 secs. It is not up-to-date because: +Up-to-date check for task ':processTestResources' took 0.126 secs. It is not up-to-date because: No history is available. -:processTestResources (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 0.345 secs. -:testClasses (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:processTestResources (Thread[#68,Task worker for ':' Thread 10,5,main]) completed. Took 0.376 secs. +:testClasses (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :testClasses Skipping task ':testClasses' as it has no actions. -:testClasses (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 0.0 secs. -:testTask0 (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:testClasses (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.0 secs. +:testTask0 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :testTask0 Putting task artifact state for task ':testTask0' into context took 0.0 secs. -Up-to-date check for task ':testTask0' took 0.076 secs. It is not up-to-date because: +Up-to-date check for task ':testTask0' took 0.153 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath10455746925077317401txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath121573813391718858txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' Successfully started process 'Gradle Test Executor 1' Gradle Test Executor 1 started executing tests. Gradle Test Executor 1 finished executing tests. -Finished generating test XML results (0.407 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask0 +Finished generating test XML results (0.099 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask0 Generating HTML test report... -Finished generating test html results (0.383 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask0 -:testTask0 (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 17.804 secs. -:testTask1 (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +Finished generating test html results (0.091 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask0 +:testTask0 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 9.458 secs. +:testTask1 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :testTask1 Putting task artifact state for task ':testTask1' into context took 0.0 secs. -Up-to-date check for task ':testTask1' took 0.558 secs. It is not up-to-date because: +Up-to-date check for task ':testTask1' took 0.059 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath14137961005358373923txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath9225095192036322973txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' Gradle Test Executor 2 started executing tests. Gradle Test Executor 2 finished executing tests. -Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask1 +Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask1 Generating HTML test report... -Finished generating test html results (0.004 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1 +Finished generating test html results (0.013 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1/index.html -:testTask1 (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 35.799 secs. -:testTask2 (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:testTask1 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 3.786 secs. +:testTask2 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :testTask2 Putting task artifact state for task ':testTask2' into context took 0.0 secs. -Up-to-date check for task ':testTask2' took 0.025 secs. It is not up-to-date because: +Up-to-date check for task ':testTask2' took 0.02 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath11400489521291980034txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' +Starting process 'Gradle Test Executor 3'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath17980266876946051547txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 3' Successfully started process 'Gradle Test Executor 3' Gradle Test Executor 3 started executing tests. Gradle Test Executor 3 finished executing tests. -Finished generating test XML results (0.006 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask2 +Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask2 Generating HTML test report... -Finished generating test html results (0.013 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2 +Finished generating test html results (0.006 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2/index.html -:testTask2 (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 19.472 secs. -:testTask3 (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:testTask2 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 3.514 secs. +:testTask3 (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :testTask3 Putting task artifact state for task ':testTask3' into context took 0.0 secs. -Up-to-date check for task ':testTask3' took 0.05 secs. It is not up-to-date because: +Up-to-date check for task ':testTask3' took 0.023 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath11960543064348683487txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' +Starting process 'Gradle Test Executor 4'. Working directory: /build/reproducible-path/jalview-2.11.5.0+dfsg Command: /usr/lib/jvm/java-21-openjdk-arm64/bin/java -Dorg.gradle.native=false @/tmp/gradle-worker-classpath3990630668315883045txt -Xmx1024m -Dfile.encoding=UTF-8 -Duser.country -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 4' Successfully started process 'Gradle Test Executor 4' Gradle Test Executor 4 started executing tests. Gradle Test Executor 4 finished executing tests. -Finished generating test XML results (0.001 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask3 +Finished generating test XML results (0.002 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/test-results/testTask3 Generating HTML test report... -Finished generating test html results (0.008 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3 +Finished generating test html results (0.005 secs) into: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3 There were failing tests. See the report at: file:///build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3/index.html -:testTask3 (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 5.553 secs. -:test (Thread[#67,Task worker for ':' Thread 7,5,main]) started. +:testTask3 (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 3.488 secs. +:test (Thread[#61,Task worker for ':' Thread 3,5,main]) started. :test Putting task artifact state for task ':test' into context took 0.0 secs. Skipping task ':test' as it has no source files and no previous output files. :test NO-SOURCE -:test (Thread[#67,Task worker for ':' Thread 7,5,main]) completed. Took 0.023 secs. +:test (Thread[#61,Task worker for ':' Thread 3,5,main]) completed. Took 0.006 secs. -BUILD SUCCESSFUL in 2m 2s +BUILD SUCCESSFUL in 1m 16s 13 actionable tasks: 9 executed, 4 up-to-date -┌──────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 12.718 seconds│ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask0/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 34.012 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 19.308 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 5.283 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 71.321 seconds │ -└──────────────────────────────────────────────────────────────────────────────────────────────────────┘ +┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 6.595 seconds│ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask0/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.580 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.365 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.334 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 16.874 seconds │ +└─────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3367,23 +3403,23 @@ * Get more help at https://help.gradle.org -BUILD FAILED in 2m 2s +BUILD FAILED in 1m 16s 13 actionable tasks: 9 executed, 4 up-to-date -┌──────────────────────────────────────────────────────────────────────────────────────────────────────┐ -│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 12.718 seconds│ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask0/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 34.012 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 19.308 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 5.283 seconds │ -│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3/index.html │ -├──────────────────────────────────────────────────────────────────────────────────────────────────────┤ -│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 71.321 seconds │ -└──────────────────────────────────────────────────────────────────────────────────────────────────────┘ +┌─────────────────────────────────────────────────────────────────────────────────────────────────────┐ +│jalview:testTask0 results: SUCCESS (345 tests, 345 successes, 0 failures, 0 skipped) in 6.595 seconds│ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask0/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask1 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.580 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask1/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask2 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.365 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask2/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│jalview:testTask3 results: ----- (0 tests, 0 successes, 0 failures, 0 skipped) in 3.334 seconds │ +│Report file: /build/reproducible-path/jalview-2.11.5.0+dfsg/build/reports/tests/testTask3/index.html │ +├─────────────────────────────────────────────────────────────────────────────────────────────────────┤ +│OVERALL: results: FAILURE (345 tests, 345 successes, 0 failures, 0 skipped) in 16.874 seconds │ +└─────────────────────────────────────────────────────────────────────────────────────────────────────┘ FAILURE: Build failed with an exception. @@ -3479,7 +3515,7 @@ * Get more help at https://help.gradle.org -BUILD FAILED in 2m 2s +BUILD FAILED in 1m 16s dh_auto_test: error: gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=jalview -Dfile.encoding=UTF-8 --parallel --max-workers=12 test returned exit code 1 echo "------------------------------" ------------------------------ @@ -3532,12 +3568,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2732150/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/160481 and its subdirectories -I: Current time: Tue Sep 9 18:29:17 -12 2025 -I: pbuilder-time-stamp: 1757485757 +I: removing directory /srv/workspace/pbuilder/2732150 and its subdirectories +I: Current time: Wed Oct 14 02:58:31 +14 2026 +I: pbuilder-time-stamp: 1791896311