Diff of the two buildlogs:

--
--- b1/build.log	2025-07-28 20:45:04.467877819 +0000
+++ b2/build.log	2025-07-28 22:29:55.987175382 +0000
@@ -1,6 +1,6 @@
 I: pbuilder: network access will be disabled during build
-I: Current time: Mon Jul 28 06:32:22 -12 2025
-I: pbuilder-time-stamp: 1753727542
+I: Current time: Mon Aug 31 17:08:25 +14 2026
+I: pbuilder-time-stamp: 1788145705
 I: Building the build Environment
 I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz]
 I: copying local configuration
@@ -34,52 +34,84 @@
 dpkg-source: info: applying doxygen_mathjax_path.patch
 I: Not using root during the build.
 I: Installing the build-deps
-I: user script /srv/workspace/pbuilder/665401/tmp/hooks/D02_print_environment starting
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/D01_modify_environment starting
+debug: Running on codethink03-arm64.
+I: Changing host+domainname to test build reproducibility
+I: Adding a custom variable just for the fun of it...
+I: Changing /bin/sh to bash
+'/bin/sh' -> '/bin/bash'
+lrwxrwxrwx 1 root root 9 Aug 31 03:08 /bin/sh -> /bin/bash
+I: Setting pbuilder2's login shell to /bin/bash
+I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/D01_modify_environment finished
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/D02_print_environment starting
 I: set
-  BUILDDIR='/build/reproducible-path'
-  BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
-  BUILDUSERNAME='pbuilder1'
-  BUILD_ARCH='arm64'
-  DEBIAN_FRONTEND='noninteractive'
+  BASH=/bin/sh
+  BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath
+  BASH_ALIASES=()
+  BASH_ARGC=()
+  BASH_ARGV=()
+  BASH_CMDS=()
+  BASH_LINENO=([0]="12" [1]="0")
+  BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:.
+  BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment")
+  BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu")
+  BASH_VERSION='5.2.37(1)-release'
+  BUILDDIR=/build/reproducible-path
+  BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other'
+  BUILDUSERNAME=pbuilder2
+  BUILD_ARCH=arm64
+  DEBIAN_FRONTEND=noninteractive
   DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 '
-  DISTRIBUTION='trixie'
-  HOME='/root'
-  HOST_ARCH='arm64'
+  DIRSTACK=()
+  DISTRIBUTION=trixie
+  EUID=0
+  FUNCNAME=([0]="Echo" [1]="main")
+  GROUPS=()
+  HOME=/root
+  HOSTNAME=i-capture-the-hostname
+  HOSTTYPE=aarch64
+  HOST_ARCH=arm64
   IFS=' 	
   '
-  INVOCATION_ID='717e24fd29f142f592b46c3d92112f20'
-  LANG='C'
-  LANGUAGE='en_US:en'
-  LC_ALL='C'
-  MAIL='/var/mail/root'
-  OPTIND='1'
-  PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
-  PBCURRENTCOMMANDLINEOPERATION='build'
-  PBUILDER_OPERATION='build'
-  PBUILDER_PKGDATADIR='/usr/share/pbuilder'
-  PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
-  PBUILDER_SYSCONFDIR='/etc'
-  PPID='665401'
-  PS1='# '
-  PS2='> '
+  INVOCATION_ID=6b2142d8964c4b9994ab65f699657b1c
+  LANG=C
+  LANGUAGE=nl_BE:nl
+  LC_ALL=C
+  MACHTYPE=aarch64-unknown-linux-gnu
+  MAIL=/var/mail/root
+  OPTERR=1
+  OPTIND=1
+  OSTYPE=linux-gnu
+  PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path
+  PBCURRENTCOMMANDLINEOPERATION=build
+  PBUILDER_OPERATION=build
+  PBUILDER_PKGDATADIR=/usr/share/pbuilder
+  PBUILDER_PKGLIBDIR=/usr/lib/pbuilder
+  PBUILDER_SYSCONFDIR=/etc
+  PIPESTATUS=([0]="0")
+  POSIXLY_CORRECT=y
+  PPID=2473280
   PS4='+ '
-  PWD='/'
-  SHELL='/bin/bash'
-  SHLVL='2'
-  SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gh5QLwuK/pbuilderrc_RLWR --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gh5QLwuK/b1 --logfile b1/build.log libsbml_5.20.4+dfsg-0.1.dsc'
-  SUDO_GID='109'
-  SUDO_UID='104'
-  SUDO_USER='jenkins'
-  TERM='unknown'
-  TZ='/usr/share/zoneinfo/Etc/GMT+12'
-  USER='root'
-  _='/usr/bin/systemd-run'
-  http_proxy='http://192.168.101.4:3128'
+  PWD=/
+  SHELL=/bin/bash
+  SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix
+  SHLVL=3
+  SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.gh5QLwuK/pbuilderrc_I4q4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.gh5QLwuK/b2 --logfile b2/build.log libsbml_5.20.4+dfsg-0.1.dsc'
+  SUDO_GID=109
+  SUDO_UID=104
+  SUDO_USER=jenkins
+  TERM=unknown
+  TZ=/usr/share/zoneinfo/Etc/GMT-14
+  UID=0
+  USER=root
+  _='I: set'
+  http_proxy=http://192.168.101.4:3128
 I: uname -a
-  Linux codethink04-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux
+  Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux
 I: ls -l /bin
-  lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin
-I: user script /srv/workspace/pbuilder/665401/tmp/hooks/D02_print_environment finished
+  lrwxrwxrwx 1 root root 7 May 12  2025 /bin -> usr/bin
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/D02_print_environment finished
  -> Attempting to satisfy build-dependencies
  -> Creating pbuilder-satisfydepends-dummy package
 Package: pbuilder-satisfydepends-dummy
@@ -768,7 +800,7 @@
 Get: 613 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.5.0-3 [4360 B]
 Get: 614 http://deb.debian.org/debian trixie/main arm64 rdfind arm64 1.6.0-1+b2 [39.1 kB]
 Get: 615 http://deb.debian.org/debian trixie/main arm64 swig arm64 4.3.0-1 [1406 kB]
-Fetched 427 MB in 3s (129 MB/s)
+Fetched 427 MB in 3s (170 MB/s)
 Preconfiguring packages ...
 Selecting previously unselected package libexpat1:arm64.
 (Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 19964 files and directories currently installed.)
@@ -2770,8 +2802,8 @@
 Setting up tzdata (2025b-4) ...
 
 Current default time zone: 'Etc/UTC'
-Local time is now:      Mon Jul 28 18:35:39 UTC 2025.
-Universal Time is now:  Mon Jul 28 18:35:39 UTC 2025.
+Local time is now:      Mon Aug 31 03:09:46 UTC 2026.
+Universal Time is now:  Mon Aug 31 03:09:46 UTC 2026.
 Run 'dpkg-reconfigure tzdata' if you wish to change it.
 
 Setting up libxcb-present0:arm64 (1.17.0-2+b1) ...
@@ -3477,7 +3509,11 @@
 Building tag database...
  -> Finished parsing the build-deps
 I: Building the package
-I: Running cd /build/reproducible-path/libsbml-5.20.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S  > ../libsbml_5.20.4+dfsg-0.1_source.changes
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/A99_set_merged_usr starting
+Not re-configuring usrmerge for trixie
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/A99_set_merged_usr finished
+hostname: Name or service not known
+I: Running cd /build/reproducible-path/libsbml-5.20.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S  > ../libsbml_5.20.4+dfsg-0.1_source.changes
 dpkg-buildpackage: info: source package libsbml
 dpkg-buildpackage: info: source version 5.20.4+dfsg-0.1
 dpkg-buildpackage: info: source distribution unstable
@@ -3639,7 +3675,7 @@
 
    To contact the developers directly, email libsbml-team@googlegroups.com
 
-   Configured on host 'codethink04-arm64'
+   Configured on host 'i-capture-the-hostname'
      host type                       = Linux
      host operating system           = Linux 6.1.0-37-cloud-arm64
      host CPU architecture           = aarch64
@@ -3692,8 +3728,8 @@
 --   Compression support is enabled for .bz2 files
 -- 
 ----------------------------------------------------------------------
--- Configuring done (15.9s)
--- Generating done (0.7s)
+-- Configuring done (5.8s)
+-- Generating done (0.3s)
 CMake Warning:
   Manually-specified variables were not used by the project:
 
@@ -53448,8 +53484,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:899: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:901: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:903: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t'
 LevelVersionConverter.cpp...
 Generating docs for file SBMLLevelVersionConverter.h...
 Generating docs for file SBMLLocalParameterConverter.cpp...
@@ -53535,7 +53569,9 @@
 Generating docs for file CompExtension.cpp...
 Generating docs for file CompExtension.h...
 Generating docs for file CompModelPlugin.cpp...
-Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:646: warning: Found unknown command '@_tc_t'
+Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:646: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:556: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:559: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:561: warning: Found unknown command '@_tcopydetails_t'
@@ -58298,63 +58334,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1330: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1331: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProduct.h:1334: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:872: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:875: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:878: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:881: warning: Found unknown command '@_treturns_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:884: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:886: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:897: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:899: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:925: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:927: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:929: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:940: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:942: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:944: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1116: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1119: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1121: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1132: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1134: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1134: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1135: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1137: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1007: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1009: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1009: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1010: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1012: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:975: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:977: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:977: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:978: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:980: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t'
 ing docs for file CompModelPlugin.h...
 Generating docs for file CompSBasePlugin.cpp...
 Generating docs for file CompSBasePlugin.h...
@@ -58442,7 +58421,64 @@
 Generating docs for file GeneAssociation.h...
 Generating docs for file GeneProduct.cpp...
 Generating docs for file GeneProduct.h...
-Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:991: warning: Found unknown command '@_tparam_t'
+Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:869: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:872: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:875: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:878: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:881: warning: Found unknown command '@_treturns_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:884: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:886: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:897: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:899: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:925: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:927: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:929: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:940: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:942: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:944: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1112: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1116: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1118: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1119: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1121: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1128: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1132: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1134: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1134: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1135: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1137: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1007: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1009: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1009: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1010: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1012: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:975: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:977: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:977: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:978: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:980: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:991: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:993: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:993: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:994: warning: Found unknown command '@_tc_t'
@@ -62554,6 +62590,12 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2250: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2220: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2235: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2265: warning: Found unknown command '@_tp_t'
 GeneProductAssociation.cpp...
 Generating docs for file GeneProductAssociation.h...
 Generating docs for file GeneProductRef.cpp...
@@ -62637,13 +62679,7 @@
 Generating docs for file GraphicalObject.cpp...
 Generating docs for file GraphicalObject.h...
 Generating docs for file Layout.cpp...
-Generating/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2250: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2220: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2235: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2265: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1847: warning: Found unknown command '@_tp_t'
+Generating/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1847: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1898: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1899: warning: Found unknown command '@_tparam_t'
@@ -102129,7 +102165,92 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:903: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:905: warning: Found unknown command '@_tcopydetails_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:907: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t'
+LevelVersionConverter.cpp...
+Generating docs for file SBMLLevelVersionConverter.h...
+Generating docs for file SBMLLocalParameterConverter.cpp...
+Generating docs for file SBMLLocalParameterConverter.h...
+Generating docs for file SBMLRateOfConverter.cpp...
+Generating docs for file SBMLRateOfConverter.h...
+Generating docs for file SBMLRateRuleConverter.cpp...
+Generating docs for file SBMLRateRuleConverter.h...
+Generating docs for file SBMLReactionConverter.cpp...
+Generating docs for file SBMLReactionConverter.h...
+Generating docs for file SBMLRuleConverter.cpp...
+Generating docs for file SBMLRuleConverter.h...
+Generating docs for file SBMLStripPackageConverter.cpp...
+Generating docs for file SBMLStripPackageConverter.h...
+Generating docs for file SBMLUnitsConverter.cpp...
+Generating docs for file SBMLUnitsConverter.h...
+Generating docs for file Delay.cpp...
+Generating docs for file Delay.h...
+Generating docs for file Event.cpp...
+Generating docs for file Event.h...
+Generating docs for file EventAssignment.cpp...
+Generating docs for file EventAssignment.h...
+Generating docs for file ExpectedAttributes.cpp...
+Generating docs for file ExpectedAttributes.h...
+Generating docs for file ASTBasePlugin.cpp...
+Generating docs for file ASTBasePlugin.h...
+Generating docs for file ISBMLExtensionNamespaces.cpp...
+Generating docs for file ISBMLExtensionNamespaces.h...
+Generating docs for file SBaseExtensionPoint.cpp...
+Generating docs for file SBaseExtensionPoint.h...
+Generating docs for file SBasePlugin.cpp...
+Generating docs for file SBasePlugin.h...
+Generating docs for file SBasePluginCreator.h...
+Generating docs for file SBasePluginCreatorBase.cpp...
+Generating docs for file SBasePluginCreatorBase.h...
+Generating docs for file SBMLDocumentPlugin.cpp...
+Generating docs for file SBMLDocumentPlugin.h...
+Generating docs for file SBMLDocumentPluginNotRequired.cpp...
+Generating docs for file SBMLDocumentPluginNotRequired.h...
+Generating docs for file SBMLExtension.cpp...
+Generating docs for file SBMLExtension.h...
+Generating docs for file SBMLExtensionException.cpp...
+Generating docs for file SBMLExtensionException.h...
+Generating docs for file SBMLExtensionNamespaces.cpp...
+Generating docs for file SBMLExtensionNamespaces.h...
+Generating docs for file SBMLExtensionRegister.h...
+Generating docs for file SBMLExtensionRegistry.cpp...
+Generating docs for file SBMLExtensionRegistry.h...
+Generating docs for file FunctionDefinition.cpp...
+Generating docs for file FunctionDefinition.h...
+Generating docs for file InitialAssignment.cpp...
+Generating docs for file InitialAssignment.h...
+Generating docs for file KineticLaw.cpp...
+Generating docs for file KineticLaw.h...
+Generating docs for file ListOf.cpp...
+Generating docs for file ListOf.h...
+Generating docs for file LocalParameter.cpp...
+Generating docs for file LocalParameter.h...
+Generating docs for file ASTNode.cpp...
+Generating docs for file ASTNode.h...
+Generating docs for file ASTNodeType.h...
+Generating docs for file DefinitionURLRegistry.cpp...
+Generating docs for file DefinitionURLRegistry.h...
+Generating docs for file FormulaFormatter.cpp...
+Generating docs for file FormulaFormatter.h...
+Generating docs for file FormulaParser.cpp...
+Generating docs for file FormulaParser.h...
+Generating docs for file FormulaTokenizer.cpp...
+Generating docs for file FormulaTokenizer.h...
+Generating docs for file L3FormulaFormatter.cpp...
+Generating docs for file L3FormulaFormatter.h...
+Generating docs for file L3Parser.cpp...
+Generating docs for file L3Parser.h...
+Generating docs for file L3ParserSettings.cpp...
+Generating docs for file L3ParserSettings.h...
+Generating docs for file MathML.cpp...
+Generating docs for file MathML.h...
+Generating docs for file Model.cpp...
+Generating docs for file Model.h...
+Generating docs for file ModifierSpeciesReference.cpp...
+Generating docs for file ModifierSpeciesReference.h...
+Generating docs for file CompExtensionTypes.h...
+Generating docs for file CompExtension.cpp...
+Generating docs for file CompExtension.h...
+Generating docs for file CompModelPlugin.cpp...
+Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:978: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:981: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:983: warning: Found unknown command '@_tcopydetails_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompModelPlugin.h:984: warning: Found unknown command '@_tli_t'
@@ -102389,92 +102510,7 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:704: warning: Found unknown command '@_tli_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:704: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:705: warning: Found unknown command '@_tli_t'
-LevelVersionConverter.cpp...
-Generating docs for file SBMLLevelVersionConverter.h...
-Generating docs for file SBMLLocalParameterConverter.cpp...
-Generating docs for file SBMLLocalParameterConverter.h...
-Generating docs for file SBMLRateOfConverter.cpp...
-Generating docs for file SBMLRateOfConverter.h...
-Generating docs for file SBMLRateRuleConverter.cpp...
-Generating docs for file SBMLRateRuleConverter.h...
-Generating docs for file SBMLReactionConverter.cpp...
-Generating docs for file SBMLReactionConverter.h...
-Generating docs for file SBMLRuleConverter.cpp...
-Generating docs for file SBMLRuleConverter.h...
-Generating docs for file SBMLStripPackageConverter.cpp...
-Generating docs for file SBMLStripPackageConverter.h...
-Generating docs for file SBMLUnitsConverter.cpp...
-Generating docs for file SBMLUnitsConverter.h...
-Generating docs for file Delay.cpp...
-Generating docs for file Delay.h...
-Generating docs for file Event.cpp...
-Generating docs for file Event.h...
-Generating docs for file EventAssignment.cpp...
-Generating docs for file EventAssignment.h...
-Generating docs for file ExpectedAttributes.cpp...
-Generating docs for file ExpectedAttributes.h...
-Generating docs for file ASTBasePlugin.cpp...
-Generating docs for file ASTBasePlugin.h...
-Generating docs for file ISBMLExtensionNamespaces.cpp...
-Generating docs for file ISBMLExtensionNamespaces.h...
-Generating docs for file SBaseExtensionPoint.cpp...
-Generating docs for file SBaseExtensionPoint.h...
-Generating docs for file SBasePlugin.cpp...
-Generating docs for file SBasePlugin.h...
-Generating docs for file SBasePluginCreator.h...
-Generating docs for file SBasePluginCreatorBase.cpp...
-Generating docs for file SBasePluginCreatorBase.h...
-Generating docs for file SBMLDocumentPlugin.cpp...
-Generating docs for file SBMLDocumentPlugin.h...
-Generating docs for file SBMLDocumentPluginNotRequired.cpp...
-Generating docs for file SBMLDocumentPluginNotRequired.h...
-Generating docs for file SBMLExtension.cpp...
-Generating docs for file SBMLExtension.h...
-Generating docs for file SBMLExtensionException.cpp...
-Generating docs for file SBMLExtensionException.h...
-Generating docs for file SBMLExtensionNamespaces.cpp...
-Generating docs for file SBMLExtensionNamespaces.h...
-Generating docs for file SBMLExtensionRegister.h...
-Generating docs for file SBMLExtensionRegistry.cpp...
-Generating docs for file SBMLExtensionRegistry.h...
-Generating docs for file FunctionDefinition.cpp...
-Generating docs for file FunctionDefinition.h...
-Generating docs for file InitialAssignment.cpp...
-Generating docs for file InitialAssignment.h...
-Generating docs for file KineticLaw.cpp...
-Generating docs for file KineticLaw.h...
-Generating docs for file ListOf.cpp...
-Generating docs for file ListOf.h...
-Generating docs for file LocalParameter.cpp...
-Generating docs for file LocalParameter.h...
-Generating docs for file ASTNode.cpp...
-Generating docs for file ASTNode.h...
-Generating docs for file ASTNodeType.h...
-Generating docs for file DefinitionURLRegistry.cpp...
-Generating docs for file DefinitionURLRegistry.h...
-Generating docs for file FormulaFormatter.cpp...
-Generating docs for file FormulaFormatter.h...
-Generating docs for file FormulaParser.cpp...
-Generating docs for file FormulaParser.h...
-Generating docs for file FormulaTokenizer.cpp...
-Generating docs for file FormulaTokenizer.h...
-Generating docs for file L3FormulaFormatter.cpp...
-Generating docs for file L3FormulaFormatter.h...
-Generating docs for file L3Parser.cpp...
-Generating docs for file L3Parser.h...
-Generating docs for file L3ParserSettings.cpp...
-Generating docs for file L3ParserSettings.h...
-Generating docs for file MathML.cpp...
-Generating docs for file MathML.h...
-Generating docs for file Model.cpp...
-Generating docs for file Model.h...
-Generating docs for file ModifierSpeciesReference.cpp...
-Generating docs for file ModifierSpeciesReference.h...
-Generating docs for file CompExtensionTypes.h...
-Generating docs for file CompExtension.cpp...
-Generating docs for file CompExtension.h...
-Generating docs for file CompModelPlugin.cpp...
-Generat/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:705: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:705: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:706: warning: Found unknown command '@_tli_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:706: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/comp/extension/CompSBasePlugin.h:708: warning: Found unknown command '@_tmemberof_t'
@@ -107093,7 +107129,94 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1003: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:971: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:987: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t'
+ing docs for file CompModelPlugin.h...
+Generating docs for file CompSBasePlugin.cpp...
+Generating docs for file CompSBasePlugin.h...
+Generating docs for file CompSBMLDocumentPlugin.cpp...
+Generating docs for file CompSBMLDocumentPlugin.h...
+Generating docs for file CompBase.cpp...
+Generating docs for file CompBase.h...
+Generating docs for file Deletion.cpp...
+Generating docs for file Deletion.h...
+Generating docs for file ExternalModelDefinition.cpp...
+Generating docs for file ExternalModelDefinition.h...
+Generating docs for file ListOfDeletions.cpp...
+Generating docs for file ListOfDeletions.h...
+Generating docs for file ListOfExternalModelDefinitions.cpp...
+Generating docs for file ListOfExternalModelDefinitions.h...
+Generating docs for file ListOfModelDefinitions.cpp...
+Generating docs for file ListOfModelDefinitions.h...
+Generating docs for file ListOfPorts.cpp...
+Generating docs for file ListOfPorts.h...
+Generating docs for file ListOfReplacedElements.cpp...
+Generating docs for file ListOfReplacedElements.h...
+Generating docs for file ListOfSubmodels.cpp...
+Generating docs for file ListOfSubmodels.h...
+Generating docs for file ModelDefinition.cpp...
+Generating docs for file ModelDefinition.h...
+Generating docs for file Port.cpp...
+Generating docs for file Port.h...
+Generating docs for file ReplacedBy.cpp...
+Generating docs for file ReplacedBy.h...
+Generating docs for file ReplacedElement.cpp...
+Generating docs for file ReplacedElement.h...
+Generating docs for file Replacing.cpp...
+Generating docs for file Replacing.h...
+Generating docs for file SBaseRef.cpp...
+Generating docs for file SBaseRef.h...
+Generating docs for file Submodel.cpp...
+Generating docs for file Submodel.h...
+Generating docs for file CompFlatteningConverter.cpp...
+Generating docs for file CompFlatteningConverter.h...
+Generating docs for file SBMLFileResolver.cpp...
+Generating docs for file SBMLFileResolver.h...
+Generating docs for file SBMLResolver.cpp...
+Generating docs for file SBMLResolver.h...
+Generating docs for file SBMLResolverRegistry.cpp...
+Generating docs for file SBMLResolverRegistry.h...
+Generating docs for file SBMLUri.cpp...
+Generating docs for file SBMLUri.h...
+Generating docs for file CompConsistencyValidator.cpp...
+Generating docs for file CompConsistencyValidator.h...
+Generating docs for file CompIdentifierConsistencyValidator.cpp...
+Generating docs for file CompIdentifierConsistencyValidator.h...
+Generating docs for file CompSBMLError.h...
+Generating docs for file CompSBMLErrorTable.h...
+Generating docs for file CompUnitConsistencyValidator.cpp...
+Generating docs for file CompUnitConsistencyValidator.h...
+Generating docs for file CompValidator.cpp...
+Generating docs for file CompValidator.h...
+Generating docs for file FbcExtensionTypes.h...
+Generating docs for file fbcfwd.h...
+Generating docs for file FbcExtension.cpp...
+Generating docs for file FbcExtension.h...
+Generating docs for file FbcModelPlugin.cpp...
+Generating docs for file FbcModelPlugin.h...
+Generating docs for file FbcReactionPlugin.cpp...
+Generating docs for file FbcReactionPlugin.h...
+Generating docs for file FbcSBasePlugin.cpp...
+Generating docs for file FbcSBasePlugin.h...
+Generating docs for file FbcSBMLDocumentPlugin.cpp...
+Generating docs for file FbcSBMLDocumentPlugin.h...
+Generating docs for file FbcSpeciesPlugin.cpp...
+Generating docs for file FbcSpeciesPlugin.h...
+Generating docs for file Association.cpp...
+Generating docs for file Association.h...
+Generating docs for file FbcAnd.cpp...
+Generating docs for file FbcAnd.h...
+Generating docs for file FbcAssociation.cpp...
+Generating docs for file FbcAssociation.h...
+Generating docs for file FbcOr.cpp...
+Generating docs for file FbcOr.h...
+Generating docs for file FluxBound.cpp...
+Generating docs for file FluxBound.h...
+Generating docs for file FluxObjective.cpp...
+Generating docs for file FluxObjective.h...
+Generating docs for file GeneAssociation.cpp...
+Generating docs for file GeneAssociation.h...
+Generating docs for file GeneProduct.cpp...
+Generating docs for file GeneProduct.h...
+Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:909: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:911: warning: Found unknown command '@_treturns_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:914: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:868: warning: Found unknown command '@_tp_t'
@@ -107189,94 +107312,7 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1103: warning: Found unknown command '@_tli_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1103: warning: Found unknown command '@_tsbmlconstant_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductAssociation.h:1105: warning: Found unknown command '@_tmemberof_t'
-ing docs for file CompModelPlugin.h...
-Generating docs for file CompSBasePlugin.cpp...
-Generating docs for file CompSBasePlugin.h...
-Generating docs for file CompSBMLDocumentPlugin.cpp...
-Generating docs for file CompSBMLDocumentPlugin.h...
-Generating docs for file CompBase.cpp...
-Generating docs for file CompBase.h...
-Generating docs for file Deletion.cpp...
-Generating docs for file Deletion.h...
-Generating docs for file ExternalModelDefinition.cpp...
-Generating docs for file ExternalModelDefinition.h...
-Generating docs for file ListOfDeletions.cpp...
-Generating docs for file ListOfDeletions.h...
-Generating docs for file ListOfExternalModelDefinitions.cpp...
-Generating docs for file ListOfExternalModelDefinitions.h...
-Generating docs for file ListOfModelDefinitions.cpp...
-Generating docs for file ListOfModelDefinitions.h...
-Generating docs for file ListOfPorts.cpp...
-Generating docs for file ListOfPorts.h...
-Generating docs for file ListOfReplacedElements.cpp...
-Generating docs for file ListOfReplacedElements.h...
-Generating docs for file ListOfSubmodels.cpp...
-Generating docs for file ListOfSubmodels.h...
-Generating docs for file ModelDefinition.cpp...
-Generating docs for file ModelDefinition.h...
-Generating docs for file Port.cpp...
-Generating docs for file Port.h...
-Generating docs for file ReplacedBy.cpp...
-Generating docs for file ReplacedBy.h...
-Generating docs for file ReplacedElement.cpp...
-Generating docs for file ReplacedElement.h...
-Generating docs for file Replacing.cpp...
-Generating docs for file Replacing.h...
-Generating docs for file SBaseRef.cpp...
-Generating docs for file SBaseRef.h...
-Generating docs for file Submodel.cpp...
-Generating docs for file Submodel.h...
-Generating docs for file CompFlatteningConverter.cpp...
-Generating docs for file CompFlatteningConverter.h...
-Generating docs for file SBMLFileResolver.cpp...
-Generating docs for file SBMLFileResolver.h...
-Generating docs for file SBMLResolver.cpp...
-Generating docs for file SBMLResolver.h...
-Generating docs for file SBMLResolverRegistry.cpp...
-Generating docs for file SBMLResolverRegistry.h...
-Generating docs for file SBMLUri.cpp...
-Generating docs for file SBMLUri.h...
-Generating docs for file CompConsistencyValidator.cpp...
-Generating docs for file CompConsistencyValidator.h...
-Generating docs for file CompIdentifierConsistencyValidator.cpp...
-Generating docs for file CompIdentifierConsistencyValidator.h...
-Generating docs for file CompSBMLError.h...
-Generating docs for file CompSBMLErrorTable.h...
-Generating docs for file CompUnitConsistencyValidator.cpp...
-Generating docs for file CompUnitConsistencyValidator.h...
-Generating docs for file CompValidator.cpp...
-Generating docs for file CompValidator.h...
-Generating docs for file FbcExtensionTypes.h...
-Generating docs for file fbcfwd.h...
-Generating docs for file FbcExtension.cpp...
-Generating docs for file FbcExtension.h...
-Generating docs for file FbcModelPlugin.cpp...
-Generating docs for file FbcModelPlugin.h...
-Generating docs for file FbcReactionPlugin.cpp...
-Generating docs for file FbcReactionPlugin.h...
-Generating docs for file FbcSBasePlugin.cpp...
-Generating docs for file FbcSBasePlugin.h...
-Generating docs for file FbcSBMLDocumentPlugin.cpp...
-Generating docs for file FbcSBMLDocumentPlugin.h...
-Generating docs for file FbcSpeciesPlugin.cpp...
-Generating docs for file FbcSpeciesPlugin.h...
-Generating docs for file Association.cpp...
-Generating docs for file Association.h...
-Generating docs for file FbcAnd.cpp...
-Generating docs for file FbcAnd.h...
-Generating docs for file FbcAssociation.cpp...
-Generating docs for file FbcAssociation.h...
-Generating docs for file FbcOr.cpp...
-Generating docs for file FbcOr.h...
-Generating docs for file FluxBound.cpp...
-Generating docs for file FluxBound.h...
-Generating docs for file FluxObjective.cpp...
-Generating docs for file FluxObjective.h...
-Generating docs for file GeneAssociation.cpp...
-Generating docs for file GeneAssociation.h...
-Generating docs for file GeneProduct.cpp...
-Generating docs for file GeneProduct.h...
-Generating docs for file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:674: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:674: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:675: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:675: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/fbc/sbml/GeneProductRef.h:952: warning: Found unknown command '@_tc_t'
@@ -111332,6 +111368,36 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2250: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2220: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2235: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2265: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1847: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1898: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1899: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1901: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1862: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1863: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1865: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1886: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1887: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1889: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1874: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1875: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1877: warning: Found unknown command '@_tmemberof_t'
 GeneProductAssociation.cpp...
 Generating docs for file GeneProductAssociation.h...
 Generating docs for file GeneProductRef.cpp...
@@ -111416,36 +111482,6 @@
 Generating docs for file GraphicalObject.h...
 Generating docs for file Layout.cpp...
 Generating/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2396: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1789: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1790: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1778: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2410: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2280: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2205: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2250: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2220: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2235: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:2265: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1847: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1895: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1898: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1899: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1901: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1859: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1862: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1863: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1865: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1883: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1886: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1887: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1889: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1871: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1874: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1875: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1877: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1907: warning: Found unknown command '@_tp_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1910: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1911: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/layout/sbml/Layout.h:1913: warning: Found unknown command '@_tmemberof_t'
@@ -115855,10 +115891,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:1101: warning: Found unknown command '@_tcopydetails_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.h:1103: warning: Found unknown command '@_tmemberof_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:53: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t'
  docs for file Layout.h...
 Generating docs for file LineSegment.cpp...
 Generating docs for file LineSegment.h...
@@ -115938,7 +115970,11 @@
 Generating docs for file MultiConsistencyValidator.cpp...
 Generating docs for file MultiConsistencyValidator.h...
 Generating docs for file MultiIdentifierConsistencyValidator.cpp...
-Generating docs for file MultiIdentifierConsistencyValid/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
+Generating docs for file MultiIdentifierConsistencyValid/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:46: warning: Found unknown command '@_tenum_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLError.h:53: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/validator/MultiSBMLErrorTable.h:44: warning: Found unknown command '@_tcond_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:360: warning: Found unknown command '@_tenum_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:361: warning: Found unknown command '@_tbrief_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_tldquo_t; found
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h:362: warning: Unsupported symbol &_trdquo_t; found
@@ -126968,39 +127004,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1737: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1754: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2021: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1992: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2180: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2181: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2183: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2183: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2183: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2186: warning: Found unknown command '@_tsee_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2188: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2200: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2201: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2203: warning: Found unknown command '@_treturn_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2204: warning: Found unknown command '@_tp_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2206: warning: Found unknown command '@_tsee_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2208: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1884: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1885: warning: Found unknown command '@_tparam_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1887: warning: Found unknown command '@_tcopydetails_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1888: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1888: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1889: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1889: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1890: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1890: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1891: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1891: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1892: warning: Found unknown command '@_tli_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1892: warning: Found unknown command '@_tsbmlconstant_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1894: warning: Found unknown command '@_tmemberof_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2077: warning: Found unknown command '@_tc_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2082: warning: Found unknown command '@_tem_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2085: warning: Found unknown command '@_tif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2085: warning: Found unknown command '@_tendif_t'
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2088: warning: Found unknown command '@_tparam_t'
 ator.h...
 Generating docs for file MultiMathMLConsistencyValidator.cpp...
 Generating docs for file MultiMathMLConsistencyValidator.h...
@@ -127092,7 +127095,40 @@
 Generating docs for file Unit.cpp...
 Generating docs for file Unit.h...
 Generating docs for file UnitDefinition.cpp...
-Generating docs for f/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2090: warning: Found unknown command '@_tparam_t'
+Generating docs for f/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1992: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2180: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2181: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2183: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2183: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2183: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2186: warning: Found unknown command '@_tsee_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2188: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2200: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2201: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2203: warning: Found unknown command '@_treturn_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2204: warning: Found unknown command '@_tp_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2206: warning: Found unknown command '@_tsee_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2208: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1884: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1885: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1887: warning: Found unknown command '@_tcopydetails_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1888: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1888: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1889: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1889: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1890: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1890: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1891: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1891: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1892: warning: Found unknown command '@_tli_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1892: warning: Found unknown command '@_tsbmlconstant_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:1894: warning: Found unknown command '@_tmemberof_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2077: warning: Found unknown command '@_tc_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2082: warning: Found unknown command '@_tem_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2085: warning: Found unknown command '@_tif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2085: warning: Found unknown command '@_tendif_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2088: warning: Found unknown command '@_tparam_t'
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2090: warning: Found unknown command '@_tparam_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2092: warning: Found unknown command '@_treturn_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2092: warning: Found unknown command '@_tc_t'
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/UnitDefinition.h:2092: warning: Found unknown command '@_tp_t'
@@ -146821,6 +146857,7 @@
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h...
 Pa/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.cpp:413: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp:969: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
 rsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SpeciesTypeInstance.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/multi/sbml/SubListOfSpeciesFeatures.cpp...
@@ -146855,8 +146892,7 @@
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualExtension.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp...
-Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h:126: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
-/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:944: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
+Parsing file /build/reproducible-path/libsbml-5.20./build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.cpp:944: warning: Conditional section with label 'doxygenLibsbmlInternal' does not have a corresponding \endcond command within this file.
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/sbml/Transition.h:1242: warning: the \endcond does not have a corresponding \cond in this file
 4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.cpp...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/extension/QualModelPlugin.h...
@@ -154284,27 +154320,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:293: warning: included file convertFbcToCobra.py is not found. Check your EXAMPLE_PATH
 -path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-news.txt...
@@ -154391,7 +154406,28 @@
 Generating docs for example callExternalValidator.py...
 Generating docs for example convertSBML.py...
 Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:295: warning: included file promoteParameters.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:293: warning: included file convertFbcToCobra.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:295: warning: included file promoteParameters.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:300: warning: included file convertLayout.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:302: warning: included file example1.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:305: warning: included file example1-L3.py is not found. Check your EXAMPLE_PATH
@@ -155886,25 +155922,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:222: warning: included file callExternalValidator.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:225: warning: included file convertSBML.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:228: warning: included file createExampleSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH
 -path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-math.txt...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-news.txt...
@@ -155991,7 +156008,26 @@
 Generating docs for example callExternalValidator.py...
 Generating docs for example convertSBML.py...
 Generating docs for example createExampleSBML.py...
-Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH
+Generating docs fo/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:231: warning: included file echoSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:236: warning: included file getAllElementsWithNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:238: warning: included file printAnnotation.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:241: warning: included file printMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:244: warning: included file printNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:247: warning: included file printRegisteredPackages.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:250: warning: included file printSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:253: warning: included file printSupported.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:256: warning: included file printUnits.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:259: warning: included file readSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:263: warning: included file setIdFromNames.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:266: warning: included file stripPackage.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:269: warning: included file translateMath.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:272: warning: included file unsetAnnotation.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:275: warning: included file unsetNotes.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:276: warning: included file validateSBML.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:278: warning: included file groups_example1.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:280: warning: included file flattenModel.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:285: warning: included file fbc_example1.py is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:289: warning: included file convertCobraToFbc.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:293: warning: included file convertFbcToCobra.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:295: warning: included file promoteParameters.py is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-python-example-files.txt:300: warning: included file convertLayout.py is not found. Check your EXAMPLE_PATH
@@ -162142,25 +162178,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:378: warning: included file promoteParameters.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:383: warning: included file setNamesFromIds.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:387: warning: included file addLayout.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:391: warning: included file convertLayout.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:393: warning: included file example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:396: warning: included file example1-L3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:399: warning: included file example2.cpp is not found. Check your EXAMPLE_PATH
 l/packages/qual/validator/QualSBMLError.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -162255,7 +162272,26 @@
 Generating docs for example translateMath.cpp...
 Generating docs for example unsetAnnotation.cpp...
 Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:402: warning: included file example2-L3.cpp is not found. Check your EXAMPLE_PATH
+Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:378: warning: included file promoteParameters.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:383: warning: included file setNamesFromIds.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:387: warning: included file addLayout.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:391: warning: included file convertLayout.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:393: warning: included file example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:396: warning: included file example1-L3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:399: warning: included file example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:402: warning: included file example2-L3.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:405: warning: included file example3.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:408: warning: included file example3-L3.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:411: warning: included file qual_example1.cpp is not found. Check your EXAMPLE_PATH
@@ -174691,29 +174727,6 @@
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:330: warning: included file translateMath.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:333: warning: included file unsetAnnotation.cpp is not found. Check your EXAMPLE_PATH
 /build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:336: warning: included file unsetNotes.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:378: warning: included file promoteParameters.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:383: warning: included file setNamesFromIds.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:387: warning: included file addLayout.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:391: warning: included file convertLayout.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:393: warning: included file example1.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:396: warning: included file example1-L3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:399: warning: included file example2.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:402: warning: included file example2-L3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:405: warning: included file example3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:408: warning: included file example3-L3.cpp is not found. Check your EXAMPLE_PATH
-/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:411: warning: included file qual_example1.cpp is not found. Check your EXAMPLE_PATH
 l/packages/qual/validator/QualSBMLError.h...
 Preprocessing /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
 Parsing file /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/packages/qual/validator/QualSBMLErrorTable.h...
@@ -174808,7 +174821,30 @@
 Generating docs for example translateMath.cpp...
 Generating docs for example unsetAnnotation.cpp...
 Generating docs for example unsetNotes.cpp...
-Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:317: warning: End of list marker found without any preceding list items
+Generating docs for example va/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:337: warning: included file validateSBML.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:339: warning: included file flattenModel.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:342: warning: included file spec_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:345: warning: included file spec_example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:348: warning: included file spec_example3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:351: warning: included file spec_example4.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:356: warning: included file fbc_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:360: warning: included file convertCobraToFbc.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:364: warning: included file convertFbcToCobra.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:368: warning: included file groups_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:372: warning: included file groups_example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:376: warning: included file SBMLHttpResolverExample.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:378: warning: included file promoteParameters.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:383: warning: included file setNamesFromIds.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:387: warning: included file addLayout.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:391: warning: included file convertLayout.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:393: warning: included file example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:396: warning: included file example1-L3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:399: warning: included file example2.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:402: warning: included file example2-L3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:405: warning: included file example3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:408: warning: included file example3-L3.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/docs/src/libsbml-example-files.txt:411: warning: included file qual_example1.cpp is not found. Check your EXAMPLE_PATH
+/build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:317: warning: End of list marker found without any preceding list items
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1387: warning: End of list marker found without any preceding list items
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1390: warning: End of list marker found without any preceding list items
 /build/reproducible-path/libsbml-5.20.4+dfsg/src/sbml/annotation/CVTerm.h:1364: warning: End of list marker found without any preceding list items
@@ -177416,7 +177452,7 @@
 1:  TestMultipleNamespaces
 1:  SBMLCompCheckConsistency
 1: 100%: Checks: 14, Failures: 0, Errors: 0
- 1/65 Test  #1: test_comp_extensions_run ......................   Passed    0.42 sec
+ 1/65 Test  #1: test_comp_extensions_run ......................   Passed    0.51 sec
 test 2
       Start  2: test_comp_sbase_run
 
@@ -177437,7 +177473,7 @@
 2:  comp_sBaseRef
 2:  comp_submodel
 2: 100%: Checks: 105, Failures: 0, Errors: 0
- 2/65 Test  #2: test_comp_sbase_run ...........................   Passed    0.33 sec
+ 2/65 Test  #2: test_comp_sbase_run ...........................   Passed    0.38 sec
 test 3
       Start  3: test_comp_util_run
 
@@ -177455,7 +177491,7 @@
 3:  SBMLCompFlatteningNewFlags
 3:  SBMLCompFlatteningConverterStripPackage
 3: 100%: Checks: 365, Failures: 0, Errors: 0
- 3/65 Test  #3: test_comp_util_run ............................   Passed    3.01 sec
+ 3/65 Test  #3: test_comp_util_run ............................   Passed    4.63 sec
 test 4
       Start  4: test_comp_validator_run
 
@@ -177475,7 +177511,7 @@
 4: 100%: Checks: 14, Failures: 0
 4: Testing Unit Consistency Constraints (10500 - 10599).
 4: 100%: Checks: 22, Failures: 0
- 4/65 Test  #4: test_comp_validator_run .......................   Passed    0.40 sec
+ 4/65 Test  #4: test_comp_validator_run .......................   Passed    0.73 sec
 test 5
       Start  5: test_sbml_package_fbc_run
 
@@ -177489,7 +177525,7 @@
 5:  ReadFbcExtension
 5:  FbcAssociation
 5: 100%: Checks: 38, Failures: 0, Errors: 0
- 5/65 Test  #5: test_sbml_package_fbc_run .....................   Passed    0.32 sec
+ 5/65 Test  #5: test_sbml_package_fbc_run .....................   Passed    0.52 sec
 test 6
       Start  6: test_fbc_validator_run
 
@@ -177507,7 +177543,7 @@
 6: 100%: Checks: 248, Failures: 0
 6: Testing Id Consistency Constraints (10300 - 10399).
 6: 100%: Checks: 13, Failures: 0
- 6/65 Test  #6: test_fbc_validator_run ........................   Passed    0.47 sec
+ 6/65 Test  #6: test_fbc_validator_run ........................   Passed    0.41 sec
 test 7
       Start  7: test_extension_package_groups_run
 
@@ -177521,7 +177557,7 @@
 7:  ReadGroupsExtension
 7:  GroupsModelPlugin
 7: 100%: Checks: 25, Failures: 0, Errors: 0
- 7/65 Test  #7: test_extension_package_groups_run .............   Passed    0.18 sec
+ 7/65 Test  #7: test_extension_package_groups_run .............   Passed    1.23 sec
 test 8
       Start  8: test_groups_validator_run
 
@@ -177539,7 +177575,7 @@
 8: 100%: Checks: 95, Failures: 0
 8: Testing Id Consistency Constraints (10300 - 10399).
 8: 100%: Checks: 11, Failures: 0
- 8/65 Test  #8: test_groups_validator_run .....................   Passed    0.16 sec
+ 8/65 Test  #8: test_groups_validator_run .....................   Passed    0.37 sec
 test 9
       Start  9: test_l3v2extendedmath_validator_run
 
@@ -177571,7 +177607,7 @@
 10:  ReadL3v2EMExtension
 10:  ReadWriteL3v2Infix
 10: 100%: Checks: 18, Failures: 0, Errors: 0
-10/65 Test #10: test_extension_package_l3v2extendedmath_run ...   Passed    0.15 sec
+10/65 Test #10: test_extension_package_l3v2extendedmath_run ...   Passed    0.14 sec
 test 11
       Start 11: test_sbml_package_layout_run
 
@@ -177600,7 +177636,7 @@
 11:  SBMLHandler
 11:  LayoutWriting
 11: 100%: Checks: 288, Failures: 0, Errors: 0
-11/65 Test #11: test_sbml_package_layout_run ..................   Passed    0.87 sec
+11/65 Test #11: test_sbml_package_layout_run ..................   Passed    0.88 sec
 test 12
       Start 12: test_layout_validator_run
 
@@ -177618,7 +177654,7 @@
 12: 100%: Checks: 223, Failures: 0
 12: Testing Id Consistency Constraints (10300 - 10399).
 12: 100%: Checks: 18, Failures: 0
-12/65 Test #12: test_layout_validator_run .....................   Passed    0.53 sec
+12/65 Test #12: test_layout_validator_run .....................   Passed    1.17 sec
 test 13
       Start 13: test_extension_package_qual_run
 
@@ -177632,7 +177668,7 @@
 13:  ReadQualExtension
 13:  GetAllElements
 13: 100%: Checks: 20, Failures: 0, Errors: 0
-13/65 Test #13: test_extension_package_qual_run ...............   Passed    0.17 sec
+13/65 Test #13: test_extension_package_qual_run ...............   Passed    0.14 sec
 test 14
       Start 14: test_sbml_package_qual_run
 
@@ -177650,7 +177686,7 @@
 14:  ListOfFunctionTerms
 14:  CopyAndClone
 14: 100%: Checks: 73, Failures: 0, Errors: 0
-14/65 Test #14: test_sbml_package_qual_run ....................   Passed    0.20 sec
+14/65 Test #14: test_sbml_package_qual_run ....................   Passed    0.23 sec
 test 15
       Start 15: test_qual_validator_run
 
@@ -177670,7 +177706,7 @@
 15: 100%: Checks: 4, Failures: 0
 15: Testing Math Consistency Constraints (10200 - 10299).
 15: 100%: Checks: 3, Failures: 0
-15/65 Test #15: test_qual_validator_run .......................   Passed    0.23 sec
+15/65 Test #15: test_qual_validator_run .......................   Passed    0.25 sec
 test 16
       Start 16: test_sbml_package_render_run
 
@@ -177709,7 +177745,7 @@
 16:  RenderReading
 16:  RenderWriting
 16: 100%: Checks: 136, Failures: 0, Errors: 0
-16/65 Test #16: test_sbml_package_render_run ..................   Passed    1.01 sec
+16/65 Test #16: test_sbml_package_render_run ..................   Passed    1.08 sec
 test 17
       Start 17: test_render_validator_run
 
@@ -177725,7 +177761,7 @@
 17: 
 17: Testing General XML Consistency Constraints (20000 - 29999).
 17: 100%: Checks: 111, Failures: 0
-17/65 Test #17: test_render_validator_run .....................   Passed    0.19 sec
+17/65 Test #17: test_render_validator_run .....................   Passed    0.25 sec
 test 18
       Start 18: test_sbml_annotation_run
 
@@ -177752,7 +177788,7 @@
 18:  RDFAnnotationV4
 18:  UnusualRDFAnnotation
 18: 100%: Checks: 193, Failures: 0, Errors: 0
-18/65 Test #18: test_sbml_annotation_run ......................   Passed    0.75 sec
+18/65 Test #18: test_sbml_annotation_run ......................   Passed    0.87 sec
 test 19
       Start 19: test_sbml_conversion_run
 
@@ -177774,7 +177810,7 @@
 19:  RateOfConverter
 19:  SBMLRateRuleConverter
 19: 100%: Checks: 188, Failures: 0, Errors: 0
-19/65 Test #19: test_sbml_conversion_run ......................   Passed    1.09 sec
+19/65 Test #19: test_sbml_conversion_run ......................   Passed    1.50 sec
 test 20
       Start 20: test_sbml_extension_run
 
@@ -177793,7 +177829,7 @@
 20:  SBMLExtensionRegistry
 20:  TestUnknownPackages
 20: 100%: Checks: 30, Failures: 0, Errors: 0
-20/65 Test #20: test_sbml_extension_run .......................   Passed    0.13 sec
+20/65 Test #20: test_sbml_extension_run .......................   Passed    0.16 sec
 test 21
       Start 21: test_sbml_math_run
 
@@ -177821,7 +177857,7 @@
 21:  TestInferRnFunctions
 21:  TestDerivFunctions
 21: 100%: Checks: 739, Failures: 0, Errors: 0
-21/65 Test #21: test_sbml_math_run ............................   Passed    2.04 sec
+21/65 Test #21: test_sbml_math_run ............................   Passed    1.62 sec
 test 22
       Start 22: test_sbml_sbml_run
 
@@ -177937,7 +177973,7 @@
 22:  SBaseIdName
 22:  Generic Attribute Functions
 22: 100%: Checks: 1746, Failures: 0, Errors: 0
-22/65 Test #22: test_sbml_sbml_run ............................   Passed    4.82 sec
+22/65 Test #22: test_sbml_sbml_run ............................   Passed    5.05 sec
 test 23
       Start 23: test_sbml_units_run
 
@@ -177958,7 +177994,7 @@
 23:  UnitFormulaFormatter3
 23:  DerivedUnitDefinitionUndefined
 23: 100%: Checks: 178, Failures: 0, Errors: 0
-23/65 Test #23: test_sbml_units_run ...........................   Passed    1.21 sec
+23/65 Test #23: test_sbml_units_run ...........................   Passed    1.23 sec
 test 24
       Start 24: test_sbml_util_run
 
@@ -178048,7 +178084,7 @@
 25: 100%: Checks: 30, Failures: 0
 25: Testing Modeling Practice Constraints (80000 - 89999).
 25: 100%: Checks: 56, Failures: 0
-25/65 Test #25: test_sbml_validator_run .......................   Passed    3.89 sec
+25/65 Test #25: test_sbml_validator_run .......................   Passed    2.96 sec
 test 26
       Start 26: test_sbml_xml_run
 
@@ -178070,11 +178106,11 @@
 26:  XMLErrorLog
 26:  XMLInputStream
 26:  XMLOutputStream
-26: <!-- Created by foo version bar on 2025-07-28 08:25 with libSBML version 5.20.4. -->
+26: <!-- Created by foo version bar on 2026-08-31 18:44 with libSBML version 5.20.4. -->
 26:  XMLAttributesC
 26:  XMLExceptions
 26: 100%: Checks: 131, Failures: 0, Errors: 0
-26/65 Test #26: test_sbml_xml_run .............................   Passed    0.24 sec
+26/65 Test #26: test_sbml_xml_run .............................   Passed    0.33 sec
 test 27
       Start 27: test_java_binding
 
@@ -178083,8 +178119,8 @@
 27: Environment variables: 
 27:  LD_LIBRARY_PATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/java:
 27: Test timeout computed to be: 3000
-27: ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
-27/65 Test #27: test_java_binding .............................   Passed    1.14 sec
+27: .............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
+27/65 Test #27: test_java_binding .............................   Passed    1.22 sec
 test 28
       Start 28: test_java_printversion
 
@@ -178092,7 +178128,7 @@
 28: Working Directory: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/java
 28: Test timeout computed to be: 3000
 28: .
-28/65 Test #28: test_java_printversion ........................   Passed    0.13 sec
+28/65 Test #28: test_java_printversion ........................   Passed    0.19 sec
 test 29
       Start 29: test_perl_binding
 
@@ -178143,9 +178179,9 @@
 29: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/perl/t/07__TestModelHistory.t .......... ok
 29: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/perl/t/07__TestRDFAnnotation2.t ........ ok
 29: All tests successful.
-29: Files=41, Tests=3364,  5 wallclock secs ( 0.27 usr  0.06 sys +  4.12 cusr  0.69 csys =  5.14 CPU)
+29: Files=41, Tests=3364,  7 wallclock secs ( 0.35 usr  0.10 sys +  5.79 cusr  0.90 csys =  7.14 CPU)
 29: Result: PASS
-29/65 Test #29: test_perl_binding .............................   Passed    5.59 sec
+29/65 Test #29: test_perl_binding .............................   Passed    7.28 sec
 test 30
       Start 30: test_python_binding
 
@@ -178158,13 +178194,13 @@
 30:   re_libxml = re.compile('^ USE_LIBXML  \s* = \s* 1', re.X)
 30: /build/reproducible-path/libsbml-5.20.4+dfsg/src/bindings/python/test/sbml/TestReadSBML.py:51: SyntaxWarning: invalid escape sequence '\s'
 30:   re_xerces = re.compile('^ USE_XERCES  \s* = \s* 1', re.X)
-30: ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2025-07-28 08:25 with libSBML version 5.20.4. -->
+30: ...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................<!-- Created by foo version bar on 2026-08-31 18:44 with libSBML version 5.20.4. -->
 30: ................................................................................................................................................................................................................................................................................................................................................................................................................
 30: ----------------------------------------------------------------------
-30: Ran 1819 tests in 0.290s
+30: Ran 1819 tests in 0.287s
 30: 
 30: OK
-30/65 Test #30: test_python_binding ...........................   Passed    1.15 sec
+30/65 Test #30: test_python_binding ...........................   Passed    1.32 sec
 test 31
       Start 31: test_python_printversion
 
@@ -178182,7 +178218,7 @@
 32: Environment variables: 
 32:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 32: Test timeout computed to be: 3000
-32/65 Test #32: test_python_addCVTerms ........................   Passed    0.19 sec
+32/65 Test #32: test_python_addCVTerms ........................   Passed    0.15 sec
 test 33
       Start 33: test_python_addingEvidenceCodes_1
 
@@ -178191,7 +178227,7 @@
 33: Environment variables: 
 33:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 33: Test timeout computed to be: 3000
-33/65 Test #33: test_python_addingEvidenceCodes_1 .............   Passed    0.14 sec
+33/65 Test #33: test_python_addingEvidenceCodes_1 .............   Passed    0.20 sec
 test 34
       Start 34: test_python_addingEvidenceCodes_2
 
@@ -178200,7 +178236,7 @@
 34: Environment variables: 
 34:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 34: Test timeout computed to be: 3000
-34/65 Test #34: test_python_addingEvidenceCodes_2 .............   Passed    0.21 sec
+34/65 Test #34: test_python_addingEvidenceCodes_2 .............   Passed    0.16 sec
 test 35
       Start 35: test_python_addModelHistory
 
@@ -178213,7 +178249,7 @@
 35: Set created date:      succeeded
 35: Set modified date:     succeeded
 35: Set model history:     unknown
-35/65 Test #35: test_python_addModelHistory ...................   Passed    0.16 sec
+35/65 Test #35: test_python_addModelHistory ...................   Passed    0.20 sec
 test 36
       Start 36: test_python_append_to_note
 
@@ -178230,7 +178266,7 @@
 36: Body after change: 
 36: <body xmlns="http://www.w3.org/1999/xhtml">
 36:   <p xmlns="http://www.w3.org/1999/xhtml">Some notes</p>a new note</body>
-36/65 Test #36: test_python_append_to_note ....................   Passed    0.26 sec
+36/65 Test #36: test_python_append_to_note ....................   Passed    0.21 sec
 test 37
       Start 37: test_python_appendAnnotation
 
@@ -178239,7 +178275,7 @@
 37: Environment variables: 
 37:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 37: Test timeout computed to be: 3000
-37/65 Test #37: test_python_appendAnnotation ..................   Passed    0.28 sec
+37/65 Test #37: test_python_appendAnnotation ..................   Passed    0.20 sec
 test 38
       Start 38: test_python_convertSBML
 
@@ -178252,7 +178288,7 @@
 38: 
 38: Conversion completed.
 38: 
-38/65 Test #38: test_python_convertSBML .......................   Passed    0.33 sec
+38/65 Test #38: test_python_convertSBML .......................   Passed    0.15 sec
 test 39
       Start 39: test_python_createExampleSBML
 
@@ -178270,7 +178306,7 @@
 39: Notice: encountered 1 validation warning in model 'functionExample'.
 39: 
 39: Wrote file 'functiondef.xml'
-39/65 Test #39: test_python_createExampleSBML .................   Passed    0.31 sec
+39/65 Test #39: test_python_createExampleSBML .................   Passed    0.21 sec
 test 40
       Start 40: test_python_createSimpleModel
 
@@ -178322,7 +178358,7 @@
 40:   </model>
 40: </sbml>
 40: 
-40/65 Test #40: test_python_createSimpleModel .................   Passed    0.26 sec
+40/65 Test #40: test_python_createSimpleModel .................   Passed    0.20 sec
 test 41
       Start 41: test_python_echoSBML
 
@@ -178332,7 +178368,7 @@
 41:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 41: Test timeout computed to be: 3000
 41: [OK] Echoed /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml to echoSBML.out.xml
-41/65 Test #41: test_python_echoSBML ..........................   Passed    0.26 sec
+41/65 Test #41: test_python_echoSBML ..........................   Passed    0.14 sec
 test 42
       Start 42: test_python_evaluateCustomMath
 
@@ -178342,7 +178378,7 @@
 42:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 42: Test timeout computed to be: 3000
 42: 2*3+4 = 10.0
-42/65 Test #42: test_python_evaluateCustomMath ................   Passed    0.34 sec
+42/65 Test #42: test_python_evaluateCustomMath ................   Passed    0.19 sec
 test 43
       Start 43: test_python_getAllElementsWithNotes
 
@@ -178353,11 +178389,11 @@
 43: Test timeout computed to be: 3000
 43: 
 43:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-43:       read time (ms): 0.847900390625
+43:       read time (ms): 0.9072265625
 43:     searching ......:
-43:     search time (ms): 0.1298828125
+43:     search time (ms): 0.142333984375
 43:  elements with notes: 0
-43/65 Test #43: test_python_getAllElementsWithNotes ...........   Passed    0.27 sec
+43/65 Test #43: test_python_getAllElementsWithNotes ...........   Passed    0.20 sec
 test 44
       Start 44: test_python_inlineInitialAssignments
 
@@ -178366,7 +178402,7 @@
 44: Environment variables: 
 44:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 44: Test timeout computed to be: 3000
-44/65 Test #44: test_python_inlineInitialAssignments ..........   Passed    0.32 sec
+44/65 Test #44: test_python_inlineInitialAssignments ..........   Passed    0.15 sec
 test 45
       Start 45: test_python_printAnnotation
 
@@ -178377,7 +178413,7 @@
 45: Test timeout computed to be: 3000
 45: filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 45: 
-45/65 Test #45: test_python_printAnnotation ...................   Passed    0.27 sec
+45/65 Test #45: test_python_printAnnotation ...................   Passed    0.21 sec
 test 46
       Start 46: test_python_printMath
 
@@ -178393,7 +178429,7 @@
 46: 
 46: 
 46: 
-46/65 Test #46: test_python_printMath .........................   Passed    0.28 sec
+46/65 Test #46: test_python_printMath .........................   Passed    0.16 sec
 test 47
       Start 47: test_python_printRegisteredPackages
 
@@ -178413,7 +178449,7 @@
 47: 	qual
 47: 
 47: 
-47/65 Test #47: test_python_printRegisteredPackages ...........   Passed    0.27 sec
+47/65 Test #47: test_python_printRegisteredPackages ...........   Passed    0.20 sec
 test 48
       Start 48: test_python_printSBML
 
@@ -178439,7 +178475,7 @@
 48:              events: 0
 48: 
 48: 
-48/65 Test #48: test_python_printSBML .........................   Passed    0.58 sec
+48/65 Test #48: test_python_printSBML .........................   Passed    0.15 sec
 test 49
       Start 49: test_python_printsupported
 
@@ -178460,7 +178496,7 @@
 49: 	SBML Level: 3 Version: 1
 49: 	SBML Level: 3 Version: 2
 49: 
-49/65 Test #49: test_python_printsupported ....................   Passed    0.25 sec
+49/65 Test #49: test_python_printsupported ....................   Passed    0.14 sec
 test 50
       Start 50: test_python_printUnits
 
@@ -178480,7 +178516,7 @@
 50: Reaction 1: 
 50: Kinetic Law: second (exponent = -1, multiplier = 1, scale = 0), mole (exponent = 1, multiplier = 1, scale = 0)
 50:         undeclared units: no
-50/65 Test #50: test_python_printUnits ........................   Passed    0.26 sec
+50/65 Test #50: test_python_printUnits ........................   Passed    0.14 sec
 test 51
       Start 51: test_python_promoteParameters
 
@@ -178490,7 +178526,7 @@
 51:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 51: Test timeout computed to be: 3000
 51: [OK] wrote promoteParameters.out.xml
-51/65 Test #51: test_python_promoteParameters .................   Passed    0.26 sec
+51/65 Test #51: test_python_promoteParameters .................   Passed    0.20 sec
 test 52
       Start 52: test_python_readSBML
 
@@ -178502,10 +178538,10 @@
 52: 
 52:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 52:            file size: 3930
-52:       read time (ms): 1.018524169921875
+52:       read time (ms): 1.064300537109375
 52:  validation error(s): 0
 52: 
-52/65 Test #52: test_python_readSBML ..........................   Passed    0.28 sec
+52/65 Test #52: test_python_readSBML ..........................   Passed    0.16 sec
 test 53
       Start 53: test_python_replaceOneFD
 
@@ -178514,7 +178550,7 @@
 53: Environment variables: 
 53:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 53: Test timeout computed to be: 3000
-53/65 Test #53: test_python_replaceOneFD ......................   Passed    0.16 sec
+53/65 Test #53: test_python_replaceOneFD ......................   Passed    0.19 sec
 test 54
       Start 54: test_python_setIdFromNames
 
@@ -178525,11 +178561,11 @@
 54: Test timeout computed to be: 3000
 54: 
 54:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-54:       read time (ms): 0.95654296875
-54:     rename time (ms): 0.095458984375
-54:      write time (ms): 0.3251953125
+54:       read time (ms): 0.915283203125
+54:     rename time (ms): 0.101806640625
+54:      write time (ms): 0.287353515625
 54: 
-54/65 Test #54: test_python_setIdFromNames ....................   Passed    0.36 sec
+54/65 Test #54: test_python_setIdFromNames ....................   Passed    0.20 sec
 test 55
       Start 55: test_python_setNamesFromIds
 
@@ -178540,11 +178576,11 @@
 55: Test timeout computed to be: 3000
 55: 
 55:             filename: /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
-55:       read time (ms): 0.914794921875
-55:     rename time (ms): 0.20166015625
-55:      write time (ms): 0.318603515625
+55:       read time (ms): 1.026611328125
+55:     rename time (ms): 0.232666015625
+55:      write time (ms): 0.30224609375
 55: 
-55/65 Test #55: test_python_setNamesFromIds ...................   Passed    0.26 sec
+55/65 Test #55: test_python_setNamesFromIds ...................   Passed    0.20 sec
 test 56
       Start 56: test_python_unsetAnnotation
 
@@ -178553,7 +178589,7 @@
 56: Environment variables: 
 56:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 56: Test timeout computed to be: 3000
-56/65 Test #56: test_python_unsetAnnotation ...................   Passed    0.29 sec
+56/65 Test #56: test_python_unsetAnnotation ...................   Passed    0.19 sec
 test 57
       Start 57: test_python_unsetNotes
 
@@ -178562,7 +178598,7 @@
 57: Environment variables: 
 57:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 57: Test timeout computed to be: 3000
-57/65 Test #57: test_python_unsetNotes ........................   Passed    0.28 sec
+57/65 Test #57: test_python_unsetNotes ........................   Passed    0.15 sec
 test 58
       Start 58: test_python_validateSBML
 
@@ -178574,15 +178610,15 @@
 58: ---------------------------------------------------------------------------
 58:                  filename : /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/from-spec/level-3/enzymekinetics.xml
 58:          file size (byte) : 3930
-58:            read time (ms) : 0.969410
-58:         c-check time (ms) : 6.010771
+58:            read time (ms) : 1.019716
+58:         c-check time (ms) : 1.976728
 58:       validation error(s) : 0
 58:     (consistency error(s)): 0
 58:     validation warning(s) : 0
 58:   (consistency warning(s)): 0
 58: ---------------------------------------------------------------------------
 58: Validated 1 files, 1 valid files, 0 invalid files
-58/65 Test #58: test_python_validateSBML ......................   Passed    0.27 sec
+58/65 Test #58: test_python_validateSBML ......................   Passed    0.15 sec
 test 59
       Start 59: test_python_stringInput
 
@@ -178595,7 +178631,7 @@
 59: 
 59: <class 'str'>
 59: <class 'str'>
-59/65 Test #59: test_python_stringInput .......................   Passed    0.30 sec
+59/65 Test #59: test_python_stringInput .......................   Passed    0.20 sec
 test 60
       Start 60: test_python_stripPackage
 
@@ -178605,7 +178641,7 @@
 60:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 60: Test timeout computed to be: 3000
 60: [OK] stripped package 'fbc' from /build/reproducible-path/libsbml-5.20.4+dfsg/examples/sample-models/fbc/fbc_example1.xml to stripPackage.out.xml
-60/65 Test #60: test_python_stripPackage ......................   Passed    0.31 sec
+60/65 Test #60: test_python_stripPackage ......................   Passed    0.14 sec
 test 61
       Start 61: test_python_fbc_fbc_example1
 
@@ -178614,7 +178650,7 @@
 61: Environment variables: 
 61:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 61: Test timeout computed to be: 3000
-61/65 Test #61: test_python_fbc_fbc_example1 ..................   Passed    0.28 sec
+61/65 Test #61: test_python_fbc_fbc_example1 ..................   Passed    0.20 sec
 test 62
       Start 62: test_python_groups_groups_example1
 
@@ -178623,7 +178659,7 @@
 62: Environment variables: 
 62:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 62: Test timeout computed to be: 3000
-62/65 Test #62: test_python_groups_groups_example1 ............   Passed    0.25 sec
+62/65 Test #62: test_python_groups_groups_example1 ............   Passed    0.15 sec
 test 63
       Start 63: test_python_layout_example1_L3
 
@@ -178632,7 +178668,7 @@
 63: Environment variables: 
 63:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 63: Test timeout computed to be: 3000
-63/65 Test #63: test_python_layout_example1_L3 ................   Passed    0.25 sec
+63/65 Test #63: test_python_layout_example1_L3 ................   Passed    0.15 sec
 test 64
       Start 64: test_python_layout_example1
 
@@ -178641,7 +178677,7 @@
 64: Environment variables: 
 64:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 64: Test timeout computed to be: 3000
-64/65 Test #64: test_python_layout_example1 ...................   Passed    0.22 sec
+64/65 Test #64: test_python_layout_example1 ...................   Passed    0.24 sec
 test 65
       Start 65: test_python_qual_qual_example1
 
@@ -178650,11 +178686,11 @@
 65: Environment variables: 
 65:  PYTHONPATH=/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:/build/reproducible-path/libsbml-5.20.4+dfsg/build/src/bindings/python:
 65: Test timeout computed to be: 3000
-65/65 Test #65: test_python_qual_qual_example1 ................   Passed    0.29 sec
+65/65 Test #65: test_python_qual_qual_example1 ................   Passed    0.15 sec
 
 100% tests passed, 0 tests failed out of 65
 
-Total Test time (real) =  40.48 sec
+Total Test time (real) =  43.11 sec
 make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.4+dfsg/build'
    create-stamp debian/debhelper-build-stamp
    dh_testroot -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -179243,7 +179279,8 @@
 	mv /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/*/${pyv}/site-packages/* /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/${pyv}/dist-packages ; \
     fi ; \
 done
-+ [ -d /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/ ]
++ for pyv in python3.13
++ '[' -d /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/ ']'
 + mkdir -p /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/python3.13/dist-packages
 + mv /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/libsbml /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/aarch64-linux-gnu/python3.13/site-packages/libsbml.pth /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr/lib/python3.13/dist-packages
 find /build/reproducible-path/libsbml-5.20.4+dfsg/debian/tmp/usr -type f -name "*.js" -delete
@@ -179274,15 +179311,17 @@
 	rmdir ${madir}/aarch64-linux-gnu ; \
     fi ; \
 done
-+ + uniq
-sort
-+ find debian -name aarch64-linux-gnu -type d
-+ [ -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu ]
-+ echo Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place
+++ find debian -name aarch64-linux-gnu -type d
+++ sort
+++ uniq
++ for madir in `find debian -name aarch64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu ']'
++ echo 'Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place'
 Moving contents of wrong directory debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu into place
 + mv debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/perl5 debian/tmp/usr/lib/aarch64-linux-gnu
 + rmdir debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu
-+ [ -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/aarch64-linux-gnu ]
++ for madir in `find debian -name aarch64-linux-gnu -type d | sort | uniq`
++ '[' -d debian/tmp/usr/lib/aarch64-linux-gnu/aarch64-linux-gnu/aarch64-linux-gnu ']'
 find debian -type f -name "_form*" -delete
 make[1]: Leaving directory '/build/reproducible-path/libsbml-5.20.4+dfsg'
    dh_install -O--builddir=build -O--buildsystem=cmake -O--no-parallel
@@ -179324,12 +179363,12 @@
    dh_makeshlibs -a -O--builddir=build -O--buildsystem=cmake -O--no-parallel
    dh_shlibdeps -a -O--builddir=build -O--buildsystem=cmake -O--no-parallel
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
-dpkg-shlibdeps: warning: diversions involved - output may be incorrect
- diversion by libc6 from: /lib/ld-linux-aarch64.so.1
  diversion by libc6 from: /lib/ld-linux-aarch64.so.1
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
-dpkg-shlibdeps: warning: diversions involved - output may be incorrect
  diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
+dpkg-shlibdeps: warning: diversions involved - output may be incorrect
+ diversion by libc6 from: /lib/ld-linux-aarch64.so.1
+dpkg-shlibdeps: warning: diversions involved - output may be incorrect
  diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged
 dpkg-shlibdeps: warning: diversions involved - output may be incorrect
  diversion by libc6 from: /lib/ld-linux-aarch64.so.1
@@ -179347,19 +179386,19 @@
    dh_gencontrol -O--builddir=build -O--buildsystem=cmake -O--no-parallel
    dh_md5sums -O--builddir=build -O--buildsystem=cmake -O--no-parallel
    dh_builddeb -O--builddir=build -O--buildsystem=cmake -O--no-parallel
+dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.4+dfsg-0.1_all.deb'.
 dpkg-deb: building package 'libsbml5-perl-dbgsym' in '../libsbml5-perl-dbgsym_5.20.4+dfsg-0.1_arm64.deb'.
-dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.4+dfsg-0.1_arm64.deb'.
-dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.4+dfsg-0.1_arm64.deb'.
-dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.4+dfsg-0.1_arm64.deb'.
 dpkg-deb: building package 'libsbml5-examples' in '../libsbml5-examples_5.20.4+dfsg-0.1_all.deb'.
-dpkg-deb: building package 'libsbml5-perl-doc' in '../libsbml5-perl-doc_5.20.4+dfsg-0.1_all.deb'.
 dpkg-deb: building package 'libsbml5-java-dbgsym' in '../libsbml5-java-dbgsym_5.20.4+dfsg-0.1_arm64.deb'.
+dpkg-deb: building package 'libsbml5t64-dbgsym' in '../libsbml5t64-dbgsym_5.20.4+dfsg-0.1_arm64.deb'.
+dpkg-deb: building package 'libsbml5-dev' in '../libsbml5-dev_5.20.4+dfsg-0.1_arm64.deb'.
+dpkg-deb: building package 'python3-sbml5-dbgsym' in '../python3-sbml5-dbgsym_5.20.4+dfsg-0.1_arm64.deb'.
 dpkg-deb: building package 'libsbml5-doc' in '../libsbml5-doc_5.20.4+dfsg-0.1_all.deb'.
 dpkg-deb: building package 'libsbml5t64' in '../libsbml5t64_5.20.4+dfsg-0.1_arm64.deb'.
 dpkg-deb: building package 'libsbml5-octave' in '../libsbml5-octave_5.20.4+dfsg-0.1_arm64.deb'.
-dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.4+dfsg-0.1_arm64.deb'.
-dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.4+dfsg-0.1_arm64.deb'.
 dpkg-deb: building package 'python3-sbml5' in '../python3-sbml5_5.20.4+dfsg-0.1_arm64.deb'.
+dpkg-deb: building package 'libsbml5-java' in '../libsbml5-java_5.20.4+dfsg-0.1_arm64.deb'.
+dpkg-deb: building package 'libsbml5-perl' in '../libsbml5-perl_5.20.4+dfsg-0.1_arm64.deb'.
 dpkg-deb: building package 'python3-sbml5-doc' in '../python3-sbml5-doc_5.20.4+dfsg-0.1_all.deb'.
  dpkg-genbuildinfo --build=binary -O../libsbml_5.20.4+dfsg-0.1_arm64.buildinfo
  dpkg-genchanges --build=binary -O../libsbml_5.20.4+dfsg-0.1_arm64.changes
@@ -179369,12 +179408,14 @@
 dpkg-buildpackage: info: binary-only upload (no source included)
 dpkg-genchanges: info: including full source code in upload
 I: copying local configuration
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/B01_cleanup starting
+I: user script /srv/workspace/pbuilder/2473280/tmp/hooks/B01_cleanup finished
 I: unmounting dev/ptmx filesystem
 I: unmounting dev/pts filesystem
 I: unmounting dev/shm filesystem
 I: unmounting proc filesystem
 I: unmounting sys filesystem
 I: cleaning the build env 
-I: removing directory /srv/workspace/pbuilder/665401 and its subdirectories
-I: Current time: Mon Jul 28 08:45:01 -12 2025
-I: pbuilder-time-stamp: 1753735501
+I: removing directory /srv/workspace/pbuilder/2473280 and its subdirectories
+I: Current time: Mon Aug 31 18:52:54 +14 2026
+I: pbuilder-time-stamp: 1788151974