Diff of the two buildlogs: -- --- b1/build.log 2025-11-03 07:43:27.792512561 +0000 +++ b2/build.log 2025-11-03 07:46:53.668761386 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Nov 2 19:41:00 -12 2025 -I: pbuilder-time-stamp: 1762155660 +I: Current time: Mon Dec 7 04:06:30 +14 2026 +I: pbuilder-time-stamp: 1796565990 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -22,53 +22,85 @@ dpkg-source: info: unpacking nco_5.3.6-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/591843/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 6 14:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='bfe5a40074084cd69da0ea4b540c6777' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='591843' - PS1='# ' - PS2='> ' + INVOCATION_ID=13dacade30bf49f18d30fc248378c28c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1473284 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lb0Ipu5i/pbuilderrc_AjFs --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lb0Ipu5i/b1 --logfile b1/build.log nco_5.3.6-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.lb0Ipu5i/pbuilderrc_T8D1 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.lb0Ipu5i/b2 --logfile b2/build.log nco_5.3.6-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/591843/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -81,7 +113,7 @@ Depends: debhelper-compat (= 13), bison, flex, antlr, libantlr-dev, gsl-bin, libgsl-dev, netcdf-bin, libnetcdf-dev, libudunits2-dev, libdap-dev, texinfo dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19971 files and directories currently installed.) +(Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -279,10 +311,10 @@ Get: 151 http://deb.debian.org/debian forky/main arm64 tex-common all 6.19 [29.4 kB] Get: 152 http://deb.debian.org/debian forky/main arm64 texinfo-lib arm64 7.2-5 [774 kB] Get: 153 http://deb.debian.org/debian forky/main arm64 texinfo all 7.2-5 [1973 kB] -Fetched 92.7 MB in 1s (152 MB/s) +Fetched 92.7 MB in 1s (130 MB/s) Preconfiguring packages ... Selecting previously unselected package m4. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../000-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package flex. @@ -1092,7 +1124,11 @@ Solving dependencies... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/nco-5.3.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../nco_5.3.6-1_source.changes +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/nco-5.3.6/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../nco_5.3.6-1_source.changes dpkg-buildpackage: info: source package nco dpkg-buildpackage: info: source version 5.3.6-1 dpkg-buildpackage: info: source distribution unstable @@ -1147,8 +1183,8 @@ checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes -checking whether UID '1111' is supported by ustar format... yes -checking whether GID '1111' is supported by ustar format... yes +checking whether UID '2222' is supported by ustar format... yes +checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for gcc... gcc checking whether the C compiler works... yes @@ -1441,7 +1477,7 @@ HAVE_NETCDF4_H....... yes HDF5_PLUGIN_PATH..... . HOST................. -HOSTNAME............. codethink04-arm64 +HOSTNAME............. i-capture-the-hostname LDFLAGS.............. -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now LIBS................. -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm NETCDF_INC........... @@ -1467,12 +1503,12 @@ /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /build/reproducible-path/nco-5.3.6/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc +make[3]: /build/reproducible-path/nco-5.3.6/src/nco/ncks: No such file or directory +make[3]: [Makefile:590: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o in_4.nc in_4.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl /usr/bin/ncgen -k netCDF-4 -o in_mlt_rec1.nc in_mlt_rec1.cdl /usr/bin/ncgen -k netCDF-4 -o in_mlt_rec2.nc in_mlt_rec2.cdl -/bin/bash: line 1: /build/reproducible-path/nco-5.3.6/src/nco/ncks: No such file or directory -make[3]: [Makefile:590: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl @@ -1487,52 +1523,51 @@ Making all in nco make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncatted.o ncatted.c -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration 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nco_sld.lo nco_sld.c -nco_grp_utl.c: In function 'nco_chk_xtn': -nco_grp_utl.c:2927:134: warning: '%s' directive argument is null [-Wformat-overflow=] - 2927 | if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO %s value of HDF-EOS5 standard global attribute \"%s\" is \"%s\"\n",nco_prg_nm_get(),fnc_nm,att_sng_he5,att_xtn_val); - | ^~ -nco_grp_utl.c:2944:132: warning: '%s' directive argument is null [-Wformat-overflow=] - 2944 | if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO %s value of netCDF standard global attribute \"%s\" is \"%s\"\n",nco_prg_nm_get(),fnc_nm,att_sng_nc,att_xtn_val); - | ^~ +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-nco_prn.c:1651:53: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] - 1651 | (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); - | ^~ ~~~~~~~ -In file included from /usr/include/stdio.h:970, - from nco_prn.h:22, - from nco_prn.c:10: -In function 'sprintf', - inlined from 'nco_prn_var_val_lmt' at nco_prn.c:1651:10: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 19 and 118 bytes into a destination of size 100 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 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-Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o nco_scm.c:229:25: warning: macro '__DATE__' might prevent reproducible builds [-Wdate-time] 229 | const char date_cpp[]=__DATE__; /* [sng] Date from C pre-processor */ | ^~~~~~~~ nco_scm.c:230:25: warning: macro '__TIME__' might prevent reproducible builds [-Wdate-time] 230 | const char time_cpp[]=__TIME__; /* [sng] Time from C pre-processor */ | ^~~~~~~~ -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_sph.lo nco_sph.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_srm.lo nco_srm.c -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_sph.c -fPIC -DPIC -o .libs/nco_sph.o -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_lst.lo nco_var_lst.c -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_srm.lo nco_srm.c +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o nco_sng_utl.c: In function 'nm2sng_cdl': nco_sng_utl.c:270:41: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 270 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); @@ -1656,8 +1666,25 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_rth.lo nco_var_rth.c -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_scv.lo nco_var_scv.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_lst.lo nco_var_lst.c +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_rth.lo nco_var_rth.c +nco_prn.c: In function 'nco_prn_var_val_lmt': +nco_prn.c:1651:53: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] + 1651 | (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); + | ^~ ~~~~~~~ +In file included from /usr/include/stdio.h:970, + from nco_prn.h:22, + from nco_prn.c:10: +In function 'sprintf', + inlined from 'nco_prn_var_val_lmt' at nco_prn.c:1651:10: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: note: '__builtin___sprintf_chk' output between 19 and 118 bytes into a destination of size 100 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ nco_sng_utl.c: In function 'nm2sng_fl': nco_sng_utl.c:466:41: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] 466 | snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); @@ -1671,13 +1698,24 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_utl.lo nco_var_utl.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_scv.lo nco_var_scv.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o -libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o +nco_grp_utl.c: In function 'nco_chk_xtn': +nco_grp_utl.c:2927:134: warning: '%s' directive argument is null [-Wformat-overflow=] + 2927 | if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO %s value of HDF-EOS5 standard global attribute \"%s\" is \"%s\"\n",nco_prg_nm_get(),fnc_nm,att_sng_he5,att_xtn_val); + | ^~ +nco_grp_utl.c:2944:132: warning: '%s' directive argument is null [-Wformat-overflow=] + 2944 | if(nco_dbg_lvl_get() >= nco_dbg_std) (void)fprintf(stdout,"%s: INFO %s value of netCDF standard global attribute \"%s\" is \"%s\"\n",nco_prg_nm_get(),fnc_nm,att_sng_nc,att_xtn_val); + | ^~ +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o nco_var_utl.lo nco_var_utl.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncbo.o ncbo.c +libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncecat.o ncecat.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncflint.o ncflint.c +gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncks.o ncks.c +gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncpdq.o ncpdq.c ncecat.c: In function 'main': ncecat.c:812:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] 812 | sprintf(grp_out_sfx,"%02d",fl_idx); @@ -1696,13 +1734,11 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncks.o ncks.c -gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncpdq.o ncpdq.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncra.o ncra.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncrename.o ncrename.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncwa.o ncwa.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncap_utl.o ncap_utl.c -test -f ncap_lex.c || /bin/bash ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy +test -f ncap_lex.c || /bin/sh ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -c -o ncap_lex.o ncap_lex.c ncap_lex.l: In function 'nco_yylex': ncap_lex.l:611:34: warning: '%s' directive writing up to 255 bytes into a region of size 147 [-Wformat-overflow=] @@ -1749,7 +1785,7 @@ nco_rgr.c:4352:113: warning: '%s' directive argument is null [-Wformat-overflow=] 4352 | if(nco_rgr_mth_typ == nco_rgr_mth_nil) (void)fprintf(stdout,"%s: WARNING %s reports map global attribute %s = %s does not match SCRIP/ESMF conventions that support only values of \"Conservative\" and \"Bilinear\" for this attribute. Proceeding anyway...\n",nco_prg_nm_get(),fnc_nm,cnv_sng,att_val); | ^~ -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -release 5.3.6 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o libnco.la -rpath /usr/lib/nco nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_crt.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_flt.lo nco_grp_utl.lo nco_grp_trv.lo nco_kd.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_s1d.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -release 5.3.6 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o libnco.la -rpath /usr/lib/nco nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_crt.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_flt.lo nco_grp_utl.lo nco_grp_trv.lo nco_kd.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ply.lo nco_ply_lst.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_s1d.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_sph.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_crt.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_flt.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_kd.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ply.o .libs/nco_ply_lst.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_s1d.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_sph.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -Werror=format-security -mbranch-protection=standard -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -Wl,-soname -Wl,libnco-5.3.6.so -o .libs/libnco-5.3.6.so /usr/lib/aarch64-linux-gnu/libudunits2.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/aarch64-linux-gnu/libnetcdf.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. @@ -1761,24 +1797,24 @@ /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-5.3.6.so" "libnco.so") libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncks ncks.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncra ncra.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -/bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncbo ncbo.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncecat ncecat.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncks ncks.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncra ncra.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncflint ncflint.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncpdq ncpdq.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncbo ncbo.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncflint ncflint.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncecat ncecat.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncrename ncrename.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco -libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncatted ncatted.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncecat ncecat.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncra ncra.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncks ncks.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncrename ncrename.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco +libtool: link: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fopenmp -std=gnu11 -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial ./.libs/libnco.so -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6/src/nco' Making all in nco++ make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco++' @@ -1795,6 +1831,15 @@ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o NcapVar.o NcapVar.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o NcapVarVector.o NcapVarVector.cc In file included from libnco++.hh:26, + from ncap2.cc:80: +fmc_gsl_cls.hh:49:11: warning: 'NCO_GSL_VERSION' redefined + 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) + | ^~~~~~~~~~~~~~~ +In file included from fmc_gsl_cls.hh:12: +../../config.h:446:9: note: this is the location of the previous definition + 446 | #define NCO_GSL_VERSION 208 + | ^~~~~~~~~~~~~~~ +In file included from libnco++.hh:26, from Invoke.cc:13: fmc_gsl_cls.hh:49:11: warning: 'NCO_GSL_VERSION' redefined 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) @@ -1823,15 +1868,6 @@ 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) | ^~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ncoLexer.o ncoLexer.cpp -In file included from libnco++.hh:26, - from ncap2.cc:80: -fmc_gsl_cls.hh:49:11: warning: 'NCO_GSL_VERSION' redefined - 49 | # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) - | ^~~~~~~~~~~~~~~ -In file included from fmc_gsl_cls.hh:12: -../../config.h:446:9: note: this is the location of the previous definition - 446 | #define NCO_GSL_VERSION 208 - | ^~~~~~~~~~~~~~~ g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ncoParser.o ncoParser.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o ncoTree.o ncoTree.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o nco_gsl.o nco_gsl.cc @@ -1855,7 +1891,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -/bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard ../nco/libnco.la -lantlr -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm +/bin/sh ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard ../nco/libnco.la -lantlr -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -lnetcdf -Wl,-z,relro -Wl,-z,now -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/aarch64-linux-gnu -lgsl -lgslcblas -lm libtool: link: g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/nco-5.3.6=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o ../nco/.libs/libnco.so -lantlr -L/usr/lib/aarch64-linux-gnu -L/usr/lib/aarch64-linux-gnu/hdf5/serial -ludunits2 -lnetcdf -lcurl -lgsl -lgslcblas -lm -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6/src/nco++' make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/src' @@ -1871,13 +1907,13 @@ restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ -if (/bin/bash '/build/reproducible-path/nco-5.3.6/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \ +if (/bin/sh '/build/reproducible-path/nco-5.3.6/autobld/missing' makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ -if /bin/bash '/build/reproducible-path/nco-5.3.6/autobld/missing' makeinfo -I . \ +if /bin/sh '/build/reproducible-path/nco-5.3.6/autobld/missing' makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ @@ -1904,7 +1940,7 @@ make[2]: Leaving directory '/build/reproducible-path/nco-5.3.6/doc' make[2]: Entering directory '/build/reproducible-path/nco-5.3.6/doc' rm -rf nco.htp -if /bin/bash '/build/reproducible-path/nco-5.3.6/autobld/missing' makeinfo --html --ifinfo --no-split -I . \ +if /bin/sh '/build/reproducible-path/nco-5.3.6/autobld/missing' makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ @@ -1918,424 +1954,7 @@ make[2]: 'nco.info' is up to date. make[2]: Leaving directory '/build/reproducible-path/nco-5.3.6/doc' make[1]: Leaving directory '/build/reproducible-path/nco-5.3.6' - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/nco-5.3.6' -# currently the check phase badly fails -dh_auto_test || echo "Ignoring test failures" - make -j12 test TESTSUITEFLAGS="-j12 --verbose" VERBOSE=1 -make[2]: Entering directory '/build/reproducible-path/nco-5.3.6' -make check -make[3]: Entering directory '/build/reproducible-path/nco-5.3.6' -Making check in data -make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/data' -make[4]: Nothing to be done for 'check'. -make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6/data' -Making check in src -make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/src' -Making check in nco -make[5]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco' -make check-TESTS -make[6]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco' -make[7]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco' -============================================================================ -Testsuite summary for NCO netCDF Operators 5.3.6 -============================================================================ -# TOTAL: 0 -# PASS: 0 -# SKIP: 0 -# XFAIL: 0 -# FAIL: 0 -# XPASS: 0 -# ERROR: 0 -============================================================================ -make[7]: Leaving directory '/build/reproducible-path/nco-5.3.6/src/nco' -make[6]: Leaving directory '/build/reproducible-path/nco-5.3.6/src/nco' -make[5]: Leaving directory '/build/reproducible-path/nco-5.3.6/src/nco' -Making check in nco++ -make[5]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco++' -make[5]: Nothing to be done for 'check'. -make[5]: Leaving directory '/build/reproducible-path/nco-5.3.6/src/nco++' -make[5]: Entering directory '/build/reproducible-path/nco-5.3.6/src' -make[5]: Nothing to be done for 'check-am'. -make[5]: Leaving directory '/build/reproducible-path/nco-5.3.6/src' -make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6/src' -Making check in man -make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/man' -make[4]: Nothing to be done for 'check'. -make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6/man' -Making check in doc -make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/doc' -make[4]: Nothing to be done for 'check'. -make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6/doc' -make[4]: Entering directory '/build/reproducible-path/nco-5.3.6' -make[4]: Leaving directory '/build/reproducible-path/nco-5.3.6' -make[3]: Leaving directory '/build/reproducible-path/nco-5.3.6' -cd data && make in_4c.nc && cd .. -make[3]: Entering directory '/build/reproducible-path/nco-5.3.6/data' -/build/reproducible-path/nco-5.3.6/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc -make[3]: Leaving directory '/build/reproducible-path/nco-5.3.6/data' -cd bm && ./nco_bm.pl --regress -Attempt to call undefined import method with arguments ("dbg_msg" ...) via package "NCO_bm" (Perhaps you forgot to load the package?) at NCO_rgr.pm line 18. - -INFO: Testing for required modules - Time::HiRes ... found. - IO::Socket ... found. -You do not have a $DATA directory defined and the test files are several GB. -Where would you like to write the test data? Data will be placed in the indicated directory, -under nco_bm, using the '--caseid' option to set the name of the subdirectory, if any. -[/build/reproducible-path/nco-5.3.6/debian/.debhelper/generated/_source/home] or specify: You entered [] -Making /build/reproducible-path/nco-5.3.6/debian/.debhelper/generated/_source/home/nco_bm/ & continuing - -Cannot get socket - continuing anyway. - -failed to execute: ncks --lbr_rcd: No such file or directory - -ncap2 test 01: Testing float modulo float......................................................... SVa ok -ncap2 test 02: Testing foo=log(e_flt)^1 (may fail on old AIX TODO ncap57)......................... SVn ok -ncap2 test 03: Testing foo=log(e_dbl)^1........................................................... SVn ok -ncap2 test 04: Testing foo=4*atan(1).............................................................. SVn ok -ncap2 test 05: Testing foo=erf(1) (may fail on old AIX TODO ncap57)...............................Segmentation fault - !!FAILED - $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 - ERR: FAILED in ncap2 test: Testing foo=erf(1) (may fail on old AIX TODO ncap57) - ERR::EXPLAIN: Result: [] != Expected: [0.842700779438] - -ncap2 test 06: Testing foo=gamma(0.5) (may fail on old AIX TODO ncap57)...........................Segmentation fault - !!FAILED - $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 - ERR: FAILED in ncap2 test: Testing foo=gamma(0.5) (may fail on old AIX TODO ncap57) - ERR::EXPLAIN: Result: [] != Expected: [1.772453851] - -ncap2 test 07: Testing foo=sin(pi/2).............................................................. SVn ok -ncap2 test 08: Testing foo=cos(pi)................................................................ SVn ok -ncap2 test 09: Casting variable with same name as dimension (ncap81 failed with netCDF4 until n... SVn ok -ncap2 test 10: Casting variable with a single dim of sz=1 (ncap81 failed with netCDF4 until net... SVn ok -ncap2 test 11: Verify non-averaging functions min/max on coordinate variables..................... SVn ok -ncap2 test 12: Run script to to test GSL functions -FAILS IF NOT linked to GSL lib................ SVn ok -ncap2 test 13: Run script to to test casting, hyperslabbing and intrinsic functions (Requires G... SVn ok -ncap2 test 14: Run script to test conversion of input vars to type NC_DOUBLE using var-pointers... SVn ok -ncap2 test 15: Run script to test udunits code.................................................... SVn ok -ncap2 test 16: Run script to to test ncap2 NC_STRING handling (failure expected 2017-06-21)....... SVn ok -ncap2 test 17: Run script to test sort functions.................................................. SVn ok -ncap2 test 18: Run script to test pack() function................................................. SVn ok -ncap2 test 19: Run self-contained test script..................................................... SVn ok -ncap2 test 20: Run test limits script............................................................. SVn ok -ncatted test 01: Modify all existing units attributes to meter second-1............................. SVa ok -ncatted test 02: Change _FillValue attribute from 1.0e36 to 0.0 in netCDF3 file..................... SVn ok -ncatted test 03: Create new _FillValue attribute.................................................... SVn ok -ncatted test 04: Pad header with 1000B extra bytes (expect ERROR on MacOS due to different comman... SVn ok -ncatted test 05: Variable wildcarding (requires regex).............................................. SVn ok -ncatted test 06: Attribute wildcarding (requires regex)............................................. SVn ok -ncatted test 07: Delete all attributes (expect ERROR on MacOS due to "cut" behavior)................ SVn ok -ncbo test 01: Difference a packed variable and be sure everything is zero or _FillValue by ave... SVn ok -ncbo test 02: Whole file difference with broadcasting (OK to fail here fxm TODO nco757. Works ... SVn ok -ncbo test 03: difference scalar missing value.................................................... SVn ok -ncbo test 04: difference with missing value attribute............................................ SVn ok -ncbo test 05: difference without missing value attribute......................................... SVn ok -ncbo test 06: _FillValues differ between files................................................... SVa ok -ncbo test 07: _FillValue in one variable (not both variables).................................... SVn ok -ncbo test 08: ncdiff symbolically linked to ncbo................................................. SVn ok -ncbo test 09: difference with missing value attribute............................................ SVn ok -ncbo test 10: Difference without missing value attribute......................................... SVn ok -ncbo test 11: Difference which tests broadcasting and changing variable IDs...................... SVn ok -ncbo test 12: Difference which tests 3D broadcasting............................................. SVn ok -ncbo test 13: Addition + 3D broadcasting+ MSA.................................................... SVn ok -ncbo test 14: Copy associated coordinates -v three_dmn_rec_var................................... SVa ok -ncbo test 15: Concatenate variables with different ID ordering................................... SVa ok -nces test 01: ensemble mean of int across two files.............................................. SVn ok -nces test 02: ensemble sum of missing value across two files..................................... SVn ok -nces test 03: ensemble mean with missing values across two files................................. SVn ok -nces test 04: ensemble min of float across two files............................................. SVn ok -nces test 05: scale factor + add_offset packing/unpacking........................................ SVn ok -nces test 06: ensemble mean of integer with integer missing values across two files.............. SVa ok -nces test 07: ensemble mean of 3D variable across two files with MSA............................. SVn ok -nces test 08: Check op with OpenMP............................................................... !!FAILED - $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 - ERR: FAILED in nces test: Check op with OpenMP - ERR::EXPLAIN: Result: [] != Expected: [n2 = 1] - -nces test 09: Ensemble mean of variable packed with netCDF convention across three files......... SVn ok -nces test 10: Ensemble mean of variable packed with HDF convention across three files............ SVn ok -nces test 11: Test file loop..................................................................... SVa ok -nces test 12: Test mebs normalization............................................................ SVa ok -nces test 13: Test tabs (total absolute value)................................................... SVa ok -nces test 14: Test tabs on coordinate............................................................ SVa ok -ncecat test 01: concatenate two files containing only scalar variables............................. SVa ok -ncecat test 02: concatenate two 3D vars with multihyperslabbing.................................... SVn ok -ncecat test 03: Concatenate variables with different ID ordering................................... SVn ok -ncecat test 04: Verify concatentated coordinates do not gain new record dimension.................. SVa ok -ncecat test 05: Test group aggregation with --gag.................................................. SVa ok -ncflint test 01: identity weighting................................................................. SVn ok -ncflint test 02: identity interpolation............................................................. SVn ok -ncflint test 03: switch order of occurrence to test for commutivity................................. SVn ok -ncflint test 04: output type float when interpolating between two packed floats..................... SVn ok -ncflint test 05: Concatenate variables with different ID ordering................................... SVa ok -ncks test 01: Create T42 variable named one, uniformly 1.0 over globe in %tmp_fl_03%. (FAILURE... SVn ok -ncks test 02: extract filename string............................................................ SVa ok -ncks test 03: extract a dimension................................................................ SVa ok -ncks test 04: extract a variable with limits..................................................... SVn ok -ncks test 05: extract variable of type NC_INT.................................................... SVn ok -ncks test 06: Multi-slab lat and lon with srd.................................................... SVa ok -ncks test 07: Multi-slab with redundant hyperslabs............................................... SVa ok -ncks test 08: Multi-slab with coordinates........................................................ SVa ok -ncks test 09: Double-wrapped hyperslab........................................................... SVa ok -ncks test 10: dimension slice using UDUnits library (fails without UDUnits library support)...... SVn ok -ncks test 11: dim slice using UDUnits library and cal 365_days (fails without UDUnits library ... SVa ok -ncks test 12: dim slice using UDUnits library and cal 360_days (fails without UDUnits library ... SVa ok -ncks test 13: dimension slice using UDUnit conversion (fails without UDUnits library support).... SVn prov. ok -ncks test 14: variable wildcards A (fails without regex library)................................. SVn ok -ncks test 15: variable wildcards B (fails without regex library)................................. SVn ok -ncks test 16: Print byte value................................................................... SVn ok -ncks test 17: CF convention coordinates attribute................................................ SVn ok -ncks test 18: Create/copy global _FillValue...................................................... SVn ok -ncks test 19: Auxiliary coordinates writing -X 0.,1.,-30.,-29. -v gds_3dvar...................... SVa ok -ncks test 20: Extract CF 'ancillary_variables' variables (netCDF3 file).......................... SVa ok -ncks test 21: Select last element using negative one index....................................... SVa ok -ncks test 22: Auxiliary coordinate writing two variables......................................... SVa ok -ncks test 23: Test -X auxiliary coordinates where underlying dimension is a non-coordinate dim... SVa ok -ncks test 24: Test attribute writing for DSD compression......................................... SVa ok -ncks test 25: Test DSD compression rounding to hundreds.......................................... SVn ok -ncks test 26: Test DSD attribute does not overwrite pre-existing rounder values.................. SVa ok -ncks test 27: Test DSD attribute does overwrite pre-existing sharper values in multi-argument ... SVa ok -ncks test 28: Test attribute writing for NSD compression......................................... SVa ok -ncks test 29: Test NSD compression rounding to three significant digits.......................... SVn ok -ncks test 30: Test NSD attribute does not overwrite pre-existing rounder values.................. SVa ok -ncks test 31: Test NSD attribute does overwrite pre-existing sharper values...................... SVa ok -ncks test 32: (expect ERROR correct behavior is to fail/abort) Die if -x exclusion of coordina... SVa ok -ncks test 33: Extract 'climatology' variables.................................................... SVn ok -ncks test 34: (Groups) Test wrapped limit with addtional limit (no --msa)........................ SVa ok -ncks test 35: (Groups) (expect ERROR fixable TODO nco1134) Wrapped limit with additional limit... ERR: FAILED in ncks test: (Groups) (expect ERROR fixable TODO nco1134) Wrapped limit with additional limit and msa user order - ERR::EXPLAIN: Result: [time[2]=3 ] != Expected: [time[3]=3] - -ncks test 36: Multi-argument parsing by Jerome, test last argument is time string................ SVa ok -ncks test 37: Multi-argument parsing test first argument......................................... SVa ok -ncks test 38: Multi-argument parsing test second-to-last key is time string...................... SVa ok -ncks test 39: Multi-argument parsing test arguments after time string kvm........................ SVa ok -ncks test 40: Multi-argument parsing test when all kvms have subdelimiters....................... SVa ok -ncks test 41: Multi-argument parsing test when some of the delimiters are handled by backslash... SVa ok -ncks test 42: Test UDUNITS with dates as limits - fails without UDUNITS.......................... SVa ok -ncks test 43: Test behavior when NC4_SRD_WORKAROUND would be used................................ SVa ok -ncks test 44: Multi-argument parsing test with flags............................................. SVa ok -ncks test 45: netCDF4 test extraction of OOG CF2 vars declared in lon4_var:bounds and lat4_var... SVn ok -ncks test 46: netCDF4 test --cal switch.......................................................... SVa ok -ncks test 47: ncks test auxiliary coords WITHOUT standard_name................................... SVn ok -ncpdq test 01: Reverse coordinate -a -lat -v lat.................................................. SVn ok -ncpdq test 02: Reverse 3D variable a -lat,-lev,-lon -v three_dmn_var.............................. SVn ok -ncpdq test 03: Re-order 3D variable (no associated coordinates) -C -a lon,lat -v three_dmn_var ... SVn ok -ncpdq test 04: Re-order 3D variable (associated coordinates) -a lon,lat -v three_dmn_var ......... SVn ok -ncpdq test 05: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,... SVn ok -ncpdq test 06: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,... SVa ok -ncpdq test 07: Re-order 3D variable with MSA (stride) -a lat,lon,time -d time,1,3,2 -d lat,1,1,... SVa ok -ncpdq test 08: Re-order 3D variable with MSA+ reversal of time dim -C -a lat,lon,-time -v three... SVn ok -ncpdq test 09: Re-order 3D variable with MSA and --msa_usr_rdr flag -C -a lon,lat -v three_dmn_... SVa ok -ncpdq test 10: Re-order 2D variable (-C, no MSA, no-reorder) -v two_dmn_var -a lat,lev............ SVa ok -ncpdq test 11: Re-order 2D variable (-C, no MSA) -v two_dmn_var -a lev,lat........................ SVa ok -ncpdq test 12: Re-order 2D variable (no -C, no MSA) -v two_dmn_var -a lev,lat..................... SVa ok -ncpdq test 13: Re-order 2D variable (-C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,1..... SVa ok -ncpdq test 14: Re-order 2D variable (no -C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,... SVa ok -ncpdq test 15: Re-order 2D variable with record (-C, no MSA) -v two_dmn_rec_var -C -a lev,time.... SVa ok -ncpdq test 16: Re-order 2D variable with record (no -C, no MSA) -v two_dmn_rec_var -a lev,time.... SVa ok -ncpdq test 17: Re-order 2D variable with record (-C, MSA) -a lev,time -d time,1,1 -d lev,1,1 -v... SVa ok -ncpdq test 18: Re-order 2D variable with record (no -C, MSA) -a lev,time -d time,1,1 -d lev,1,1... SVa ok -ncpdq test 19: Reverse/Re-order 3D variable -a -lat,-time -v three_dmn_var_dbl -d time,1,1 -d l... SVa ok -ncpdq test 20: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test1...... SVa ok -ncpdq test 21: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test2...... SVa ok -ncpdq test 22: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test1 read ... SVa ok -ncpdq test 23: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test2 read ... SVa ok -ncpdq test 24: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test3 check recor... SVa ok -ncpdq test 25: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test4 check non-r... SVa ok -ncpdq test 26: Reverse/Re-order 4D variable -a lev,time,-lon,-lat -v four_dmn_rec_var (MSA)....... SVa ok -ncpdq test 27: Re-order 3D variable (only 1 in -a) -a lat,time -v PS,three_dmn_var_crd (MSA)...... SVa ok -ncpdq test 28: Re-order all variables -a lat,time (MSA)........................................... SVa ok -ncpdq test 29: Pack and then unpack scalar (uses only add_offset) -P all_new -v upk............... SVn ok -ncpdq test 30: Unpack 1D variable with MSA -C P upk -v rec_var_dbl_mss_val_dbl_pck -d time,0,4 ... SVn ok -ncpdq test 31: Pack 3D variable with MSA -C -P all_xst -v three_dmn_var_dbl -d time,0,2 -d time... !!FAILED - $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 - ERR: FAILED in ncpdq test: Pack 3D variable with MSA -C -P all_xst -v three_dmn_var_dbl -d time,0,2 -d time,8,9 -d lon,0 -d lon,1 -d lat,1 - ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [17505] - -ncpdq test 32: Unpack 1D variable twice to verify first unpacking does not inadvertently store ... SVn ok -ncpdq test 33: Unpack 1D variable with netCDF convention.......................................... SVn ok -ncpdq test 34: Unpack 1D variable with HDF convention............................................. SVn ok -ncpdq test 35: Re-pack 1D variable from HDF convention to netCDF convention....................... SVn ok -ncrcat test 01: Concatenate float with double missing values across two files...................... SVn ok -ncrcat test 02: Concatenate record coordinate-bounded variable across two non-monotonic files...... SVa ok -ncrcat test 03: Concatenate float variable with multislabs across two files........................ SVn ok -ncrcat test 04: Concatenate int variable with multislabs across two files.......................... SVn ok -ncrcat test 05: Concatenate float 4D variable with multislabs across two files..................... SVn ok -ncrcat test 06: Concatenate 1D variable with stride across two files............................... SVa ok -ncrcat test 07: Concatenate 1D variable with stride across three files............................. SVa ok -ncrcat test 08: Concatenate 1D variable with stride across files with different record dimension... SVa ok -ncrcat test 09: Concatenate 1D variable across two files no limits. Requires UDUnits............... SVa ok -ncrcat test 10: Concatenate 1D variable across three files double limits. Requires UDUnits......... SVa ok -ncrcat test 11: Concatenate 1D variable across three files double limits2. Requires UDUnits........ SVa ok -ncrcat test 12: Concatenate 1D variable across three files time stamp limits2. Requires UDUnits.... SVa ok -ncrcat test 13: Cat. 1D var over 3 files with large stride. Requires UDUnits....................... SVa ok -ncrcat test 14: Cat. 1D var over 3 files coord limits+stride. Requires UDUnits..................... SVa ok -ncrcat test 15: Cat. 1D var over three files date-stamp limits+stride. Requires UDUnits............ SVa ok -ncrcat test 16: Cat. 1D var over 3 files date-stamp limits+stride. Requires UDUnits................ SVa ok -ncrcat test 17: Cat. 1D variable over 3 files dmn limits+stride. Requires UDUnits.................. SVa ok -ncrcat test 18: Cat. 1D var over 4 files different record sizes. Requires UDUnits.................. SVa ok -ncrcat test 19: Cat. 1D var over 4 files with srd=4 different rec sizes. Requires UDUnits.......... SVa ok -ncrcat test 20: Cat. 1D var over 4 files with srd=3 str/end timestamps. Requires UDUnits........... SVa ok -ncrcat test 21: Append records to existing file without copying original........................... !!FAILED - $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 - ERR: FAILED in ncrcat test: Append records to existing file without copying original - ERR::EXPLAIN: Result: [ncks: HINT Conform request to hyperslab documentation at http://nco.sf.net/nco.html#hyp] != Expected: [10] - -ncrcat test 22: Concatenate 1D variable across two files. [hours file1 - days file2]. Requires U... SVa ok -ncrcat test 23: Concatenate 1D variable across 1 file with temperature (Celsius) limits............ SVa ok -ncrcat test 24: Concatenate 1D variable across 1 file. [limits - timstamp day_360 calendar]. Req... SVa ok -ncrcat test 25: Concatenate 1D variable across two files no limits check climatology_bounds . Re... SVa ok -ncrcat test 26: Concatenate 1D variable across two files, rebase time (NC_INT) in second file. R... SVa ok -ncrcat test 27: Detect input_complete when stride skips user-specified idx_end_max................. SVa ok -ncrcat test 28: Another detect input_complete when stride skips user-specified idx_end_max......... SVa ok -ncra test 01: record sdn of float with double missing values across two files.................... SVn ok -ncra test 02: record mean of int across two files................................................ SVn ok -ncra test 03: record mean of float with double missing values.................................... SVn ok -ncra test 04: record mean of float with integer missing values................................... SVn ok -ncra test 05: record mean of integer with integer missing values................................. SVn ok -ncra test 06: record mean of integer with integer missing values across two files................ SVn ok -ncra test 07: record mean of integer with float missing values................................... SVn ok -ncra test 08: record mean of integer with float missing values across two files.................. SVn ok -ncra test 09: record mean of packed double with double missing values............................ SVn ok -ncra test 10: record mean of packed double to test precision..................................... SVn ok -ncra test 11: record mean of packed float to test precision...................................... SVn ok -ncra test 12: pass through non-record (i.e., non-processed) packed data to output................ SVn ok -ncra test 13: record mean of float with double missing values across two files................... SVn ok -ncra test 14: record min of float with double missing values across two files.................... SVn ok -ncra test 15: record max of float with double missing values across two files.................... SVn ok -ncra test 16: record ttl of float with double missing values across two files.................... SVn ok -ncra test 17: record rms of float with double missing values across two files.................... SVn ok -ncra test 18: Return mean time coordinate (when computing totals) across two files............... SVn ok -ncra test 19: Return total record (when computing totals) across two files....................... SVn ok -ncra test 20: Return record average of cell-based geodesic data.................................. SVa ok -ncra test 21: Check op with OpenMP............................................................... !!FAILED - $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 - ERR: FAILED in ncra test: Check op with OpenMP - ERR::EXPLAIN: Result: [] != Expected: [n2 = 1] - -ncra test 22: Append records to existing file without copying original........................... SVn ok -ncra test 23: Treatment of missing values with MRO and rth_dbl................................... SVn ok -ncra test 24: Handle scale factor and missing value with rth_dbl................................. SVn ok -ncra test 25: Test per-file weighting with --wgt 28,29,30........................................ SVa ok -ncra test 26: Test per-record weighting with --wgt=one_dmn_rec_wgt............................... SVn ok -ncra test 27: Test per-file weighting without missing values..................................... SVn ok -ncra test 28: Test per-file weighting with missing values with --wgt 1,2,3....................... SVn ok -ncra test 29: Test per-file weighting with missing values with --wgt 3,2,1....................... SVn ok -ncra test 30: Test MSA running average (expect failure TODO nco1126)............................. FAILED! - ERR: FAILED in ncra test: Test MSA running average (expect failure TODO nco1126) - ERR::EXPLAIN: Result: [1.30458e-319] != Expected: [1.5] - -ncra test 31: Test SSC MRO running average....................................................... SVa ok -ncwa test 01: Creating %tmp_fl_03% again (FAILURE netCDF4 ncrename nco821) ...................... SVn ok -ncwa test 02: normalize by denominator upper hemisphere (FAILURE netCDF4 ncrename nco821)........ SVn ok -ncwa test 03: return average coordinate coordinate variable during minimization for non-coordi... SVn ok -ncwa test 04: pass through non-averaged (i.e., non-processed) packed data to output.............. SVn ok -ncwa test 05: do not normalize by denominator (FAILURE netCDF4 nco946)........................... SVn ok -ncwa test 06: average with missing value attribute............................................... SVn ok -ncwa test 07: average without missing value attribute............................................ SVn ok -ncwa test 08: average masked coordinate.......................................................... SVn ok -ncwa test 09: average masked variable............................................................ SVn ok -ncwa test 10: average masked, weighted coordinate................................................ SVn ok -ncwa test 11: average masked, weighted variable.................................................. SVn ok -ncwa test 12: weight conforms to variable first time............................................. SVn ok -ncwa test 13: average all missing values with weights............................................ SVn ok -ncwa test 14: average some missing values with unity weights..................................... SVn ok -ncwa test 15: average masked variable with some missing values................................... SVn ok -ncwa test 16: average uniform field with uniform weights......................................... SVn ok -ncwa test 17: average uniform field with asymmetric weights...................................... SVn ok -ncwa test 18: average asymmetric field with asymmetric weights................................... SVn ok -ncwa test 19: min switch on type double, some missing values..................................... SVn ok -ncwa test 20: Dimension reduction with min switch and missing values............................. SVn ok -ncwa test 21: Dimension reduction with min switch................................................ SVn ok -ncwa test 22: Dimension reduction on type int with min switch and missing values................. SVn ok -ncwa test 23: Dimension reduction on type int variable........................................... SVn ok -ncwa test 24: Dimension reduction on type short variable with min switch and missing values...... SVn ok -ncwa test 25: Dimension reduction on type short variable......................................... SVn ok -ncwa test 26: Dimension reduction with min flag on type float variable........................... SVn ok -ncwa test 27: Max flag on type float variable.................................................... SVn ok -ncwa test 28: Dimension reduction on type double variable with max switch and missing values..... SVn ok -ncwa test 29: Dimension reduction on type double variable........................................ SVn ok -ncwa test 30: Dimension reduction on type int variable with min switch and missing values........ SVn ok -ncwa test 31: Dimension reduction on type int variable........................................... SVn ok -ncwa test 32: Dimension reduction on type short variable with max switch and missing values...... SVn ok -ncwa test 33: Dimension reduction on type short, max switch variable............................. SVn ok -ncwa test 34: Weights at root group level........................................................ SVn ok -ncwa test 35: weights would cause SIGFPE without dbl_prc patch................................... SVn ok -ncwa test 36: avg would overflow without dbl_prc patch........................................... SVn ok -ncwa test 37: test wrapped ttl with dbl_prc patch (harmless failure expected/OK on all chips s... SVn ok -ncwa test 38: min with weights................................................................... SVn ok -ncwa test 39: max with weights................................................................... SVn ok -ncwa test 40: Return mean time coordinate (when computing totals)................................ SVn ok -ncwa test 41: Return total record (when computing totals)........................................ SVn ok -ncwa test 42: Retain degenerate dimensions (one variable)........................................ SVa ok -ncwa test 43: Retain degenerate dimensions (all variables)....................................... SVa ok -ncwa test 44: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... SVa ok -ncwa test 45: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... SVa ok -ncwa test 46: Cell methods (Create, maximum) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... SVa ok -ncwa test 47: Mask condition with negative value................................................. SVa ok -ncwa test 48: Minimization on packed single-precision float...................................... SVa ok -ncwa test 49: Simple weights..................................................................... SVn ok -ncwa test 50: Test mebs normalization............................................................ SVa ok -ncwa test 51: Test tabs (total absolute value)................................................... SVa ok -ncwa test 52: Test tabs on coordinate............................................................ SVa ok -ncwa test 53: Mask condition not in variable list (fixed with nco1138 20170804).................. SVa ok -ncwa test 54: Mask condition not in variable list (mask is relative coordinate variable) (fixe... SVa ok -ncwa test 55: Mask condition not in variable list (mask is absolute coordinate variable) (fixe... SVa ok -ncwa test 56: Weight without mask and without hyperslab.......................................... SVa ok -ncwa test 57: Weight without mask and with hyperslab............................................. SVa ok -ncwa test 58: Weight with mask and with hyperslab................................................ SVa ok -ncrenam test 01: netCDF3: Valid values after renaming coordinate dimension in netCDF3 file.......... SVn ok -ncrenam test 02: netCDF3: Valid values after renaming coordinate variable in netCDF3 file........... SVn ok -ncrenam test 03: netCDF3: Valid values after renaming coordinate dimension and variable in netCDF... SVn ok -ncrenam test 04: netCDF4-classic: Valid values after renaming coordinate dimension in netCDF4-cla... SVn ok -ncrenam test 05: netCDF4-classic: Valid values after renaming coordinate variable in netCDF4-clas... SVn ok -ncrenam test 06: netCDF4-classic: Valid values after renaming coordinate dimension and variable i... FAILED! - ERR: FAILED in ncrename test: netCDF4-classic: Valid values after renaming coordinate dimension and variable in netCDF4-classic file (netCDF bug, requires Unidata fix https://github.com/Unidata/netcdf-c/issues/597) - ERR::EXPLAIN: Result: [9.96921e+36] != Expected: [1] - -ncrenam test 07: netCDF4: Valid values after renaming coordinate dimension in netCDF4 file.......... SVn ok -ncrenam test 08: netCDF4: Valid values after renaming coordinate variable in netCDF4 file........... SVn ok -ncrenam test 09: netCDF4: Valid values after renaming coordinate dimension and variable in netCDF... FAILED! - ERR: FAILED in ncrename test: netCDF4: Valid values after renaming coordinate dimension and variable in netCDF4 file (netCDF bug, requires Unidata fix https://github.com/Unidata/netcdf-c/issues/597) - ERR::EXPLAIN: Result: [9.96921e+36] != Expected: [1] - -ncrenam test 10: netCDF4: Simultaneously rename multiple dimensions (netCDF bug, requires Unidata... FAILED! - ERR: FAILED in ncrename test: netCDF4: Simultaneously rename multiple dimensions (netCDF bug, requires Unidata fix https://github.com/Unidata/netcdf-c/issues/597) - ERR::EXPLAIN: Result: [0] != Expected: [1] - -ncrenam test 11: netCDF4: Check that NC_STRING history attribute appending works.................... FAILED! - ERR: FAILED in ncrename test: netCDF4: Check that NC_STRING history attribute appending works - ERR::EXPLAIN: Result: [10] != Expected: [11] - - - -Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux; gcc (Debian 15.2.0-7) 15.2.0; - - Test Results Seconds to complete - -------------------------- ---------------------------------------- - Test Success Failure Total WallClock Real User System Diff - ncap2: 18 2 20 2.70 0.00 0.00 0.00 0.00 - ncatted: 7 7 0.67 0.00 0.00 0.00 0.00 - ncbo: 15 15 2.65 0.00 0.00 0.00 0.00 - ncflint: 5 5 1.07 0.00 0.00 0.00 0.00 - nces: 13 1 14 0.93 0.00 0.00 0.00 0.00 - ncecat: 5 5 0.57 0.00 0.00 0.00 0.00 - ncks: 46 1 47 6.62 0.00 0.00 0.00 0.00 - ncpdq: 34 1 35 3.60 0.00 0.00 0.00 0.00 - ncra: 29 2 31 3.64 0.00 0.00 0.00 0.00 - ncrcat: 27 1 28 6.67 0.00 0.00 0.00 0.00 - ncrename: 7 4 11 3.17 0.00 0.00 0.00 0.00 - ncwa: 58 58 6.31 0.00 0.00 0.00 0.00 - -NB:MD5: test passes MD5 checksum on file(s) May be more than one intermediate file. -SVx: test passes single terminal value check SVn=numeric, SVa=alphabetic - -OK - data NOT sent, thanks for using NCO anyway - bye! - -make[2]: Leaving directory '/build/reproducible-path/nco-5.3.6' -make[1]: Leaving directory '/build/reproducible-path/nco-5.3.6' +dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=autoconf dh_prep -O--buildsystem=autoconf @@ -2356,13 +1975,13 @@ make[3]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco' make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco' /usr/bin/mkdir -p '/build/reproducible-path/nco-5.3.6/debian/nco/usr/lib/nco' - /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/build/reproducible-path/nco-5.3.6/debian/nco/usr/lib/nco' + /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/build/reproducible-path/nco-5.3.6/debian/nco/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/libnco-5.3.6.so /build/reproducible-path/nco-5.3.6/debian/nco/usr/lib/nco/libnco-5.3.6.so libtool: install: (cd /build/reproducible-path/nco-5.3.6/debian/nco/usr/lib/nco && { ln -s -f libnco-5.3.6.so libnco.so || { rm -f libnco.so && ln -s libnco-5.3.6.so libnco.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /build/reproducible-path/nco-5.3.6/debian/nco/usr/lib/nco/libnco.la libtool: warning: remember to run 'libtool --finish /usr/lib/nco' /usr/bin/mkdir -p '/build/reproducible-path/nco-5.3.6/debian/nco/usr/bin' - /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/build/reproducible-path/nco-5.3.6/debian/nco/usr/bin' + /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/build/reproducible-path/nco-5.3.6/debian/nco/usr/bin' libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncatted /build/reproducible-path/nco-5.3.6/debian/nco/usr/bin/ncatted libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' @@ -2395,7 +2014,7 @@ make[3]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco++' make[4]: Entering directory '/build/reproducible-path/nco-5.3.6/src/nco++' /usr/bin/mkdir -p '/build/reproducible-path/nco-5.3.6/debian/nco/usr/bin' - /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/build/reproducible-path/nco-5.3.6/debian/nco/usr/bin' + /bin/sh ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/build/reproducible-path/nco-5.3.6/debian/nco/usr/bin' libtool: warning: '../nco/libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncap2 /build/reproducible-path/nco-5.3.6/debian/nco/usr/bin/ncap2 make[4]: Nothing to be done for 'install-data-am'. @@ -2463,7 +2082,7 @@ diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged -dpkg-shlibdeps: warning: debian/nco/usr/lib/nco/libnco-5.3.6.so contains an unresolvable reference to symbol nco_cmp_glb_get: it's probably a plugin +dpkg-shlibdeps: warning: debian/nco/usr/lib/nco/libnco-5.3.6.so contains an unresolvable reference to symbol nco_bnr_cnv_get: it's probably a plugin dpkg-shlibdeps: warning: 14 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--buildsystem=autoconf dh_gencontrol -O--buildsystem=autoconf @@ -2478,12 +2097,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1473284/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/591843 and its subdirectories -I: Current time: Sun Nov 2 19:43:27 -12 2025 -I: pbuilder-time-stamp: 1762155807 +I: removing directory /srv/workspace/pbuilder/1473284 and its subdirectories +I: Current time: Mon Dec 7 04:09:52 +14 2026 +I: pbuilder-time-stamp: 1796566192