Diff of the two buildlogs: -- --- b1/build.log 2025-08-15 01:31:54.837537080 +0000 +++ b2/build.log 2025-08-15 01:35:41.549826553 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Aug 14 13:27:11 -12 2025 -I: pbuilder-time-stamp: 1755221231 +I: Current time: Thu Sep 17 21:54:56 +14 2026 +I: pbuilder-time-stamp: 1789631696 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -31,53 +31,85 @@ dpkg-source: info: applying pr1452.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1330720/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 17 07:55 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='d9a0f23eb7b74b8da3f5c70222823319' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1330720' - PS1='# ' - PS2='> ' + INVOCATION_ID=c5b9731358bb4c4da4fcc33f0ba4a53d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3077337 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0HwZVii2/pbuilderrc_Hs4s --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0HwZVii2/b1 --logfile b1/build.log python-cobra_0.29.1-3.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.0HwZVii2/pbuilderrc_tRvq --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.0HwZVii2/b2 --logfile b2/build.log python-cobra_0.29.1-3.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1330720/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -385,7 +417,7 @@ Get: 216 http://deb.debian.org/debian forky/main arm64 python3-ruamel.yaml all 0.18.10+ds-1 [147 kB] Get: 217 http://deb.debian.org/debian forky/main arm64 python3-sbml5 arm64 5.20.4+dfsg-0.1 [3114 kB] Get: 218 http://deb.debian.org/debian forky/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] -Fetched 145 MB in 1s (111 MB/s) +Fetched 145 MB in 1s (189 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19963 files and directories currently installed.) @@ -1084,8 +1116,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Aug 15 01:27:49 UTC 2025. -Universal Time is now: Fri Aug 15 01:27:49 UTC 2025. +Local time is now: Thu Sep 17 07:55:28 UTC 2026. +Universal Time is now: Thu Sep 17 07:55:28 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1298,7 +1330,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-cobra-0.29.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cobra_0.29.1-3_source.changes dpkg-buildpackage: info: source package python-cobra dpkg-buildpackage: info: source version 0.29.1-3 dpkg-buildpackage: info: source distribution unstable @@ -1713,43 +1749,43 @@ --------------------------------------------------------------------------------------------------------------------- benchmark: 31 tests ---------------------------------------------------------------------------------------------------------------------- Name (time in us) Min Max Mean StdDev Median IQR Outliers OPS Rounds Iterations ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -test_subtract_metabolite_benchmark[cplex] 2.4400 (1.0) 23.0000 (1.47) 2.5481 (1.0) 0.3357 (1.13) 2.5200 (1.0) 0.0400 (1.0) 22;377 392,446.4261 (1.0) 4935 1 -test_subtract_metabolite_benchmark[glpk] 2.4400 (1.0) 15.6000 (1.0) 2.5595 (1.00) 0.2977 (1.0) 2.5210 (1.00) 0.0400 (1.0) 20;412 390,703.8528 (1.00) 4884 1 -test_subtract_metabolite_benchmark[gurobi] 2.4400 (1.0) 35.2800 (2.26) 2.5724 (1.01) 0.5180 (1.74) 2.5600 (1.02) 0.0400 (1.0) 24;546 388,743.7218 (0.99) 4953 1 -test_achr_sample_benchmark 180.4420 (73.95) 4,447.1090 (285.07) 233.3965 (91.60) 327.1090 (>1000.0) 188.1610 (74.67) 13.5600 (338.85) 24;138 4,284.5536 (0.01) 1148 1 -test_change_objective_benchmark[optlang-glpk] 225.0820 (92.25) 11,900.1560 (762.83) 263.6684 (103.48) 426.4943 (>1000.0) 235.6215 (93.50) 14.3200 (357.84) 9;196 3,792.6425 (0.01) 2770 1 -test_optgp_sample_benchmark 286.1220 (117.26) 7,678.4490 (492.21) 338.9846 (133.03) 278.7496 (936.49) 296.7220 (117.75) 23.9400 (598.23) 44;136 2,949.9862 (0.01) 1492 1 -test_loopless_benchmark_after 1,183.9670 (485.24) 9,812.7430 (629.02) 2,061.2255 (808.92) 1,688.6878 (>1000.0) 1,267.4685 (502.96) 196.5610 (>1000.0) 60;60 485.1483 (0.00) 336 1 -test_loopless_benchmark_before 5,237.1130 (>1000.0) 14,173.3310 (908.55) 5,697.4914 (>1000.0) 1,388.0084 (>1000.0) 5,365.8740 (>1000.0) 94.4202 (>1000.0) 5;13 175.5158 (0.00) 113 1 -test_minimal_medium_mip_benchmark 6,782.9630 (>1000.0) 15,702.2600 (>1000.0) 7,470.1348 (>1000.0) 1,488.0694 (>1000.0) 6,992.2650 (>1000.0) 504.6230 (>1000.0) 4;11 133.8664 (0.00) 80 1 -test_minimal_medium_linear_benchmark 7,039.0450 (>1000.0) 16,085.0230 (>1000.0) 8,140.0164 (>1000.0) 2,311.1465 (>1000.0) 7,255.5060 (>1000.0) 529.1630 (>1000.0) 9;12 122.8499 (0.00) 84 1 -test_copy_benchmark[optlang-glpk] 13,141.3640 (>1000.0) 771,894.8600 (>1000.0) 28,414.8334 (>1000.0) 88,570.6081 (>1000.0) 13,781.2880 (>1000.0) 8,804.0170 (>1000.0) 1;3 35.1929 (0.00) 73 1 -test_gpr_equality_benchmark 18,365.3170 (>1000.0) 45,667.5720 (>1000.0) 25,970.9872 (>1000.0) 11,014.4486 (>1000.0) 18,567.1790 (>1000.0) 22,647.9645 (>1000.0) 13;0 38.5045 (0.00) 44 1 -test_deepcopy_benchmark 22,089.3010 (>1000.0) 970,507.4920 (>1000.0) 56,241.2465 (>1000.0) 155,031.7510 (>1000.0) 22,587.0650 (>1000.0) 21,623.2087 (>1000.0) 1;1 17.7805 (0.00) 37 1 -test_single_reaction_deletion_benchmark[glpk] 24,827.9990 (>1000.0) 54,321.4680 (>1000.0) 27,731.6000 (>1000.0) 7,525.5024 (>1000.0) 24,924.2400 (>1000.0) 102.5002 (>1000.0) 4;6 36.0599 (0.00) 39 1 -test_fastcc_benchmark[glpk] 57,348.4070 (>1000.0) 971,274.1760 (>1000.0) 114,655.3173 (>1000.0) 220,830.6060 (>1000.0) 58,503.0950 (>1000.0) 4,162.3867 (>1000.0) 1;4 8.7218 (0.00) 17 1 -test_add_metabolite_benchmark[cplex] 64,845.9350 (>1000.0) 135,091.1840 (>1000.0) 81,128.9392 (>1000.0) 24,089.0947 (>1000.0) 68,159.1360 (>1000.0) 18,571.0800 (>1000.0) 2;2 12.3261 (0.00) 10 1 -test_add_metabolite_benchmark[glpk] 65,221.2970 (>1000.0) 142,187.2700 (>1000.0) 95,682.7774 (>1000.0) 37,415.9028 (>1000.0) 72,347.5230 (>1000.0) 73,312.8890 (>1000.0) 3;0 10.4512 (0.00) 8 1 -test_add_metabolite_benchmark[gurobi] 65,538.5800 (>1000.0) 140,893.9410 (>1000.0) 123,035.4384 (>1000.0) 28,513.7058 (>1000.0) 134,738.1430 (>1000.0) 3,416.8728 (>1000.0) 2;2 8.1277 (0.00) 11 1 -test_gpr_symbolism_benchmark 112,639.2410 (>1000.0) 119,400.7240 (>1000.0) 116,077.4286 (>1000.0) 2,974.2882 (>1000.0) 115,167.5770 (>1000.0) 5,580.9055 (>1000.0) 3;0 8.6149 (0.00) 7 1 -test_achr_init_benchmark 116,525.9460 (>1000.0) 154,375.9480 (>1000.0) 131,237.8178 (>1000.0) 14,696.4321 (>1000.0) 125,271.0420 (>1000.0) 23,397.2907 (>1000.0) 3;0 7.6198 (0.00) 9 1 -test_optgp_init_benchmark 117,589.4720 (>1000.0) 146,866.0600 (>1000.0) 130,490.6150 (>1000.0) 9,356.4270 (>1000.0) 129,590.9490 (>1000.0) 437.5620 (>1000.0) 2;2 7.6634 (0.00) 6 1 -test_single_gene_deletion_linear_moma_benchmark[glpk] 166,877.3080 (>1000.0) 178,960.9460 (>1000.0) 171,017.4946 (>1000.0) 4,676.8996 (>1000.0) 169,432.8840 (>1000.0) 4,623.0993 (>1000.0) 1;0 5.8474 (0.00) 5 1 -test_double_gene_deletion_benchmark 234,679.4620 (>1000.0) 441,911.3090 (>1000.0) 293,004.2034 (>1000.0) 85,834.6557 (>1000.0) 264,416.4520 (>1000.0) 87,875.4827 (>1000.0) 1;0 3.4129 (0.00) 5 1 -test_single_gene_deletion_linear_room_benchmark[glpk] 235,580.0270 (>1000.0) 303,880.4240 (>1000.0) 253,923.1048 (>1000.0) 28,968.2468 (>1000.0) 237,802.3220 (>1000.0) 29,826.5010 (>1000.0) 1;0 3.9382 (0.00) 5 1 -test_pfba_benchmark[glpk] 289,003.5290 (>1000.0) 674,871.1190 (>1000.0) 405,338.9218 (>1000.0) 171,948.8809 (>1000.0) 291,420.1850 (>1000.0) 240,088.5870 (>1000.0) 1;0 2.4671 (0.00) 5 1 -test_flux_variability_loopless_benchmark[glpk] 290,926.7420 (>1000.0) 371,668.4590 (>1000.0) 346,169.9756 (>1000.0) 33,253.5951 (>1000.0) 359,684.8620 (>1000.0) 41,579.8265 (>1000.0) 1;0 2.8888 (0.00) 5 1 -test_copy_benchmark_large_model[optlang-glpk] 319,341.5240 (>1000.0) 1,386,967.2370 (>1000.0) 717,412.4074 (>1000.0) 440,898.6525 (>1000.0) 694,574.8850 (>1000.0) 662,872.7825 (>1000.0) 1;0 1.3939 (0.00) 5 1 -test_geometric_fba_benchmark[glpk] 394,662.8850 (>1000.0) 828,028.4190 (>1000.0) 632,687.4010 (>1000.0) 177,818.0939 (>1000.0) 662,475.8400 (>1000.0) 294,162.3322 (>1000.0) 2;0 1.5806 (0.00) 5 1 -test_flux_variability_benchmark[glpk] 431,442.8410 (>1000.0) 701,568.2900 (>1000.0) 519,587.0052 (>1000.0) 105,716.2540 (>1000.0) 490,742.7800 (>1000.0) 98,871.9625 (>1000.0) 1;0 1.9246 (0.00) 5 1 -test_single_gene_deletion_fba_benchmark[glpk] 448,359.3100 (>1000.0) 463,969.0490 (>1000.0) 456,063.6148 (>1000.0) 6,159.1442 (>1000.0) 456,007.7180 (>1000.0) 9,699.7315 (>1000.0) 2;0 2.1927 (0.00) 5 1 -test_double_reaction_deletion_benchmark 919,770.8070 (>1000.0) 1,018,460.8380 (>1000.0) 972,770.4820 (>1000.0) 40,006.0797 (>1000.0) 969,452.6050 (>1000.0) 64,892.2957 (>1000.0) 2;0 1.0280 (0.00) 5 1 +test_subtract_metabolite_benchmark[glpk] 2.4400 (1.0) 41.0400 (1.50) 2.5601 (1.00) 0.7717 (1.63) 2.5200 (1.0) 0.0400 (1.0) 12;390 390,604.5894 (1.00) 4486 1 +test_subtract_metabolite_benchmark[gurobi] 2.4400 (1.0) 27.4000 (1.0) 2.5597 (1.0) 0.4745 (1.0) 2.5200 (1.0) 0.0400 (1.0) 22;510 390,670.2355 (1.0) 4452 1 +test_subtract_metabolite_benchmark[cplex] 2.4400 (1.00) 36.0800 (1.32) 2.5980 (1.01) 0.5902 (1.24) 2.5600 (1.02) 0.0800 (2.00) 37;424 384,913.0056 (0.99) 4516 1 +test_achr_sample_benchmark 181.0800 (74.21) 315.1600 (11.50) 190.9559 (74.60) 10.9756 (23.13) 186.6400 (74.06) 5.5500 (138.69) 143;166 5,236.8119 (0.01) 1125 1 +test_change_objective_benchmark[optlang-glpk] 219.3600 (89.90) 791.2400 (28.88) 239.7129 (93.65) 28.0108 (59.03) 230.5200 (91.48) 15.2300 (380.58) 242;290 4,171.6575 (0.01) 3019 1 +test_optgp_sample_benchmark 280.6800 (115.03) 1,923.6000 (70.20) 297.4305 (116.20) 49.5033 (104.32) 288.4400 (114.46) 12.2600 (306.36) 26;176 3,362.1302 (0.01) 1491 1 +test_loopless_benchmark_after 1,226.5200 (502.68) 1,599.3200 (58.37) 1,299.1443 (507.54) 39.8726 (84.02) 1,296.4400 (514.46) 44.8600 (>1000.0) 64;7 769.7374 (0.00) 308 1 +test_loopless_benchmark_before 5,365.4800 (>1000.0) 5,836.8400 (213.02) 5,523.9596 (>1000.0) 75.2454 (158.56) 5,504.8800 (>1000.0) 81.6800 (>1000.0) 30;4 181.0296 (0.00) 111 1 +test_minimal_medium_mip_benchmark 7,588.9200 (>1000.0) 8,327.9600 (303.94) 7,751.2754 (>1000.0) 108.7548 (229.18) 7,746.2400 (>1000.0) 130.7100 (>1000.0) 17;2 129.0110 (0.00) 79 1 +test_minimal_medium_linear_benchmark 7,724.6400 (>1000.0) 9,097.9600 (332.04) 7,894.8932 (>1000.0) 155.8541 (328.43) 7,885.8400 (>1000.0) 107.9600 (>1000.0) 2;1 126.6642 (0.00) 79 1 +test_copy_benchmark[optlang-glpk] 13,439.7600 (>1000.0) 394,264.3600 (>1000.0) 20,433.8800 (>1000.0) 45,110.4550 (>1000.0) 13,790.9200 (>1000.0) 451.2000 (>1000.0) 1;12 48.9383 (0.00) 71 1 +test_gpr_equality_benchmark 19,253.3200 (>1000.0) 22,150.6400 (808.42) 19,993.6152 (>1000.0) 579.7679 (>1000.0) 19,904.8200 (>1000.0) 547.2400 (>1000.0) 9;4 50.0160 (0.00) 42 1 +test_deepcopy_benchmark 22,500.0800 (>1000.0) 601,950.6800 (>1000.0) 37,997.3609 (>1000.0) 87,067.8104 (>1000.0) 23,101.4400 (>1000.0) 3,277.3800 (>1000.0) 1;4 26.3176 (0.00) 44 1 +test_single_reaction_deletion_benchmark[glpk] 23,610.6000 (>1000.0) 23,906.4400 (872.50) 23,751.7834 (>1000.0) 62.7354 (132.20) 23,767.9600 (>1000.0) 95.7400 (>1000.0) 16;0 42.1021 (0.00) 41 1 +test_fastcc_benchmark[glpk] 57,021.7600 (>1000.0) 879,349.5600 (>1000.0) 118,382.8714 (>1000.0) 219,082.0038 (>1000.0) 57,775.9400 (>1000.0) 532.7200 (>1000.0) 1;3 8.4472 (0.00) 14 1 +test_add_metabolite_benchmark[gurobi] 66,309.2800 (>1000.0) 70,458.2000 (>1000.0) 66,872.8650 (>1000.0) 978.9535 (>1000.0) 66,624.1000 (>1000.0) 432.3200 (>1000.0) 1;1 14.9537 (0.00) 16 1 +test_add_metabolite_benchmark[cplex] 66,419.7200 (>1000.0) 68,337.0400 (>1000.0) 66,855.4613 (>1000.0) 521.3031 (>1000.0) 66,734.8800 (>1000.0) 256.0500 (>1000.0) 2;2 14.9576 (0.00) 15 1 +test_add_metabolite_benchmark[glpk] 66,858.0800 (>1000.0) 70,210.7600 (>1000.0) 67,602.7675 (>1000.0) 819.1562 (>1000.0) 67,334.6000 (>1000.0) 412.6800 (>1000.0) 2;2 14.7923 (0.00) 16 1 +test_optgp_init_benchmark 112,627.0800 (>1000.0) 125,785.5600 (>1000.0) 117,000.7067 (>1000.0) 5,168.1859 (>1000.0) 113,806.9600 (>1000.0) 6,486.8000 (>1000.0) 2;0 8.5470 (0.00) 9 1 +test_gpr_symbolism_benchmark 113,480.5600 (>1000.0) 142,677.9200 (>1000.0) 119,681.3689 (>1000.0) 8,947.9937 (>1000.0) 116,009.4000 (>1000.0) 4,719.2100 (>1000.0) 1;1 8.3555 (0.00) 9 1 +test_achr_init_benchmark 113,595.0800 (>1000.0) 927,804.4800 (>1000.0) 205,610.4445 (>1000.0) 270,845.2644 (>1000.0) 113,958.6000 (>1000.0) 3,406.1200 (>1000.0) 1;2 4.8636 (0.00) 9 1 +test_single_gene_deletion_linear_moma_benchmark[glpk] 168,270.8400 (>1000.0) 176,650.2400 (>1000.0) 170,225.6267 (>1000.0) 3,236.5801 (>1000.0) 168,953.2000 (>1000.0) 1,912.8400 (>1000.0) 1;1 5.8746 (0.00) 6 1 +test_single_gene_deletion_linear_room_benchmark[glpk] 235,896.2400 (>1000.0) 251,993.6800 (>1000.0) 239,963.3280 (>1000.0) 6,862.5103 (>1000.0) 236,626.4000 (>1000.0) 6,459.0400 (>1000.0) 1;0 4.1673 (0.00) 5 1 +test_double_gene_deletion_benchmark 237,244.9200 (>1000.0) 239,650.7600 (>1000.0) 237,996.9440 (>1000.0) 992.4984 (>1000.0) 237,686.9600 (>1000.0) 1,245.2000 (>1000.0) 1;0 4.2017 (0.00) 5 1 +test_single_gene_deletion_fba_benchmark[glpk] 253,290.6400 (>1000.0) 284,871.2000 (>1000.0) 274,691.9760 (>1000.0) 12,427.0784 (>1000.0) 278,277.1200 (>1000.0) 11,875.1500 (>1000.0) 1;0 3.6404 (0.00) 5 1 +test_flux_variability_loopless_benchmark[glpk] 268,172.7200 (>1000.0) 303,299.1600 (>1000.0) 282,921.8560 (>1000.0) 13,319.2561 (>1000.0) 279,944.3600 (>1000.0) 17,297.3500 (>1000.0) 2;0 3.5345 (0.00) 5 1 +test_pfba_benchmark[glpk] 290,533.6000 (>1000.0) 626,410.1200 (>1000.0) 358,693.6160 (>1000.0) 149,660.2689 (>1000.0) 292,371.0800 (>1000.0) 84,754.5300 (>1000.0) 1;1 2.7879 (0.00) 5 1 +test_copy_benchmark_large_model[optlang-glpk] 322,688.7600 (>1000.0) 830,494.1200 (>1000.0) 515,029.5600 (>1000.0) 260,217.7430 (>1000.0) 329,168.4400 (>1000.0) 458,698.7800 (>1000.0) 1;0 1.9416 (0.00) 5 1 +test_geometric_fba_benchmark[glpk] 388,778.5200 (>1000.0) 394,710.4000 (>1000.0) 390,800.1360 (>1000.0) 2,270.4847 (>1000.0) 390,081.0400 (>1000.0) 1,701.0700 (>1000.0) 1;1 2.5589 (0.00) 5 1 +test_flux_variability_benchmark[glpk] 440,899.1600 (>1000.0) 464,043.0000 (>1000.0) 450,544.3360 (>1000.0) 11,870.6924 (>1000.0) 443,234.1200 (>1000.0) 21,836.5300 (>1000.0) 2;0 2.2195 (0.00) 5 1 +test_double_reaction_deletion_benchmark 834,182.6400 (>1000.0) 1,020,287.0800 (>1000.0) 949,487.0320 (>1000.0) 82,337.6489 (>1000.0) 996,230.7600 (>1000.0) 132,842.7400 (>1000.0) 1;0 1.0532 (0.00) 5 1 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Legend: Outliers: 1 Standard Deviation from Mean; 1.5 IQR (InterQuartile Range) from 1st Quartile and 3rd Quartile. OPS: Operations Per Second, computed as 1 / Mean -==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 158.41s (0:02:38) ==== +==== 516 passed, 27 skipped, 11 xfailed, 5494 warnings in 123.94s (0:02:03) ==== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -2070,12 +2106,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3077337/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1330720 and its subdirectories -I: Current time: Thu Aug 14 13:31:54 -12 2025 -I: pbuilder-time-stamp: 1755221514 +I: removing directory /srv/workspace/pbuilder/3077337 and its subdirectories +I: Current time: Thu Sep 17 21:58:40 +14 2026 +I: pbuilder-time-stamp: 1789631920