Diff of the two buildlogs: -- --- b1/build.log 2025-09-14 04:19:52.356304951 +0000 +++ b2/build.log 2025-09-14 04:23:28.928580672 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 16 22:40:38 -12 2026 -I: pbuilder-time-stamp: 1792233638 +I: Current time: Sun Sep 14 18:19:54 +14 2025 +I: pbuilder-time-stamp: 1757823594 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -31,53 +31,85 @@ dpkg-source: info: applying numpy2.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2667402/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 14 04:20 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='58a8cc147c3c4361b45c5201e930cfdb' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2667402' - PS1='# ' - PS2='> ' + INVOCATION_ID=69d1e4e8ae6b43f1b2d406d19b1cc173 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=732214 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j13qBxv5/pbuilderrc_CSJ2 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j13qBxv5/b1 --logfile b1/build.log python-pbcore_2.1.2+dfsg-12.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j13qBxv5/pbuilderrc_uhoI --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j13qBxv5/b2 --logfile b2/build.log python-pbcore_2.1.2+dfsg-12.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2667402/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -348,7 +380,7 @@ Get: 199 http://deb.debian.org/debian forky/main arm64 sphinx-common all 8.2.3-6 [619 kB] Get: 200 http://deb.debian.org/debian forky/main arm64 python3-sphinx all 8.2.3-6 [477 kB] Get: 201 http://deb.debian.org/debian forky/main arm64 python3-xmlschema all 4.1.0-1 [262 kB] -Fetched 78.7 MB in 0s (177 MB/s) +Fetched 78.7 MB in 1s (109 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -1006,8 +1038,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Oct 17 10:41:06 UTC 2026. -Universal Time is now: Sat Oct 17 10:41:06 UTC 2026. +Local time is now: Sun Sep 14 04:20:39 UTC 2025. +Universal Time is now: Sun Sep 14 04:20:39 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libfontenc1:arm64 (1:1.1.8-1+b2) ... @@ -1199,7 +1231,11 @@ fakeroot is already the newest version (1.37.1.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-12_source.changes +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-pbcore-2.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-pbcore_2.1.2+dfsg-12_source.changes dpkg-buildpackage: info: source package python-pbcore dpkg-buildpackage: info: source version 2.1.2+dfsg-12 dpkg-buildpackage: info: source distribution unstable @@ -1217,8 +1253,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1235,8 +1271,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1275,8 +1311,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1293,8 +1329,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1311,8 +1347,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1329,8 +1365,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -1611,286 +1647,286 @@ scheduling tests via LoadScopeScheduling -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration -tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -[gw6] [ 0%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse -tests/test_pbdataset_split.py::TestDataSetSplit::test_split -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -[gw8] [ 1%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs -[gw11] [ 2%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 -[gw3] [ 2%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 +[gw11] [ 0%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq1 tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -[gw11] [ 3%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 -[gw4] [ 4%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +[gw2] [ 1%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__init__ +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +[gw5] [ 2%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +[gw8] [ 2%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +[gw4] [ 3%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +[gw4] [ 4%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ +[gw6] [ 5%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName -[gw4] [ 5%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName +[gw6] [ 5%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByName tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -[gw5] [ 5%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__init__ -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -[gw5] [ 6%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test__str__ -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -[gw5] [ 7%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -[gw7] [ 7%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -[gw7] [ 8%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification -tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw7] [ 9%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString -[gw4] [ 10%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById -[gw5] [ 10%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 -[gw9] [ 11%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -[gw8] [ 12%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +[gw6] [ 6%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessById +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +[gw6] [ 7%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ -[gw3] [ 12%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ +[gw2] [ 7%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test__str__ tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString -[gw3] [ 13%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString +[gw2] [ 8%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_fromString tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 -[gw3] [ 14%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 +[gw2] [ 9%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement1 tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -[gw5] [ 15%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +[gw2] [ 10%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +[gw2] [ 10%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len +[gw7] [ 11%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_str +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +[gw7] [ 12%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_modification +tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +[gw7] [ 12%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_fromString +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +[gw4] [ 13%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_fromString +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 +[gw4] [ 14%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement1 tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement -[gw6] [ 15%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement +[gw5] [ 15%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement -[gw6] [ 16%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement +[gw5] [ 15%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverseComplement tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac -[gw6] [ 17%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +tests/test_pbdataset_split.py::TestDataSetSplit::test_split +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +[gw8] [ 16%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_merge_gffs_sorted +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +[gw8] [ 17%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff +[gw11] [ 17%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq2 +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +[gw2] [ 18%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +[gw5] [ 19%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_iupac tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -[gw6] [ 17%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error -[gw3] [ 18%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_reverse_complement2 -[gw2] [ 19%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation -[gw4] [ 20%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testAccessByPosition -[gw8] [ 20%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_sort_gff -[gw2] [ 21%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw5] [ 20%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_complement_error +[gw3] [ 20%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -[gw11] [ 22%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName -[gw2] [ 22%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName -[gw5] [ 23%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len -tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -[gw3] [ 24%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_len -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq -[gw3] [ 25%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_eq +[gw11] [ 21%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqWriter::test_writeFastq3 tests/test_pbcore_io_FofnIO.py::test_simple -[gw9] [ 25%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -[gw4] [ 26%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice -[gw1] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +[gw4] [ 22%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_reverse_complement2 +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw4] [ 22%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_len +[gw10] [ 23%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +[gw6] [ 24%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testSlice tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -[gw11] [ 27%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple +[gw11] [ 25%] PASSED tests/test_pbcore_io_FofnIO.py::test_simple +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation +[gw3] [ 25%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testStrandOrientation +tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq +[gw4] [ 26%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq tests/test_pbcore_io_FofnIO.py::test_empty_lines -[gw5] [ 28%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_eq -[gw11] [ 29%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines -tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw9] [ 30%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix -[gw2] [ 30%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +[gw11] [ 27%] PASSED tests/test_pbcore_io_FofnIO.py::test_empty_lines +[gw0] [ 27%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations +tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName +[gw3] [ 28%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadName +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +[gw2] [ 29%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +tests/test_pbcore_io_BlasrIO.py::test_m4 +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +[gw8] [ 30%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get -[gw7] [ 31%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get +[gw7] [ 30%] PASSED tests/test_pbcore_io_GffIO.py::TestGff3Record::test_get tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -[gw8] [ 32%] PASSED tests/test_pbcore_io_GffIO.py::TestGffSorting::test_empty_file -[gw1] [ 32%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -[gw10] [ 33%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -[gw7] [ 34%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -[gw2] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -[gw1] [ 35%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming -[gw2] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference -[gw10] [ 37%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +[gw0] [ 31%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testStrandOrientation +[gw3] [ 32%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedRead +[gw10] [ 32%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +[gw7] [ 33%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testBasicOperations +[gw2] [ 34%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties +[gw5] [ 35%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error +tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -[gw2] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference -[gw1] [ 38%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -[gw6] [ 39%] PASSED tests/test_pbcore_util_sequences.py::TestReverseComplement::test_reverse_complement_error -tests/test_pbcore_io_BlasrIO.py::test_m4 -tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal -[gw3] [ 40%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqRecord::test_not_equal +[gw4] [ 35%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -[gw5] [ 40%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaRecord::test_not_equal -tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -[gw4] [ 41%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta -[gw8] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties -[gw2] [ 42%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw10] [ 43%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire -[gw6] [ 44%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m4 -[gw2] [ 45%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript -[gw5] [ 45%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -[gw3] [ 46%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -[gw1] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead -[gw2] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -[gw4] [ 48%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs -[gw4] [ 49%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw8] [ 36%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_retrieve_read_group_properties tests/test_pbcore_io_FofnIO.py::test_absolutifying -[gw11] [ 50%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +[gw0] [ 37%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadName +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +[gw6] [ 37%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +[gw11] [ 38%] PASSED tests/test_pbcore_io_FofnIO.py::test_absolutifying +tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -[gw9] [ 50%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges -tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -[gw9] [ 51%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers -[gw1] [ 52%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference -[gw11] [ 52%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 -tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names -tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +[gw5] [ 39%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_readFasta +tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +[gw11] [ 40%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq1 +[gw4] [ 40%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta1 tests/test_pbcore_io_BlasrIO.py::test_m5 -[gw6] [ 53%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 -[gw8] [ 54%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +[gw2] [ 41%] PASSED tests/test_pbcore_io_BlasrIO.py::test_m5 +tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw2] [ 42%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test_headers +[gw10] [ 42%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_dsIdToSuffix +[gw0] [ 43%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedRead +[gw3] [ 44%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedRead +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw6] [ 45%] PASSED tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_readWeirdFastaIndex +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw9] [ 45%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -[gw3] [ 55%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 -[gw7] [ 55%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -tests/test_dataset_run_split.py::test -[gw1] [ 56%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -[gw6] [ 57%] SKIPPED tests/test_dataset_run_split.py::test -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -[gw10] [ 57%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index -tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv -[gw10] [ 58%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names +[gw8] [ 46%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMultipleReadGroups::test_sample_names tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw8] [ 59%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations -[gw1] [ 60%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV -[gw7] [ 60%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader -[gw5] [ 61%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta -tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -[gw3] [ 62%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -[gw1] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript -tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -[gw4] [ 63%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii -[gw5] [ 64%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam -[gw4] [ 65%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw0] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedRead +[gw3] [ 47%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testAlignedReference +[gw6] [ 48%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testAsciiFromQvs +[gw9] [ 49%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +[gw5] [ 50%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaReader::test_dosLineEndingsFasta tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 -[gw11] [ 65%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw8] [ 50%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testInvalidOperations +[gw11] [ 51%] PASSED tests/test_pbcore_io_FastqIO.py::TestFastqReader::test_readFastq2 +[gw4] [ 52%] PASSED tests/test_pbcore_io_FastaIO.py::TestFastaWriter::test_writeFasta2 +tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -[gw9] [ 66%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ -tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +[gw7] [ 52%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable +[gw11] [ 53%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestTranscriptBam::test_transcript_set_support +[gw2] [ 54%] PASSED tests/test_pbcore_io_GffIO.py::TestGffReader::test__iter__ +[gw5] [ 55%] PASSED tests/test_pbcore_util.py::TestStatistics::test_accuracy_as_phred_qv +[gw10] [ 55%] PASSED tests/test_pbdataset_utils.py::TestDataSetUtils::test_divideKeys_keysToRanges +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +[gw3] [ 56%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testUnalignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV +[gw0] [ 57%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testAlignedReference +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire +[gw9] [ 57%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_streaming_entire +tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +tests/test_dataset_run_split.py::test +[gw4] [ 58%] SKIPPED tests/test_dataset_run_split.py::test +tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +[gw7] [ 59%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeHeader +tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +[gw6] [ 60%] PASSED tests/test_pbcore_io_FastqIO.py::TestQvConversion::testQvsFromAscii +[gw2] [ 60%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties +tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw10] [ 61%] PASSED tests/test_pbcore_extract_bam_sequence.py::TestCase::test_reverse_complement +[gw0] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testUnalignedReference +[gw3] [ 62%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testDeletionQV +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +[gw8] [ 63%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw1] [ 67%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments -[gw11] [ 67%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 -tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange -tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -[gw10] [ 68%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy -[gw7] [ 69%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord -[gw6] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range -[gw3] [ 70%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping -tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd -[gw8] [ 71%] PASSED tests/test_pbcore_io_unaligned_bam.py::TestUnalignedBam::testIpd +[gw6] [ 64%] SKIPPED tests/test_pbcore_io_lossless_bam.py::TestCase::test_1 +tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range +[gw11] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestEmptyBam::test_empty_bam_reads_in_range tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -[gw5] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestMissingHeaderM5::test_retrieve_read_group_properties -[gw4] [ 72%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -[gw0] [ 73%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +[gw3] [ 65%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testTranscript +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +[gw9] [ 66%] PASSED tests/test_pbindex.py::TestPbIndex::test_pbindex_with_zmw_index +[gw5] [ 67%] PASSED tests/test_pbcore_util.py::TestStatistics::test_phred_qv_as_accuracy +[gw4] [ 67%] PASSED tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted +[gw0] [ 68%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testDeletionQV +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +[gw0] [ 69%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testTranscript +tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +[gw10] [ 70%] SKIPPED tests/test_pbcore_io_AlnFileReaders.py::TestBarcodedBam::test_read_lima_demultiplexed_bam +tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +[gw7] [ 70%] PASSED tests/test_pbcore_io_GffIO.py::TestGffWriter::test_writeRecord +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments +tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw2] [ 71%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestUpdatedChemistryMapping::test_load_updated_mapping +[gw3] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testClippedAlignments +[gw0] [ 72%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testClippedAlignments +tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +[gw1] [ 73%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -[gw2] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange +[gw3] [ 74%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable +[gw3] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry -[gw2] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry +[gw3] [ 75%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion -[gw2] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion +[gw3] [ 76%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testSpecVersion tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore -[gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +[gw1] [ 77%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +[gw3] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadScore +tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default -[gw2] [ 77%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default +[gw3] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_sample_name_default tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw2] [ 78%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default -[gw1] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +[gw3] [ 79%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::test_library_name_default +[gw0] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable -[gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable +[gw0] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadGroupTable tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry -[gw1] [ 80%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry +[gw0] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testSequencingChemistry tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV -[gw1] [ 81%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV +[gw0] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testMapQV tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -[gw0] [ 82%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -[gw1] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers +[gw0] [ 82%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts -[gw1] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts +[gw0] [ 83%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testErrorCounts tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName -[gw1] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName +[gw0] [ 84%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsByName tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam -[gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam +[gw0] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_empty_bam tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -[gw1] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +[gw0] [ 85%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw1] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -[gw0] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +[gw0] [ 86%] PASSED tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +[gw1] [ 87%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws -[gw0] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws +[gw1] [ 87%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_large_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws -[gw0] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws +[gw1] [ 88%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters -[gw0] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters +[gw1] [ 89%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_simple_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters -[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters +[gw1] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_existing_filters tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split -[gw0] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split +[gw1] [ 90%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_movie_split tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references -[gw0] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references +[gw1] [ 91%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_references tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter -[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter +[gw1] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_multi_movie_split_zmws_with_existing_movie_filter tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit -[gw0] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit +[gw1] [ 92%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_presplit tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -[gw0] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +[gw1] [ 93%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -[gw0] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +[gw1] [ 94%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -[gw0] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows +[gw1] [ 95%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split -[gw0] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split +[gw1] [ 95%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_huge_zmw_split tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -[gw0] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name +[gw1] [ 96%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split -[gw0] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +[gw1] [ 97%] PASSED tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded -[gw0] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded +[gw1] [ 97%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_isBarcoded tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases -[gw0] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases +[gw1] [ 98%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_cornercases tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks -[gw0] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks +[gw1] [ 99%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_barcode_split_maxChunks tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups -[gw0] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups +[gw1] [100%] SKIPPED tests/test_pbdataset_split.py::TestDataSetSplit::test_split_read_groups =============================== warnings summary =============================== tests/test_pbcore_io_FastqIO.py: 11 warnings @@ -1915,8 +1951,8 @@ /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:368: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return y.tostring().decode("ascii") -tests/test_pbcore_io_AlnFileReaders.py: 118 warnings tests/test_pbcore_extract_bam_sequence.py: 1 warning +tests/test_pbcore_io_AlnFileReaders.py: 118 warnings /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/pbcore/io/align/BamAlignment.py:356: DeprecationWarning: tostring() is deprecated. Use tobytes() instead. return _gusfieldTrans[uc].tostring().decode("ascii") @@ -1938,27 +1974,27 @@ Coverage XML written to file coverage.xml ============================= slowest 20 durations ============================= -0.48s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks -0.35s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize -0.29s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +0.63s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split_and_maxChunks +0.52s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split +0.39s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws_targetsize +0.35s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testReadsInRange +0.29s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange 0.25s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split -0.23s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws -0.22s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_by_contigs_with_split -0.17s call tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testReadsInRange -0.10s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +0.24s call tests/test_pbdataset_split.py::TestDataSetSplit::test_split_zmws +0.12s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed +0.11s call tests/test_pbdataset_split.py::TestDataSetSplit::test_contigset_split +0.11s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency +0.07s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations 0.07s call tests/test_pbdataset_split.py::TestDataSetSplit::test_refWindows -0.06s call tests/test_pbindex.py::TestPbIndex::test_pbindex_bam_consistency -0.06s setup tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testBasicOperations -0.05s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity_unindexed -0.03s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations -0.03s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +0.06s setup tests/test_pbcore_io_AlnFileReaders.py::TestBasicBam::testBasicOperations +0.06s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid +0.05s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity +0.05s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::test_dosLineEndingsFasta +0.04s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers 0.03s call tests/test_pbdataset_split.py::TestDataSetSplit::test_subreadset_split_metadata_element_name -0.03s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_uuid -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::test_alignment_identity -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestIndexedBam::testHoleNumbers -0.02s setup tests/test_pbcore_io_VcfIO.py::TestVcfSorting::test_merge_vcfs_sorted -0.02s call tests/test_pbcore_io_AlnFileReaders.py::TestCCSBam::testQStartEndUnavailable -================ 122 passed, 18 skipped, 461 warnings in 6.36s ================= +0.02s call tests/test_pbdataset_utils.py::TestDataSetUtils::test_get_dataset_metatype +0.01s call tests/test_pbcore_io_FastaTable.py::TestIndexedFastaReader::testIteration +================ 122 passed, 18 skipped, 461 warnings in 7.10s ================= I: pybuild pybuild:334: rm -rfv /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/coverage.xml /build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/nosetests.xml removed '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/coverage.xml' removed '/build/reproducible-path/python-pbcore-2.1.2+dfsg/.pybuild/cpython3_3.13_pbcore/build/nosetests.xml' @@ -1982,8 +2018,8 @@ Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -2000,8 +2036,8 @@ versions. Please use the underscore name 'description_file' instead. (Affected: pbcore). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Mar-03, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** @@ -2343,12 +2379,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/732214/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2667402 and its subdirectories -I: Current time: Fri Oct 16 22:42:51 -12 2026 -I: pbuilder-time-stamp: 1792233771 +I: removing directory /srv/workspace/pbuilder/732214 and its subdirectories +I: Current time: Sun Sep 14 18:23:28 +14 2025 +I: pbuilder-time-stamp: 1757823808