Diff of the two buildlogs: -- --- b1/build.log 2025-09-04 12:53:53.112699458 +0000 +++ b2/build.log 2025-09-04 12:55:51.976849392 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 4 00:51:51 -12 2025 -I: pbuilder-time-stamp: 1756990311 +I: Current time: Thu Oct 8 09:16:55 +14 2026 +I: pbuilder-time-stamp: 1791400615 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3967571/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 7 19:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='d1330142d3574e7bb065363635d97f32' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3967571' - PS1='# ' - PS2='> ' + INVOCATION_ID=9731eb1bcbe9415dbe8021848c6d7416 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1970021 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mkDteiFg/pbuilderrc_V3Gc --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mkDteiFg/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mkDteiFg/pbuilderrc_S0ZO --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mkDteiFg/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.41+deb13-cloud-arm64 #1 SMP Debian 6.12.41-1 (2025-08-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3967571/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 70 http://deb.debian.org/debian forky/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 71 http://deb.debian.org/debian forky/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 72 http://deb.debian.org/debian forky/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] -Fetched 30.9 MB in 0s (78.3 MB/s) +Fetched 30.9 MB in 0s (125 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20011 files and directories currently installed.) @@ -499,7 +531,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -525,7 +561,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.7s) +-- Configuring done (0.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -552,16 +588,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 10%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp -[ 40%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp -[ 50%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o +[ 30%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 50%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -576,14 +612,14 @@ make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build -make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' +make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o +[ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp +[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 @@ -610,108 +646,108 @@ [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (2 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (2 ms) -[----------] 5 tests from RaconInitializeTest (9 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) +[----------] 5 tests from RaconInitializeTest (13 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000573 s -[racon::Polisher::initialize] loaded sequences 0.034848 s -[racon::Polisher::initialize] loaded overlaps 0.000350 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.042649 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.058334 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.076712 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.093593 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102350 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.112794 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.129576 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.168180 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.172495 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.180465 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.190471 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.213408 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.223127 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.233348 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.248301 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.258063 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.260885 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.267023 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.272114 s [racon::Polisher::initialize] aligning overlaps [====================] 0.284193 s -[racon::Polisher::initialize] transformed data into windows 0.001497 s -[racon::Polisher::polish] generating consensus [=> ] 0.046918 s [racon::Polisher::polish] generating consensus [==> ] 0.089066 s [racon::Polisher::polish] generating consensus [===> ] 0.116990 s [racon::Polisher::polish] generating consensus [====> ] 0.131834 s [racon::Polisher::polish] generating consensus [=====> ] 0.139547 s [racon::Polisher::polish] generating consensus [======> ] 0.152116 s [racon::Polisher::polish] generating consensus [=======> ] 0.163780 s [racon::Polisher::polish] generating consensus [========> ] 0.174747 s [racon::Polisher::polish] generating consensus [=========> ] 0.184696 s [racon::Polisher::polish] generating consensus [==========> ] 0.209831 s [racon::Polisher::polish] generating consensus [===========> ] 0.238829 s [racon::Polisher::polish] generating consensus [============> ] 0.274729 s [racon::Polisher::polish] generating consensus [=============> ] 0.317894 s [racon::Polisher::polish] generating consensus [==============> ] 0.366160 s [racon::Polisher::polish] generating consensus [===============> ] 0.403543 s [racon::Polisher::polish] generating consensus [================> ] 0.428923 s [racon::Polisher::polish] generating consensus [=================> ] 0.463204 s [racon::Polisher::polish] generating consensus [==================> ] 0.482456 s [racon::Polisher::polish] generating consensus [===================>] 0.502455 s [racon::Polisher::polish] generating consensus [====================] 0.597055 s -[racon::Polisher::] total = 0.940315 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (950 ms) +[racon::Polisher::initialize] loaded target sequences 0.000978 s +[racon::Polisher::initialize] loaded sequences 0.060986 s +[racon::Polisher::initialize] loaded overlaps 0.000353 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.045913 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.064829 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.083257 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.094919 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.107362 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.117435 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.140009 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.150043 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.158239 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.165314 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.175289 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.183845 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.193259 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.197971 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.204612 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.218828 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.223558 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.231241 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.241814 s [racon::Polisher::initialize] aligning overlaps [====================] 0.245224 s +[racon::Polisher::initialize] transformed data into windows 0.001339 s +[racon::Polisher::polish] generating consensus [=> ] 0.056432 s [racon::Polisher::polish] generating consensus [==> ] 0.092034 s [racon::Polisher::polish] generating consensus [===> ] 0.119732 s [racon::Polisher::polish] generating consensus [====> ] 0.134480 s [racon::Polisher::polish] generating consensus [=====> ] 0.146835 s [racon::Polisher::polish] generating consensus [======> ] 0.157321 s [racon::Polisher::polish] generating consensus [=======> ] 0.167160 s [racon::Polisher::polish] generating consensus [========> ] 0.178578 s [racon::Polisher::polish] generating consensus [=========> ] 0.194132 s [racon::Polisher::polish] generating consensus [==========> ] 0.210566 s [racon::Polisher::polish] generating consensus [===========> ] 0.238867 s [racon::Polisher::polish] generating consensus [============> ] 0.274265 s [racon::Polisher::polish] generating consensus [=============> ] 0.321818 s [racon::Polisher::polish] generating consensus [==============> ] 0.368412 s [racon::Polisher::polish] generating consensus [===============> ] 0.401594 s [racon::Polisher::polish] generating consensus [================> ] 0.425446 s [racon::Polisher::polish] generating consensus [=================> ] 0.455924 s [racon::Polisher::polish] generating consensus [==================> ] 0.473519 s [racon::Polisher::polish] generating consensus [===================>] 0.497300 s [racon::Polisher::polish] generating consensus [====================] 0.551668 s +[racon::Polisher::] total = 0.888160 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (900 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000537 s -[racon::Polisher::initialize] loaded sequences 0.011311 s -[racon::Polisher::initialize] loaded overlaps 0.000244 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.018060 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.029753 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.051374 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.069104 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.087391 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.097629 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.105223 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125594 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.143645 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157922 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.173560 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.191368 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.209547 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.210329 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.224592 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.231524 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.242965 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.252893 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.252960 s [racon::Polisher::initialize] aligning overlaps [====================] 0.262105 s -[racon::Polisher::initialize] transformed data into windows 0.000418 s -[racon::Polisher::polish] generating consensus [=> ] 0.055045 s [racon::Polisher::polish] generating consensus [==> ] 0.122423 s [racon::Polisher::polish] generating consensus [===> ] 0.170990 s [racon::Polisher::polish] generating consensus [====> ] 0.214990 s [racon::Polisher::polish] generating consensus [=====> ] 0.242784 s [racon::Polisher::polish] generating consensus [======> ] 0.259468 s [racon::Polisher::polish] generating consensus [=======> ] 0.283545 s [racon::Polisher::polish] generating consensus [========> ] 0.321323 s [racon::Polisher::polish] generating consensus [=========> ] 0.364485 s [racon::Polisher::polish] generating consensus [==========> ] 0.431732 s [racon::Polisher::polish] generating consensus [===========> ] 0.542072 s [racon::Polisher::polish] generating consensus [============> ] 0.714995 s [racon::Polisher::polish] generating consensus [=============> ] 0.801383 s [racon::Polisher::polish] generating consensus [==============> ] 0.890562 s [racon::Polisher::polish] generating consensus [===============> ] 0.937204 s [racon::Polisher::polish] generating consensus [================> ] 1.009884 s [racon::Polisher::polish] generating consensus [=================> ] 1.101259 s [racon::Polisher::polish] generating consensus [==================> ] 1.132093 s [racon::Polisher::polish] generating consensus [===================>] 1.168744 s [racon::Polisher::polish] generating consensus [====================] 1.232601 s -[racon::Polisher::] total = 1.517052 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1527 ms) +[racon::Polisher::initialize] loaded target sequences 0.000963 s +[racon::Polisher::initialize] loaded sequences 0.029896 s +[racon::Polisher::initialize] loaded overlaps 0.000639 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.039435 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.056479 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.068654 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.081707 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.089903 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.094848 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.112650 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.126647 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.130799 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.138028 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.147795 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.159910 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.165734 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.174287 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.185843 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.205495 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.210304 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.214815 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.219240 s [racon::Polisher::initialize] aligning overlaps [====================] 0.221796 s +[racon::Polisher::initialize] transformed data into windows 0.000656 s +[racon::Polisher::polish] generating consensus [=> ] 0.026791 s [racon::Polisher::polish] generating consensus [==> ] 0.057234 s [racon::Polisher::polish] generating consensus [===> ] 0.080070 s [racon::Polisher::polish] generating consensus [====> ] 0.100987 s [racon::Polisher::polish] generating consensus [=====> ] 0.124116 s [racon::Polisher::polish] generating consensus [======> ] 0.137424 s [racon::Polisher::polish] generating consensus [=======> ] 0.151195 s [racon::Polisher::polish] generating consensus [========> ] 0.166991 s [racon::Polisher::polish] generating consensus [=========> ] 0.185317 s [racon::Polisher::polish] generating consensus [==========> ] 0.215664 s [racon::Polisher::polish] generating consensus [===========> ] 0.249891 s [racon::Polisher::polish] generating consensus [============> ] 0.292230 s [racon::Polisher::polish] generating consensus [=============> ] 0.342931 s [racon::Polisher::polish] generating consensus [==============> ] 0.395006 s [racon::Polisher::polish] generating consensus [===============> ] 0.439865 s [racon::Polisher::polish] generating consensus [================> ] 0.482741 s [racon::Polisher::polish] generating consensus [=================> ] 0.525111 s [racon::Polisher::polish] generating consensus [==================> ] 0.547281 s [racon::Polisher::polish] generating consensus [===================>] 0.579782 s [racon::Polisher::polish] generating consensus [====================] 0.742172 s +[racon::Polisher::] total = 1.019674 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1032 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000435 s -[racon::Polisher::initialize] loaded sequences 0.026045 s -[racon::Polisher::initialize] loaded overlaps 0.015607 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.005137 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005149 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005818 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005829 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005833 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005837 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.005843 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005846 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005850 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005854 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005857 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.005861 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005865 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.005870 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.005874 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005878 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005883 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.005888 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.005893 s [racon::Polisher::initialize] aligning overlaps [====================] 0.005898 s -[racon::Polisher::initialize] transformed data into windows 0.001328 s -[racon::Polisher::polish] generating consensus [=> ] 0.030185 s [racon::Polisher::polish] generating consensus [==> ] 0.052731 s [racon::Polisher::polish] generating consensus [===> ] 0.070789 s [racon::Polisher::polish] generating consensus [====> ] 0.085942 s [racon::Polisher::polish] generating consensus [=====> ] 0.099303 s [racon::Polisher::polish] generating consensus [======> ] 0.106718 s [racon::Polisher::polish] generating consensus [=======> ] 0.121791 s [racon::Polisher::polish] generating consensus [========> ] 0.137730 s [racon::Polisher::polish] generating consensus [=========> ] 0.150984 s [racon::Polisher::polish] generating consensus [==========> ] 0.187071 s [racon::Polisher::polish] generating consensus [===========> ] 0.219868 s [racon::Polisher::polish] generating consensus [============> ] 0.245932 s [racon::Polisher::polish] generating consensus [=============> ] 0.293788 s [racon::Polisher::polish] generating consensus [==============> ] 0.326101 s [racon::Polisher::polish] generating consensus [===============> ] 0.368201 s [racon::Polisher::polish] generating consensus [================> ] 0.395427 s [racon::Polisher::polish] generating consensus [=================> ] 0.428313 s [racon::Polisher::polish] generating consensus [==================> ] 0.447676 s [racon::Polisher::polish] generating consensus [===================>] 0.466665 s [racon::Polisher::polish] generating consensus [====================] 0.556937 s -[racon::Polisher::] total = 0.616565 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (622 ms) +[racon::Polisher::initialize] loaded target sequences 0.000998 s +[racon::Polisher::initialize] loaded sequences 0.052975 s +[racon::Polisher::initialize] loaded overlaps 0.020798 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.005844 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.006066 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.006297 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.006575 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006761 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006954 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.007279 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007763 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007921 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.008118 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.008400 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008871 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.009051 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.009363 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.009692 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.009864 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.009925 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.009976 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.010084 s [racon::Polisher::initialize] aligning overlaps [====================] 0.010132 s +[racon::Polisher::initialize] transformed data into windows 0.001544 s +[racon::Polisher::polish] generating consensus [=> ] 0.058526 s [racon::Polisher::polish] generating consensus [==> ] 0.094852 s [racon::Polisher::polish] generating consensus [===> ] 0.123495 s [racon::Polisher::polish] generating consensus [====> ] 0.140195 s [racon::Polisher::polish] generating consensus [=====> ] 0.147583 s [racon::Polisher::polish] generating consensus [======> ] 0.157471 s [racon::Polisher::polish] generating consensus [=======> ] 0.168934 s [racon::Polisher::polish] generating consensus [========> ] 0.180325 s [racon::Polisher::polish] generating consensus [=========> ] 0.192825 s [racon::Polisher::polish] generating consensus [==========> ] 0.214373 s [racon::Polisher::polish] generating consensus [===========> ] 0.239720 s [racon::Polisher::polish] generating consensus [============> ] 0.273524 s [racon::Polisher::polish] generating consensus [=============> ] 0.317512 s [racon::Polisher::polish] generating consensus [==============> ] 0.364868 s [racon::Polisher::polish] generating consensus [===============> ] 0.406755 s [racon::Polisher::polish] generating consensus [================> ] 0.433273 s [racon::Polisher::polish] generating consensus [=================> ] 0.467122 s [racon::Polisher::polish] generating consensus [==================> ] 0.486887 s [racon::Polisher::polish] generating consensus [===================>] 0.486921 s [racon::Polisher::polish] generating consensus [====================] 0.585855 s +[racon::Polisher::] total = 0.699456 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (709 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000491 s -[racon::Polisher::initialize] loaded sequences 0.010994 s -[racon::Polisher::initialize] loaded overlaps 0.015206 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.004244 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004324 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.004448 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.004548 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004660 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004759 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004855 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.004936 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005051 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005142 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005208 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.005271 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.005329 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.005391 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.005455 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.005518 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.005585 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.005644 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.005705 s [racon::Polisher::initialize] aligning overlaps [====================] 0.005765 s -[racon::Polisher::initialize] transformed data into windows 0.000315 s -[racon::Polisher::polish] generating consensus [=> ] 0.048687 s [racon::Polisher::polish] generating consensus [==> ] 0.078442 s [racon::Polisher::polish] generating consensus [===> ] 0.098382 s [racon::Polisher::polish] generating consensus [====> ] 0.119686 s [racon::Polisher::polish] generating consensus [=====> ] 0.134276 s [racon::Polisher::polish] generating consensus [======> ] 0.142113 s [racon::Polisher::polish] generating consensus [=======> ] 0.156655 s [racon::Polisher::polish] generating consensus [========> ] 0.171116 s [racon::Polisher::polish] generating consensus [=========> ] 0.188409 s [racon::Polisher::polish] generating consensus [==========> ] 0.218307 s [racon::Polisher::polish] generating consensus [===========> ] 0.250445 s [racon::Polisher::polish] generating consensus [============> ] 0.288747 s [racon::Polisher::polish] generating consensus [=============> ] 0.354234 s [racon::Polisher::polish] generating consensus [==============> ] 0.396164 s [racon::Polisher::polish] generating consensus [===============> ] 0.443740 s [racon::Polisher::polish] generating consensus [================> ] 0.490068 s [racon::Polisher::polish] generating consensus [=================> ] 0.527707 s [racon::Polisher::polish] generating consensus [==================> ] 0.549410 s [racon::Polisher::polish] generating consensus [===================>] 0.574095 s [racon::Polisher::polish] generating consensus [====================] 0.694090 s -[racon::Polisher::] total = 0.734549 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (739 ms) +[racon::Polisher::initialize] loaded target sequences 0.000986 s +[racon::Polisher::initialize] loaded sequences 0.031614 s +[racon::Polisher::initialize] loaded overlaps 0.031305 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.002472 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.002683 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.002821 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003211 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.003363 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.003542 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.003815 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.004307 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.004387 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.004533 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.004548 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.004560 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.004572 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.004739 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.004758 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.004769 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.004782 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.004794 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.004917 s [racon::Polisher::initialize] aligning overlaps [====================] 0.004931 s +[racon::Polisher::initialize] transformed data into windows 0.000671 s +[racon::Polisher::polish] generating consensus [=> ] 0.060388 s [racon::Polisher::polish] generating consensus [==> ] 0.102305 s [racon::Polisher::polish] generating consensus [===> ] 0.139664 s [racon::Polisher::polish] generating consensus [====> ] 0.163601 s [racon::Polisher::polish] generating consensus [=====> ] 0.179155 s [racon::Polisher::polish] generating consensus [======> ] 0.179180 s [racon::Polisher::polish] generating consensus [=======> ] 0.194783 s [racon::Polisher::polish] generating consensus [========> ] 0.212972 s [racon::Polisher::polish] generating consensus [=========> ] 0.230038 s [racon::Polisher::polish] generating consensus [==========> ] 0.268160 s [racon::Polisher::polish] generating consensus [===========> ] 0.313429 s [racon::Polisher::polish] generating consensus [============> ] 0.350552 s [racon::Polisher::polish] generating consensus [=============> ] 0.405401 s [racon::Polisher::polish] generating consensus [==============> ] 0.462501 s [racon::Polisher::polish] generating consensus [===============> ] 0.510778 s [racon::Polisher::polish] generating consensus [================> ] 0.552715 s [racon::Polisher::polish] generating consensus [=================> ] 0.595490 s [racon::Polisher::polish] generating consensus [==================> ] 0.616988 s [racon::Polisher::polish] generating consensus [===================>] 0.641807 s [racon::Polisher::polish] generating consensus [====================] 0.730549 s +[racon::Polisher::] total = 0.806361 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (808 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000363 s -[racon::Polisher::initialize] loaded sequences 0.026068 s -[racon::Polisher::initialize] loaded overlaps 0.000214 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.015268 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.023273 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.033570 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.040796 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.050028 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.058501 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.078578 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.088690 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.096935 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.104202 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.114094 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.122678 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.137999 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.141109 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.155010 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.161690 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.173631 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.183071 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.187204 s [racon::Polisher::initialize] aligning overlaps [====================] 0.195328 s -[racon::Polisher::initialize] transformed data into windows 0.001268 s -[racon::Polisher::polish] generating consensus [=> ] 0.091670 s [racon::Polisher::polish] generating consensus [==> ] 0.091846 s [racon::Polisher::polish] generating consensus [===> ] 0.172547 s [racon::Polisher::polish] generating consensus [====> ] 0.172575 s [racon::Polisher::polish] generating consensus [=====> ] 0.213620 s [racon::Polisher::polish] generating consensus [======> ] 0.213642 s [racon::Polisher::polish] generating consensus [=======> ] 0.248340 s [racon::Polisher::polish] generating consensus [========> ] 0.248638 s [racon::Polisher::polish] generating consensus [=========> ] 0.306910 s [racon::Polisher::polish] generating consensus [==========> ] 0.306941 s [racon::Polisher::polish] generating consensus [===========> ] 0.415516 s [racon::Polisher::polish] generating consensus [============> ] 0.425406 s [racon::Polisher::polish] generating consensus [=============> ] 0.597273 s [racon::Polisher::polish] generating consensus [==============> ] 0.597290 s [racon::Polisher::polish] generating consensus [===============> ] 0.711794 s [racon::Polisher::polish] generating consensus [================> ] 0.711834 s [racon::Polisher::polish] generating consensus [=================> ] 0.813719 s [racon::Polisher::polish] generating consensus [==================> ] 0.844135 s [racon::Polisher::polish] generating consensus [===================>] 0.898089 s [racon::Polisher::polish] generating consensus [====================] 1.077665 s -[racon::Polisher::] total = 1.311643 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1350 ms) +[racon::Polisher::initialize] loaded target sequences 0.000366 s +[racon::Polisher::initialize] loaded sequences 0.025867 s +[racon::Polisher::initialize] loaded overlaps 0.000216 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.015282 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.023124 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.033294 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.040537 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.049771 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.060882 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.078449 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.088418 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.099075 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.109850 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.115963 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.129337 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.145038 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.148169 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.162061 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.168761 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.179930 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.190141 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.190724 s [racon::Polisher::initialize] aligning overlaps [====================] 0.198184 s +[racon::Polisher::initialize] transformed data into windows 0.001249 s +[racon::Polisher::polish] generating consensus [=> ] 0.091705 s [racon::Polisher::polish] generating consensus [==> ] 0.091866 s [racon::Polisher::polish] generating consensus [===> ] 0.171751 s [racon::Polisher::polish] generating consensus [====> ] 0.171783 s [racon::Polisher::polish] generating consensus [=====> ] 0.211911 s [racon::Polisher::polish] generating consensus [======> ] 0.211929 s [racon::Polisher::polish] generating consensus [=======> ] 0.245964 s [racon::Polisher::polish] generating consensus [========> ] 0.245996 s [racon::Polisher::polish] generating consensus [=========> ] 0.302774 s [racon::Polisher::polish] generating consensus [==========> ] 0.307397 s [racon::Polisher::polish] generating consensus [===========> ] 0.508620 s [racon::Polisher::polish] generating consensus [============> ] 0.508649 s [racon::Polisher::polish] generating consensus [=============> ] 0.687851 s [racon::Polisher::polish] generating consensus [==============> ] 0.687883 s [racon::Polisher::polish] generating consensus [===============> ] 0.801303 s [racon::Polisher::polish] generating consensus [================> ] 0.801372 s [racon::Polisher::polish] generating consensus [=================> ] 0.902364 s [racon::Polisher::polish] generating consensus [==================> ] 0.902386 s [racon::Polisher::polish] generating consensus [===================>] 0.985811 s [racon::Polisher::polish] generating consensus [====================] 1.066233 s +[racon::Polisher::] total = 1.301242 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1324 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000346 s -[racon::Polisher::initialize] loaded sequences 0.026296 s -[racon::Polisher::initialize] loaded overlaps 0.000222 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.016920 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.026178 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.038021 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.046372 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.056753 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.065501 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.085661 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.095663 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.103798 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.110906 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.120818 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.129490 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.139064 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.143517 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.149780 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.155483 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.165960 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.172529 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.186766 s [racon::Polisher::initialize] aligning overlaps [====================] 0.196623 s -[racon::Polisher::initialize] transformed data into windows 0.001903 s -[racon::Polisher::polish] generating consensus [=> ] 0.023711 s [racon::Polisher::polish] generating consensus [==> ] 0.045688 s [racon::Polisher::polish] generating consensus [===> ] 0.067739 s [racon::Polisher::polish] generating consensus [====> ] 0.081797 s [racon::Polisher::polish] generating consensus [=====> ] 0.093591 s [racon::Polisher::polish] generating consensus [======> ] 0.104098 s [racon::Polisher::polish] generating consensus [=======> ] 0.113908 s [racon::Polisher::polish] generating consensus [========> ] 0.125111 s [racon::Polisher::polish] generating consensus [=========> ] 0.143353 s [racon::Polisher::polish] generating consensus [==========> ] 0.156269 s [racon::Polisher::polish] generating consensus [===========> ] 0.184244 s [racon::Polisher::polish] generating consensus [============> ] 0.219266 s [racon::Polisher::polish] generating consensus [=============> ] 0.265077 s [racon::Polisher::polish] generating consensus [==============> ] 0.310961 s [racon::Polisher::polish] generating consensus [===============> ] 0.343879 s [racon::Polisher::polish] generating consensus [================> ] 0.366866 s [racon::Polisher::polish] generating consensus [=================> ] 0.397004 s [racon::Polisher::polish] generating consensus [==================> ] 0.414318 s [racon::Polisher::polish] generating consensus [===================>] 0.437845 s [racon::Polisher::polish] generating consensus [====================] 0.523581 s -[racon::Polisher::] total = 0.757268 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (758 ms) +[racon::Polisher::initialize] loaded target sequences 0.000393 s +[racon::Polisher::initialize] loaded sequences 0.026000 s +[racon::Polisher::initialize] loaded overlaps 0.000214 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.038882 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.058939 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.069133 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.083952 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.092650 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.095512 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.111120 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.121180 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.129457 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.136821 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.146979 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.155798 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.165345 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.170313 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.176895 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.187503 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.200233 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.206274 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.213048 s [racon::Polisher::initialize] aligning overlaps [====================] 0.216280 s +[racon::Polisher::initialize] transformed data into windows 0.001876 s +[racon::Polisher::polish] generating consensus [=> ] 0.023944 s [racon::Polisher::polish] generating consensus [==> ] 0.046076 s [racon::Polisher::polish] generating consensus [===> ] 0.064110 s [racon::Polisher::polish] generating consensus [====> ] 0.078763 s [racon::Polisher::polish] generating consensus [=====> ] 0.088407 s [racon::Polisher::polish] generating consensus [======> ] 0.098579 s [racon::Polisher::polish] generating consensus [=======> ] 0.108031 s [racon::Polisher::polish] generating consensus [========> ] 0.119048 s [racon::Polisher::polish] generating consensus [=========> ] 0.133915 s [racon::Polisher::polish] generating consensus [==========> ] 0.161320 s [racon::Polisher::polish] generating consensus [===========> ] 0.188572 s [racon::Polisher::polish] generating consensus [============> ] 0.214592 s [racon::Polisher::polish] generating consensus [=============> ] 0.256027 s [racon::Polisher::polish] generating consensus [==============> ] 0.300575 s [racon::Polisher::polish] generating consensus [===============> ] 0.332666 s [racon::Polisher::polish] generating consensus [================> ] 0.355083 s [racon::Polisher::polish] generating consensus [=================> ] 0.384554 s [racon::Polisher::polish] generating consensus [==================> ] 0.401775 s [racon::Polisher::polish] generating consensus [===================>] 0.424143 s [racon::Polisher::polish] generating consensus [====================] 0.522435 s +[racon::Polisher::] total = 0.776587 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (777 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.026061 s -[racon::Polisher::initialize] loaded sequences 0.026102 s -[racon::Polisher::initialize] loaded overlaps 0.007390 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.033428 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.046661 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.057114 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.063099 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.071784 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.080544 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.095144 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.103713 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.116698 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.127377 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.142033 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.164185 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.176579 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.190892 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.200397 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214104 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.218104 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.222584 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.230872 s [racon::Polisher::initialize] aligning overlaps [====================] 0.243745 s -[racon::Polisher::initialize] transformed data into windows 0.002442 s -[racon::Polisher::polish] generating consensus [=> ] 0.022274 s [racon::Polisher::polish] generating consensus [==> ] 0.042511 s [racon::Polisher::polish] generating consensus [===> ] 0.064047 s [racon::Polisher::polish] generating consensus [====> ] 0.064626 s [racon::Polisher::polish] generating consensus [=====> ] 0.077506 s [racon::Polisher::polish] generating consensus [======> ] 0.086636 s [racon::Polisher::polish] generating consensus [=======> ] 0.101568 s [racon::Polisher::polish] generating consensus [========> ] 0.105024 s [racon::Polisher::polish] generating consensus [=========> ] 0.131970 s [racon::Polisher::polish] generating consensus [==========> ] 0.143960 s [racon::Polisher::polish] generating consensus [===========> ] 0.154240 s [racon::Polisher::polish] generating consensus [============> ] 0.158437 s [racon::Polisher::polish] generating consensus [=============> ] 0.170549 s [racon::Polisher::polish] generating consensus [==============> ] 0.171583 s [racon::Polisher::polish] generating consensus [===============> ] 0.198857 s [racon::Polisher::polish] generating consensus [================> ] 0.199019 s [racon::Polisher::polish] generating consensus [=================> ] 0.249562 s [racon::Polisher::polish] generating consensus [==================> ] 0.267874 s [racon::Polisher::polish] generating consensus [===================>] 0.283554 s [racon::Polisher::polish] generating consensus [====================] 0.286525 s -[racon::Polisher::] total = 0.593028 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (593 ms) +[racon::Polisher::initialize] loaded target sequences 0.026074 s +[racon::Polisher::initialize] loaded sequences 0.026393 s +[racon::Polisher::initialize] loaded overlaps 0.007306 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.020152 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.033916 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.039868 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.048515 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.058235 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.068250 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.081465 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.090132 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.102834 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.113076 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.123989 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.141083 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.153100 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.167063 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.176175 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.191085 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.197550 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.201093 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.210035 s [racon::Polisher::initialize] aligning overlaps [====================] 0.223230 s +[racon::Polisher::initialize] transformed data into windows 0.002455 s +[racon::Polisher::polish] generating consensus [=> ] 0.023816 s [racon::Polisher::polish] generating consensus [==> ] 0.043322 s [racon::Polisher::polish] generating consensus [===> ] 0.063512 s [racon::Polisher::polish] generating consensus [====> ] 0.063729 s [racon::Polisher::polish] generating consensus [=====> ] 0.077336 s [racon::Polisher::polish] generating consensus [======> ] 0.085808 s [racon::Polisher::polish] generating consensus [=======> ] 0.098983 s [racon::Polisher::polish] generating consensus [========> ] 0.101842 s [racon::Polisher::polish] generating consensus [=========> ] 0.128485 s [racon::Polisher::polish] generating consensus [==========> ] 0.140558 s [racon::Polisher::polish] generating consensus [===========> ] 0.150707 s [racon::Polisher::polish] generating consensus [============> ] 0.154602 s [racon::Polisher::polish] generating consensus [=============> ] 0.166915 s [racon::Polisher::polish] generating consensus [==============> ] 0.167140 s [racon::Polisher::polish] generating consensus [===============> ] 0.194735 s [racon::Polisher::polish] generating consensus [================> ] 0.194877 s [racon::Polisher::polish] generating consensus [=================> ] 0.245715 s [racon::Polisher::polish] generating consensus [==================> ] 0.263879 s [racon::Polisher::polish] generating consensus [===================>] 0.281738 s [racon::Polisher::polish] generating consensus [====================] 0.287152 s +[racon::Polisher::] total = 0.573230 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (574 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.025948 s -[racon::Polisher::initialize] loaded sequences 0.025965 s -[racon::Polisher::initialize] loaded overlaps 0.007051 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.244428 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.403060 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.549831 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.763575 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.949061 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.078933 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.255010 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.481350 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.689742 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.899746 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.060450 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.289380 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.521893 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.712498 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.979740 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.221700 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.433235 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.661401 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.914833 s [racon::Polisher::initialize] aligning overlaps [====================] 4.118250 s -[racon::Polisher::initialize] transformed data into windows 0.039323 s -[racon::Polisher::polish] generating consensus [=> ] 1.004951 s [racon::Polisher::polish] generating consensus [==> ] 1.676273 s [racon::Polisher::polish] generating consensus [===> ] 2.396907 s [racon::Polisher::polish] generating consensus [====> ] 3.000795 s [racon::Polisher::polish] generating consensus [=====> ] 3.650167 s [racon::Polisher::polish] generating consensus [======> ] 4.412755 s [racon::Polisher::polish] generating consensus [=======> ] 5.192335 s [racon::Polisher::polish] generating consensus [========> ] 5.759370 s [racon::Polisher::polish] generating consensus [=========> ] 6.480535 s [racon::Polisher::polish] generating consensus [==========> ] 7.411159 s [racon::Polisher::polish] generating consensus [===========> ] 8.116921 s [racon::Polisher::polish] generating consensus [============> ] 8.868947 s [racon::Polisher::polish] generating consensus [=============> ] 9.574524 s [racon::Polisher::polish] generating consensus [==============> ] 10.344910 s [racon::Polisher::polish] generating consensus [===============> ] 11.110895 s [racon::Polisher::polish] generating consensus [================> ] 11.572149 s [racon::Polisher::polish] generating consensus [=================> ] 12.390660 s [racon::Polisher::polish] generating consensus [==================> ] 13.132138 s [racon::Polisher::polish] generating consensus [===================>] 13.917150 s [racon::Polisher::polish] generating consensus [====================] 14.629971 s -[racon::Polisher::] total = 18.849424 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18850 ms) +[racon::Polisher::initialize] loaded target sequences 0.029799 s +[racon::Polisher::initialize] loaded sequences 0.029299 s +[racon::Polisher::initialize] loaded overlaps 0.007769 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.293273 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.444818 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.585739 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.798677 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.957330 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.092687 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.266217 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.480819 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.727222 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.911668 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.071520 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.289012 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.531931 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.746111 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.967643 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.229239 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.480861 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.719335 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.954771 s [racon::Polisher::initialize] aligning overlaps [====================] 4.135843 s +[racon::Polisher::initialize] transformed data into windows 0.088128 s +[racon::Polisher::polish] generating consensus [=> ] 0.977927 s [racon::Polisher::polish] generating consensus [==> ] 1.641244 s [racon::Polisher::polish] generating consensus [===> ] 2.321480 s [racon::Polisher::polish] generating consensus [====> ] 2.901226 s [racon::Polisher::polish] generating consensus [=====> ] 3.562116 s [racon::Polisher::polish] generating consensus [======> ] 4.309475 s [racon::Polisher::polish] generating consensus [=======> ] 5.078771 s [racon::Polisher::polish] generating consensus [========> ] 5.638652 s [racon::Polisher::polish] generating consensus [=========> ] 6.360712 s [racon::Polisher::polish] generating consensus [==========> ] 7.208286 s [racon::Polisher::polish] generating consensus [===========> ] 7.911952 s [racon::Polisher::polish] generating consensus [============> ] 8.683616 s [racon::Polisher::polish] generating consensus [=============> ] 9.352946 s [racon::Polisher::polish] generating consensus [==============> ] 10.071532 s [racon::Polisher::polish] generating consensus [===============> ] 10.852504 s [racon::Polisher::polish] generating consensus [================> ] 11.279041 s [racon::Polisher::polish] generating consensus [=================> ] 12.142347 s [racon::Polisher::polish] generating consensus [==================> ] 12.951270 s [racon::Polisher::polish] generating consensus [===================>] 13.728236 s [racon::Polisher::polish] generating consensus [====================] 14.337931 s +[racon::Polisher::] total = 18.633178 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18634 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.011717 s -[racon::Polisher::initialize] loaded sequences 0.016147 s -[racon::Polisher::initialize] loaded overlaps 0.011728 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.417078 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.592262 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.727629 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.911726 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.069685 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.199504 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.375218 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.600661 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.816881 s [racon::Polisher::initialize] aligning overlaps [==========> ] 2.027407 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.199591 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.443794 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.687514 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.896505 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.142793 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.383656 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.587727 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.842917 s [racon::Polisher::initialize] aligning overlaps [===================>] 4.104520 s [racon::Polisher::initialize] aligning overlaps [====================] 4.290526 s -[racon::Polisher::initialize] transformed data into windows 0.021356 s -[racon::Polisher::polish] generating consensus [=> ] 1.264260 s [racon::Polisher::polish] generating consensus [==> ] 2.239121 s [racon::Polisher::polish] generating consensus [===> ] 3.268086 s [racon::Polisher::polish] generating consensus [====> ] 4.009551 s [racon::Polisher::polish] generating consensus [=====> ] 4.910407 s [racon::Polisher::polish] generating consensus [======> ] 6.028994 s [racon::Polisher::polish] generating consensus [=======> ] 7.156077 s [racon::Polisher::polish] generating consensus [========> ] 7.955647 s [racon::Polisher::polish] generating consensus [=========> ] 8.959215 s [racon::Polisher::polish] generating consensus [==========> ] 10.130331 s [racon::Polisher::polish] generating consensus [===========> ] 11.093555 s [racon::Polisher::polish] generating consensus [============> ] 12.163300 s [racon::Polisher::polish] generating consensus [=============> ] 13.158927 s [racon::Polisher::polish] generating consensus [==============> ] 14.158188 s [racon::Polisher::polish] generating consensus [===============> ] 15.170108 s [racon::Polisher::polish] generating consensus [================> ] 15.714077 s [racon::Polisher::polish] generating consensus [=================> ] 17.002836 s [racon::Polisher::polish] generating consensus [==================> ] 18.194434 s [racon::Polisher::polish] generating consensus [===================>] 19.276853 s [racon::Polisher::polish] generating consensus [====================] 20.052338 s -[racon::Polisher::] total = 24.408136 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24409 ms) +[racon::Polisher::initialize] loaded target sequences 0.031648 s +[racon::Polisher::initialize] loaded sequences 0.029205 s +[racon::Polisher::initialize] loaded overlaps 0.012944 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.287447 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.452245 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.609501 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.823659 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.009178 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.139224 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.315216 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.541890 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.743418 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.953603 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.114360 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.343115 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.574933 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.765200 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.031850 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.273784 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.485714 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.718027 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.979710 s [racon::Polisher::initialize] aligning overlaps [====================] 4.152994 s +[racon::Polisher::initialize] transformed data into windows 0.019642 s +[racon::Polisher::polish] generating consensus [=> ] 1.259410 s [racon::Polisher::polish] generating consensus [==> ] 2.248351 s [racon::Polisher::polish] generating consensus [===> ] 3.226184 s [racon::Polisher::polish] generating consensus [====> ] 3.965881 s [racon::Polisher::polish] generating consensus [=====> ] 4.856172 s [racon::Polisher::polish] generating consensus [======> ] 5.846099 s [racon::Polisher::polish] generating consensus [=======> ] 6.905166 s [racon::Polisher::polish] generating consensus [========> ] 7.670707 s [racon::Polisher::polish] generating consensus [=========> ] 8.671446 s [racon::Polisher::polish] generating consensus [==========> ] 9.825863 s [racon::Polisher::polish] generating consensus [===========> ] 10.774525 s [racon::Polisher::polish] generating consensus [============> ] 11.830994 s [racon::Polisher::polish] generating consensus [=============> ] 12.815011 s [racon::Polisher::polish] generating consensus [==============> ] 13.803037 s [racon::Polisher::polish] generating consensus [===============> ] 14.805026 s [racon::Polisher::polish] generating consensus [================> ] 15.343690 s [racon::Polisher::polish] generating consensus [=================> ] 16.619768 s [racon::Polisher::polish] generating consensus [==================> ] 17.796911 s [racon::Polisher::polish] generating consensus [===================>] 18.864985 s [racon::Polisher::polish] generating consensus [====================] 19.679285 s +[racon::Polisher::] total = 23.928378 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (23930 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.069796 s -[racon::Polisher::initialize] loaded sequences 0.040399 s -[racon::Polisher::initialize] loaded overlaps 0.007912 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.298856 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.457418 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.614522 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.828332 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.029128 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.175443 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.355770 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.582408 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.790464 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.999813 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.160279 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.388606 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.619721 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.809613 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.075460 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.316941 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.528403 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.756022 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.993821 s [racon::Polisher::initialize] aligning overlaps [====================] 4.172622 s -[racon::Polisher::initialize] transformed data into windows 0.086500 s -[racon::Polisher::polish] generating consensus [=> ] 0.963151 s [racon::Polisher::polish] generating consensus [==> ] 2.815014 s [racon::Polisher::polish] generating consensus [===> ] 6.856357 s [racon::Polisher::polish] generating consensus [====> ] 10.521725 s [racon::Polisher::polish] generating consensus [=====> ] 11.299010 s [racon::Polisher::polish] generating consensus [======> ] 12.068520 s [racon::Polisher::polish] generating consensus [=======> ] 12.846228 s [racon::Polisher::polish] generating consensus [========> ] 13.410226 s [racon::Polisher::polish] generating consensus [=========> ] 14.140275 s [racon::Polisher::polish] generating consensus [==========> ] 14.998222 s [racon::Polisher::polish] generating consensus [===========> ] 15.707145 s [racon::Polisher::polish] generating consensus [============> ] 16.486115 s [racon::Polisher::polish] generating consensus [=============> ] 17.159970 s [racon::Polisher::polish] generating consensus [==============> ] 17.912594 s [racon::Polisher::polish] generating consensus [===============> ] 18.712191 s [racon::Polisher::polish] generating consensus [================> ] 19.165744 s [racon::Polisher::polish] generating consensus [=================> ] 20.008267 s [racon::Polisher::polish] generating consensus [==================> ] 20.813324 s [racon::Polisher::polish] generating consensus [===================>] 21.583568 s [racon::Polisher::polish] generating consensus [====================] 22.102388 s -[racon::Polisher::] total = 26.482650 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (26484 ms) -[----------] 10 tests from RaconPolishingTest (76287 ms total) +[racon::Polisher::initialize] loaded target sequences 0.025965 s +[racon::Polisher::initialize] loaded sequences 0.025961 s +[racon::Polisher::initialize] loaded overlaps 0.006508 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.246211 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.403848 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.548071 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.760766 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.945712 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.075041 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.250547 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.476282 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.715102 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.941952 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.102327 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.329927 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.560700 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.757013 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.017092 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.259273 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.472389 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.706882 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.967746 s [racon::Polisher::initialize] aligning overlaps [====================] 4.153075 s +[racon::Polisher::initialize] transformed data into windows 0.075373 s +[racon::Polisher::polish] generating consensus [=> ] 0.976989 s [racon::Polisher::polish] generating consensus [==> ] 1.633128 s [racon::Polisher::polish] generating consensus [===> ] 2.360496 s [racon::Polisher::polish] generating consensus [====> ] 2.986057 s [racon::Polisher::polish] generating consensus [=====> ] 3.740277 s [racon::Polisher::polish] generating consensus [======> ] 4.563830 s [racon::Polisher::polish] generating consensus [=======> ] 5.608480 s [racon::Polisher::polish] generating consensus [========> ] 6.181014 s [racon::Polisher::polish] generating consensus [=========> ] 6.896019 s [racon::Polisher::polish] generating consensus [==========> ] 7.735444 s [racon::Polisher::polish] generating consensus [===========> ] 8.433157 s [racon::Polisher::polish] generating consensus [============> ] 9.197048 s [racon::Polisher::polish] generating consensus [=============> ] 9.861315 s [racon::Polisher::polish] generating consensus [==============> ] 10.574276 s [racon::Polisher::polish] generating consensus [===============> ] 11.417370 s [racon::Polisher::polish] generating consensus [================> ] 11.840830 s [racon::Polisher::polish] generating consensus [=================> ] 12.697662 s [racon::Polisher::polish] generating consensus [==================> ] 13.557572 s [racon::Polisher::polish] generating consensus [===================>] 14.496893 s [racon::Polisher::polish] generating consensus [====================] 15.362758 s +[racon::Polisher::] total = 19.653323 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (19655 ms) +[----------] 10 tests from RaconPolishingTest (68347 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (76297 ms total) +[==========] 15 tests from 2 test suites ran. (68361 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp @@ -755,8 +791,8 @@ dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake -dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. +dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -764,12 +800,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1970021/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3967571 and its subdirectories -I: Current time: Thu Sep 4 00:53:52 -12 2025 -I: pbuilder-time-stamp: 1756990432 +I: removing directory /srv/workspace/pbuilder/1970021 and its subdirectories +I: Current time: Thu Oct 8 09:18:50 +14 2026 +I: pbuilder-time-stamp: 1791400730