Diff of the two buildlogs: -- --- b1/build.log 2025-10-13 06:02:08.242832520 +0000 +++ b2/build.log 2025-10-13 06:04:10.326986949 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Oct 12 17:57:47 -12 2025 -I: pbuilder-time-stamp: 1760335067 +I: Current time: Mon Nov 16 02:25:10 +14 2026 +I: pbuilder-time-stamp: 1794745510 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying gcc-15.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3074383/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 15 12:25 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='344b5736d2004ad188bf729f204c1c59' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3074383' - PS1='# ' - PS2='> ' + INVOCATION_ID=81522a7a3959427bac83eaea677baae7 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3779646 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/pbuilderrc_GRYi --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/b1 --logfile b1/build.log racon_1.5.0-4.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/pbuilderrc_8siP --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.wxEiRMfB/b2 --logfile b2/build.log racon_1.5.0-4.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3074383/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -199,7 +231,7 @@ Get: 72 http://deb.debian.org/debian forky/main arm64 libspoa-dev arm64 4.1.5-1 [9656 B] Get: 73 http://deb.debian.org/debian forky/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 74 http://deb.debian.org/debian forky/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] -Fetched 31.3 MB in 0s (122 MB/s) +Fetched 31.3 MB in 0s (132 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20000 files and directories currently installed.) @@ -510,7 +542,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-4_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-4 dpkg-buildpackage: info: source distribution unstable @@ -536,7 +572,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (1.3s) +-- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -563,16 +599,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 20%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp -[ 40%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp -[ 50%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -592,10 +628,10 @@ make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp +[ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++17 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp +/usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz @@ -617,112 +653,112 @@ [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError -[ OK ] RaconInitializeTest.PolisherTypeError (6 ms) +[ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError -[ OK ] RaconInitializeTest.WindowLengthError (3 ms) +[ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (4 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (2 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError -[ OK ] RaconInitializeTest.TargetPathExtensionError (2 ms) -[----------] 5 tests from RaconInitializeTest (20 ms total) +[ OK ] RaconInitializeTest.TargetPathExtensionError (5 ms) +[----------] 5 tests from RaconInitializeTest (15 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000650 s -[racon::Polisher::initialize] loaded sequences 0.072904 s -[racon::Polisher::initialize] loaded overlaps 0.005846 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.051987 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.075975 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.113507 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.136380 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.165604 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.189931 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.251132 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.285527 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.311726 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.333056 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.354867 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.378492 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.411625 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.426757 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.467919 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.502188 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.523659 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.548266 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.574132 s [racon::Polisher::initialize] aligning overlaps [====================] 0.599884 s -[racon::Polisher::initialize] transformed data into windows 0.001355 s -[racon::Polisher::polish] generating consensus [=> ] 0.079272 s [racon::Polisher::polish] generating consensus [==> ] 0.148930 s [racon::Polisher::polish] generating consensus [===> ] 0.229639 s [racon::Polisher::polish] generating consensus [====> ] 0.281459 s [racon::Polisher::polish] generating consensus [=====> ] 0.331827 s [racon::Polisher::polish] generating consensus [======> ] 0.367356 s [racon::Polisher::polish] generating consensus [=======> ] 0.401726 s [racon::Polisher::polish] generating consensus [========> ] 0.437941 s [racon::Polisher::polish] generating consensus [=========> ] 0.503308 s [racon::Polisher::polish] generating consensus [==========> ] 0.557185 s [racon::Polisher::polish] generating consensus [===========> ] 0.661642 s [racon::Polisher::polish] generating consensus [============> ] 0.799076 s [racon::Polisher::polish] generating consensus [=============> ] 0.979904 s [racon::Polisher::polish] generating consensus [==============> ] 1.156282 s [racon::Polisher::polish] generating consensus [===============> ] 1.286487 s [racon::Polisher::polish] generating consensus [================> ] 1.366974 s [racon::Polisher::polish] generating consensus [=================> ] 1.484250 s [racon::Polisher::polish] generating consensus [==================> ] 1.489782 s [racon::Polisher::polish] generating consensus [===================>] 1.582001 s [racon::Polisher::polish] generating consensus [====================] 1.586104 s -[racon::Polisher::] total = 2.278549 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (2294 ms) +[racon::Polisher::initialize] loaded target sequences 0.001153 s +[racon::Polisher::initialize] loaded sequences 0.063657 s +[racon::Polisher::initialize] loaded overlaps 0.000373 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.045368 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.074827 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.091313 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.101505 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.112958 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.122777 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.143229 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.152526 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.160077 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.166697 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.175872 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.183771 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.192428 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.196729 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.202794 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.215004 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.220953 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.227926 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.237809 s [racon::Polisher::initialize] aligning overlaps [====================] 0.245473 s +[racon::Polisher::initialize] transformed data into windows 0.003890 s +[racon::Polisher::polish] generating consensus [=> ] 0.025262 s [racon::Polisher::polish] generating consensus [==> ] 0.048419 s [racon::Polisher::polish] generating consensus [===> ] 0.067574 s [racon::Polisher::polish] generating consensus [====> ] 0.082815 s [racon::Polisher::polish] generating consensus [=====> ] 0.093058 s [racon::Polisher::polish] generating consensus [======> ] 0.103738 s [racon::Polisher::polish] generating consensus [=======> ] 0.113608 s [racon::Polisher::polish] generating consensus [========> ] 0.135554 s [racon::Polisher::polish] generating consensus [=========> ] 0.151212 s [racon::Polisher::polish] generating consensus [==========> ] 0.167986 s [racon::Polisher::polish] generating consensus [===========> ] 0.196602 s [racon::Polisher::polish] generating consensus [============> ] 0.232727 s [racon::Polisher::polish] generating consensus [=============> ] 0.281189 s [racon::Polisher::polish] generating consensus [==============> ] 0.328731 s [racon::Polisher::polish] generating consensus [===============> ] 0.342631 s [racon::Polisher::polish] generating consensus [================> ] 0.372651 s [racon::Polisher::polish] generating consensus [=================> ] 0.402081 s [racon::Polisher::polish] generating consensus [==================> ] 0.424464 s [racon::Polisher::polish] generating consensus [===================>] 0.445644 s [racon::Polisher::polish] generating consensus [====================] 0.547193 s +[racon::Polisher::] total = 0.890193 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (904 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000460 s -[racon::Polisher::initialize] loaded sequences 0.030134 s -[racon::Polisher::initialize] loaded overlaps 0.000305 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.052697 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.071829 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.094494 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.128185 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.140445 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.149275 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.191244 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.220088 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.236984 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.250099 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.275171 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.302099 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.322273 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.337990 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.365325 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.412389 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.428402 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.429582 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.450554 s [racon::Polisher::initialize] aligning overlaps [====================] 0.458094 s -[racon::Polisher::initialize] transformed data into windows 0.000378 s -[racon::Polisher::polish] generating consensus [=> ] 0.079158 s [racon::Polisher::polish] generating consensus [==> ] 0.189493 s [racon::Polisher::polish] generating consensus [===> ] 0.265461 s [racon::Polisher::polish] generating consensus [====> ] 0.327401 s [racon::Polisher::polish] generating consensus [=====> ] 0.366258 s [racon::Polisher::polish] generating consensus [======> ] 0.400327 s [racon::Polisher::polish] generating consensus [=======> ] 0.440489 s [racon::Polisher::polish] generating consensus [========> ] 0.477705 s [racon::Polisher::polish] generating consensus [=========> ] 0.510242 s [racon::Polisher::polish] generating consensus [==========> ] 0.621009 s [racon::Polisher::polish] generating consensus [===========> ] 0.773467 s [racon::Polisher::polish] generating consensus [============> ] 0.884226 s [racon::Polisher::polish] generating consensus [=============> ] 1.069501 s [racon::Polisher::polish] generating consensus [==============> ] 1.184608 s [racon::Polisher::polish] generating consensus [===============> ] 1.281713 s [racon::Polisher::polish] generating consensus [================> ] 1.373315 s [racon::Polisher::polish] generating consensus [=================> ] 1.460222 s [racon::Polisher::polish] generating consensus [==================> ] 1.513132 s [racon::Polisher::polish] generating consensus [===================>] 1.593046 s [racon::Polisher::polish] generating consensus [====================] 1.881167 s -[racon::Polisher::] total = 2.387441 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (2397 ms) +[racon::Polisher::initialize] loaded target sequences 0.001186 s +[racon::Polisher::initialize] loaded sequences 0.033745 s +[racon::Polisher::initialize] loaded overlaps 0.000419 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.037380 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057298 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.072133 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.087134 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.095922 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.101459 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.113591 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.134988 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139120 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.146996 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.153593 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.167508 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.171594 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.180987 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.191585 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.196768 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.203053 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.211567 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.211582 s [racon::Polisher::initialize] aligning overlaps [====================] 0.216547 s +[racon::Polisher::initialize] transformed data into windows 0.000609 s +[racon::Polisher::polish] generating consensus [=> ] 0.030926 s [racon::Polisher::polish] generating consensus [==> ] 0.065576 s [racon::Polisher::polish] generating consensus [===> ] 0.093598 s [racon::Polisher::polish] generating consensus [====> ] 0.113842 s [racon::Polisher::polish] generating consensus [=====> ] 0.127665 s [racon::Polisher::polish] generating consensus [======> ] 0.141182 s [racon::Polisher::polish] generating consensus [=======> ] 0.155128 s [racon::Polisher::polish] generating consensus [========> ] 0.171174 s [racon::Polisher::polish] generating consensus [=========> ] 0.189709 s [racon::Polisher::polish] generating consensus [==========> ] 0.220446 s [racon::Polisher::polish] generating consensus [===========> ] 0.255125 s [racon::Polisher::polish] generating consensus [============> ] 0.298342 s [racon::Polisher::polish] generating consensus [=============> ] 0.349593 s [racon::Polisher::polish] generating consensus [==============> ] 0.403183 s [racon::Polisher::polish] generating consensus [===============> ] 0.449596 s [racon::Polisher::polish] generating consensus [================> ] 0.493252 s [racon::Polisher::polish] generating consensus [=================> ] 0.537407 s [racon::Polisher::polish] generating consensus [==================> ] 0.560014 s [racon::Polisher::polish] generating consensus [===================>] 0.593774 s [racon::Polisher::polish] generating consensus [====================] 0.760948 s +[racon::Polisher::] total = 1.037365 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1052 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000589 s -[racon::Polisher::initialize] loaded sequences 0.069178 s -[racon::Polisher::initialize] loaded overlaps 0.040046 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.019821 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.020078 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.020327 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.020534 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.020731 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.020925 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.021428 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.021635 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.021830 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.022025 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.022221 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.022412 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.022607 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.022801 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.022997 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.023195 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.023390 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.023602 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.023801 s [racon::Polisher::initialize] aligning overlaps [====================] 0.023999 s -[racon::Polisher::initialize] transformed data into windows 0.001491 s -[racon::Polisher::polish] generating consensus [=> ] 0.098077 s [racon::Polisher::polish] generating consensus [==> ] 0.174594 s [racon::Polisher::polish] generating consensus [===> ] 0.235639 s [racon::Polisher::polish] generating consensus [====> ] 0.293881 s [racon::Polisher::polish] generating consensus [=====> ] 0.331092 s [racon::Polisher::polish] generating consensus [======> ] 0.365698 s [racon::Polisher::polish] generating consensus [=======> ] 0.406409 s [racon::Polisher::polish] generating consensus [========> ] 0.454837 s [racon::Polisher::polish] generating consensus [=========> ] 0.502113 s [racon::Polisher::polish] generating consensus [==========> ] 0.575350 s [racon::Polisher::polish] generating consensus [===========> ] 0.676905 s [racon::Polisher::polish] generating consensus [============> ] 0.757699 s [racon::Polisher::polish] generating consensus [=============> ] 0.860435 s [racon::Polisher::polish] generating consensus [==============> ] 0.964537 s [racon::Polisher::polish] generating consensus [===============> ] 1.035637 s [racon::Polisher::polish] generating consensus [================> ] 1.086078 s [racon::Polisher::polish] generating consensus [=================> ] 1.124227 s [racon::Polisher::polish] generating consensus [==================> ] 1.155679 s [racon::Polisher::polish] generating consensus [===================>] 1.219521 s [racon::Polisher::polish] generating consensus [====================] 1.303243 s -[racon::Polisher::] total = 1.461876 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (1478 ms) +[racon::Polisher::initialize] loaded target sequences 0.001200 s +[racon::Polisher::initialize] loaded sequences 0.059574 s +[racon::Polisher::initialize] loaded overlaps 0.022445 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.005191 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005288 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005567 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005712 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005942 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006147 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006512 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.006707 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006932 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007121 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007232 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.007523 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007529 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.007588 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007703 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007753 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.007759 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.007763 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.007768 s [racon::Polisher::initialize] aligning overlaps [====================] 0.007907 s +[racon::Polisher::initialize] transformed data into windows 0.001592 s +[racon::Polisher::polish] generating consensus [=> ] 0.059650 s [racon::Polisher::polish] generating consensus [==> ] 0.098602 s [racon::Polisher::polish] generating consensus [===> ] 0.129226 s [racon::Polisher::polish] generating consensus [====> ] 0.146722 s [racon::Polisher::polish] generating consensus [=====> ] 0.153979 s [racon::Polisher::polish] generating consensus [======> ] 0.163629 s [racon::Polisher::polish] generating consensus [=======> ] 0.175528 s [racon::Polisher::polish] generating consensus [========> ] 0.186817 s [racon::Polisher::polish] generating consensus [=========> ] 0.195894 s [racon::Polisher::polish] generating consensus [==========> ] 0.220975 s [racon::Polisher::polish] generating consensus [===========> ] 0.261017 s [racon::Polisher::polish] generating consensus [============> ] 0.296522 s [racon::Polisher::polish] generating consensus [=============> ] 0.343158 s [racon::Polisher::polish] generating consensus [==============> ] 0.390492 s [racon::Polisher::polish] generating consensus [===============> ] 0.423213 s [racon::Polisher::polish] generating consensus [================> ] 0.447380 s [racon::Polisher::polish] generating consensus [=================> ] 0.480890 s [racon::Polisher::polish] generating consensus [==================> ] 0.499874 s [racon::Polisher::polish] generating consensus [===================>] 0.516648 s [racon::Polisher::polish] generating consensus [====================] 0.582343 s +[racon::Polisher::] total = 0.702080 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (713 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000370 s -[racon::Polisher::initialize] loaded sequences 0.025599 s -[racon::Polisher::initialize] loaded overlaps 0.041000 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.008027 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.008274 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.008509 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.008746 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.008978 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.009212 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.009447 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.009696 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.009912 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.010101 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.010281 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.010465 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.010652 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.010832 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.011018 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.011208 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.011392 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.011578 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.011788 s [racon::Polisher::initialize] aligning overlaps [====================] 0.011980 s -[racon::Polisher::initialize] transformed data into windows 0.000379 s -[racon::Polisher::polish] generating consensus [=> ] 0.107453 s [racon::Polisher::polish] generating consensus [==> ] 0.203794 s [racon::Polisher::polish] generating consensus [===> ] 0.265438 s [racon::Polisher::polish] generating consensus [====> ] 0.329242 s [racon::Polisher::polish] generating consensus [=====> ] 0.374179 s [racon::Polisher::polish] generating consensus [======> ] 0.418473 s [racon::Polisher::polish] generating consensus [=======> ] 0.465217 s [racon::Polisher::polish] generating consensus [========> ] 0.518142 s [racon::Polisher::polish] generating consensus [=========> ] 0.573731 s [racon::Polisher::polish] generating consensus [==========> ] 0.670546 s [racon::Polisher::polish] generating consensus [===========> ] 0.788390 s [racon::Polisher::polish] generating consensus [============> ] 0.933699 s [racon::Polisher::polish] generating consensus [=============> ] 1.205850 s [racon::Polisher::polish] generating consensus [==============> ] 1.372661 s [racon::Polisher::polish] generating consensus [===============> ] 1.513659 s [racon::Polisher::polish] generating consensus [================> ] 1.617716 s [racon::Polisher::polish] generating consensus [=================> ] 1.711188 s [racon::Polisher::polish] generating consensus [==================> ] 1.772431 s [racon::Polisher::polish] generating consensus [===================>] 1.829000 s [racon::Polisher::polish] generating consensus [====================] 2.050864 s -[racon::Polisher::] total = 2.136792 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (2140 ms) +[racon::Polisher::initialize] loaded target sequences 0.001186 s +[racon::Polisher::initialize] loaded sequences 0.038512 s +[racon::Polisher::initialize] loaded overlaps 0.030169 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.004791 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.004933 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005093 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005307 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.005413 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.005632 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006045 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.006271 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006542 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006773 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007154 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.007375 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.007476 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.007499 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.007725 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.007890 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008071 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008121 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.008199 s [racon::Polisher::initialize] aligning overlaps [====================] 0.008421 s +[racon::Polisher::initialize] transformed data into windows 0.000410 s +[racon::Polisher::polish] generating consensus [=> ] 0.068635 s [racon::Polisher::polish] generating consensus [==> ] 0.110972 s [racon::Polisher::polish] generating consensus [===> ] 0.135853 s [racon::Polisher::polish] generating consensus [====> ] 0.153903 s [racon::Polisher::polish] generating consensus [=====> ] 0.163712 s [racon::Polisher::polish] generating consensus [======> ] 0.174757 s [racon::Polisher::polish] generating consensus [=======> ] 0.188747 s [racon::Polisher::polish] generating consensus [========> ] 0.205225 s [racon::Polisher::polish] generating consensus [=========> ] 0.222382 s [racon::Polisher::polish] generating consensus [==========> ] 0.254121 s [racon::Polisher::polish] generating consensus [===========> ] 0.285939 s [racon::Polisher::polish] generating consensus [============> ] 0.325432 s [racon::Polisher::polish] generating consensus [=============> ] 0.387123 s [racon::Polisher::polish] generating consensus [==============> ] 0.433752 s [racon::Polisher::polish] generating consensus [===============> ] 0.482054 s [racon::Polisher::polish] generating consensus [================> ] 0.524551 s [racon::Polisher::polish] generating consensus [=================> ] 0.567914 s [racon::Polisher::polish] generating consensus [==================> ] 0.589823 s [racon::Polisher::polish] generating consensus [===================>] 0.614902 s [racon::Polisher::polish] generating consensus [====================] 0.746393 s +[racon::Polisher::] total = 0.842559 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (844 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.009031 s -[racon::Polisher::initialize] loaded sequences 0.047148 s -[racon::Polisher::initialize] loaded overlaps 0.000348 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.054127 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.083993 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.111648 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.146136 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.170569 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.177424 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.196260 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.230043 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.238874 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.260384 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.282366 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.311040 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.371526 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.371777 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.418643 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.439842 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.454225 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.477401 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.477479 s [racon::Polisher::initialize] aligning overlaps [====================] 0.482820 s -[racon::Polisher::initialize] transformed data into windows 0.001307 s -[racon::Polisher::polish] generating consensus [=> ] 0.312531 s [racon::Polisher::polish] generating consensus [==> ] 0.312777 s [racon::Polisher::polish] generating consensus [===> ] 0.615343 s [racon::Polisher::polish] generating consensus [====> ] 0.615607 s [racon::Polisher::polish] generating consensus [=====> ] 0.803713 s [racon::Polisher::polish] generating consensus [======> ] 0.807524 s [racon::Polisher::polish] generating consensus [=======> ] 0.924477 s [racon::Polisher::polish] generating consensus [========> ] 0.924747 s [racon::Polisher::polish] generating consensus [=========> ] 1.098952 s [racon::Polisher::polish] generating consensus [==========> ] 1.099417 s [racon::Polisher::polish] generating consensus [===========> ] 1.439998 s [racon::Polisher::polish] generating consensus [============> ] 1.440016 s [racon::Polisher::polish] generating consensus [=============> ] 2.021288 s [racon::Polisher::polish] generating consensus [==============> ] 2.036186 s [racon::Polisher::polish] generating consensus [===============> ] 2.375252 s [racon::Polisher::polish] generating consensus [================> ] 2.423363 s [racon::Polisher::polish] generating consensus [=================> ] 2.685843 s [racon::Polisher::polish] generating consensus [==================> ] 2.715348 s [racon::Polisher::polish] generating consensus [===================>] 2.930701 s [racon::Polisher::polish] generating consensus [====================] 3.608900 s -[racon::Polisher::] total = 4.158741 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (4191 ms) +[racon::Polisher::initialize] loaded target sequences 0.001198 s +[racon::Polisher::initialize] loaded sequences 0.055123 s +[racon::Polisher::initialize] loaded overlaps 0.000291 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.040978 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068122 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.085690 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.096615 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.108923 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.118692 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.139664 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.149348 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.156881 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.163499 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.172691 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.180592 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.189251 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.193557 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199218 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207600 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.212119 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.219910 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.229459 s [racon::Polisher::initialize] aligning overlaps [====================] 0.239238 s +[racon::Polisher::initialize] transformed data into windows 0.003694 s +[racon::Polisher::polish] generating consensus [=> ] 0.094141 s [racon::Polisher::polish] generating consensus [==> ] 0.094346 s [racon::Polisher::polish] generating consensus [===> ] 0.176524 s [racon::Polisher::polish] generating consensus [====> ] 0.176569 s [racon::Polisher::polish] generating consensus [=====> ] 0.217749 s [racon::Polisher::polish] generating consensus [======> ] 0.217776 s [racon::Polisher::polish] generating consensus [=======> ] 0.252043 s [racon::Polisher::polish] generating consensus [========> ] 0.252087 s [racon::Polisher::polish] generating consensus [=========> ] 0.310716 s [racon::Polisher::polish] generating consensus [==========> ] 0.311876 s [racon::Polisher::polish] generating consensus [===========> ] 0.417978 s [racon::Polisher::polish] generating consensus [============> ] 0.434471 s [racon::Polisher::polish] generating consensus [=============> ] 0.602798 s [racon::Polisher::polish] generating consensus [==============> ] 0.609294 s [racon::Polisher::polish] generating consensus [===============> ] 0.719761 s [racon::Polisher::polish] generating consensus [================> ] 0.719809 s [racon::Polisher::polish] generating consensus [=================> ] 0.823598 s [racon::Polisher::polish] generating consensus [==================> ] 0.823625 s [racon::Polisher::polish] generating consensus [===================>] 0.910052 s [racon::Polisher::polish] generating consensus [====================] 1.096269 s +[racon::Polisher::] total = 1.421362 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1454 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000552 s -[racon::Polisher::initialize] loaded sequences 0.073877 s -[racon::Polisher::initialize] loaded overlaps 0.000347 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.046444 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.071648 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.104230 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.129660 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.150227 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.167332 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.220338 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.242715 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.267725 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.282907 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.310483 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.326930 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.374437 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.385520 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.414980 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.441287 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.475540 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.498540 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.498554 s [racon::Polisher::initialize] aligning overlaps [====================] 0.507448 s -[racon::Polisher::initialize] transformed data into windows 0.001444 s -[racon::Polisher::polish] generating consensus [=> ] 0.077641 s [racon::Polisher::polish] generating consensus [==> ] 0.178881 s [racon::Polisher::polish] generating consensus [===> ] 0.256853 s [racon::Polisher::polish] generating consensus [====> ] 0.322498 s [racon::Polisher::polish] generating consensus [=====> ] 0.356446 s [racon::Polisher::polish] generating consensus [======> ] 0.390495 s [racon::Polisher::polish] generating consensus [=======> ] 0.438946 s [racon::Polisher::polish] generating consensus [========> ] 0.493509 s [racon::Polisher::polish] generating consensus [=========> ] 0.566497 s [racon::Polisher::polish] generating consensus [==========> ] 0.667709 s [racon::Polisher::polish] generating consensus [===========> ] 0.787001 s [racon::Polisher::polish] generating consensus [============> ] 0.878521 s [racon::Polisher::polish] generating consensus [=============> ] 1.028889 s [racon::Polisher::polish] generating consensus [==============> ] 1.210495 s [racon::Polisher::polish] generating consensus [===============> ] 1.319084 s [racon::Polisher::polish] generating consensus [================> ] 1.400979 s [racon::Polisher::polish] generating consensus [=================> ] 1.520687 s [racon::Polisher::polish] generating consensus [==================> ] 1.589241 s [racon::Polisher::polish] generating consensus [===================>] 1.657197 s [racon::Polisher::polish] generating consensus [====================] 2.005548 s -[racon::Polisher::] total = 2.610548 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (2615 ms) +[racon::Polisher::initialize] loaded target sequences 0.001164 s +[racon::Polisher::initialize] loaded sequences 0.063064 s +[racon::Polisher::initialize] loaded overlaps 0.000323 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.040634 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.059798 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.074199 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088595 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.098467 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102586 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.123550 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.133237 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.140801 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147423 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.156616 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.164534 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.175153 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.178047 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.190860 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.203931 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.208436 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.216045 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.227567 s [racon::Polisher::initialize] aligning overlaps [====================] 0.236569 s +[racon::Polisher::initialize] transformed data into windows 0.004116 s +[racon::Polisher::polish] generating consensus [=> ] 0.024098 s [racon::Polisher::polish] generating consensus [==> ] 0.046478 s [racon::Polisher::polish] generating consensus [===> ] 0.064398 s [racon::Polisher::polish] generating consensus [====> ] 0.079035 s [racon::Polisher::polish] generating consensus [=====> ] 0.089354 s [racon::Polisher::polish] generating consensus [======> ] 0.099680 s [racon::Polisher::polish] generating consensus [=======> ] 0.109258 s [racon::Polisher::polish] generating consensus [========> ] 0.120470 s [racon::Polisher::polish] generating consensus [=========> ] 0.135392 s [racon::Polisher::polish] generating consensus [==========> ] 0.151195 s [racon::Polisher::polish] generating consensus [===========> ] 0.178984 s [racon::Polisher::polish] generating consensus [============> ] 0.248476 s [racon::Polisher::polish] generating consensus [=============> ] 0.293573 s [racon::Polisher::polish] generating consensus [==============> ] 0.338782 s [racon::Polisher::polish] generating consensus [===============> ] 0.371122 s [racon::Polisher::polish] generating consensus [================> ] 0.393853 s [racon::Polisher::polish] generating consensus [=================> ] 0.423545 s [racon::Polisher::polish] generating consensus [==================> ] 0.440506 s [racon::Polisher::polish] generating consensus [===================>] 0.463403 s [racon::Polisher::polish] generating consensus [====================] 0.531519 s +[racon::Polisher::] total = 0.860055 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (862 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.071316 s -[racon::Polisher::initialize] loaded sequences 0.071876 s -[racon::Polisher::initialize] loaded overlaps 0.019872 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.059978 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.102235 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.114919 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.138767 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.156317 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.188512 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.198363 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.211151 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.227415 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.255853 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.291748 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.322518 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.353128 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.389194 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.410083 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.446805 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.472621 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.492217 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.508869 s [racon::Polisher::initialize] aligning overlaps [====================] 0.539740 s -[racon::Polisher::initialize] transformed data into windows 0.002688 s -[racon::Polisher::polish] generating consensus [=> ] 0.062082 s [racon::Polisher::polish] generating consensus [==> ] 0.125883 s [racon::Polisher::polish] generating consensus [===> ] 0.190542 s [racon::Polisher::polish] generating consensus [====> ] 0.197332 s [racon::Polisher::polish] generating consensus [=====> ] 0.237703 s [racon::Polisher::polish] generating consensus [======> ] 0.265430 s [racon::Polisher::polish] generating consensus [=======> ] 0.300977 s [racon::Polisher::polish] generating consensus [========> ] 0.301270 s [racon::Polisher::polish] generating consensus [=========> ] 0.377283 s [racon::Polisher::polish] generating consensus [==========> ] 0.405671 s [racon::Polisher::polish] generating consensus [===========> ] 0.427655 s [racon::Polisher::polish] generating consensus [============> ] 0.437360 s [racon::Polisher::polish] generating consensus [=============> ] 0.463086 s [racon::Polisher::polish] generating consensus [==============> ] 0.469499 s [racon::Polisher::polish] generating consensus [===============> ] 0.569870 s [racon::Polisher::polish] generating consensus [================> ] 0.570198 s [racon::Polisher::polish] generating consensus [=================> ] 0.699263 s [racon::Polisher::polish] generating consensus [==================> ] 0.748674 s [racon::Polisher::polish] generating consensus [===================>] 0.787939 s [racon::Polisher::polish] generating consensus [====================] 0.806753 s -[racon::Polisher::] total = 1.513237 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (1514 ms) +[racon::Polisher::initialize] loaded target sequences 0.062384 s +[racon::Polisher::initialize] loaded sequences 0.036347 s +[racon::Polisher::initialize] loaded overlaps 0.008691 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.071087 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.109369 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.115303 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.138398 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.156026 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.158071 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.167494 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.167888 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.177082 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.188897 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.197442 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.205695 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.216563 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.230518 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.239842 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.252439 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.259831 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.265210 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.272852 s [racon::Polisher::initialize] aligning overlaps [====================] 0.287455 s +[racon::Polisher::initialize] transformed data into windows 0.007069 s +[racon::Polisher::polish] generating consensus [=> ] 0.022088 s [racon::Polisher::polish] generating consensus [==> ] 0.043785 s [racon::Polisher::polish] generating consensus [===> ] 0.065514 s [racon::Polisher::polish] generating consensus [====> ] 0.065929 s [racon::Polisher::polish] generating consensus [=====> ] 0.079139 s [racon::Polisher::polish] generating consensus [======> ] 0.087665 s [racon::Polisher::polish] generating consensus [=======> ] 0.100745 s [racon::Polisher::polish] generating consensus [========> ] 0.101564 s [racon::Polisher::polish] generating consensus [=========> ] 0.128527 s [racon::Polisher::polish] generating consensus [==========> ] 0.140676 s [racon::Polisher::polish] generating consensus [===========> ] 0.151092 s [racon::Polisher::polish] generating consensus [============> ] 0.155091 s [racon::Polisher::polish] generating consensus [=============> ] 0.167309 s [racon::Polisher::polish] generating consensus [==============> ] 0.167649 s [racon::Polisher::polish] generating consensus [===============> ] 0.195494 s [racon::Polisher::polish] generating consensus [================> ] 0.195760 s [racon::Polisher::polish] generating consensus [=================> ] 0.246765 s [racon::Polisher::polish] generating consensus [==================> ] 0.265103 s [racon::Polisher::polish] generating consensus [===================>] 0.286107 s [racon::Polisher::polish] generating consensus [====================] 0.289335 s +[racon::Polisher::] total = 0.691794 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (693 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.047259 s -[racon::Polisher::initialize] loaded sequences 0.053560 s -[racon::Polisher::initialize] loaded overlaps 0.011641 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.724169 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.241333 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.659940 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.255934 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.712616 s [racon::Polisher::initialize] aligning overlaps [======> ] 3.152588 s [racon::Polisher::initialize] aligning overlaps [=======> ] 3.674408 s [racon::Polisher::initialize] aligning overlaps [========> ] 4.332955 s [racon::Polisher::initialize] aligning overlaps [=========> ] 4.992604 s [racon::Polisher::initialize] aligning overlaps [==========> ] 5.364123 s [racon::Polisher::initialize] aligning overlaps [===========> ] 5.712467 s [racon::Polisher::initialize] aligning overlaps [============> ] 6.129962 s [racon::Polisher::initialize] aligning overlaps [=============> ] 6.590205 s [racon::Polisher::initialize] aligning overlaps [==============> ] 7.024664 s [racon::Polisher::initialize] aligning overlaps [===============> ] 7.417992 s [racon::Polisher::initialize] aligning overlaps [================> ] 7.882851 s [racon::Polisher::initialize] aligning overlaps [=================> ] 8.364280 s [racon::Polisher::initialize] aligning overlaps [==================> ] 8.826725 s [racon::Polisher::initialize] aligning overlaps [===================>] 9.236694 s [racon::Polisher::initialize] aligning overlaps [====================] 9.609618 s -[racon::Polisher::initialize] transformed data into windows 0.081215 s -[racon::Polisher::polish] generating consensus [=> ] 2.887731 s [racon::Polisher::polish] generating consensus [==> ] 5.020528 s [racon::Polisher::polish] generating consensus [===> ] 7.487695 s [racon::Polisher::polish] generating consensus [====> ] 10.187380 s [racon::Polisher::polish] generating consensus [=====> ] 12.916643 s [racon::Polisher::polish] generating consensus [======> ] 15.759441 s [racon::Polisher::polish] generating consensus [=======> ] 18.336733 s [racon::Polisher::polish] generating consensus [========> ] 20.084019 s [racon::Polisher::polish] generating consensus [=========> ] 22.327174 s [racon::Polisher::polish] generating consensus [==========> ] 24.768470 s [racon::Polisher::polish] generating consensus [===========> ] 26.330307 s [racon::Polisher::polish] generating consensus [============> ] 28.210290 s [racon::Polisher::polish] generating consensus [=============> ] 30.166727 s [racon::Polisher::polish] generating consensus [==============> ] 32.424519 s [racon::Polisher::polish] generating consensus [===============> ] 35.024265 s [racon::Polisher::polish] generating consensus [================> ] 36.296064 s [racon::Polisher::polish] generating consensus [=================> ] 38.873129 s [racon::Polisher::polish] generating consensus [==================> ] 41.289665 s [racon::Polisher::polish] generating consensus [===================>] 42.386335 s [racon::Polisher::polish] generating consensus [====================] 42.742963 s -[racon::Polisher::] total = 52.549700 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (52557 ms) +[racon::Polisher::initialize] loaded target sequences 0.066420 s +[racon::Polisher::initialize] loaded sequences 0.039243 s +[racon::Polisher::initialize] loaded overlaps 0.009274 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.284936 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.423659 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.552490 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.747605 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.892448 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.017511 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.177861 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.376678 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.604604 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.774597 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.921993 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.121892 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.351213 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.543874 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.762228 s [racon::Polisher::initialize] aligning overlaps [================> ] 2.990340 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.223331 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.443783 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.661575 s [racon::Polisher::initialize] aligning overlaps [====================] 3.839114 s +[racon::Polisher::initialize] transformed data into windows 0.092913 s +[racon::Polisher::polish] generating consensus [=> ] 0.956620 s [racon::Polisher::polish] generating consensus [==> ] 1.654291 s [racon::Polisher::polish] generating consensus [===> ] 2.352756 s [racon::Polisher::polish] generating consensus [====> ] 2.936611 s [racon::Polisher::polish] generating consensus [=====> ] 3.626786 s [racon::Polisher::polish] generating consensus [======> ] 4.372179 s [racon::Polisher::polish] generating consensus [=======> ] 5.151206 s [racon::Polisher::polish] generating consensus [========> ] 5.722008 s [racon::Polisher::polish] generating consensus [=========> ] 6.459229 s [racon::Polisher::polish] generating consensus [==========> ] 7.321302 s [racon::Polisher::polish] generating consensus [===========> ] 8.036800 s [racon::Polisher::polish] generating consensus [============> ] 8.824192 s [racon::Polisher::polish] generating consensus [=============> ] 9.505073 s [racon::Polisher::polish] generating consensus [==============> ] 10.235939 s [racon::Polisher::polish] generating consensus [===============> ] 11.030746 s [racon::Polisher::polish] generating consensus [================> ] 11.475610 s [racon::Polisher::polish] generating consensus [=================> ] 12.345476 s [racon::Polisher::polish] generating consensus [==================> ] 13.166673 s [racon::Polisher::polish] generating consensus [===================>] 13.962367 s [racon::Polisher::polish] generating consensus [====================] 14.653261 s +[racon::Polisher::] total = 18.704780 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18706 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.020729 s -[racon::Polisher::initialize] loaded sequences 0.026358 s -[racon::Polisher::initialize] loaded overlaps 0.011882 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.586697 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.978867 s [racon::Polisher::initialize] aligning overlaps [===> ] 1.262139 s [racon::Polisher::initialize] aligning overlaps [====> ] 1.741789 s [racon::Polisher::initialize] aligning overlaps [=====> ] 2.159663 s [racon::Polisher::initialize] aligning overlaps [======> ] 2.440534 s [racon::Polisher::initialize] aligning overlaps [=======> ] 2.801503 s [racon::Polisher::initialize] aligning overlaps [========> ] 3.296766 s [racon::Polisher::initialize] aligning overlaps [=========> ] 3.678424 s [racon::Polisher::initialize] aligning overlaps [==========> ] 4.048790 s [racon::Polisher::initialize] aligning overlaps [===========> ] 4.344074 s [racon::Polisher::initialize] aligning overlaps [============> ] 4.769398 s [racon::Polisher::initialize] aligning overlaps [=============> ] 5.201976 s [racon::Polisher::initialize] aligning overlaps [==============> ] 5.550567 s [racon::Polisher::initialize] aligning overlaps [===============> ] 6.047292 s [racon::Polisher::initialize] aligning overlaps [================> ] 6.494756 s [racon::Polisher::initialize] aligning overlaps [=================> ] 6.848044 s [racon::Polisher::initialize] aligning overlaps [==================> ] 7.034630 s [racon::Polisher::initialize] aligning overlaps [===================>] 7.442682 s [racon::Polisher::initialize] aligning overlaps [====================] 7.556649 s -[racon::Polisher::initialize] transformed data into windows 0.010001 s -[racon::Polisher::polish] generating consensus [=> ] 2.121187 s [racon::Polisher::polish] generating consensus [==> ] 2.927195 s [racon::Polisher::polish] generating consensus [===> ] 3.945267 s [racon::Polisher::polish] generating consensus [====> ] 4.689575 s [racon::Polisher::polish] generating consensus [=====> ] 6.282638 s [racon::Polisher::polish] generating consensus [======> ] 8.591430 s [racon::Polisher::polish] generating consensus [=======> ] 10.260511 s [racon::Polisher::polish] generating consensus [========> ] 11.881121 s [racon::Polisher::polish] generating consensus [=========> ] 13.229769 s [racon::Polisher::polish] generating consensus [==========> ] 15.825036 s [racon::Polisher::polish] generating consensus [===========> ] 17.736763 s [racon::Polisher::polish] generating consensus [============> ] 19.931725 s [racon::Polisher::polish] generating consensus [=============> ] 22.049195 s [racon::Polisher::polish] generating consensus [==============> ] 24.251153 s [racon::Polisher::polish] generating consensus [===============> ] 26.068946 s [racon::Polisher::polish] generating consensus [================> ] 27.271966 s [racon::Polisher::polish] generating consensus [=================> ] 30.658967 s [racon::Polisher::polish] generating consensus [==================> ] 32.272109 s [racon::Polisher::polish] generating consensus [===================>] 33.979038 s [racon::Polisher::polish] generating consensus [====================] 34.994134 s -[racon::Polisher::] total = 42.622408 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (42627 ms) +[racon::Polisher::initialize] loaded target sequences 0.039331 s +[racon::Polisher::initialize] loaded sequences 0.032845 s +[racon::Polisher::initialize] loaded overlaps 0.013433 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.287647 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.433916 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.581660 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.776656 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.948256 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.068584 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.233913 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.442477 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.634514 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.829420 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.977683 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.188662 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.402986 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.578598 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.825015 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.048103 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.243972 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.454558 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.679015 s [racon::Polisher::initialize] aligning overlaps [====================] 3.870042 s +[racon::Polisher::initialize] transformed data into windows 0.020077 s +[racon::Polisher::polish] generating consensus [=> ] 1.322559 s [racon::Polisher::polish] generating consensus [==> ] 2.263872 s [racon::Polisher::polish] generating consensus [===> ] 3.245571 s [racon::Polisher::polish] generating consensus [====> ] 4.001512 s [racon::Polisher::polish] generating consensus [=====> ] 4.917072 s [racon::Polisher::polish] generating consensus [======> ] 5.940857 s [racon::Polisher::polish] generating consensus [=======> ] 7.014365 s [racon::Polisher::polish] generating consensus [========> ] 7.799923 s [racon::Polisher::polish] generating consensus [=========> ] 8.808045 s [racon::Polisher::polish] generating consensus [==========> ] 10.023191 s [racon::Polisher::polish] generating consensus [===========> ] 11.079133 s [racon::Polisher::polish] generating consensus [============> ] 12.125684 s [racon::Polisher::polish] generating consensus [=============> ] 13.118447 s [racon::Polisher::polish] generating consensus [==============> ] 14.168472 s [racon::Polisher::polish] generating consensus [===============> ] 15.160337 s [racon::Polisher::polish] generating consensus [================> ] 15.733032 s [racon::Polisher::polish] generating consensus [=================> ] 16.982160 s [racon::Polisher::polish] generating consensus [==================> ] 18.157842 s [racon::Polisher::polish] generating consensus [===================>] 19.292420 s [racon::Polisher::polish] generating consensus [====================] 20.133121 s +[racon::Polisher::] total = 24.112277 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24114 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.064427 s -[racon::Polisher::initialize] loaded sequences 0.078828 s -[racon::Polisher::initialize] loaded overlaps 0.015747 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.994702 s [racon::Polisher::initialize] aligning overlaps [==> ] 1.605902 s [racon::Polisher::initialize] aligning overlaps [===> ] 2.075275 s [racon::Polisher::initialize] aligning overlaps [====> ] 2.838890 s [racon::Polisher::initialize] aligning overlaps [=====> ] 3.547912 s [racon::Polisher::initialize] aligning overlaps [======> ] 4.021633 s [racon::Polisher::initialize] aligning overlaps [=======> ] 4.649043 s [racon::Polisher::initialize] aligning overlaps [========> ] 5.305522 s [racon::Polisher::initialize] aligning overlaps [=========> ] 6.033894 s [racon::Polisher::initialize] aligning overlaps [==========> ] 6.821222 s [racon::Polisher::initialize] aligning overlaps [===========> ] 7.409330 s [racon::Polisher::initialize] aligning overlaps [============> ] 8.190546 s [racon::Polisher::initialize] aligning overlaps [=============> ] 9.072750 s [racon::Polisher::initialize] aligning overlaps [==============> ] 9.860088 s [racon::Polisher::initialize] aligning overlaps [===============> ] 10.665490 s [racon::Polisher::initialize] aligning overlaps [================> ] 11.619956 s [racon::Polisher::initialize] aligning overlaps [=================> ] 12.426321 s [racon::Polisher::initialize] aligning overlaps [==================> ] 13.136380 s [racon::Polisher::initialize] aligning overlaps [===================>] 13.450998 s [racon::Polisher::initialize] aligning overlaps [====================] 13.649755 s -[racon::Polisher::initialize] transformed data into windows 0.120964 s -[racon::Polisher::polish] generating consensus [=> ] 3.795471 s [racon::Polisher::polish] generating consensus [==> ] 5.259944 s [racon::Polisher::polish] generating consensus [===> ] 8.735725 s [racon::Polisher::polish] generating consensus [====> ] 11.024408 s [racon::Polisher::polish] generating consensus [=====> ] 13.194972 s [racon::Polisher::polish] generating consensus [======> ] 17.046586 s [racon::Polisher::polish] generating consensus [=======> ] 19.977640 s [racon::Polisher::polish] generating consensus [========> ] 21.467843 s [racon::Polisher::polish] generating consensus [=========> ] 23.714490 s [racon::Polisher::polish] generating consensus [==========> ] 27.641093 s [racon::Polisher::polish] generating consensus [===========> ] 30.321648 s [racon::Polisher::polish] generating consensus [============> ] 31.304228 s [racon::Polisher::polish] generating consensus [=============> ] 33.307508 s [racon::Polisher::polish] generating consensus [==============> ] 34.135111 s [racon::Polisher::polish] generating consensus [===============> ] 35.379729 s [racon::Polisher::polish] generating consensus [================> ] 37.414723 s [racon::Polisher::polish] generating consensus [=================> ] 39.169512 s [racon::Polisher::polish] generating consensus [==================> ] 40.335152 s [racon::Polisher::polish] generating consensus [===================>] 43.105721 s [racon::Polisher::polish] generating consensus [====================] 44.282111 s -[racon::Polisher::] total = 58.214656 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (58235 ms) -[----------] 10 tests from RaconPolishingTest (170061 ms total) +[racon::Polisher::initialize] loaded target sequences 0.071181 s +[racon::Polisher::initialize] loaded sequences 0.040294 s +[racon::Polisher::initialize] loaded overlaps 0.007913 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.289613 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.436046 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.570288 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.764339 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.934845 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.054468 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.216938 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.427127 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.618647 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.812384 s [racon::Polisher::initialize] aligning overlaps [===========> ] 1.959829 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.170358 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.384134 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.569061 s [racon::Polisher::initialize] aligning overlaps [===============> ] 2.806924 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.027737 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.221320 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.449405 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.691703 s [racon::Polisher::initialize] aligning overlaps [====================] 3.852932 s +[racon::Polisher::initialize] transformed data into windows 0.093617 s +[racon::Polisher::polish] generating consensus [=> ] 0.943478 s [racon::Polisher::polish] generating consensus [==> ] 1.619742 s [racon::Polisher::polish] generating consensus [===> ] 2.363025 s [racon::Polisher::polish] generating consensus [====> ] 2.980053 s [racon::Polisher::polish] generating consensus [=====> ] 3.644950 s [racon::Polisher::polish] generating consensus [======> ] 4.424968 s [racon::Polisher::polish] generating consensus [=======> ] 5.215183 s [racon::Polisher::polish] generating consensus [========> ] 5.788000 s [racon::Polisher::polish] generating consensus [=========> ] 6.527125 s [racon::Polisher::polish] generating consensus [==========> ] 7.395548 s [racon::Polisher::polish] generating consensus [===========> ] 8.113611 s [racon::Polisher::polish] generating consensus [============> ] 8.905635 s [racon::Polisher::polish] generating consensus [=============> ] 9.589259 s [racon::Polisher::polish] generating consensus [==============> ] 10.328881 s [racon::Polisher::polish] generating consensus [===============> ] 11.128171 s [racon::Polisher::polish] generating consensus [================> ] 11.565484 s [racon::Polisher::polish] generating consensus [=================> ] 12.450562 s [racon::Polisher::polish] generating consensus [==================> ] 13.276333 s [racon::Polisher::polish] generating consensus [===================>] 14.073911 s [racon::Polisher::polish] generating consensus [====================] 14.632867 s +[racon::Polisher::] total = 18.702690 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18704 ms) +[----------] 10 tests from RaconPolishingTest (68051 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (170085 ms total) +[==========] 15 tests from 2 test suites ran. (68066 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp @@ -775,12 +811,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3779646/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3074383 and its subdirectories -I: Current time: Sun Oct 12 18:02:07 -12 2025 -I: pbuilder-time-stamp: 1760335327 +I: removing directory /srv/workspace/pbuilder/3779646 and its subdirectories +I: Current time: Mon Nov 16 02:27:09 +14 2026 +I: pbuilder-time-stamp: 1794745629