Diff of the two buildlogs: -- --- b1/build.log 2025-08-05 12:21:05.975006401 +0000 +++ b2/build.log 2025-08-05 12:22:18.459103724 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Sep 7 06:41:33 -12 2026 -I: pbuilder-time-stamp: 1788806493 +I: Current time: Wed Aug 6 02:21:09 +14 2025 +I: pbuilder-time-stamp: 1754396469 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2288486/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 5 12:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='b258c2bbb4db4f6d8a1d6aea0f479fc0' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2288486' - PS1='# ' - PS2='> ' + INVOCATION_ID=9bc585cd2afd40f29eca5a2933dcf92c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3022180 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TpEdvRVj/pbuilderrc_iWKk --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TpEdvRVj/b1 --logfile b1/build.log ray_2.3.1-9.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.TpEdvRVj/pbuilderrc_6ZST --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.TpEdvRVj/b2 --logfile b2/build.log ray_2.3.1-9.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2288486/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -219,7 +251,7 @@ Get: 100 http://deb.debian.org/debian trixie/main arm64 mpi-default-dev arm64 1.18 [3372 B] Get: 101 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] -Fetched 89.6 MB in 1s (123 MB/s) +Fetched 89.6 MB in 0s (234 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -646,7 +678,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ray-2.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ray_2.3.1-9_source.changes +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ray-2.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ray_2.3.1-9_source.changes dpkg-buildpackage: info: source package ray dpkg-buildpackage: info: source version 2.3.1-9 dpkg-buildpackage: info: source distribution unstable @@ -660,7 +696,7 @@ dh_auto_clean -- CXXFLAGS="-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi " HAVE_LIBZ=y HAVE_LIBBZ2=y make -j12 clean "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi " HAVE_LIBZ=y HAVE_LIBBZ2=y make[2]: Entering directory '/build/reproducible-path/ray-2.3.1' -make -j12 --jobserver-auth=fifo:/tmp/GMfifo2298708 -C RayPlatform clean +make -j12 --jobserver-auth=fifo:/tmp/GMfifo3023910 -C RayPlatform clean make[3]: Entering directory '/build/reproducible-path/ray-2.3.1/RayPlatform' make[3]: warning: -j12 forced in submake: resetting jobserver mode. echo CLEAN RayPlatform @@ -686,46 +722,46 @@ make -j12 "INSTALL=install --strip-program=true" MPICXX=aarch64-linux-gnu-g\+\+ "CXXFLAGS=-g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi " "DEBLDFLAGS=-Wl,-z,relro -Wl,-z,now -L/usr/lib/aarch64-linux-gnu/openmpi/lib -lmpi -lpthread" HAVE_LIBBZ2=y HAVE_LIBZ=y make[2]: Entering directory '/build/reproducible-path/ray-2.3.1' echo " CXX code/application_core/ray_main.o" - CXX code/application_core/ray_main.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o echo " CXX code/Amos/Amos.o" - CXX code/Amos/Amos.o echo " CXX code/CoverageGatherer/CoverageGatherer.o" +echo " CXX code/CoverageGatherer/CoverageDistribution.o" + CXX code/application_core/ray_main.o +echo " CXX code/EdgePurger/EdgePurger.o" + CXX code/Amos/Amos.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/ray_main.cpp -o code/application_core/ray_main.o CXX code/CoverageGatherer/CoverageGatherer.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Amos/Amos.cpp -o code/Amos/Amos.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o -echo " CXX code/CoverageGatherer/CoverageDistribution.o" CXX code/CoverageGatherer/CoverageDistribution.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageGatherer.cpp -o code/CoverageGatherer/CoverageGatherer.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/CoverageGatherer/CoverageDistribution.cpp -o code/CoverageGatherer/CoverageDistribution.o -echo " CXX code/EdgePurger/EdgePurger.o" CXX code/EdgePurger/EdgePurger.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o echo " CXX code/EdgePurger/EdgePurgerWorker.o" +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurger.cpp -o code/EdgePurger/EdgePurger.o +echo " CXX code/Example/Example.o" +echo " CXX code/FusionData/FusionData.o" +echo " CXX code/FusionTaskCreator/FusionWorker.o" CXX code/EdgePurger/EdgePurgerWorker.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/EdgePurger/EdgePurgerWorker.cpp -o code/EdgePurger/EdgePurgerWorker.o -echo " CXX code/Example/Example.o" +echo " CXX code/FusionTaskCreator/FusionTaskCreator.o" CXX code/Example/Example.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o -echo " CXX code/FusionData/FusionData.o" +echo " CXX code/GeneOntology/KeyEncoder.o" CXX code/FusionData/FusionData.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o -echo " CXX code/FusionTaskCreator/FusionWorker.o" +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Example/Example.cpp -o code/Example/Example.o CXX code/FusionTaskCreator/FusionWorker.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionData/FusionData.cpp -o code/FusionData/FusionData.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionWorker.cpp -o code/FusionTaskCreator/FusionWorker.o -echo " CXX code/FusionTaskCreator/FusionTaskCreator.o" CXX code/FusionTaskCreator/FusionTaskCreator.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o -echo " CXX code/GeneOntology/KeyEncoder.o" CXX code/GeneOntology/KeyEncoder.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/FusionTaskCreator/FusionTaskCreator.cpp -o code/FusionTaskCreator/FusionTaskCreator.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/KeyEncoder.cpp -o code/GeneOntology/KeyEncoder.o echo " CXX code/GeneOntology/GeneOntology.o" CXX code/GeneOntology/GeneOntology.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GeneOntology/GeneOntology.cpp -o code/GeneOntology/GeneOntology.o echo " CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o" CXX code/GenomeNeighbourhood/GenomeNeighbourhood.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o echo " CXX code/GenomeNeighbourhood/Neighbour.o" CXX code/GenomeNeighbourhood/Neighbour.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/GenomeNeighbourhood.cpp -o code/GenomeNeighbourhood/GenomeNeighbourhood.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/GenomeNeighbourhood/Neighbour.cpp -o code/GenomeNeighbourhood/Neighbour.o echo " CXX code/GenomeNeighbourhood/NeighbourPair.o" CXX code/GenomeNeighbourhood/NeighbourPair.o @@ -808,13 +844,13 @@ echo " CXX code/Searcher/ContigHit.o" CXX code/Searcher/ContigHit.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ContigHit.cpp -o code/Searcher/ContigHit.o +echo " CXX code/Searcher/ColorSet.o" + CXX code/Searcher/ColorSet.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o code/Searcher/SearchDirectory.cpp: In member function 'void SearchDirectory::readLineFromFile(char*, int)': code/Searcher/SearchDirectory.cpp:320:14: warning: ignoring return value of 'char* fgets(char*, int, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 320 | fgets(line,length,m_currentFileStream); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -echo " CXX code/Searcher/ColorSet.o" - CXX code/Searcher/ColorSet.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/ColorSet.cpp -o code/Searcher/ColorSet.o echo " CXX code/Searcher/VirtualKmerColor.o" CXX code/Searcher/VirtualKmerColor.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Searcher/VirtualKmerColor.cpp -o code/Searcher/VirtualKmerColor.o @@ -909,10 +945,10 @@ CXX code/SequencesLoader/FastaLoaderForReads.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaLoaderForReads.cpp -o code/SequencesLoader/FastaLoaderForReads.o echo " CXX code/SequencesLoader/FastqLoader.o" - CXX code/SequencesLoader/FastqLoader.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o echo " CXX code/SequencesLoader/ExportLoader.o" + CXX code/SequencesLoader/FastqLoader.o CXX code/SequencesLoader/ExportLoader.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqLoader.cpp -o code/SequencesLoader/FastqLoader.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/ExportLoader.cpp -o code/SequencesLoader/ExportLoader.o echo " CXX code/SequencesLoader/LoaderInterface.o" CXX code/SequencesLoader/LoaderInterface.o @@ -940,9 +976,9 @@ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqBz2Loader.cpp -o code/SequencesLoader/FastqBz2Loader.o echo " CXX code/SequencesLoader/FastaBz2Loader.o" CXX code/SequencesLoader/FastaBz2Loader.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o echo " CXX code/SequencesLoader/FastqGzLoader.o" CXX code/SequencesLoader/FastqGzLoader.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastaBz2Loader.cpp -o code/SequencesLoader/FastaBz2Loader.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SequencesLoader/FastqGzLoader.cpp -o code/SequencesLoader/FastqGzLoader.o echo " CXX code/SequencesLoader/FastaGzLoader.o" CXX code/SequencesLoader/FastaGzLoader.o @@ -961,9 +997,9 @@ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.cpp -o code/SpuriousSeedAnnihilator/SeedFilteringWorkflow.o echo " CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o" CXX code/SpuriousSeedAnnihilator/AttributeFetcher.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o echo " CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o" CXX code/SpuriousSeedAnnihilator/AnnotationFetcher.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AttributeFetcher.cpp -o code/SpuriousSeedAnnihilator/AttributeFetcher.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/SpuriousSeedAnnihilator/AnnotationFetcher.cpp -o code/SpuriousSeedAnnihilator/AnnotationFetcher.o echo " CXX code/SpuriousSeedAnnihilator/NanoMerger.o" CXX code/SpuriousSeedAnnihilator/NanoMerger.o @@ -1000,9 +1036,9 @@ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/ExperimentVertex.cpp -o code/Surveyor/ExperimentVertex.o echo " CXX code/Surveyor/MatrixOwner.o" CXX code/Surveyor/MatrixOwner.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o echo " CXX code/TaxonomyViewer/TaxonomyViewer.o" CXX code/TaxonomyViewer/TaxonomyViewer.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/Surveyor/MatrixOwner.cpp -o code/Surveyor/MatrixOwner.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/TaxonomyViewer/TaxonomyViewer.cpp -o code/TaxonomyViewer/TaxonomyViewer.o echo " CXX code/TaxonomyViewer/GenomeToTaxonLoader.o" CXX code/TaxonomyViewer/GenomeToTaxonLoader.o @@ -1028,41 +1064,41 @@ echo " CXX code/application_core/Machine.o" CXX code/application_core/Machine.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D CONFIG_MAXKMERLENGTH=32 -D CONFIG_HAVE_LIBZ -D CONFIG_HAVE_LIBBZ2 -D CONFIG_RAY_VERSION=\"2.3.1\" -I. -IRayPlatform -c code/application_core/Machine.cpp -o code/application_core/Machine.o -make -j12 --jobserver-auth=fifo:/tmp/GMfifo2298943 -C RayPlatform +make -j12 --jobserver-auth=fifo:/tmp/GMfifo3023942 -C RayPlatform make[3]: Entering directory '/build/reproducible-path/ray-2.3.1/RayPlatform' make[3]: warning: -j12 forced in submake: resetting jobserver mode. echo " CXX RayPlatform/memory/ReusableMemoryStore.o" -echo " CXX RayPlatform/memory/MyAllocator.o" CXX RayPlatform/memory/ReusableMemoryStore.o - CXX RayPlatform/memory/MyAllocator.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ReusableMemoryStore.o RayPlatform/memory/ReusableMemoryStore.cpp +echo " CXX RayPlatform/memory/MyAllocator.o" + CXX RayPlatform/memory/MyAllocator.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/MyAllocator.o RayPlatform/memory/MyAllocator.cpp echo " CXX RayPlatform/memory/RingAllocator.o" CXX RayPlatform/memory/RingAllocator.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp echo " CXX RayPlatform/memory/allocator.o" CXX RayPlatform/memory/allocator.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/RingAllocator.o RayPlatform/memory/RingAllocator.cpp aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/allocator.o RayPlatform/memory/allocator.cpp echo " CXX RayPlatform/memory/DefragmentationGroup.o" CXX RayPlatform/memory/DefragmentationGroup.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationGroup.o RayPlatform/memory/DefragmentationGroup.cpp echo " CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o" CXX RayPlatform/memory/ChunkAllocatorWithDefragmentation.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp echo " CXX RayPlatform/memory/DefragmentationLane.o" CXX RayPlatform/memory/DefragmentationLane.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/ChunkAllocatorWithDefragmentation.o RayPlatform/memory/ChunkAllocatorWithDefragmentation.cpp aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DefragmentationLane.o RayPlatform/memory/DefragmentationLane.cpp echo " CXX RayPlatform/memory/DirtyBuffer.o" CXX RayPlatform/memory/DirtyBuffer.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp echo " CXX RayPlatform/routing/ConnectionGraph.o" CXX RayPlatform/routing/ConnectionGraph.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/memory/DirtyBuffer.o RayPlatform/memory/DirtyBuffer.cpp aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/ConnectionGraph.o RayPlatform/routing/ConnectionGraph.cpp echo " CXX RayPlatform/routing/GraphImplementation.o" CXX RayPlatform/routing/GraphImplementation.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp echo " CXX RayPlatform/routing/GraphImplementationRandom.o" CXX RayPlatform/routing/GraphImplementationRandom.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementation.o RayPlatform/routing/GraphImplementation.cpp aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationRandom.o RayPlatform/routing/GraphImplementationRandom.cpp echo " CXX RayPlatform/routing/GraphImplementationComplete.o" CXX RayPlatform/routing/GraphImplementationComplete.o @@ -1082,15 +1118,6 @@ echo " CXX RayPlatform/routing/GraphImplementationKautz.o" CXX RayPlatform/routing/GraphImplementationKautz.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationKautz.o RayPlatform/routing/GraphImplementationKautz.cpp -echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" - CXX RayPlatform/routing/GraphImplementationExperimental.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp -echo " CXX RayPlatform/routing/GraphImplementationGroup.o" - CXX RayPlatform/routing/GraphImplementationGroup.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp -echo " CXX RayPlatform/routing/Polytope.o" - CXX RayPlatform/routing/Polytope.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp RayPlatform/routing/GraphImplementation.cpp: In member function 'void GraphImplementation::computeRoutes()': RayPlatform/routing/GraphImplementation.cpp:252:36: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] 252 | std::random_shuffle(pairs.begin(),pairs.end()); @@ -1100,6 +1127,15 @@ /usr/include/c++/14/bits/stl_algo.h:4492:5: note: declared here 4492 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) | ^~~~~~~~~~~~~~ +echo " CXX RayPlatform/routing/GraphImplementationExperimental.o" + CXX RayPlatform/routing/GraphImplementationExperimental.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationExperimental.o RayPlatform/routing/GraphImplementationExperimental.cpp +echo " CXX RayPlatform/routing/GraphImplementationGroup.o" + CXX RayPlatform/routing/GraphImplementationGroup.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/GraphImplementationGroup.o RayPlatform/routing/GraphImplementationGroup.cpp +echo " CXX RayPlatform/routing/Polytope.o" + CXX RayPlatform/routing/Polytope.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Polytope.o RayPlatform/routing/Polytope.cpp echo " CXX RayPlatform/routing/Torus.o" CXX RayPlatform/routing/Torus.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/routing/Torus.o RayPlatform/routing/Torus.cpp @@ -1180,9 +1216,9 @@ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MasterModeExecutor.o RayPlatform/handlers/MasterModeExecutor.cpp echo " CXX RayPlatform/handlers/SlaveModeExecutor.o" CXX RayPlatform/handlers/SlaveModeExecutor.o +aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp echo " CXX RayPlatform/handlers/MessageTagExecutor.o" CXX RayPlatform/handlers/MessageTagExecutor.o -aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/SlaveModeExecutor.o RayPlatform/handlers/SlaveModeExecutor.cpp aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ray-2.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -I/usr/lib/aarch64-linux-gnu/openmpi/include -I/usr/lib/aarch64-linux-gnu/openmpi/include/openmpi -D RAYPLATFORM_VERSION=\"2.0.1\" -I. -c -o RayPlatform/handlers/MessageTagExecutor.o RayPlatform/handlers/MessageTagExecutor.cpp echo " CXX RayPlatform/cryptography/crypto.o" CXX RayPlatform/cryptography/crypto.o @@ -1272,10 +1308,10 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ray-doc' in '../ray-doc_2.3.1-9_all.deb'. -dpkg-deb: building package 'ray-extra' in '../ray-extra_2.3.1-9_all.deb'. dpkg-deb: building package 'ray-dbgsym' in '../ray-dbgsym_2.3.1-9_arm64.deb'. dpkg-deb: building package 'ray' in '../ray_2.3.1-9_arm64.deb'. +dpkg-deb: building package 'ray-extra' in '../ray-extra_2.3.1-9_all.deb'. +dpkg-deb: building package 'ray-doc' in '../ray-doc_2.3.1-9_all.deb'. dpkg-genbuildinfo --build=binary -O../ray_2.3.1-9_arm64.buildinfo dpkg-genchanges --build=binary -O../ray_2.3.1-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1283,12 +1319,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3022180/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2288486 and its subdirectories -I: Current time: Mon Sep 7 06:44:05 -12 2026 -I: pbuilder-time-stamp: 1788806645 +I: removing directory /srv/workspace/pbuilder/3022180 and its subdirectories +I: Current time: Wed Aug 6 02:22:17 +14 2025 +I: pbuilder-time-stamp: 1754396537