Diff of the two buildlogs: -- --- b1/build.log 2025-07-31 08:35:17.234648327 +0000 +++ b2/build.log 2025-07-31 08:37:45.166834490 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 2 02:56:08 -12 2026 -I: pbuilder-time-stamp: 1788360968 +I: Current time: Thu Jul 31 22:35:21 +14 2025 +I: pbuilder-time-stamp: 1753950921 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying drop-git-in-gemspec.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2470764/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jul 31 08:35 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='b36e7177d2314ae8bdb19c7d9f1cbf0d' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2470764' - PS1='# ' - PS2='> ' + INVOCATION_ID=0c2296daf69748158a2db97cc63d3793 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=16522 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iA4Z6Qu1/pbuilderrc_OPan --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iA4Z6Qu1/b1 --logfile b1/build.log ruby-crb-blast_0.6.9-5.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.iA4Z6Qu1/pbuilderrc_sNLn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.iA4Z6Qu1/b2 --logfile b2/build.log ruby-crb-blast_0.6.9-5.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2470764/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -275,7 +307,7 @@ Get: 144 http://deb.debian.org/debian trixie/main arm64 ruby-shoulda all 4.0.0-3 [6352 B] Get: 145 http://deb.debian.org/debian trixie/main arm64 ruby-threach all 0.2.0-2 [5320 B] Get: 146 http://deb.debian.org/debian trixie/main arm64 ruby-trollop all 2.0-2.1 [17.0 kB] -Fetched 55.9 MB in 1s (60.6 MB/s) +Fetched 55.9 MB in 1s (87.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -762,8 +794,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Sep 2 14:57:03 UTC 2026. -Universal Time is now: Wed Sep 2 14:57:03 UTC 2026. +Local time is now: Thu Jul 31 08:36:23 UTC 2025. +Universal Time is now: Thu Jul 31 08:36:23 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up ruby-minitest (5.25.4-3) ... @@ -894,7 +926,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ruby-crb-blast-0.6.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ruby-crb-blast_0.6.9-5_source.changes dpkg-buildpackage: info: source package ruby-crb-blast dpkg-buildpackage: info: source version 0.6.9-5 dpkg-buildpackage: info: source distribution unstable @@ -973,38 +1009,38 @@ Loaded suite /usr/share/rubygems-integration/all/gems/rake-13.2.1/lib/rake/rake_test_loader Started Test2CRBBlast: - test: crb-blast should add secondary hits. : .: (1.254480) - test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.295415) - test: crb-blast should break input file into pieces. :.: (1.386559) - test: crb-blast should find reciprocals. : .: (1.133248) - test: crb-blast should get non reciprocal hits. : .: (1.323694) - test: crb-blast should load output should check if the databases exist. : .: (1.268388) - test: crb-blast should run blast should check if the databases exist yet. : .: (1.307553) - test: crb-blast should setup2 should run ok. : .: (1.202134) + test: crb-blast should add secondary hits. : .: (1.558863) + test: crb-blast should break input file into no more pieces than there are sequences. : .: (1.447579) + test: crb-blast should break input file into pieces. :.: (1.355630) + test: crb-blast should find reciprocals. : .: (1.432778) + test: crb-blast should get non reciprocal hits. : .: (0.965684) + test: crb-blast should load output should check if the databases exist. : .: (1.496794) + test: crb-blast should run blast should check if the databases exist yet. : .: (1.397974) + test: crb-blast should setup2 should run ok. : .: (1.300763) Test3CRBBlast: - test: crb-blast should raise error when files don't exist. : .: (0.000859) - test: crb-blast should run. : .: (1.238184) - test: crb-blast should work for query sequences with pipes. : .: (0.819850) + test: crb-blast should raise error when files don't exist. : .: (0.001058) + test: crb-blast should run. : .: (1.412453) + test: crb-blast should work for query sequences with pipes. : .: (1.091532) TestBinary: - test: crb-blast should run binary. : .: (0.326211) + test: crb-blast should run binary. : .: (0.338255) TestCRBBlast: - test: crb-blast should check if contig has reciprocal hit. : .: (1.419415) - test: crb-blast should determine that the target is a protein sequence. : .: (1.463787) - test: crb-blast should find reciprocals. : .: (1.215776) - test: crb-blast should get number of reciprocals. : .: (1.294460) - test: crb-blast should get query results. : .: (1.606827) - test: crb-blast should load outputs. : .: (1.300623) - test: crb-blast should not find fake scaffold name. : .: (1.299856) - test: crb-blast should output all reciprocal hits. : .: (1.449799) - test: crb-blast should run blast. : .: (1.390225) - test: crb-blast should setup should run ok. : .: (1.385505) + test: crb-blast should check if contig has reciprocal hit. : .: (1.137866) + test: crb-blast should determine that the target is a protein sequence. : .: (1.417635) + test: crb-blast should find reciprocals. : .: (1.543625) + test: crb-blast should get number of reciprocals. : .: (1.537635) + test: crb-blast should get query results. : .: (1.319270) + test: crb-blast should load outputs. : .: (1.282600) + test: crb-blast should not find fake scaffold name. : .: (1.385872) + test: crb-blast should output all reciprocal hits. : .: (1.121180) + test: crb-blast should run blast. : .: (0.738880) + test: crb-blast should setup should run ok. : .: (0.677687) -Finished in 26.38694268 seconds. +Finished in 25.967836608 seconds. ------------------------------------------------------------------------------- 22 tests, 42 assertions, 0 failures, 0 errors, 0 pendings, 0 omissions, 0 notifications 100% passed ------------------------------------------------------------------------------- -0.83 tests/s, 1.59 assertions/s +0.85 tests/s, 1.62 assertions/s ┌──────────────────────────────────────────────────────────────────────────────┐ │ dh_ruby --install finished │ @@ -1035,12 +1071,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/16522/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2470764 and its subdirectories -I: Current time: Wed Sep 2 02:58:16 -12 2026 -I: pbuilder-time-stamp: 1788361096 +I: removing directory /srv/workspace/pbuilder/16522 and its subdirectories +I: Current time: Thu Jul 31 22:37:44 +14 2025 +I: pbuilder-time-stamp: 1753951064