Diff of the two buildlogs: -- --- b1/build.log 2025-08-06 02:15:56.577038518 +0000 +++ b2/build.log 2025-08-06 02:16:40.101095048 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Sep 7 20:38:02 -12 2026 -I: pbuilder-time-stamp: 1788856682 +I: Current time: Wed Aug 6 16:15:59 +14 2025 +I: pbuilder-time-stamp: 1754446559 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/429693/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 6 02:16 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='cfafcb6d4a4f4a4a806539eac1a0a0c9' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='429693' - PS1='# ' - PS2='> ' + INVOCATION_ID=a989ee6063534d3098f8d2e87f77ac12 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2415703 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fblpreSB/pbuilderrc_N8p2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fblpreSB/b1 --logfile b1/build.log seaview_5.0.5-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.fblpreSB/pbuilderrc_ltHS --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.fblpreSB/b2 --logfile b2/build.log seaview_5.0.5-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/429693/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -228,7 +260,7 @@ Get: 107 http://deb.debian.org/debian trixie/main arm64 libxrender-dev arm64 1:0.9.12-1 [38.8 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libxft-dev arm64 2.3.6-1+b4 [72.0 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libxinerama-dev arm64 2:1.1.4-3+b4 [18.4 kB] -Fetched 64.0 MB in 0s (177 MB/s) +Fetched 64.0 MB in 0s (214 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -679,7 +711,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/seaview-5.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seaview_5.0.5-3_source.changes +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/seaview-5.0.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../seaview_5.0.5-3_source.changes dpkg-buildpackage: info: source package seaview dpkg-buildpackage: info: source version 1:5.0.5-3 dpkg-buildpackage: info: source distribution unstable @@ -702,80 +738,89 @@ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF custom.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF use_mase_files.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF regions.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF load_seq.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF align.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF xfmatpt.cxx +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF comlines.cxx +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF comlines.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF resource.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF nexus.cxx g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF viewasprots.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF racnuc_fetch.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -align.cxx: In function 'void replace_stars(char*)': -align.cxx:1302:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 1302 | fread(all, 1, l, in); - | ~~~~~^~~~~~~~~~~~~~~ regions.cxx: In function 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)': regions.cxx:313:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 313 | system(cmd); | ~~~~~~^~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx seaview.cxx: In function 'void delete_tmp_filename(const char*)': seaview.cxx:636:9: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 636 | system(fname); | ~~~~~~^~~~~~~ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ seaview.cxx: In function 'char* run_and_close_native_file_chooser(Fl_Native_File_Chooser*, int)': seaview.cxx:2899:45: warning: ignoring return value of 'int chdir(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 2899 | if( *last_visited_directory )chdir(last_visited_directory); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF concatenate.cxx -align.cxx: In function 'char* get_opt_resname(int)': -align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] - 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); - | ^~ -align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] - 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); - | ^~~~~~~~~~~~~~~~~ +align.cxx: In function 'void replace_stars(char*)': +align.cxx:1302:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 1302 | fread(all, 1, l, in); + | ~~~~~^~~~~~~~~~~~~~~ +regions.cxx:291:26: warning: '%s' directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] + 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); + | ^~ ~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, - from align.cxx:1: + from regions.cxx:1: In function 'int sprintf(char*, const char*, ...)', - inlined from 'char* get_opt_resname(int)' at align.cxx:991:8: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 + inlined from 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)' at regions.cxx:291:10: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 16 or more bytes (assuming 4111) into a destination of size 500 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF statistics.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -regions.cxx:291:26: warning: '%s' directive writing up to 4095 bytes into a region of size 496 [-Wformat-overflow=] - 291 | sprintf(cmd, "\"%s\" \"%s\" -p=s -t=%c", q, fname, view->protein?'p':'d'); - | ^~ ~~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx +seaview.cxx: In function 'void help_callback(Fl_Widget*, void*)': +seaview.cxx:3618:53: warning: '%s' directive argument is null [-Wformat-overflow=] + 3618 | "Help file %s\nnot found in PATH directories nor in current directory", help_file + | ^~ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +align.cxx: In function 'char* get_opt_resname(int)': +align.cxx:991:32: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] + 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); + | ^~ +align.cxx:991:18: note: directive argument in the range [-2147483647, 2147483647] + 991 | sprintf(resname, "msa_opt_args_%d", algonum + 1); + | ^~~~~~~~~~~~~~~~~ In file included from /usr/include/stdio.h:970, from seaview.h:3, - from regions.cxx:1: + from align.cxx:1: In function 'int sprintf(char*, const char*, ...)', - inlined from 'int create_gblocks_mask(SEA_VIEW*, region*, int, int, int, int, int)' at regions.cxx:291:10: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 16 or more bytes (assuming 4111) into a destination of size 500 + inlined from 'char* get_opt_resname(int)' at align.cxx:991:8: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx align.cxx: In function 'void delete_align_callback(Fl_Widget*, void*)': align.cxx:825:31: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 825 | sprintf(msa_name, "msa_name_%d", view->alignment_algorithm + 1); @@ -841,6 +886,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ align.cxx: In function 'void edit_align_callback(Fl_Widget*, void*)': align.cxx:944:30: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 944 | sprintf(resname, "msa_name_%d", view->alignment_algorithm + 1); @@ -870,26 +916,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF trees.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treedraw.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -align.cxx: In function 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)': -align.cxx:1345:42: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] - 1345 | sprintf(seqname[num], "S_%d", num); - | ^~ -align.cxx:1345:39: note: directive argument in the range [0, 2147483646] - 1345 | sprintf(seqname[num], "S_%d", num); - | ^~~~~~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)' at align.cxx:1345:10: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 4 and 13 bytes into a destination of size 10 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function 'void change_comput_params(Fl_Widget*, void*)': xfmatpt.cxx:750:24: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 750 | sprintf(tmp,"%d", fdui->identites); @@ -907,32 +933,58 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF addbootstrap.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': +trees.cxx:1301:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 1301 | fread(bootstrap_trees, l, 1, in); + | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ +trees.cxx: In function 'void command_line_phylogeny(int, char**)': +trees.cxx:2794:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 2794 | fread(utree, s, 1, in); + | ~~~~~^~~~~~~~~~~~~~~~~ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF least_squares_brl.cxx +align.cxx: In function 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)': +align.cxx:1345:42: warning: '%d' directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] + 1345 | sprintf(seqname[num], "S_%d", num); + | ^~ +align.cxx:1345:39: note: directive argument in the range [0, 2147483646] + 1345 | sprintf(seqname[num], "S_%d", num); + | ^~~~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'int save_fasta_file_no_gaponly(char*, char**, int, int*, int*)' at align.cxx:1345:10: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 4 and 13 bytes into a destination of size 10 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pseudoterminal.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -align.cxx: In function 'int command_line_align(int, char**)': -align.cxx:1507:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] - 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); - | ^~ -align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] - 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); - | ^~~~~~~~~~~~~~~~~ +seaview.cxx: In function 'void draw_header(Fl_Widget*, SEA_VIEW*)': +seaview.cxx:1124:23: warning: '%7d' directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=] + 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); + | ^~~ +In function 'void draw_header(Fl_Widget*, SEA_VIEW*)', + inlined from 'void draw_header(Fl_Widget*, SEA_VIEW*)' at seaview.cxx:1108:6: +seaview.cxx:1124:22: note: directive argument in the range [-2147483648, 2147483646] + 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); + | ^~~~~ +In file included from /usr/include/stdio.h:970, + from seaview.h:3, + from seaview.cxx:67: In function 'int sprintf(char*, const char*, ...)', - inlined from 'int command_line_align(int, char**)' at align.cxx:1507:12: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 + inlined from 'void draw_header(Fl_Widget*, SEA_VIEW*)' at seaview.cxx:1124:10, + inlined from 'void draw_header(Fl_Widget*, SEA_VIEW*)' at seaview.cxx:1108:6: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 8 and 12 bytes into a destination of size 10 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -seaview.cxx: In function 'void help_callback(Fl_Widget*, void*)': -seaview.cxx:3618:53: warning: '%s' directive argument is null [-Wformat-overflow=] - 3618 | "Help file %s\nnot found in PATH directories nor in current directory", help_file - | ^~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ pseudoterminal.cxx: In function 'int run_external_prog_in_pseudoterm(char*, const char*, const char*)': pseudoterminal.cxx:342:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 342 | freopen( (dialogfname ? dialogfname : slavename), "r", stdin); @@ -940,20 +992,6 @@ pseudoterminal.cxx:343:24: warning: ignoring return value of 'FILE* freopen(const char*, const char*, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 343 | freopen(slavename, "a", stderr); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF unrooted.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': -trees.cxx:1301:16: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 1301 | fread(bootstrap_trees, l, 1, in); - | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -trees.cxx: In function 'void command_line_phylogeny(int, char**)': -trees.cxx:2794:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 2794 | fread(utree, s, 1, in); - | ~~~~~^~~~~~~~~~~~~~~~~ xfmatpt.cxx: In function 'int really_close(FD_matpt*)': xfmatpt.cxx:889:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] 889 | free(matpt->seq1 + 1); @@ -961,8 +999,6 @@ xfmatpt.cxx:890:5: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] 890 | free(matpt->seq2 + 1); | ~~~~^~~~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ xfmatpt.cxx: In function 'void show_dot_plot(char*, char*, char*, char*, int, int, int, void*)': xfmatpt.cxx:124:21: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq1' with nonzero offset 1 [-Wfree-nonheap-object] 124 | free(matpt->seq1+1); @@ -970,51 +1006,28 @@ xfmatpt.cxx:125:21: warning: 'void free(void*)' called on pointer '*matpt.FD_matpt::seq2' with nonzero offset 1 [-Wfree-nonheap-object] 125 | free(matpt->seq2+1); | ~~~~^~~~~~~~~~~~~~~ -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF tbe.cxx -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treerecs_draw.cxx -g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_SVG_Image.cxx -cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF pdf_or_ps.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF svg.cxx cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/raa_acnuc.c -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/parser.c -seaview.cxx: In function 'void draw_header(Fl_Widget*, SEA_VIEW*)': -seaview.cxx:1124:23: warning: '%7d' directive writing between 7 and 11 bytes into a region of size 10 [-Wformat-overflow=] - 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); - | ^~~ -In function 'void draw_header(Fl_Widget*, SEA_VIEW*)', - inlined from 'void draw_header(Fl_Widget*, SEA_VIEW*)' at seaview.cxx:1108:6: -seaview.cxx:1124:22: note: directive argument in the range [-2147483648, 2147483646] - 1124 | sprintf(site_line, "%7d", view->first_site + view->tot_sites - 1); - | ^~~~~ -In file included from /usr/include/stdio.h:970, - from seaview.h:3, - from seaview.cxx:67: +align.cxx: In function 'int command_line_align(int, char**)': +align.cxx:1507:37: warning: '%d' directive writing between 1 and 11 bytes into a region of size 7 [-Wformat-overflow=] + 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); + | ^~ +align.cxx:1507:23: note: directive argument in the range [-2147483647, 2147483647] + 1507 | sprintf(opt_name, "msa_opt_args_%d", view->alignment_algorithm + 1); + | ^~~~~~~~~~~~~~~~~ In function 'int sprintf(char*, const char*, ...)', - inlined from 'void draw_header(Fl_Widget*, SEA_VIEW*)' at seaview.cxx:1124:10, - inlined from 'void draw_header(Fl_Widget*, SEA_VIEW*)' at seaview.cxx:1108:6: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 8 and 12 bytes into a destination of size 10 + inlined from 'int command_line_align(int, char**)' at align.cxx:1507:12: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 15 and 25 bytes into a destination of size 20 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/md5.c -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/zsockr.c -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/misc_acnuc.c -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/dnapars.c -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/protpars.c -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/seq.c -csrc/dnapars.c: In function 'dnapars': -csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 1685 | fread(tree, L, 1, outtree); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -csrc/protpars.c: In function 'protpars': -csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] - 2097 | fread(tree, L, 1, outtree); - | ^~~~~~~~~~~~~~~~~~~~~~~~~~ -gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/phylip.c +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF threads.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ trees.cxx: In function 'char* run_parsimony_method(SEA_VIEW*, int, const char*, int, int, int, int, Fl_Box*, dnapars_S_option, const char**, float, int, char**, void (*)(const char*, ...))': trees.cxx:2379:54: warning: '%d' directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=] 2379 | sprintf(tmp, "Bootstrap replicate: %d", j + 1); @@ -1050,6 +1063,42 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF tbe.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF treerecs_draw.cxx +g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -O3 -I. -Icsrc -DNO_PDF FL/Fl_SVG_Image.cxx +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/raa_acnuc.c +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/parser.c +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/md5.c +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/zsockr.c +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/misc_acnuc.c +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/dnapars.c +csrc/dnapars.c: In function 'dnapars': +csrc/dnapars.c:1685:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 1685 | fread(tree, L, 1, outtree); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/protpars.c +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/seq.c +csrc/protpars.c: In function 'protpars': +csrc/protpars.c:2097:5: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] + 2097 | fread(tree, L, 1, outtree); + | ^~~~~~~~~~~~~~~~~~~~~~~~~~ +trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': +trees.cxx:1181:56: warning: '%s' directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=] + 1181 | sprintf(args + strlen(args), " -u \"%s\"", tmp); + | ^~ ~~~ +In function 'int sprintf(char*, const char*, ...)', + inlined from 'void run_phyml_callback(Fl_Widget*, void*)' at trees.cxx:1181:13: +/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 4102 bytes into a destination of size 1000 + 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 31 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 32 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/phylip.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/lwl.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/bionj.c gcc -c -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/seaview-5.0.5=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DUSE_XFT -I/usr/include/freetype2 -DFLTK1 -Dunix -Icsrc -I. -DNO_PDF -DDEFAULT_HELPFILE=\"/usr/share/seaview/seaview.html\" -DPHYMLNAME=\"phyml\" -fPIC -Dunix -Icsrc csrc/phyml_util.c @@ -1079,19 +1128,6 @@ /usr/include/string.h:156:12: note: in a call to function 'int strcmp(const char*, const char*)' declared 'nonnull' 156 | extern int strcmp (const char *__s1, const char *__s2) | ^~~~~~ -trees.cxx: In function 'void run_phyml_callback(Fl_Widget*, void*)': -trees.cxx:1181:56: warning: '%s' directive writing up to 4095 bytes into a region of size 995 [-Wformat-overflow=] - 1181 | sprintf(args + strlen(args), " -u \"%s\"", tmp); - | ^~ ~~~ -In function 'int sprintf(char*, const char*, ...)', - inlined from 'void run_phyml_callback(Fl_Widget*, void*)' at trees.cxx:1181:13: -/usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 7 and 4102 bytes into a destination of size 1000 - 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 31 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 32 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ g++ -o seaview -Wl,-z,relro -Wl,-z,now seaview.o custom.o use_mase_files.o regions.o load_seq.o align.o xfmatpt.o comlines.o resource.o nexus.o viewasprots.o racnuc_fetch.o concatenate.o statistics.o trees.o treedraw.o addbootstrap.o least_squares_brl.o pseudoterminal.o unrooted.o pdf_or_ps.o svg.o threads.o tbe.o treerecs_draw.o Fl_SVG_Image.o raa_acnuc.o parser.o md5.o zsockr.o misc_acnuc.o dnapars.o protpars.o seq.o phylip.o lwl.o bionj.o phyml_util.o `fltk-config --use-images --ldflags` -ldl -lpthread -lz -Wl,-z,muldefs make[1]: Leaving directory '/build/reproducible-path/seaview-5.0.5' dh_auto_test @@ -1132,12 +1168,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2415703/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/429693 and its subdirectories -I: Current time: Mon Sep 7 20:38:55 -12 2026 -I: pbuilder-time-stamp: 1788856735 +I: removing directory /srv/workspace/pbuilder/2415703 and its subdirectories +I: Current time: Wed Aug 6 16:16:39 +14 2025 +I: pbuilder-time-stamp: 1754446599