Diff of the two buildlogs: -- --- b1/build.log 2025-09-13 18:31:39.846810124 +0000 +++ b2/build.log 2025-09-13 18:22:37.562132692 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Sep 13 06:23:07 -12 2025 -I: pbuilder-time-stamp: 1757787787 +I: Current time: Sat Oct 17 14:37:43 +14 2026 +I: pbuilder-time-stamp: 1792197463 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying 0004-Patch-to-use-libpwizlite-and-libhts-from-the-system.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2519744/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 17 00:37 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='0c482c1b602d48219eb552bbdafd2f8e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2519744' - PS1='# ' - PS2='> ' + INVOCATION_ID=ea57ce521f73467bb140eebc92b6f385 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=401004 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NwYOVeEm/pbuilderrc_0dLQ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NwYOVeEm/b1 --logfile b1/build.log toppic_1.5.3+dfsg1-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NwYOVeEm/pbuilderrc_CYD4 --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NwYOVeEm/b2 --logfile b2/build.log toppic_1.5.3+dfsg1-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2519744/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -440,7 +472,7 @@ Get: 281 http://deb.debian.org/debian forky/main arm64 qt5-qmake arm64 5.15.17+dfsg-2+b1 [225 kB] Get: 282 http://deb.debian.org/debian forky/main arm64 qtbase5-dev-tools arm64 5.15.17+dfsg-2+b1 [727 kB] Get: 283 http://deb.debian.org/debian forky/main arm64 qtbase5-dev arm64 5.15.17+dfsg-2+b1 [1124 kB] -Fetched 177 MB in 1s (250 MB/s) +Fetched 177 MB in 1s (260 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -1365,8 +1397,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Sep 13 18:23:44 UTC 2025. -Universal Time is now: Sat Sep 13 18:23:44 UTC 2025. +Local time is now: Sat Oct 17 00:38:27 UTC 2026. +Universal Time is now: Sat Oct 17 00:38:27 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libboost-atomic1.83.0:arm64 (1.83.0-4.2) ... @@ -1605,7 +1637,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/toppic-1.5.3+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../toppic_1.5.3+dfsg1-1_source.changes dpkg-buildpackage: info: source package toppic dpkg-buildpackage: info: source version 1.5.3+dfsg1-1 dpkg-buildpackage: info: source distribution unstable @@ -1692,8 +1728,8 @@ -- HtsLib_INCLUDE_DIRS: /usr/include -- HtsLib_LIBRARIES: hts -- cmake cxx flags -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX --- Configuring done (0.8s) --- Generating done (0.5s) +-- Configuring done (1.1s) +-- Generating done (0.6s) CMake Warning: Manually-specified variables were not used by the project: @@ -1721,222 +1757,250 @@ make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/depend cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/depend +make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/depend -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/depend -make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/depend -make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/depend -make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. +make -f CMakeFiles/topindex_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 0%] Built target topfd_autogen_timestamp_deps make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topindex_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build -make -f CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topindex_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/toppic_autogen_timestamp_deps.dir/build.make CMakeFiles/toppic_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +make[3]: Nothing to be done for 'CMakeFiles/toppic_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmg_autogen_timestamp_deps.dir/build.make CMakeFiles/topmg_autogen_timestamp_deps.dir/build +make -f CMakeFiles/topfd_autogen_timestamp_deps.dir/build.make CMakeFiles/topfd_autogen_timestamp_deps.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topfd_gui_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmg_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/topmg_gui_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. +make[3]: Nothing to be done for 'CMakeFiles/toppic_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topmerge_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_autogen_timestamp_deps.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. +make -f CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build +make[3]: Nothing to be done for 'CMakeFiles/topfd_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topdiff_autogen_timestamp_deps.dir/build.make CMakeFiles/topdiff_autogen_timestamp_deps.dir/build -[ 0%] Built target toppic_gui_autogen_timestamp_deps +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topmerge_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Nothing to be done for 'CMakeFiles/topdiff_gui_autogen_timestamp_deps.dir/build'. +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/topdiff_autogen_timestamp_deps.dir/build'. make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 0%] Built target topindex_gui_autogen_timestamp_deps +[ 0%] Built target topmg_gui_autogen_timestamp_deps +[ 0%] Built target topmg_autogen_timestamp_deps [ 0%] Built target topindex_autogen_timestamp_deps -make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend +[ 0%] Built target toppic_gui_autogen_timestamp_deps +make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/depend [ 0%] Built target toppic_autogen_timestamp_deps +make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend +make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen_timestamp_deps.dir/DependInfo.cmake "--color=" +[ 0%] Built target topfd_autogen_timestamp_deps +[ 0%] Built target topmerge_autogen_timestamp_deps +[ 0%] Built target topdiff_gui_autogen_timestamp_deps +make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend [ 0%] Built target topfd_gui_autogen_timestamp_deps -[ 0%] Built target topmg_gui_autogen_timestamp_deps +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/depend +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" +[ 0%] Built target topmerge_gui_autogen_timestamp_deps +[ 0%] Built target topdiff_autogen_timestamp_deps make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/depend +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 0%] Built target topindex_gui_autogen_timestamp_deps -make -f CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build.make CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" -[ 0%] Built target topmg_autogen_timestamp_deps -[ 0%] Built target topdiff_gui_autogen_timestamp_deps -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topmerge_gui_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 0%] Built target topmerge_autogen_timestamp_deps -make -f CMakeFiles/topconvert_autogen_timestamp_deps.dir/build.make CMakeFiles/topconvert_autogen_timestamp_deps.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Nothing to be done for 'CMakeFiles/topconvert_autogen_timestamp_deps.dir/build'. -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/depend +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/DependInfo.cmake "--color=" make -f CMakeFiles/topdiff_gui_autogen.dir/build.make CMakeFiles/topdiff_gui_autogen.dir/depend +make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/depend make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/depend -[ 0%] Built target topdiff_autogen_timestamp_deps +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" -make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/depend -make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/depend +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/DependInfo.cmake "--color=" -[ 0%] Built target topconvert_autogen_timestamp_deps -make -f CMakeFiles/topdiff_autogen.dir/build.make 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-cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/DependInfo.cmake "--color=" -[ 0%] Built target topmerge_gui_autogen_timestamp_deps make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build make -f CMakeFiles/topindex_autogen.dir/build.make CMakeFiles/topindex_autogen.dir/build make -f CMakeFiles/toppic_autogen.dir/build.make CMakeFiles/toppic_autogen.dir/build -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topmg_gui_autogen.dir/build.make CMakeFiles/topmg_gui_autogen.dir/build -make -f CMakeFiles/topmerge_autogen.dir/build.make CMakeFiles/topmerge_autogen.dir/build +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/toppic_gui_autogen.dir/build.make CMakeFiles/toppic_gui_autogen.dir/build +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topindex_gui_autogen.dir/build.make CMakeFiles/topindex_gui_autogen.dir/build +make -f CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend +make -f CMakeFiles/topfd_autogen.dir/build.make CMakeFiles/topfd_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topfd_gui_autogen.dir/build.make CMakeFiles/topfd_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topdiff_gui_autogen.dir/build.make 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'/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmg_autogen.dir/build.make CMakeFiles/topmg_autogen.dir/build -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/DependInfo.cmake "--color=" +[ 0%] Automatic MOC and UIC for target topmg +[ 0%] Automatic MOC and UIC for target topindex_gui [ 0%] Automatic MOC and UIC for target toppic -/usr/bin/cmake -E cmake_autogen 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CMakeFiles/topdiff_autogen.dir/build.make CMakeFiles/topdiff_autogen.dir/build -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Automatic MOC and UIC for target toppic_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenInfo.json release -make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/build -[ 1%] Automatic MOC and UIC for target topdiff_gui -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenInfo.json release /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenInfo.json release -[ 1%] Automatic MOC and UIC for target topmerge +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenInfo.json release +make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Automatic MOC and UIC for target topmerge +[ 1%] Automatic MOC and UIC for target topdiff_gui /usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenInfo.json release +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenInfo.json release AutoGen: Refreshing parse cache because it doesn't exist. -[ 1%] Automatic MOC and UIC for target topindex_gui -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -[ 1%] Automatic MOC and UIC for target topfd_gui -AutoGen: Refreshing parse cache because it doesn't exist. -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenInfo.json release -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenInfo.json release +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu AutoGen: Refreshing parse cache because it doesn't exist. -AutoGen: Refreshing parse cache because it doesn't exist. -[ 1%] Automatic MOC and UIC for target topmg -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenInfo.json release +[ 1%] Automatic MOC and UIC for target topmerge_gui AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenInfo.json release +AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -1981,3632 +2045,3858 @@ AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -[ 1%] Automatic MOC and UIC for target topdiff +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -[ 1%] Automatic MOC and UIC for target topconvert +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/console/topindex.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_autogen/deps" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h", because it doesn't exist. +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" -AutoGen: Refreshing parse cache because it doesn't exist. -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/timestamp +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenInfo.json release +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/ParseCache.txt" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_autogen.dir/AutogenUsed.txt" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Refreshing parse cache because it doesn't exist. AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h", because it doesn't exist. +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" +AutoGen: Parsing "SRC:/src/console/toppic.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/moc_predefs.h", because it doesn't exist. /usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Refreshing parse cache because it doesn't exist. +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/timestamp +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/console/topmg.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/console/topfd_argument.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" +AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.h" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.h" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topfd.cpp" -AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" -AutoGen: Parsing 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"SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_autogen/deps" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Refreshing parse cache because it doesn't exist. -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/moc_predefs.h", because it doesn't exist. -/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +AutoGen: Parsing "SRC:/src/console/topfd.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/console/topfd_argument.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/toppic_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/toppic_autogen/deps" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: 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"SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.cpp" +AutoGen: Parsing "SRC:/src/search/graph/dist.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.hpp" +AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/co_table.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex.cpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.cpp" +AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/timestamp +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_para.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/topfd/common/topfd_process.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_one_sp.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/topfd/deconv/deconv_process.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/co_table.hpp" +AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_a.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.hpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/dp_b.hpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" +AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex.hpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_a.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_b.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" -AutoGen: Parsing "SRC:/src/topfd/dp/vertex_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/topfd/envcnn/env_cnn.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_autogen/deps" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_detect.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.hpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.h" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.h" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/console/toppic.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/threadtopfd.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfd_gui.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/gui/topfd/topfddialog.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_argument.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/console/topindex_process.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/threadtopindex.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindex_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topindex/topindexdialog.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/threadtopindex.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/threadtopindex.h -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/timestamp AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.hpp" +AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_autogen/deps" AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.h" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.h" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" -AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.h" +AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" +AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.h" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" +AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" +AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/gui/topmg/threadtopmg.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmg_gui.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/gui/topmg/topmgwindow.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/timestamp AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/timestamp AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: 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"SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/deps" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" +AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" +AutoGen: 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"SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" AutoGen: Parsing "SRC:/src/common/base/ion.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing 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"SRC:/src/common/base/trunc_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" +AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" +AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" +AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" +AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" +AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/console/topmg_process.hpp" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.hpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: 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"SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.hpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" +AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" +AutoGen: Parsing 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"SRC:/src/prsm/prsm_table_writer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" +AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" -AutoGen: 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"SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" +AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing 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"SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" +AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" +AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: 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"SRC:/src/search/ptmsearch/ptm_slow_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/db_block.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/timestamp AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" +AutoGen: Parsing "SRC:/src/seq/alter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" +AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" +AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" +AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" +AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/break_point.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" +AutoGen: Parsing "SRC:/src/seq/db_block.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" +AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" +AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" +AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" +AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" +AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h +AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" +AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" +AutoGen: Parsing "SRC:/src/para/sp_para.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" +AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" +AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" +AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" +AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion.cpp" +AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" +AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" +AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/threadtopmg.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue.cpp" AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" +AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/toppic_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" +AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" +AutoGen: Parsing "SRC:/src/common/util/logger.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/toppic_autogen/deps" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" +AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_argument.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge.cpp" -AutoGen: Parsing "SRC:/src/console/topdiff_process.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/threadtopdiff.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiff_gui.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/gui/topdiff/topdiffdialog.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" +AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" +AutoGen: Parsing "SRC:/src/console/topmerge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" +AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/merge/feature_sample_merge.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" +AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" +AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" +AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" +AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +AutoGen: Parsing "SRC:/src/gui/topmerge/topmerge_gui.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" +AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_process.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" +AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" +AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" +AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/gui/toppic/threadtoppic.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/gui/toppic/toppic_gui.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/gui/toppic/toppicwindow.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" +AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing 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"SRC:/src/topfd/feature_detect/feature_detect.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" +AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" +AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/topfd/feature_detect/feature_para.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" +AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/pw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" +AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_group_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" +AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/topfd/msreader/raw_ms_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/topfd/spec/deconv_data_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" +AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" +AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" +AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/threadtopfd.hpp" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.hpp -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" +AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" +AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topmg.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/console/topmg_argument.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/console/topmg_process.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter.cpp" -AutoGen: Parsing "SRC:/src/filter/diag/diag_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/filter/index/diag_index.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/index/one_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/index/zero_ptm_index.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_factory.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/mass_match_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/filter/massmatch/prot_candidate.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/diag_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/index_file_name.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/one_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/filter/mng/zero_ptm_filter_mng.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/filter/oneptm/one_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/filter/zeroptm/zero_ptm_filter_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/dp_pair.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/one_ptm_slow_match.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/path_type.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ps_align.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/search/oneptmsearch/ptm_search_mng.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/ParseCache.txt" AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.hpp" -AutoGen: Parsing "SRC:/src/common/base/ion.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/common/base/ion_type.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.hpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.hpp" AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.hpp" -AutoGen: Parsing "SRC:/src/common/base/residue.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.hpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_autogen/deps" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.hpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.hpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.hpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.hpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.hpp" AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.hpp" -AutoGen: Parsing "SRC:/src/common/util/time_util.hpp" AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.hpp" AutoGen: Parsing "SRC:/src/seq/db_block.cpp" AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/console/topconvert_process.hpp" AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.hpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.hpp" AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.hpp" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.hpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.hpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.hpp" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.hpp" AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.hpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.hpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.hpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.hpp" AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.hpp" AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.hpp" AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.hpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.hpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.hpp" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.hpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.hpp" AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmerge_autogen/mocs_compilation.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.hpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmerge_autogen/deps" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/timestamp -AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/comp_shift_low_mem.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" -AutoGen: Parsing "SRC:/src/para/sp_para.hpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.hpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.hpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.hpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.hpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.hpp" -AutoGen: Parsing "SRC:/src/seq/alter.hpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.hpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.hpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.hpp" -AutoGen: Parsing "SRC:/src/seq/break_point.hpp" -AutoGen: Parsing "SRC:/src/seq/db_block.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.hpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.hpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.hpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.hpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/common/base/activation.cpp" -AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" -AutoGen: Parsing "SRC:/src/common/base/amino_acid_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/base_data.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/ion_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss.cpp" -AutoGen: Parsing "SRC:/src/common/base/neutral_loss_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/prot_mod_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/ptm_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_freq.cpp" -AutoGen: Parsing "SRC:/src/common/base/residue_util.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type.cpp" -AutoGen: Parsing "SRC:/src/common/base/support_peak_type_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_base.cpp" -AutoGen: Parsing "SRC:/src/common/base/trunc_util.cpp" -AutoGen: Parsing "SRC:/src/common/thread/simple_thread_pool.cpp" -AutoGen: Parsing "SRC:/src/common/util/file_util.cpp" -AutoGen: Parsing "SRC:/src/common/util/logger.cpp" -AutoGen: Parsing "SRC:/src/common/util/mem_check.cpp" -AutoGen: Parsing "SRC:/src/common/util/str_util.cpp" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_search_slow_filter.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/search/ptmsearch/ptm_slow_match.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_match.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_fast_search.cpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_search_processor.cpp" -AutoGen: Parsing "SRC:/src/search/zeroptmsearch/zero_ptm_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -[ 1%] Built target topindex_autogen -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_prob_value_array.cpp" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/timestamp -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_array.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/comp_pvalue_lookup_table.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/evalue_processor.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/timestamp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/prob_peak.cpp" -AutoGen: Parsing "SRC:/src/stat/tdgf/tdgf_mng.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -[ 1%] Built target topfd_autogen AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" @@ -5616,11 +5906,9 @@ AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" @@ -5629,78 +5917,11 @@ AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/depend -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/ParseCache.txt" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmerge_autogen.dir/AutogenUsed.txt" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/threadtoppic.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/threadtopdiff.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.h -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/timestamp AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" AutoGen: Parsing "SRC:/src/para/sp_para.cpp" @@ -5714,13 +5935,12 @@ AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" +[ 1%] Built target topindex_autogen AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" @@ -5744,20 +5964,6 @@ AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_header_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diag_pair_util.cpp" -AutoGen: Parsing "SRC:/src/search/diag/diagonal_util.cpp" -AutoGen: Parsing "SRC:/src/search/graph/dist.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_anno.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/proteo_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph.cpp" -AutoGen: Parsing "SRC:/src/search/graph/spec_graph_reader.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_align_processor.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_dp_node.cpp" -AutoGen: Parsing "SRC:/src/search/graphalign/graph_post_processor.cpp" AutoGen: Parsing "SRC:/src/seq/alter.cpp" AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" @@ -5778,11 +5984,11 @@ AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_test_num.cpp" -AutoGen: Parsing "SRC:/src/stat/count/count_util.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/comp_pvalue_mcmc.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_dpr_processor.cpp" -AutoGen: Parsing "SRC:/src/stat/mcmc/mcmc_mass_table_util.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" +make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/depend +AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" +AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" @@ -5792,211 +5998,73 @@ AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen.dir/DependInfo.cmake "--color=" AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_autogen/deps" -AutoGen: Parsing "SRC:/src/common/util/time_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_document.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" -AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topconvert.cpp" -AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" -AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" -AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" -AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" -AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_filter.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_refine.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_util.cpp" -AutoGen: Parsing "SRC:/src/ms/env/match_env_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/env/prec_env.cpp" -AutoGen: Parsing "SRC:/src/ms/env/real_env.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd.dir/DependInfo.cmake "--color=" -AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/feature_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/frac_xml_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/peak_cluster_score.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/sample_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/savitzky_golay.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/single_charge_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/deconv_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/env_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/peak_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/prm_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_group.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/raw_ms_util.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/rm_break_type.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/simple_msalign_reader.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/spectrum_set.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/support_peak.cpp" -AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.cpp" -AutoGen: Parsing "SRC:/src/para/peak_tolerance.cpp" -AutoGen: Parsing "SRC:/src/para/prsm_para.cpp" -AutoGen: Parsing "SRC:/src/para/sp_para.cpp" -AutoGen: Parsing "SRC:/src/prsm/expected_value.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair.cpp" -AutoGen: Parsing "SRC:/src/prsm/peak_ion_pair_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_algo.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_coverage.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_prob.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_reader_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_sample_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_simple_cluster.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_stat.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_top_selector.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/search_fasta_match.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_reader.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_str_merge.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_table_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_set.cpp" -AutoGen: Parsing "SRC:/src/prsm/simple_prsm_xml_writer_util.cpp" -AutoGen: Parsing "SRC:/src/prsm/theo_peak_util.cpp" -AutoGen: Parsing "SRC:/src/seq/alter.cpp" -AutoGen: Parsing "SRC:/src/seq/alter_type.cpp" -AutoGen: Parsing "SRC:/src/seq/amino_acid_replace.cpp" -AutoGen: Parsing "SRC:/src/seq/bp_spec.cpp" -AutoGen: Parsing "SRC:/src/seq/break_point.cpp" -AutoGen: Parsing "SRC:/src/seq/db_block.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_index_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_reader.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_sub_util.cpp" -AutoGen: Parsing "SRC:/src/seq/fasta_util.cpp" -AutoGen: Parsing "SRC:/src/seq/local_anno.cpp" -AutoGen: Parsing "SRC:/src/seq/mass_shift.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_factory.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_type.cpp" -AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" -AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" -AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topconvert_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topconvert_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmerge_gui_autogen.dir/build.make CMakeFiles/topmerge_gui_autogen.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' [ 1%] Built target toppic_autogen -Dependencies file "topfd_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd.dir/compiler_depend.internal". -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -Consolidate compiler generated dependencies of target topfd -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build -[ 1%] Built target topmerge_autogen +[ 1%] Built target topfd_autogen make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/depend -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 1%] Built target topdiff_autogen -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/depend [ 1%] Built target topmg_autogen -[ 1%] Automatic MOC and UIC for target topmerge_gui -make -f CMakeFiles/topmerge.dir/build.make CMakeFiles/topmerge.dir/depend -/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenInfo.json release +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/DependInfo.cmake "--color=" +make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/depend make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic.dir/DependInfo.cmake "--color=" +[ 1%] Built target topdiff_autogen make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge.dir/DependInfo.cmake "--color=" -[ 1%] Built target topconvert_autogen +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd.dir/DependInfo.cmake "--color=" +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topconvert_autogen.dir/build.make CMakeFiles/topconvert_autogen.dir/build make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/depend -[ 1%] Building CXX object CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Built target topmerge_autogen +make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/depend +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg.dir/DependInfo.cmake "--color=" +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/DependInfo.cmake "--color=" Dependencies file "topindex_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topindex.dir/compiler_depend.internal". Consolidate compiler generated dependencies of target topindex +Dependencies file "toppic_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic.dir/compiler_depend.internal". make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp make -f CMakeFiles/topindex.dir/build.make CMakeFiles/topindex.dir/build -Dependencies file "toppic_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/toppic.dir/compiler_depend.internal". -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg.dir/DependInfo.cmake "--color=" +[ 1%] Automatic MOC and UIC for target topconvert Consolidate compiler generated dependencies of target toppic -[ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd.cpp.o +/usr/bin/cmake -E cmake_autogen /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topconvert_autogen.dir/AutogenInfo.json release make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/toppic.dir/build.make CMakeFiles/toppic.dir/build -Dependencies file "topmerge_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge.dir/compiler_depend.internal". -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu -Consolidate compiler generated dependencies of target topmerge +Dependencies file "topfd_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topfd.dir/compiler_depend.internal". +Dependencies file "topdiff_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target topfd make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmerge.dir/build.make CMakeFiles/topmerge.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topfd.dir/build.make CMakeFiles/topfd.dir/build +Consolidate compiler generated dependencies of target topdiff +[ 1%] Building CXX object CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/build Dependencies file "topmg_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmg.dir/compiler_depend.internal". +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +AutoGen: Refreshing parse cache because it doesn't exist. +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topconvert_autogen/moc_predefs.h", because it doesn't exist. +/usr/bin/c++ -dM -E -c /usr/share/cmake-3.31/Modules/CMakeCXXCompilerABI.cpp -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu Consolidate compiler generated dependencies of target topmg make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topmg.dir/build.make CMakeFiles/topmg.dir/build -[ 1%] Building CXX object CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex.dir/topindex_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/mocs_compilation.cpp +[ 1%] Building CXX object CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -MF CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/mocs_compilation.cpp +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Building CXX object CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topfd.dir/topfd_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/mocs_compilation.cpp AutoGen: Parsing "SRC:/src/common/base/activation.hpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.hpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.hpp" @@ -6035,13 +6103,11 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_err_handler.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_impl.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.hpp" +[ 1%] Building CXX object CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.hpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_argument.hpp" -AutoGen: Parsing "SRC:/src/console/topmerge_process.hpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.h" -AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.h" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.h" +AutoGen: Parsing "SRC:/src/console/topconvert_process.hpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.hpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.hpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.hpp" @@ -6103,6 +6169,7 @@ AutoGen: Parsing "SRC:/src/ms/spec/support_peak.hpp" AutoGen: Parsing "SRC:/src/ms/spec/theo_peak.hpp" AutoGen: Parsing "SRC:/src/para/peak_tolerance.hpp" +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp AutoGen: Parsing "SRC:/src/para/prsm_para.hpp" AutoGen: Parsing "SRC:/src/para/sp_para.hpp" AutoGen: Parsing "SRC:/src/prsm/expected_value.hpp" @@ -6163,21 +6230,6 @@ AutoGen: Parsing "SRC:/src/seq/proteoform_util.hpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.hpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.hpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.hpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.hpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.hpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.hpp" AutoGen: Parsing "SRC:/src/common/base/activation.cpp" AutoGen: Parsing "SRC:/src/common/base/activation_base.cpp" AutoGen: Parsing "SRC:/src/common/base/amino_acid.cpp" @@ -6218,19 +6270,15 @@ AutoGen: Parsing "SRC:/src/common/xml/xml_dom_parser.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_dom_util.cpp" AutoGen: Parsing "SRC:/src/common/xml/xml_writer.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge_argument.cpp" -AutoGen: Parsing "SRC:/src/console/topmerge_process.cpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/threadtopmerge.cpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/topmerge_gui.cpp" -AutoGen: Parsing "SRC:/src/gui/topmerge/topmergedialog.cpp" -AutoGen: Parsing "SRC:/src/gui/util/run_exe.cpp" +AutoGen: Parsing "SRC:/src/console/topconvert.cpp" +AutoGen: Parsing "SRC:/src/console/topconvert_process.cpp" +AutoGen: Parsing "SRC:/src/console/toppic_argument.cpp" AutoGen: Parsing "SRC:/src/ms/env/charge_cmp.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_assign.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_base.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_detect.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_filter.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_para.cpp" -[ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o AutoGen: Parsing "SRC:/src/ms/env/env_peak_pair.cpp" AutoGen: Parsing "SRC:/src/ms/env/env_rescore.cpp" AutoGen: Parsing "SRC:/src/ms/env/envelope.cpp" @@ -6244,6 +6292,7 @@ AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/extend_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_factory.cpp" +[ 1%] Building CXX object CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o AutoGen: Parsing "SRC:/src/ms/factory/prm_ms_util.cpp" AutoGen: Parsing "SRC:/src/ms/factory/prm_peak_factory.cpp" AutoGen: Parsing "SRC:/src/ms/factory/spectrum_set_factory.cpp" @@ -6264,6 +6313,7 @@ AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_reader.cpp" AutoGen: Parsing "SRC:/src/ms/feature/spec_feature_writer.cpp" AutoGen: Parsing "SRC:/src/ms/spec/base_peak_type.cpp" +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg.dir/topmg_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/mocs_compilation.cpp AutoGen: Parsing "SRC:/src/ms/spec/baseline_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_json_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/deconv_ms_util.cpp" @@ -6272,8 +6322,6 @@ AutoGen: Parsing "SRC:/src/ms/spec/extend_peak.cpp" AutoGen: Parsing "SRC:/src/ms/spec/ms_header.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_frac_merge.cpp" -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd_argument.cpp -[ 1%] Building CXX object CMakeFiles/toppic.dir/toppic_autogen/mocs_compilation.cpp.o AutoGen: Parsing "SRC:/src/ms/spec/msalign_thread_merge.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_util.cpp" AutoGen: Parsing "SRC:/src/ms/spec/msalign_writer.cpp" @@ -6300,7 +6348,6 @@ AutoGen: Parsing "SRC:/src/prsm/prsm_cutoff_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_dia_selector.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_fdr.cpp" -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' AutoGen: Parsing "SRC:/src/prsm/prsm_feature_cluster.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_form_filter.cpp" AutoGen: Parsing "SRC:/src/prsm/prsm_match_table_writer.cpp" @@ -6349,128 +6396,118 @@ AutoGen: Parsing "SRC:/src/seq/proteoform_util.cpp" AutoGen: Parsing "SRC:/src/seq/residue_seq.cpp" AutoGen: Parsing "SRC:/src/seq/seq_segment.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_mng.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_processor.cpp" -[ 1%] Building CXX object CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o -AutoGen: Parsing "SRC:/src/stat/local/local_proteoform.cpp" -AutoGen: Parsing "SRC:/src/stat/local/local_util.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_cleavage.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_file_list.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_mass_shift.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_proteoform.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_prsm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_ptm_position.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_residue.cpp" -AutoGen: Parsing "SRC:/src/visual/anno_xml_util.cpp" -AutoGen: Parsing "SRC:/src/visual/json_transformer.cpp" -AutoGen: Parsing "SRC:/src/visual/xml_generator.cpp" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/threadtopmerge.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/threadtopmerge.h -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o -c 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CMakeFiles/toppic.dir/src/console/toppic.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff.cpp +[ 1%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_argument.cpp +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_threadtopfd.cpp.d" +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_threadtopdiff.cpp.d" AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.hpp" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.hpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.h -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex.cpp -[ 1%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_threadtopindex.cpp.d" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.h -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -MF CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o.d -o CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge.cpp -[ 1%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic.cpp -[ 1%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg.cpp -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 1%] Built target topfd_gui_autogen -[ 1%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_argument.cpp AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_threadtopmerge.cpp.d" AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.h -AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/timestamp AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/moc_topindexdialog.cpp.d" AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h", because it doesn't exist, from "SRC:/src/gui/topindex/topindexdialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include/gui/topindex/ui_topindexdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/topindexdialog.ui -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topindex_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topindex_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 1%] Built target topdiff_gui_autogen -make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/depend -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/DependInfo.cmake "--color=" -[ 1%] Built target topindex_gui_autogen -Dependencies file "topdiff_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff.dir/compiler_depend.internal". -Consolidate compiler generated dependencies of target topdiff -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topdiff.dir/build.make CMakeFiles/topdiff.dir/build -[ 1%] Building CXX object CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg.dir/src/console/topmg_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp -[ 1%] Building CXX object CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff.dir/topdiff_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/mocs_compilation.cpp -[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff.cpp +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/moc_topfddialog.cpp.d" +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h", because it doesn't exist, from "SRC:/src/gui/topfd/topfddialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include/ui_topfddialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfddialog.ui +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/moc_topdiffdialog.cpp.d" +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h", because it doesn't exist, from "SRC:/src/gui/topdiff/topdiffdialog.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include/gui/topdiff/ui_topdiffdialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.ui AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/moc_topmergedialog.cpp.d" AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h", because it doesn't exist, from "SRC:/src/gui/topmerge/topmergedialog.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include/gui/topmerge/ui_topmergedialog.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.ui +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topfd_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topfd_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/timestamp +[ 1%] Built target topindex_gui_autogen +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/timestamp AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmerge_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmerge_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/timestamp make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Building CXX object CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o -MF CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o.d -o CMakeFiles/topfd.dir/src/console/topfd_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topfd_argument.cpp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Built target topfd_gui_autogen +[ 1%] Built target topdiff_gui_autogen [ 1%] Built target topmerge_gui_autogen -[ 1%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge_argument.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include 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from "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp.d" -AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" -/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h +make -f CMakeFiles/topmerge.dir/build.make CMakeFiles/topmerge.dir/depend +[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_process.cpp +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge.dir/DependInfo.cmake "--color=" +[ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_para.cpp +Dependencies file "topmerge_autogen/deps" is newer than depends file "/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topmerge.dir/compiler_depend.internal". +Consolidate compiler generated dependencies of target topmerge +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmerge.dir/build.make CMakeFiles/topmerge.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Building CXX object CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge.dir/topmerge_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/mocs_compilation.cpp +[ 1%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -MF CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o.d -o CMakeFiles/topmerge.dir/src/console/topmerge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge.cpp AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_threadtoppic.cpp.d" AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.h" /usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/moc_predefs.h --output-dep-file -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp.d" +AutoMoc: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.h" +/usr/lib/qt5/bin/moc -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -I/usr/include -I/usr/include/c++/15 -I/usr/include/aarch64-linux-gnu/c++/15 -I/usr/include/c++/15/backward -I/usr/lib/gcc/aarch64-linux-gnu/15/include -I/usr/local/include -I/usr/include/aarch64-linux-gnu --include 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generated dependencies of target topmerge_gui +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +make -f CMakeFiles/topmerge_gui.dir/build.make CMakeFiles/topmerge_gui.dir/build +make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 1%] Building CXX object CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/mocs_compilation.cpp [ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_argument.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include 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from "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" -AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" -/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui -AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp" -AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/deps" -AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" -AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" -/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/timestamp -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 1%] Built target topmg_gui_autogen -[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -MF CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o.d -o CMakeFiles/topdiff.dir/src/console/topdiff_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topdiff_argument.cpp -[ 1%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -6482,25 +6519,54 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp:27: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 1%] Building CXX object CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/common/topfd_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_para.cpp +[ 1%] Building CXX object CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -MF CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o.d -o CMakeFiles/topindex.dir/src/console/topindex_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_process.cpp AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/moc_toppicwindow.cpp.d" AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h", because it doesn't exist, from "SRC:/src/gui/toppic/toppicwindow.ui" /usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include/ui_toppicwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.ui +AutoMoc: Reading dependencies from "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_topmgwindow.cpp.d" +AutoUic: Generating "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h", because it doesn't exist, from "SRC:/src/gui/topmg/topmgwindow.ui" +/usr/lib/qt5/bin/uic -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include/ui_topmgwindow.h /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.ui AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp" AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/toppic_gui_autogen/deps" AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/ParseCache.txt" AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/toppic_gui_autogen.dir/AutogenUsed.txt" /usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/timestamp +AutoMoc: Generating MOC compilation "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp" +AutoMoc: Merging MOC dependencies into "SRC:/obj-aarch64-linux-gnu/topmg_gui_autogen/deps" +AutoGen: Writing the parse cache file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/ParseCache.txt" +AutoGen: Writing the settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topmg_gui_autogen.dir/AutogenUsed.txt" +/usr/bin/cmake -E touch /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/timestamp +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' [ 1%] Built target toppic_gui_autogen +[ 1%] Built target topmg_gui_autogen +[ 1%] Building CXX object CMakeFiles/toppic.dir/src/console/toppic_argument.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/mocs_compilation.cpp.o -c 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-std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp:27: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, from /usr/include/boost/system/detail/config.hpp:11, from /usr/include/boost/system/detail/error_category.hpp:13, @@ -6549,99 +6601,50 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/threadtopdiff.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/threadtopdiff.cpp -[ 2%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmerge_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp +[ 1%] Building CXX object CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -MF CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert_process.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp:40: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert_process.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, - from /usr/include/boost/system/detail/config.hpp:11, - from /usr/include/boost/system/detail/error_category.hpp:13, - from /usr/include/boost/system/error_category.hpp:10, - from /usr/include/boost/filesystem/detail/path_traits.hpp:25, - from /usr/include/boost/filesystem/path.hpp:21, - from /usr/include/boost/filesystem.hpp:16, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:17: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/topmg.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 2%] Automatic RCC for src/gui/topmerge/icon.qrc -/usr/bin/cmake -E cmake_autorcc 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/mocs_compilation.cpp.o -c 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CMakeFiles/topindex.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiffdialog.cpp -[ 2%] Building CXX object CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp: In function 'int main(int, char**)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] +[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:19: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ -[ 2%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/co_table.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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1%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.cpp +[ 1%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 2%] Building CXX object CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o -MF CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o.d -o CMakeFiles/topmerge.dir/src/console/topmerge_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp:40: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/amino_acid_base.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/amino_acid_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 3%] Building CXX object CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/console/topmerge_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/common/topfd_process.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/threadtopfd.cpp:16: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 3%] Building CXX object CMakeFiles/toppic.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp:40: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +In file included from /usr/include/boost/system/detail/requires_cxx11.hpp:9, + from /usr/include/boost/system/detail/config.hpp:11, + from /usr/include/boost/system/detail/error_category.hpp:13, + from /usr/include/boost/system/error_category.hpp:10, + from /usr/include/boost/filesystem/detail/path_traits.hpp:25, + from /usr/include/boost/filesystem/path.hpp:21, + from /usr/include/boost/filesystem.hpp:16, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/deconv/deconv_process.cpp:17: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topindex/icon.qrc @@ -6669,79 +6741,55 @@ make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' make -f CMakeFiles/topindex_gui.dir/build.make CMakeFiles/topindex_gui.dir/build make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 3%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o +[ 4%] Building CXX object CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/mocs_compilation.cpp -[ 3%] Building CXX object CMakeFiles/topdiff.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -MF CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o.d -o CMakeFiles/topconvert.dir/src/console/topconvert_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert_process.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topconvert_process.cpp:17: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 3%] Building CXX object CMakeFiles/topindex.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topindex.dir/src/common/base/ion_type_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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+/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] 40 | QRect deskRect = desk->availableGeometry(); | ~~~~~~~~~~~~~~~~~~~~~~~^~ In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmerge_gui.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topfd/topfd_gui.cpp:18: /usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; | ^~~~~~~~~~~~~~~~~ +[ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ 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CMakeFiles/toppic_gui.dir/toppic_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/mocs_compilation.cpp -[ 4%] Building CXX object CMakeFiles/topindex_gui.dir/src/gui/topindex/topindex_gui.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/topmerge/topmergedialog.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmerge/topmergedialog.cpp +[ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -6774,57 +6818,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 4%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp -[ 4%] Building CXX object 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -6835,59 +6836,79 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 5%] Building CXX object CMakeFiles/toppic.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 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CMakeFiles/topmerge_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -6899,116 +6920,60 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 7%] Building CXX object CMakeFiles/topindex.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/topfd/dp/dp_a.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h:32, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h:25, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.cpp:30: + from /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/../../../src/gui/topmg/threadtopmg.h:31, + from /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp:10, + from /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp:2: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 9%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp -[ 9%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/amino_acid_base.cpp.o -[ 9%] Building CXX object CMakeFiles/toppic.dir/src/common/base/ptm_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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-/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: warning: template-id not allowed for constructor in C++20 [-Wtemplate-id-cdtor] - 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : - | ^ -/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: note: remove the '< >' -[ 9%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/neutral_loss_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ 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CMakeFiles/topdiff.dir/src/common/base/prot_mod_util.cpp.o +[ 6%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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object CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 36 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppic_gui.cpp:18: +/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 6%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/dp/dp_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_b.cpp +[ 6%] Building CXX object CMakeFiles/topindex.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 6%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/toppic/toppicwindow.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.cpp +[ 6%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmerge_process.cpp:40: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/threadtoppic.h:32, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.h:25, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/toppic/toppicwindow.cpp:30: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 9%] Building CXX object CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 9%] Building CXX object CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o -MF CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/console/topindex_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_process.cpp -[ 9%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topmerge_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 6%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h:31, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.cpp:17: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 6%] Building CXX object CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o -MF CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/console/topindex_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topindex_argument.cpp +[ 7%] Building CXX object CMakeFiles/toppic.dir/src/common/base/neutral_loss.cpp.o +[ 7%] Building CXX object CMakeFiles/topindex.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h:31, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:20: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 8%] Building CXX object CMakeFiles/topfd.dir/src/topfd/dp/vertex_util.cpp.o +/usr/bin/c++ 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CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:36:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 36 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:18: +/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 9%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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[-Wtemplate-id-cdtor] + 146 | array_back_insert_iterator(const array_back_insert_iterator& other) : + | ^ +/build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/container_common.hpp:146:41: note: remove the '< >' +[ 9%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 10%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topindex.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h:31, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.cpp:30: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 10%] Building CXX object CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 11%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 11%] Building CXX object CMakeFiles/topmg.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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thread_ptr_vec_.empty(); @@ -7217,6 +7258,30 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ +[ 11%] Building CXX object CMakeFiles/topindex.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] 93 | thread_ptr_vec_.empty(); @@ -7227,64 +7292,28 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ -[ 11%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite 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-/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o -MF 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CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7300,6 +7329,34 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ +[ 12%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7315,24 +7372,72 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 12%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 13%] Building CXX object CMakeFiles/topindex.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] + 93 | thread_ptr_vec_.empty(); + | ~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 13%] Building CXX object CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 13%] Building CXX object CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] + 93 | thread_ptr_vec_.empty(); + | ~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 13%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 13%] Building CXX object CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 13%] Building CXX object CMakeFiles/toppic_gui.dir/src/console/toppic_process.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/console/toppic_process.cpp.o -MF CMakeFiles/toppic_gui.dir/src/console/toppic_process.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/console/toppic_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp +[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/toppic_process.cpp:27: @@ -7340,6 +7445,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 13%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/dp_b.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/dp_b.cpp +[ 13%] Building CXX object CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 13%] Building CXX object CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] 93 | thread_ptr_vec_.empty(); @@ -7350,30 +7463,40 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ -[ 13%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 13%] Building CXX object CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o -MF CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/console/topmg_argument.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_argument.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] 93 | thread_ptr_vec_.empty(); | ~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 13%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 13%] Building CXX object CMakeFiles/topdiff.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 13%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 13%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/dp/vertex.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/dp/vertex.cpp +[ 13%] Building CXX object CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 13%] Building CXX object CMakeFiles/topdiff.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topdiff.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7389,46 +7512,10 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -In file included from /usr/include/c++/15/vector:68, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: -/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here - 1223 | empty() const _GLIBCXX_NOEXCEPT - | ^~~~~ -[ 13%] Building CXX object CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -7444,20 +7531,22 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 13%] Building CXX object CMakeFiles/topdiff.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 18%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 18%] Building CXX object CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -MF 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 19%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp -[ 19%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -[ 19%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 19%] Building CXX object CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -[ 19%] Building CXX object CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 14%] Building CXX object CMakeFiles/toppic.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 14%] Building CXX object CMakeFiles/topmg.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 16%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 16%] Building CXX object CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o -MF CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/console/topmg_process.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_process.cpp +[ 16%] Building CXX object CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 20%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_process.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 20%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fplus/fplus.hpp:11, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/common.hpp:31, from /build/reproducible-path/toppic-1.5.3+dfsg1/ext/fdeep/fdeep.hpp:9, @@ -7779,27 +7715,47 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -[ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp -[ 20%] Building CXX object CMakeFiles/topdiff.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_impl.cpp.o 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 16%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 16%] Building CXX object CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ 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CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 16%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 16%] Building CXX object CMakeFiles/topindex.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topindex.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 16%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 16%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 16%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 16%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 16%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: @@ -7807,69 +7763,94 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 20%] Building CXX object CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 21%] Building CXX object CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 18%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 21%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 21%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -[ 21%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +[ 18%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 18%] Building CXX object CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 18%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 18%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 18%] Building CXX object CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 18%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 18%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 18%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 18%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 18%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 18%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter.cpp.o +[ 19%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 21%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp -[ 21%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp -[ 21%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 19%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 19%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +[ 19%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 19%] Building CXX object CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 19%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 19%] Building CXX object CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: @@ -7877,16 +7858,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 21%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp -[ 21%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 21%] Building CXX object CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 21%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -[ 21%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 19%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 19%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 20%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 20%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, @@ -7895,28 +7874,32 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 21%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -[ 21%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 22%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: +[ 20%] Building CXX object CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 22%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d 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-Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 20%] Building CXX object CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 20%] Building CXX object CMakeFiles/topmerge.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 20%] Building CXX object CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: @@ -7924,8 +7907,22 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 20%] Building CXX object CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 20%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 20%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: @@ -7933,49 +7930,111 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 20%] Building CXX object CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 20%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 21%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 21%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 21%] Building CXX object CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 21%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -MF CMakeFiles/toppic.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 22%] Building CXX object CMakeFiles/topmg.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -MF CMakeFiles/toppic.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 22%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp [ 22%] Building CXX object CMakeFiles/topmg.dir/src/seq/db_block.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o +[ 22%] Building CXX object CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 22%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 22%] Building CXX object CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp -[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 22%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp [ 22%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 22%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 22%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: @@ -7983,8 +8042,23 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 22%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 22%] Building CXX object CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o +[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: @@ -7992,24 +8066,26 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 22%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 22%] Building CXX object CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 22%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp -[ 22%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -[ 22%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -8021,83 +8097,55 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 22%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 23%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -[ 22%] Building CXX object CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp +[ 23%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 22%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp -[ 22%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 22%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -[ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/fasta_util.cpp.o -MF 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp -[ 23%] Building CXX object CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: @@ -8105,23 +8153,21 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 23%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp [ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: @@ -8129,39 +8175,31 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o +[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] - 93 | thread_ptr_vec_.empty(); - | ~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/15/vector:68, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: -/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here - 1223 | empty() const _GLIBCXX_NOEXCEPT - | ^~~~~ [ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, @@ -8172,18 +8210,21 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 23%] Building CXX object CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -[ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: @@ -8191,6 +8232,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp +[ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: @@ -8198,18 +8245,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp -[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 23%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp -[ 23%] Building CXX object CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o +[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -8222,7 +8263,10 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8231,13 +8275,79 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 23%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o +[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 23%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp +[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 23%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 23%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] @@ -8249,55 +8359,15 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ -[ 24%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -[ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -[ 24%] Building CXX object CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: @@ -8305,14 +8375,24 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o +[ 23%] Building CXX object CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp +[ 23%] Building CXX object CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 23%] Building CXX object CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp -[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -MF 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 23%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: @@ -8320,16 +8400,26 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 23%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp +[ 23%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp +[ 23%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 24%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp +[ 24%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: @@ -8337,17 +8427,25 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -[ 24%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 24%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +[ 24%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 24%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +[ 24%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: @@ -8355,27 +8453,19 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp -[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 24%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 24%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -8391,21 +8481,20 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ +[ 24%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 24%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 24%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 25%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -[ 25%] Building CXX object CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, @@ -8414,10 +8503,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 25%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 24%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 24%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: @@ -8425,12 +8514,19 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 26%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 26%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 26%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 24%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 25%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8439,30 +8535,12 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 26%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 26%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 26%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 26%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 25%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp +[ 25%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 25%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -8471,27 +8549,27 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 25%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 25%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 26%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 26%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 25%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 25%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ 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CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 26%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp -[ 26%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: @@ -8499,16 +8577,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 26%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o +[ 25%] Building CXX object CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 25%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 27%] Building CXX object CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 25%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: @@ -8516,47 +8590,24 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 27%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type.cpp.o +[ 25%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp +[ 25%] Building CXX object CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 25%] Building CXX object CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/support_peak_type_base.cpp.o +[ 25%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 28%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 28%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 29%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 29%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 29%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 29%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: @@ -8564,33 +8615,39 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 29%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 30%] Building CXX object CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topdiff.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 25%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 25%] Building CXX object CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 25%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 25%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 25%] Building CXX object CMakeFiles/topindex.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topindex.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topindex.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 25%] Building CXX object CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topindex.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 25%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp +[ 26%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 26%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 27%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 27%] Building CXX object CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 27%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 27%] Building CXX object CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -8599,26 +8656,22 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o +[ 27%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 27%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp +[ 27%] Building CXX object CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 28%] Building CXX object CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -8627,19 +8680,7 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -[ 30%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o +[ 28%] Building CXX object CMakeFiles/topmerge.dir/src/seq/proteoform_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time 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-8661,91 +8724,80 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ -[ 30%] Building CXX object CMakeFiles/topindex.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -MF 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -[ 30%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 30%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topindex.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 28%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 28%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:25: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 30%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 28%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 28%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 28%] Building CXX object CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/toppic.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 28%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 28%] Building CXX object CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 28%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +[ 28%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/seq/seq_segment.cpp.o +[ 28%] Building CXX object CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 28%] Building CXX object CMakeFiles/toppic.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 28%] Building CXX object CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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CMakeFiles/topmerge.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topindex.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, - from /usr/include/boost/typeof/typeof.hpp:16, - from /usr/include/boost/numeric/ublas/traits.hpp:29, - from /usr/include/boost/numeric/ublas/storage.hpp:27, - from /usr/include/boost/numeric/ublas/vector.hpp:21, - from /usr/include/boost/numeric/ublas/matrix.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -[ 30%] Building CXX object CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp -[ 30%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp -[ 30%] Building CXX object CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o +[ 28%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp +[ 28%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 28%] Building CXX object CMakeFiles/topmerge.dir/src/para/prsm_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 28%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 28%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 28%] Building CXX object CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topdiff.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 29%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 29%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 29%] Building CXX object CMakeFiles/toppic.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -MF CMakeFiles/toppic.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/toppic.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: @@ -8850,17 +8846,28 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp +[ 29%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 29%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 29%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 29%] Building CXX object CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 29%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 29%] Building CXX object CMakeFiles/topmg.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: @@ -8868,32 +8875,56 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 30%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 30%] Building CXX object CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp [ 30%] Building CXX object CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmerge.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_seq.cpp.o -MF 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 31%] Building CXX object CMakeFiles/topconvert.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 31%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include 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CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 31%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: @@ -8901,22 +8932,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 30%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o +[ 31%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 31%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 31%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 31%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, @@ -8925,25 +8948,24 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 30%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 30%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 30%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o +[ 31%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 31%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 31%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 31%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 31%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 31%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, @@ -8952,19 +8974,16 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o +[ 31%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 31%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/util/time_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 32%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o +[ 32%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 32%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -8973,160 +8992,106 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topmerge_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 30%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 30%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 32%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 32%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o +In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, + from /usr/include/boost/typeof/typeof.hpp:16, + from /usr/include/boost/numeric/ublas/traits.hpp:29, + from /usr/include/boost/numeric/ublas/storage.hpp:27, + from /usr/include/boost/numeric/ublas/vector.hpp:21, + from /usr/include/boost/numeric/ublas/matrix.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 32%] Building CXX object CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 30%] Building CXX object CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 32%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 32%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 32%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 30%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 30%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -[ 30%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 30%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/env_rescore.cpp.o -MF 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp -[ 32%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp +[ 32%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] + 93 | thread_ptr_vec_.empty(); + | ~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ [ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 32%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 32%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 32%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -[ 32%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 32%] Building CXX object CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 32%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 32%] Building CXX object CMakeFiles/toppic_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 33%] Building CXX object CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topconvert.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 33%] Building CXX object CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 33%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -[ 33%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /usr/include/boost/lexical_cast.hpp:26, - from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, - from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, - from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 33%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 33%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 33%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ 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-mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 33%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o +[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: @@ -9134,62 +9099,94 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp: In member function 'bool toppic::PwMsReader::readOneMs(int, toppic::PeakPtrVec&, toppic::MsHeaderPtr&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:64:18: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] - 64 | peak_list.empty(); - | ~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/15/vector:68, - from /usr/include/pwizlite/pwiz/utility/misc/BinaryData.hpp:30, - from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:29: -/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here - 1223 | empty() const _GLIBCXX_NOEXCEPT - | ^~~~~ -[ 33%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 33%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 33%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp [ 33%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 33%] Building CXX object CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp -[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp:24: +[ 33%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 33%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 33%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 34%] Building CXX object CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/feature_detect/feature_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_para.cpp [ 34%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 34%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: @@ -9197,12 +9194,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 34%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 34%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp [ 34%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, @@ -9210,28 +9203,15 @@ from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 34%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 34%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 34%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 34%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 34%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 34%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp [ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, @@ -9240,48 +9220,81 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, - from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, - from /usr/include/boost/shared_ptr.hpp:17, - from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, - from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, - from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 35%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_para.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 35%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/pw_ms_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp +[ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp -[ 35%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 35%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 35%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 35%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +In file included from /usr/include/boost/lexical_cast.hpp:26, + from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, + from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:30, + from /usr/include/pwizlite/pwiz/data/msdata/SpectrumInfo.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:15: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp: In member function 'bool toppic::PwMsReader::readOneMs(int, toppic::PeakPtrVec&, toppic::MsHeaderPtr&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:64:18: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] + 64 | peak_list.empty(); + | ~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /usr/include/pwizlite/pwiz/utility/misc/BinaryData.hpp:30, + from /usr/include/pwizlite/pwiz/data/msdata/MSData.hpp:29: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 35%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o +[ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_seq.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -[ 36%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 35%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: @@ -9289,8 +9302,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 35%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 35%] Building CXX object CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -9299,18 +9316,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 36%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 36%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp -[ 36%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp -[ 36%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp -[ 36%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, @@ -9319,14 +9326,16 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 36%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 36%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o +[ 35%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 35%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 35%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 36%] Building CXX object CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 35%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: @@ -9334,8 +9343,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 36%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 35%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 35%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 154 | fai_build(db_file_name.c_str()); @@ -9344,14 +9355,38 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 202 | fai_build(new_db_file_name.c_str()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 37%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topmerge_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp -[ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall 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CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 36%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include 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CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 36%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -9359,136 +9394,140 @@ from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_group_reader.cpp:19: /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 36%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 36%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 37%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 37%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 37%] Building CXX object CMakeFiles/topmg.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 37%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/env_peak_pair.cpp.o [ 37%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 37%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 37%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 37%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 38%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 38%] Building CXX object CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 39%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 39%] Building CXX object CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 39%] Building CXX object CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 39%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env.cpp.o -[ 39%] Building CXX object CMakeFiles/topmerge.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data_util.cpp -[ 39%] Building CXX object CMakeFiles/topmerge_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 39%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 39%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -[ 39%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 39%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation.cpp -[ 39%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o +[ 37%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, + from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, + from /usr/include/boost/shared_ptr.hpp:17, + from /usr/include/pwizlite/pwiz/utility/misc/IterationListener.hpp:29, + from /usr/include/pwizlite/pwiz/data/msdata/Reader.hpp:28, + from /usr/include/pwizlite/pwiz/data/msdata/DefaultReaderList.hpp:29, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp:19: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp +[ 37%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 37%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 39%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o -[ 39%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topindex.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, + from /usr/include/boost/typeof/typeof.hpp:16, + from /usr/include/boost/numeric/ublas/traits.hpp:29, + from /usr/include/boost/numeric/ublas/storage.hpp:27, + from /usr/include/boost/numeric/ublas/vector.hpp:21, + from /usr/include/boost/numeric/ublas/matrix.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: +/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' + 10 | BOOST_HEADER_DEPRECATED("") + | ^~~~~~~~~~~~~~~~~~~~~~~ +[ 37%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, @@ -9497,18 +9536,28 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 39%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp -[ 39%] Building CXX object CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 39%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 39%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o +[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 37%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 37%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 37%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 37%] Building CXX object CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/msreader/raw_ms_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_writer.cpp +[ 37%] Building CXX object CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: @@ -9516,69 +9565,100 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp -[ 39%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 39%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include 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CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 37%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 37%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 37%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 37%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 38%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 38%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 38%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 38%] Building CXX object CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ 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CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 39%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp +[ 39%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp [ 39%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 39%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 39%] Building CXX object CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/feature_detect/feature_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:25: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 39%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 39%] Building CXX object CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o -[ 39%] Building CXX object CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp -[ 39%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 39%] Building CXX object CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -MF CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o.d -o CMakeFiles/topfd.dir/src/topfd/spec/deconv_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/spec/deconv_data.cpp +[ 39%] Building CXX object CMakeFiles/topconvert.dir/src/ms/factory/prm_ms_util.cpp.o 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 39%] Building CXX object CMakeFiles/topmerge.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -9587,96 +9667,33 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -[ 39%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 39%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -In file included from /usr/include/boost/typeof/detail/requires_cxx11.hpp:9, - from /usr/include/boost/typeof/typeof.hpp:16, - from /usr/include/boost/numeric/ublas/traits.hpp:29, - from /usr/include/boost/numeric/ublas/storage.hpp:27, - from /usr/include/boost/numeric/ublas/vector.hpp:21, - from /usr/include/boost/numeric/ublas/matrix.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.hpp:27, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/feature_detect/feature_detect.cpp:37: -/usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' - 10 | BOOST_HEADER_DEPRECATED("") - | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 39%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 39%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 39%] Building CXX object CMakeFiles/topindex.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_autogen/include 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target topmg_gui -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -make -f CMakeFiles/topmg_gui.dir/build.make CMakeFiles/topmg_gui.dir/build -make[3]: Entering directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 41%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -MF CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o.d -o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/mocs_compilation.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp +[ 40%] Building CXX object CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 40%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/../../../src/gui/topmg/threadtopmg.h:31, - from /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/moc_threadtopmg.cpp:10, - from /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/mocs_compilation.cpp:2: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 41%] Building CXX object CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_detect.cpp.o 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 40%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 40%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/pw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp -[ 41%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topfd.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -[ 42%] Building CXX object CMakeFiles/topmerge.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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cmake_autorcc /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Info.json release +AutoRcc: Generating "SRC:/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp", because it doesn't exist, from "SRC:/src/gui/topdiff/icon.qrc" +/usr/lib/qt5/bin/rcc -name icon -o /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/icon.qrc +AutoRcc: Writing settings file "SRC:/obj-aarch64-linux-gnu/CMakeFiles/topdiff_gui_autogen.dir/AutoRcc_icon_4YKSSMFELI_Used.txt" +cd /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1 /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp In file included from /usr/include/boost/lexical_cast.hpp:26, from /usr/include/pwizlite/pwiz/utility/misc/optimized_lexical_cast.hpp:29, from /usr/include/pwizlite/pwiz/data/common/ParamTypes.hpp:29, @@ -9803,10 +9767,12 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 41%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp: In member function 'bool toppic::PwMsReader::readOneMs(int, toppic::PeakPtrVec&, toppic::MsHeaderPtr&)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/pw_ms_reader.cpp:64:18: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] 64 | peak_list.empty(); @@ -9817,74 +9783,69 @@ /usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here 1223 | empty() const _GLIBCXX_NOEXCEPT | ^~~~~ -[ 42%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 42%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/threadtopmg.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 41%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp +[ 41%] Building CXX object CMakeFiles/toppic_gui.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. 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CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 41%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 41%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 41%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h:31, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 43%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp -[ 43%] Building CXX object CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp -[ 43%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 44%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 44%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 44%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiff_gui.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp +[ 42%] Building CXX object CMakeFiles/topfd.dir/src/common/base/mod_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 42%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp: In function 'int main(int, char**)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:40:43: warning: 'const QRect QDesktopWidget::availableGeometry(int) const' is deprecated: Use QGuiApplication::screens() [-Wdeprecated-declarations] + 40 | QRect deskRect = desk->availableGeometry(); + | ~~~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/aarch64-linux-gnu/qt5/QtWidgets/QDesktopWidget:1, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topdiff/topdiff_gui.cpp:19: +/usr/include/aarch64-linux-gnu/qt5/QtWidgets/qdesktopwidget.h:88:67: note: declared here + 88 | QT_DEPRECATED_X("Use QGuiApplication::screens()") const QRect availableGeometry(int screen = -1) const; + | ^~~~~~~~~~~~~~~~~ +[ 42%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/topdiff/topdiffdialog.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 42%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o +[ 42%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h:31, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmg_gui.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 45%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 45%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 45%] Building CXX object CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 45%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 45%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 46%] Building CXX object CMakeFiles/topdiff.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/topfd/msreader/raw_ms_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/topfd/msreader/raw_ms_reader.cpp -[ 46%] Building CXX object CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 46%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 47%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 47%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 47%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/topmg/topmgwindow.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/threadtopmg.h:31, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.h:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/topmg/topmgwindow.cpp:30: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 47%] Building CXX object CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp -[ 47%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 47%] Building CXX object CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 47%] Building CXX object CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 47%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp In file included from /usr/include/boost/smart_ptr/detail/requires_cxx11.hpp:9, from /usr/include/boost/smart_ptr/shared_ptr.hpp:17, from /usr/include/boost/shared_ptr.hpp:17, @@ -10022,40 +9935,280 @@ /usr/include/boost/iterator.hpp:10:1: note: '#pragma message: This header is deprecated. Use instead.' 10 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ -[ 47%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +[ 45%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 45%] Building CXX object 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 46%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 46%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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object CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topindex_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp +[ 49%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -10129,408 +10306,348 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: 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CMakeFiles/topfd_gui.dir/src/common/base/neutral_loss.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 54%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp +[ 55%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 49%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 49%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o 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-ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 55%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 55%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 49%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 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-Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 49%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp -[ 49%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -/src/seq/proteoform.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteoform_factory.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteoform_type.cpp.o CMakeFiles/topindex_gui.dir/src/seq/proteoform_util.cpp.o CMakeFiles/topindex_gui.dir/src/seq/residue_seq.cpp.o CMakeFiles/topindex_gui.dir/src/seq/seq_segment.cpp.o CMakeFiles/topindex_gui.dir/src/para/peak_tolerance.cpp.o CMakeFiles/topindex_gui.dir/src/para/prsm_para.cpp.o CMakeFiles/topindex_gui.dir/src/para/sp_para.cpp.o CMakeFiles/topindex_gui.dir/src/filter/index/diag_index.cpp.o CMakeFiles/topindex_gui.dir/src/filter/index/one_ptm_index.cpp.o CMakeFiles/topindex_gui.dir/src/filter/index/zero_ptm_index.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/mass_match_util.cpp.o CMakeFiles/topindex_gui.dir/src/filter/massmatch/prot_candidate.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/diag_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/index_file_name.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o CMakeFiles/topindex_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topindex_gui.dir/topindex_gui_autogen/PJRF6ORA5X/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topindex_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_serialization -lboost_system -lboost_thread -lboost_iostreams -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 49%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_base.cpp -[ 49%] Built target topindex_gui -[ 49%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 49%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 49%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 49%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/simple_msalign_reader.cpp.o +[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +[ 55%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 55%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 55%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 55%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 49%] Building CXX object CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o +[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -[ 51%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 51%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp +[ 55%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 55%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 55%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/console/topmg_process.cpp:25: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 51%] Building CXX object CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 51%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include 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CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 51%] Building CXX object CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 51%] Building CXX object CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o -MF 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 53%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 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CMakeFiles/topmerge.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 56%] Building CXX object CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 53%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 54%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp -[ 54%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o 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CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 54%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -[ 54%] Building CXX object CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 56%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 56%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp +[ 56%] Building CXX object CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:31: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 54%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/activation_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/activation_base.cpp +[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, @@ -10539,14 +10656,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 55%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o +[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 57%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 57%] Building CXX object CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 55%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 55%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp -[ 55%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, @@ -10555,34 +10672,46 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 55%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 55%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 56%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp +[ 57%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 56%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/simple_msalign_reader.cpp.o -[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 57%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/residue_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp +[ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 57%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 57%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, @@ -10591,123 +10720,113 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 56%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 57%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 56%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid.cpp -[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 56%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 56%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 56%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp +[ 57%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 56%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 56%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 56%] Building CXX object CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmerge.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 56%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topfd_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp -[ 56%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 56%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] + 93 | thread_ptr_vec_.empty(); + | ~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 57%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 57%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp -[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 57%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 57%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 57%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 57%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 57%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp +[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 57%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 57%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:31: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 57%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/amino_acid_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/amino_acid_base.cpp +[ 57%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 57%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 57%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp [ 58%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp +[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -10716,53 +10835,75 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 58%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp -[ 58%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 58%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 58%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/base_data.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/base_data.cpp +[ 58%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 58%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp +[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] + 93 | thread_ptr_vec_.empty(); + | ~~~~~~~~~~~~~~~~~~~~~^~ +In file included from /usr/include/c++/15/vector:68, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: +/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here + 1223 | empty() const _GLIBCXX_NOEXCEPT + | ^~~~~ +[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/boost/filesystem.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] + 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); + | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here + 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 + | ^~~~~~~~~ +[ 59%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:31: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 58%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 59%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 59%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: @@ -10770,52 +10911,33 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 58%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] - 93 | thread_ptr_vec_.empty(); - | ~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/15/vector:68, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: -/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here - 1223 | empty() const _GLIBCXX_NOEXCEPT - | ^~~~~ -[ 58%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 58%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 58%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ion_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ion_type_base.cpp -[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 59%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 59%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 59%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod.cpp +[ 59%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 59%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -10824,25 +10946,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o -MF 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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CMakeFiles/topdiff_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore 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CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); @@ -10858,25 +10963,37 @@ /usr/include/boost/filesystem/operations.hpp:473:13: note: declared here 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 | ^~~~~~~~~ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 59%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 59%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 59%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 59%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 59%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 59%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/toppic_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 59%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 59%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -10885,67 +11002,154 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 59%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp +[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 60%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o +[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ [ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/mod_util.cpp -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o +[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp +[ 61%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 61%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp -[ 60%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp -[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 61%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 61%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp +[ 61%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 62%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp +[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp +[ 62%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -10954,33 +11158,36 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss.cpp +[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 63%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 63%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -10989,44 +11196,34 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 63%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o +[ 63%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 63%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +[ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -[ 60%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -[ 60%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/neutral_loss_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/neutral_loss_base.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 64%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -11035,60 +11232,59 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp -[ 60%] Building CXX object CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp -[ 60%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 60%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 60%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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+[ 64%] Building CXX object CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 64%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 64%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 64%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp +[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 64%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 64%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 60%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod.cpp -[ 60%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 60%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src 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CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 61%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_base.cpp -[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -11097,38 +11293,32 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp -[ 61%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 61%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 61%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 61%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 61%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 61%] Building CXX object CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp +[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp +[ 64%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 64%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -11137,53 +11327,54 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 61%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 62%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/prot_mod_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/prot_mod_util.cpp -[ 62%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 62%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 62%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp -[ 62%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 64%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o +[ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: +[ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o +[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm.cpp -[ 62%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp +[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 64%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 62%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 64%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 65%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -11192,84 +11383,83 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_base.cpp -[ 62%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 62%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 62%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 62%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 62%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 62%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp +[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 65%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 65%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 62%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 62%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/ptm_util.cpp -[ 62%] Building CXX object CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 62%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o +[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 62%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, @@ -11279,17 +11469,15 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp -[ 63%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -11301,8 +11489,8 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 65%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -11314,54 +11502,51 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 63%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 63%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 63%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp +[ 65%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:31: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 63%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp -[ 63%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_base.cpp -[ 63%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 63%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 63%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 63%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 63%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 64%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 65%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_freq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_freq.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -11370,38 +11555,60 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 64%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 64%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp -[ 64%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/residue_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/residue_util.cpp -[ 64%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 64%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o +[ 65%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 65%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 66%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 66%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o -[ 66%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 65%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 65%] Building CXX object CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 65%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 65%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 65%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -11413,6 +11620,45 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 65%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 65%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 65%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 66%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 68%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -11421,66 +11667,78 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type.cpp -[ 66%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 66%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 66%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 66%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/support_peak_type_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/support_peak_type_base.cpp -[ 66%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 66%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 66%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 66%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 154 | fai_build(db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 202 | fai_build(new_db_file_name.c_str()); + | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 66%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 66%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 66%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 66%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc.cpp +[ 68%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -11489,49 +11747,51 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 66%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp -[ 67%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp +[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_base.cpp -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o +[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 67%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp -[ 67%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 68%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 67%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: @@ -11539,81 +11799,82 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/base/trunc_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/base/trunc_util.cpp -[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 67%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp -[ 67%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/thread/simple_thread_pool.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp +[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 67%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp +[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 68%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp: In member function 'void toppic::SimpleThreadPool::ShutDown()': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:93:24: warning: ignoring return value of 'bool std::vector<_Tp, _Alloc>::empty() const [with _Tp = std::shared_ptr; _Alloc = std::allocator >]', declared with attribute 'nodiscard' [-Wunused-result] - 93 | thread_ptr_vec_.empty(); - | ~~~~~~~~~~~~~~~~~~~~~^~ -In file included from /usr/include/c++/15/vector:68, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/thread/simple_thread_pool.cpp:16: -/usr/include/c++/15/bits/stl_vector.h:1223:7: note: declared here - 1223 | empty() const _GLIBCXX_NOEXCEPT - | ^~~~~ -[ 67%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -11622,58 +11883,81 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/spectrum_set.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 67%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp -[ 67%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 67%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp +[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 68%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -11682,76 +11966,51 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 67%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 67%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 67%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/file_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp +[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp: In function 'void toppic::file_util::copyFile(const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:165:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 165 | fs::copy_file(from_path, to_path, fs::copy_option::overwrite_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/boost/filesystem.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:24: -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/file_util.cpp:168:18: warning: 'bool boost::filesystem::copy_file(const path&, const path&, copy_option::enum_type)' is deprecated: Use copy_options instead of copy_option [-Wdeprecated-declarations] - 168 | fs::copy_file(from_path, to_path, fs::copy_option::fail_if_exists); - | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/boost/filesystem/operations.hpp:473:13: note: declared here - 473 | inline bool copy_file(path const& from, path const& to, // See ticket #2925 - | ^~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp +[ 68%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp +[ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -11760,16 +12019,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, @@ -11778,88 +12033,80 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 69%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 69%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 69%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/logger.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/logger.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/mem_check.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/mem_check.cpp +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 69%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 69%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp -[ 68%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/str_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/str_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, @@ -11868,34 +12115,20 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 68%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp -[ 68%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 68%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 69%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp +[ 69%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -11904,18 +12137,31 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 68%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 69%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 69%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 69%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -11927,36 +12173,34 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ -[ 69%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 69%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 69%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 70%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp +[ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -[ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/util/time_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/util/time_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -11966,163 +12210,149 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp [ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_document.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_document.cpp -[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_err_handler.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_err_handler.cpp -[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 70%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp [ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp -[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_impl.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_impl.cpp -[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_parser.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_parser.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_dom_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_dom_util.cpp -[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/common/xml/xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/common/xml/xml_writer.cpp +[ 70%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp +[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp +[ 70%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 70%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp -[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o +[ 70%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 70%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 70%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter.cpp -[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o +[ 70%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 71%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 70%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 70%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -12131,29 +12361,24 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/alter_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/alter_type.cpp -[ 71%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 71%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/amino_acid_replace.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 70%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 70%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 70%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +[ 70%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -12162,123 +12387,129 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/bp_spec.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/bp_spec.cpp -[ 71%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 71%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 70%] Building CXX object CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp +[ 71%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 71%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp +[ 71%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/charge_cmp.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/charge_cmp.cpp +[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 71%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 71%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 71%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/break_point.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/break_point.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o +[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_base.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_base.cpp +[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +[ 71%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 71%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 71%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/db_block.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/db_block.cpp +[ 71%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 71%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_index_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp +[ 71%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 71%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp +[ 71%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp [ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 72%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 72%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp -[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp +[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, @@ -12288,34 +12519,47 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 72%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -12325,52 +12569,48 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp +[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -12379,134 +12619,150 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o +[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp +[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp -[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 73%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp +[ 73%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp +[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 73%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp -[ 72%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 72%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_sub_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp +[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 73%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 72%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 72%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp -[ 72%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 72%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -12515,24 +12771,33 @@ from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 73%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp +[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/fasta_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp -[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp +[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -12543,29 +12808,21 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/local_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/local_anno.cpp +[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbSimplePreprocess(const std::string&, const std::string&)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:154:12: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 154 | fai_build(db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp: In function 'void toppic::fasta_util::dbPreprocess(const std::string&, const std::string&, bool, int, int)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_util.cpp:202:14: warning: ignoring return value of 'int fai_build(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 202 | fai_build(new_db_file_name.c_str()); - | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -12574,19 +12831,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp -[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp +[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp +[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -12595,146 +12847,87 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 73%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -[ 73%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 73%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/mass_shift.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 73%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp -[ 73%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.cpp:29: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 73%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 73%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -12744,52 +12937,47 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 73%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp +[ 75%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 73%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o +[ 75%] Building CXX object CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 75%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] @@ -12801,35 +12989,33 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, | ^~~~~~~~~~~~~~~~~~~~ +[ 76%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 76%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -12839,98 +13025,63 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 76%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o +[ 76%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.cpp:28: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 76%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 76%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 76%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -12940,100 +13091,94 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 77%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_type.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/env/real_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/real_env.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 77%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/proteoform_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.cpp:25: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp +[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -13043,76 +13188,58 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 77%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o +[ 77%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o +[ 77%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -13124,26 +13251,30 @@ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -13154,143 +13285,139 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 77%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/residue_seq.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/residue_seq.cpp -[ 74%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp +[ 77%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 74%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 77%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 77%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ +[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -MF CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/seq/seq_segment.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/seq_segment.cpp -[ 74%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 77%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 77%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp +[ 77%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o -[ 74%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/peak_tolerance.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/peak_tolerance.cpp -[ 74%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 74%] Building CXX object CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 74%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 74%] Building CXX object CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/prsm_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/prsm_para.cpp -[ 75%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 77%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 76%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -13301,92 +13428,77 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 76%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 77%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Linking CXX executable /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topfd -/usr/bin/cmake -E cmake_link_script CMakeFiles/topfd.dir/link.txt --verbose=1 -[ 77%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c 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CMakeFiles/topfd.dir/src/common/base/residue_freq.cpp.o CMakeFiles/topfd.dir/src/common/base/residue_util.cpp.o CMakeFiles/topfd.dir/src/common/base/support_peak_type.cpp.o CMakeFiles/topfd.dir/src/common/base/support_peak_type_base.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc_base.cpp.o CMakeFiles/topfd.dir/src/common/base/trunc_util.cpp.o CMakeFiles/topfd.dir/src/common/thread/simple_thread_pool.cpp.o CMakeFiles/topfd.dir/src/common/util/file_util.cpp.o CMakeFiles/topfd.dir/src/common/util/logger.cpp.o CMakeFiles/topfd.dir/src/common/util/mem_check.cpp.o CMakeFiles/topfd.dir/src/common/util/str_util.cpp.o CMakeFiles/topfd.dir/src/common/util/time_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_document.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_err_handler.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o CMakeFiles/topfd.dir/src/para/prsm_para.cpp.o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o CMakeFiles/topfd.In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: +[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 78%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 77%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 78%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp +[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Building CXX object CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/para/sp_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/para/sp_para.cpp -[ 77%] Building CXX object CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 77%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 77%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o +[ 78%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 79%] Building CXX object CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 77%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp -[ 78%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 80%] Building CXX object CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -13397,64 +13509,56 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 80%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/charge_cmp.cpp.o -MF 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CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topfd -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lboost_iostreams -lboost_chrono /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 -lpthread -lz -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topfd.dir/src/common/xml/xml_dom_err_handler.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_impl.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_parser.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_dom_util.cpp.o CMakeFiles/topfd.dir/src/common/xml/xml_writer.cpp.o CMakeFiles/topfd.dir/src/para/peak_tolerance.cpp.o CMakeFiles/topfd.dir/src/para/prsm_para.cpp.o CMakeFiles/topfd.dir/src/para/sp_para.cpp.o CMakeFiles/topfd.[ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 80%] Building CXX object CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_assign.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_assign.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 78%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp -[ 78%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -13464,13 +13568,18 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: @@ -13481,286 +13590,303 @@ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp +[ 81%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_base.cpp.o 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CMakeFiles/topfd.dir/src/ms/env/match_env_filter.cpp.o CMakeFiles/topfd.dir/src/ms/env/match_env_refine.cpp.o CMakeFiles/topfd.dir/src/ms/env/match_env_util.cpp.o CMakeFiles/topfd.dir/src/ms/env/match_env_writer.cpp.o CMakeFiles/topfd.dir/src/ms/env/prec_env.cpp.o CMakeFiles/topfd.dir/src/ms/env/real_env.cpp.o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_factory.cpp.o CMakeFiles/topfd.dir/src/ms/factory/extend_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_factory.cpp.o CMakeFiles/topfd.dir/src/ms/factory/prm_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/factory/prm_peak_factory.cpp.o CMakeFiles/topfd.dir/src/ms/factory/spectrum_set_factory.cpp.o CMakeFiles/topfd.dir/src/ms/feature/feature_merge.cpp.o CMakeFiles/topfd.dir/src/ms/feature/frac_feature.cpp.o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_cluster.cpp.o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_reader.cpp.o CMakeFiles/topfd.dir/src/ms/feature/frac_feature_writer.cpp.o CMakeFiles/topfd.dir/src/ms/feature/frac_xml_feature_reader.cpp.o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster.cpp.o CMakeFiles/topfd.dir/src/ms/feature/peak_cluster_score.cpp.o CMakeFiles/topfd.dir/src/ms/feature/sample_feature.cpp.o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_reader.cpp.o CMakeFiles/topfd.dir/src/ms/feature/sample_feature_writer.cpp.o CMakeFiles/topfd.dir/src/ms/feature/savitzky_golay.cpp.o CMakeFiles/topfd.dir/src/ms/feature/single_charge_feature.cpp.o CMakeFiles/topfd.dir/src/ms/feature/spec_feature.cpp.o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_reader.cpp.o CMakeFiles/topfd.dir/src/ms/feature/spec_feature_writer.cpp.o CMakeFiles/topfd.dir/src/ms/spec/base_peak_type.cpp.o CMakeFiles/topfd.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topfd.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/ms_header.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_frac_merge.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topfd.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topfd.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topfd.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topfd.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topfd.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topfd.dir/src/ms/spec/theo_peak.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topfd -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lboost_iostreams -lboost_chrono /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 -lpthread -lz +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 81%] Built target topfd +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp -[ 78%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 78%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp +[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_detect.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_detect.cpp -[ 78%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp -[ 78%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp -[ 78%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 78%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 81%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 81%] Linking CXX executable /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topdiff +/usr/bin/cmake -E cmake_link_script CMakeFiles/topdiff.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=$ORIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 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CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topdiff.dir/src/prsm/expected_value.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/spectrum_set_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 78%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 78%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_filter.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 79%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 79%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 81%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +prsm_prob.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topdiff -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lpthread -lz -lhts +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 81%] Built target topdiff +[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp -[ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_para.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_para.cpp -[ 80%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 81%] Building CXX object CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_peak_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_peak_pair.cpp +[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp +[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp +[ 81%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 80%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/env_rescore.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/env_rescore.cpp -[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 80%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o +[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 82%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 80%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/envelope.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/envelope.cpp -[ 80%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 80%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp -[ 81%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 81%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef 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CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topdiff.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topdiff.dir/src/prsm/expected_value.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topdiff.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 81%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -13769,8 +13895,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 81%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -13779,47 +13905,36 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 81%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env.cpp.o 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CMakeFiles/topdiff.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_prsm_reader.cpp.o CMakeFiles/topdiff.dir/src/merge/feature_sample_merge.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topdiff -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 81%] Built target topdiff -[ 81%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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CMakeFiles/topconvert.dir/src/ms/factory/prm_peak_factory.cpp.o CMakeFiles/topconvert.dir/src/ms/factory/spectrum_set_factory.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/feature_merge.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_cluster.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_reader.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/frac_feature_writer.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/frac_xml_feature_reader.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/peak_cluster_score.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_reader.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/sample_feature_writer.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/savitzky_golay.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/single_charge_feature.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_reader.cpp.o CMakeFiles/topconvert.dir/src/ms/feature/spec_feature_writer.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/base_peak_type.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/ms_header.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/msalign_frac_merge.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/peak.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topconvert.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topconvert.dir/src/prsm/expected_value.cpp.o CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topconvert.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/t[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp +[ 82%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 81%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -13829,26 +13944,10 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 81%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_filter.cpp -[ 81%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp -[ 82%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp [ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -13857,53 +13956,43 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 82%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_refine.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_refine.cpp -[ 83%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +opconvert.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topconvert -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 -lpthread -lz -lhts +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp +[ 82%] Built target topconvert +[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_util.cpp -[ 83%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 83%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -13912,26 +14001,38 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -13940,34 +14041,20 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp -[ 83%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 82%] Building CXX object CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -13980,64 +14067,56 @@ from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/match_env_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/match_env_writer.cpp -[ 83%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp -[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -14046,133 +14125,105 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/env/prec_env.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/env/prec_env.cpp -[ 84%] Building CXX object CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topconvert_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 82%] Building CXX object CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 82%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/env/real_env.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o +[ 82%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_factory.cpp +[ 82%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp +[ 82%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -opconvert.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topconvert.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topconvert.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topconvert.dir/src/prsm/theo_peak_util.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topconvert -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 84%] Built target topconvert -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o 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CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o +[ 82%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 82%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp +[ 83%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp +[ 83%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, @@ -14184,42 +14235,53 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 83%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 83%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/extend_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/extend_ms_util.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +[ 83%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[ 83%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp +[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp [ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: @@ -14227,14 +14289,20 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -14243,75 +14311,54 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_factory.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_ms_util.cpp -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/factory/prm_peak_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/factory/prm_peak_factory.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 85%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp +[ 85%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_reader.cpp.o +/usr/bin/c++ 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp -[ 84%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 85%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp +[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp +[ 85%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 84%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o +[ 85%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, @@ -14322,55 +14369,37 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 84%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 84%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/factory/spectrum_set_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topdiff_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_thread -lboost_iostreams -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 84%] Built target topdiff_gui -[ 85%] Building CXX object CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 85%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp -[ 85%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp -[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp -[ 85%] Building CXX object CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp +[ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -14381,50 +14410,41 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp -[ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/feature_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/feature_merge.cpp -[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o +[ 86%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 85%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp -[ 85%] Building CXX object CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -isystem /usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -MF CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o.d -o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp -[ 85%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp +[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o 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CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_reader.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/sample_feature_writer.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/savitzky_golay.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/single_charge_feature.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_reader.cpp.o CMakeFiles/topfd_gui.dir/src/ms/feature/spec_feature_writer.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/base_peak_type.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/ms_header.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topfd_gui.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topfd_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topfd_gui.dir/topfd_gui_autogen/HZKSH7CGSX/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topfd_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_filesystem -lboost_system -lboost_tIn file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp -[ 85%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -14435,30 +14455,25 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature.cpp -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 86%] Building CXX object CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp +[ 86%] Building CXX object CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -14468,12 +14483,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp -[ 85%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp -[ 85%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: @@ -14481,39 +14492,64 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp +[ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp +[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 85%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_cluster.cpp -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 86%] Linking CXX executable 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+/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 86%] Building CXX object CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp +[ 86%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, @@ -14548,260 +14587,279 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_reader.cpp -hread -lboost_iostreams -lboost_chrono /usr/lib/aarch64-linux-gnu/libpwizlite.so.3.0.8 -lpthread -lz -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 86%] Built target topfd_gui -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp +[ 87%] Building CXX object CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp +[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_feature_writer.cpp +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp +[ 87%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/frac_xml_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/frac_xml_feature_reader.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o +[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 87%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/extend_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp +[ 87%] Building CXX object CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 87%] Building CXX object CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/peak_cluster_score.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/peak_cluster_score.cpp -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp +[ 87%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o -MF 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CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp +[ 88%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o 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CMakeFiles/topmerge.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topmerge.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_file_list.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_prsm.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_ptm.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_residue.cpp.o CMakeFiles/topmerge.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/topmerge.dir/src/visual/json_transformer.cpp.o CMakeFiles/topmerge.dir/src/visual/xml_generator.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topmerge -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[ 88%] Built target topmerge +[ 88%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature.cpp -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_reader.cpp +[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp +[ 88%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp +[ 88%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 86%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp +[ 88%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o /usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 86%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/sample_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/sample_feature_writer.cpp -[ 86%] Building CXX object CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 88%] Building CXX object CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 88%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? @@ -14814,25 +14872,26 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/savitzky_golay.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/savitzky_golay.cpp -[ 87%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/single_charge_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/single_charge_feature.cpp -[ 87%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF 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-I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Linking CXX executable 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CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peak[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp +[ 88%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp +[ 88%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 88%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ [ 88%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/index/zero_ptm_index.cpp.o 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-Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, @@ -14870,876 +14941,814 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -.o CMakeFiles/topmerge.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topmerge.dir/src/prsm/prsm_top_selector.cpp.o 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-I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature.cpp -[ 88%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp +[ 89%] Built target topmerge_gui +[ 89%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 89%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp +[ 90%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +[ 90%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 88%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 88%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp -[ 88%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_reader.cpp -[ 88%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp -[ 89%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp +[ 90%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp -[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/feature/spec_feature_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/feature/spec_feature_writer.cpp +[ 90%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp +[ 90%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp -[ 90%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 90%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp -[ 90%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp -[ 90%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp -[ 90%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp +[ 90%] Building CXX object CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp:27: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 90%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/base_peak_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/base_peak_type.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/baseline_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/baseline_util.cpp -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_json_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_json_merge.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_ms_util.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp:27: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/deconv_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/deconv_peak.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/env_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/env_peak.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/extend_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/extend_peak.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/ms_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/ms_header.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_frac_merge.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_thread_merge.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp +[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp:30: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_util.cpp -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp +[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp +[ 91%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp -[ 91%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/msalign_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/msalign_writer.cpp +[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/one_ptm_filter_mng.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp +[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 91%] Building CXX object CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o -MF CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o.d -o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak.cpp -[ 91%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/peak_util.cpp -[ 91%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp -[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp +[ 92%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp:31: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp +[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp +[ 92%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_fdr.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/prm_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/prm_peak.cpp -[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_group.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_group.cpp -[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/raw_ms_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/raw_ms_util.cpp -[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp -[ 92%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp +[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp:30: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/rm_break_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/rm_break_type.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/simple_msalign_reader.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by 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-I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp +[ 92%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c 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CMakeFiles/topmerge_gui.dir/src/ms/spec/baseline_util.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_json_merge.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_ms_util.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/deconv_peak.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/env_peak.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/extend_peak.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/ms_header.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_frac_merge.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/support_peakIn file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, +[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.hpp:25, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/spectrum_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/spectrum_set.cpp -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/15/algorithm:63, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: -/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here - 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here - 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp +[ 92%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp +[ 92%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/support_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/support_peak.cpp +[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp +[ 92%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:37: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -.cpp.o CMakeFiles/topmerge_gui.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topmerge_gui.dir/src/stat/local/local_mng.cpp.o CMakeFiles/topmerge_gui.dir/src/stat/local/local_processor.cpp.o CMakeFiles/topmerge_gui.dir/src/stat/local/local_proteoform.cpp.o CMakeFiles/topmerge_gui.dir/src/stat/local/local_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/expected_value.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_str_merge.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_table_writer.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_top_selector.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/search_fasta_match.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_reader.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o CMakeFiles/topmerge_gui.dir/src/prsm/theo_peak_util.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_file_list.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_prsm.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_residue.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/json_transformer.cpp.o CMakeFiles/topmerge_gui.dir/src/visual/xml_generator.cpp.o CMakeFiles/topmerge_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/topmerge_gui.dir/topmerge_gui_autogen/FNASZ5VCWY/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topmerge_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_serialization -lboost_system -lboost_thread -lboost_iostreams -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 93%] Built target topmerge_gui -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -MF CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/ms/spec/theo_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/ms/spec/theo_peak.cpp -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_mass_table_util.cpp -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/expected_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/expected_value.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] + 51 | bool write_multiple_matches_; + | ^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] + 47 | std::string output_file_ext_; + | ^~~~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] + 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, + | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair.cpp -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +[ 92%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 92%] Building CXX object CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp:31: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/peak_ion_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 92%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp +[ 92%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp +[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 93%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_algo.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_algo.cpp -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp +[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp +[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +[ 93%] Building CXX object CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[ 93%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cluster.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 93%] Building CXX object CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp -[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_coverage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp -[ 93%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp +[ 93%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_coverage.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 93%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp +[ 94%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/tdgf_mng.cpp -[ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_cutoff_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp -[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp +[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_cutoff_selector.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp -[ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_dia_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp +[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/dp_pair.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.hpp:25, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_dia_selector.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/dp_pair.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 94%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:31: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/15/algorithm:63, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: +/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here + 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here + 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp -[ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_fdr.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_fdr.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:37: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 94%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp +[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_mass_table_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp -[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp +[ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/dist.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_search_processor.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 94%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/one_ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/one_ptm_slow_match.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 94%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp -[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, @@ -15748,6 +15757,9 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_prob_value_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp +[ 94%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -15757,64 +15769,52 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp -[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_feature_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_feature_cluster.cpp:22: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] - 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? - 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_form_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp -[ 95%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_form_filter.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +[ 94%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 94%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/path_type.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/path_type.cpp +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +[ 94%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_anno.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp:27: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_match_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp -[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp +[ 94%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 94%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -15824,155 +15824,166 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp +[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp +[ 95%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_top_selector.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp +[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_prob.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp -[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_prob.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:23: -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp: In constructor 'toppic::PrsmMatchTableWriter::PrsmMatchTableWriter(toppic::PrsmParaPtr, std::string, const std::string&, const std::string&, bool)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:51:8: warning: 'toppic::PrsmMatchTableWriter::write_multiple_matches_' will be initialized after [-Wreorder] - 51 | bool write_multiple_matches_; - | ^~~~~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.hpp:47:15: warning: 'std::string toppic::PrsmMatchTableWriter::output_file_ext_' [-Wreorder] - 47 | std::string output_file_ext_; - | ^~~~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_match_table_writer.cpp:27:1: warning: when initialized here [-Wreorder] - 27 | PrsmMatchTableWriter::PrsmMatchTableWriter(PrsmParaPtr prsm_para_ptr, - | ^~~~~~~~~~~~~~~~~~~~ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_reader_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp -[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp -[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp -[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ps_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp +[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_sample_merge.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ps_align.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/prob_peak.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/prob_peak.cpp +[ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/oneptmsearch/ptm_search_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/oneptmsearch/ptm_search_mng.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 95%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +[ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/comp_shift_low_mem.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/comp_shift_low_mem.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/tdgf_mng.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_simple_cluster.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp +[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp +[ 95%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp +[ 95%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader_util.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_simple_cluster.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_processor.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/tdgf_mng.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_stat.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp +[ 95%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp +[ 95%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_stat.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp +[ 96%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_search_slow_filter.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp +[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp +[ 96%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, @@ -15982,599 +15993,611 @@ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_str_merge.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp:30: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp +[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/ptmsearch/ptm_slow_match.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_table_writer.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp +[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_proteoform.cpp.o -MF 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'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_top_selector.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu 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CMakeFiles/topmg.dir/src/ms/spec/msalign_thread_merge.cpp.o CMakeFiles/topmg.dir/src/ms/spec/msalign_util.cpp.o CMakeFiles/topmg.dir/src/ms/spec/msalign_writer.cpp.o CMakeFiles/topmg.dir/src/ms/spec/peak.cpp.o CMakeFiles/topmg.dir/src/ms/spec/peak_util.cpp.o CMakeFiles/topmg.dir/src/ms/spec/prm_peak.cpp.o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_group.cpp.o CMakeFiles/topmg.dir/src/ms/spec/raw_ms_util.cpp.o CMakeFiles/topmg.dir/src/ms/spec/rm_break_type.cpp.o CMakeFiles/topmg.dir/src/ms/spec/simple_msalign_reader.cpp.o CMakeFiles/topmg.dir/src/ms/spec/spectrum_set.cpp.o CMakeFiles/topmg.dir/src/ms/spec/support_peak.cpp.o CMakeFiles/topmg.dir/src/ms/spec/theo_peak.cpp.o CMakeFiles/topmg.dir/src/prsm/expected_value.cpp.o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair.cpp.o CMakeFiles/topmg.dir/src/prsm/peak_ion_pair_util.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_algo.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_cluster.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_coverage.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_cutoff_selector.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_dia_selector.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_fdr.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topmg.diIn file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_top_selector.cpp:18: +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp +[ 96%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_match.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp +In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] + 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? + 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp:31: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 96%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp +[ 96%] Building CXX object CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp -r/src/prsm/prsm_str.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_str_merge.cpp.o 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CMakeFiles/topmg.dir/src/search/diag/diag_header.cpp.o CMakeFiles/topmg.dir/src/search/diag/diag_header_util.cpp.o CMakeFiles/topmg.dir/src/search/diag/diag_pair_util.cpp.o CMakeFiles/topmg.dir/src/search/diag/diagonal_util.cpp.o CMakeFiles/topmg.dir/src/search/graph/dist.cpp.o CMakeFiles/topmg.dir/src/search/graph/proteo_anno.cpp.o CMakeFiles/topmg.dir/src/search/graph/proteo_graph.cpp.o CMakeFiles/topmg.dir/src/search/graph/proteo_graph_reader.cpp.o CMakeFiles/topmg.dir/src/search/graph/spec_graph.cpp.o CMakeFiles/topmg.dir/src/search/graph/spec_graph_reader.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_align.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_align_processor.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_dp_node.cpp.o CMakeFiles/topmg.dir/src/search/graphalign/graph_post_processor.cpp.o CMakeFiles/topmg.dir/src/stat/count/count_test_num.cpp.o CMakeFiles/topmg.dir/src/stat/count/count_util.cpp.o CMakeFiles/topmg.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o CMakeFiles/topmg.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o CMakeFiles/topmg.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/topmg.dir/src/visual/anno_file_list.cpp.o CMakeFiles/topmg.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/topmg.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/topmg.dir/src/visual/anno_prsm.cpp.o CMakeFiles/topmg.dir/src/visual/anno_ptm.cpp.o CMakeFiles/topmg.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/topmg.dir/src/visual/anno_residue.cpp.o CMakeFiles/topmg.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/topmg.dir/src/visual/json_transformer.cpp.o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/topmg -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts +[ 96%] Building CXX object CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 97%] Built target topmg -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp +[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp +[ 96%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/search_fasta_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp +[ 96%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp +[ 96%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/search_fasta_match.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_fast_search.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 96%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[ 96%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_search_processor.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.hpp:25, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/c++/15/algorithm:63, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: +/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here + 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ +/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] + 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); + | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here + 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) + | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/zeroptmsearch/zero_ptm_util.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_mass_table_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:37: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_str_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_str_merge.cpp:20: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -MF CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o.d -o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp -[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_table_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_table_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/diag/diag_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/diag_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/index/one_ptm_index.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/index/zero_ptm_index.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/diag_index.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match.cpp +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/diag/diag_filter_processor.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_factory.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/zero_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/index/one_ptm_index.cpp:24: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_set.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_factory.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_set.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/massmatch/mass_match_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/mass_match_util.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/massmatch/prot_candidate.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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-c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/massmatch/prot_candidate.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/diag_filter_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/diag_filter_mng.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/mng/index_file_name.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/index_file_name.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/zero_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 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/build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/mng/zero_ptm_filter_mng.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/mng/one_ptm_filter_mng.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 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CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/toppic -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 98%] Built target toppic -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/oneptm/one_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext 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CMakeFiles/topmg.dir/src/prsm/prsm_feature_cluster.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_form_filter.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_match_table_writer.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_prob.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_reader.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_reader_util.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_sample_merge.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_simple_cluster.cpp.o CMakeFiles/topmg.dir/src/prsm/prsm_stat.cpp.o CMakeFiles/topmg.di[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/simple_prsm_xml_writer_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/oneptm/one_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/filter/zeroptm/zero_ptm_filter_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp +[ 97%] Building CXX object CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/prsm/theo_peak_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm.hpp:19, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/simple_prsm_xml_writer_util.cpp:16: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/filter/zeroptm/zero_ptm_filter_processor.cpp:22: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.cpp:19: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp +[ 97%] Building CXX object CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.cpp:16: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_header_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diag_pair_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp +[ 97%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp +[ 97%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_header_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_prob_value_array.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_array.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diag_pair_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.hpp:23, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp:18: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/diag/diagonal_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp +[ 98%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/diag/diagonal_util.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/comp_pvalue_lookup_table.cpp:21: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 98%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/dist.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include 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-D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm.cpp +[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.cpp:27: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp +[ 99%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp +[ 99%] Building CXX object CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/evalue_processor.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/proteo_graph_reader.cpp.o.d -o 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-I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o -MF 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-Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_prsm_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_prsm_reader.cpp +[ 99%] Building CXX object CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_anno.hpp:28, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/proteo_graph_reader.cpp:20: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/prob_peak.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm_position.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/toppic_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts -make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' -[ 99%] Built target toppic_gui -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graph/spec_graph_reader.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graph/spec_graph_reader.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp +[ 99%] Building CXX object CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/merge/feature_sample_merge.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp +[ 99%] Building CXX object CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topdiff_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform_factory.hpp:19, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align.cpp:21: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/merge/feature_sample_merge.cpp:23: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_align_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_dp_node.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_dp_node.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/search/graphalign/graph_post_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp +[ 99%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/tdgf/tdgf_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/tdgf/tdgf_mng.cpp +[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[ 99%] Building CXX object CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -MF CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o.d -o CMakeFiles/topdiff_gui.dir/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topdiff_gui_autogen/4YKSSMFELI/qrc_icon.cpp +[ 99%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_mng.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_mng.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_seq.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_sub_util.hpp:18, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_align_processor.cpp:30: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/search/graphalign/graph_post_processor.cpp:31: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_util.hpp:18, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp:17: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_test_num.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp +[ 99%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_reader.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_test_num.cpp:19: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm_reader.hpp:21, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_processor.cpp:31: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/count/count_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp +[100%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[100%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/count/count_util.cpp:18: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/comp_pvalue_mcmc.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_dpr_processor.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/stat/local/local_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.hpp:25, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:23: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_proteoform.cpp:24: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/stat/mcmc/mcmc_mass_table_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_mass_table_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/theo_peak_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/mcmc_dpr_processor.cpp:37: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_cleavage.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_cleavage.cpp:15: + from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/local/local_util.cpp:22: /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:15: warning: header guard 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_' followed by '#define' of a different macro [-Wheader-guard] 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp: In member function 'toppic::ResiduePtrVec toppic::CompPValueMCMC::randomTrans(toppic::ResiduePtrVec)': -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:77:22: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator*, vector > >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 77 | std::random_shuffle(ori_res.begin(), ori_res.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/c++/15/algorithm:63, - from /build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:17: -/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here - 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -/build/reproducible-path/toppic-1.5.3+dfsg1/src/stat/mcmc/comp_pvalue_mcmc.cpp:86:24: warning: 'void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator >]' is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations] - 86 | std::random_shuffle(res_seq.begin(), res_seq.end()); - | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/usr/include/c++/15/bits/stl_algo.h:4537:5: note: declared here - 4537 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last) - | ^~~~~~~~~~~~~~ -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_file_list.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_file_list.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_mass_shift.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_mass_shift.cpp +[100%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp +[100%] Building CXX object CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -MF CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o.d -o CMakeFiles/topmg_gui.dir/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/OBJ2MOUSMQ/qrc_icon.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_proteoform.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_proteoform.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -16584,8 +16607,8 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_prsm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_prsm.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/peak_ion_pair_util.hpp:20, @@ -16594,12 +16617,14 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_ptm_position.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_ptm_position.cpp -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_residue.cpp.o -/usr/bin/c++ 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CMakeFiles/topdiff_gui.dir/src/prsm/expected_value.cpp.o CMakeFiles/topdiff_[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_residue.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_residue.hpp:20, @@ -16608,12 +16633,6 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[ 99%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/anno_xml_util.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/anno_xml_util.cpp -[100%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp -[100%] Building CXX object CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/topmg_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/proteoform.hpp:21, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/prsm/prsm.hpp:21, @@ -16623,6 +16642,12 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/json_transformer.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/json_transformer.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o -MF CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/visual/xml_generator.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp +[100%] Building CXX object CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o +/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/toppic_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC -DTOPPIC_LINUX -O3 -DNDEBUG -MD -MT CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o -MF CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o.d -o CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o -c /build/reproducible-path/toppic-1.5.3+dfsg1/src/gui/util/run_exe.cpp In file included from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_seq.hpp:23, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/fasta_index_reader.hpp:22, from /build/reproducible-path/toppic-1.5.3+dfsg1/src/visual/xml_generator.cpp:24: @@ -16630,20 +16655,31 @@ 15 | #ifndef TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_ /build/reproducible-path/toppic-1.5.3+dfsg1/src/seq/amino_acid_replace.hpp:16: note: 'TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_' is defined here; did you mean 'TOPPIC_SEQ_AMINO_ACID_REPLACE_HPP_'? 16 | #define TOPPIC_SEQ_AMICO_ACID_REPLACE_HPP_ -[100%] Building CXX object CMakeFiles/topmg_gui.dir/src/gui/util/run_exe.cpp.o -/usr/bin/c++ -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu -I/build/reproducible-path/toppic-1.5.3+dfsg1 -I/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/topmg_gui_autogen/include -I/build/reproducible-path/toppic-1.5.3+dfsg1/src -I/build/reproducible-path/toppic-1.5.3+dfsg1/ext -I/usr/include/aarch64-linux-gnu/qt5 -I/usr/include/aarch64-linux-gnu/qt5/QtWidgets -I/usr/include/aarch64-linux-gnu/qt5/QtGui -I/usr/include/aarch64-linux-gnu/qt5/QtCore -I/usr/lib/aarch64-linux-gnu/qt5/mkspecs/linux-g++ -I/usr/include/pwizlite -g -O2 -ffile-prefix-map=/build/reproducible-path/toppic-1.5.3+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-unknown-pragmas -std=c++14 -Wl,-rpath=RIGIN,--disable-new-dtags -O3 -DWITHOUT_MZ5 -fPIC 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CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_processor.cpp.o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_search_slow_filter.cpp.o CMakeFiles/toppic_gui.dir/src/search/ptmsearch/ptm_slow_match.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_match.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_fast_search.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_search_processor.cpp.o CMakeFiles/toppic_gui.dir/src/search/zeroptmsearch/zero_ptm_util.cpp.o CMakeFiles/toppic_gui.dir/src/stat/count/count_test_num.cpp.o CMakeFiles/toppic_gui.dir/src/stat/count/count_util.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_prob_value_array.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_array.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/comp_pvalue_lookup_table.cpp.o CMakeFiles/toppic_gui.dir/src/stat/tdgf/evalue_processor.cpp.o 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CMakeFiles/toppic_gui.dir/src/gui/util/run_exe.cpp.o CMakeFiles/toppic_gui.dir/toppic_gui_autogen/23BTPJIYMA/qrc_icon.cpp.o -o /build/reproducible-path/toppic-1.5.3+dfsg1/bin/toppic_gui -lQt5Widgets -lQt5Core -lQt5Gui -lxerces-c -lboost_program_options -lboost_filesystem -lboost_system -lboost_serialization -lboost_thread -lpthread -lz -lhts +make[3]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' +[100%] Built target toppic_gui make[2]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/toppic-1.5.3+dfsg1/obj-aarch64-linux-gnu' dh_auto_test -O--buildsystem=cmake - rm -fr -- /tmp/dh-xdg-rundir-mInDVp0a + rm -fr -- /tmp/dh-xdg-rundir-O213EnWP create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake @@ -17512,22 +17548,22 @@ Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/toppic_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/topfd_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/pwiz_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_1.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/download.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/png.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/common/spectrum_view/images/svg.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/msconvert_1.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/doc/toppic-common/images/folder_2.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_both.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png - Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_asc_disabled.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/datatables.net-dt/images/sort_desc_disabled.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_444444_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_555555_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777620_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_777777_256x240.png using File::StripNondeterminism::handlers::png + Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_cc0000_256x240.png using File::StripNondeterminism::handlers::png Normalizing debian/toppic-common/usr/share/toppic/topmsv/node_modules/jquery-ui-dist/images/ui-icons_ffffff_256x240.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=cmake cd debian/toppic @@ -17542,13 +17578,13 @@ find debian/toppic ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic-common ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/toppic/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common/usr/share/doc -type f -a -true -a ! -regex 'debian/toppic-common/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 - find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/toppic/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/toppic-common/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 + find debian/toppic/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 + find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/toppic/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x - find debian/toppic-common -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake install -m0755 -d debian/toppic/usr/lib/debug/.dwz/aarch64-linux-gnu @@ -17561,16 +17597,16 @@ chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ba/7d5de4e5103accca629ccda946f45fdda42df0.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ba/7d5de4e5103accca629ccda946f45fdda42df0.debug debian/toppic/usr/bin/toppic_gui - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e/2c8fa5b63c1157c189671071d51036939088e9.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e/2c8fa5b63c1157c189671071d51036939088e9.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e/2c8fa5b63c1157c189671071d51036939088e9.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ef objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ef/de79f025ba48da32fc7eee9471e1c0b9e2ff90.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ef/de79f025ba48da32fc7eee9471e1c0b9e2ff90.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topmg_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/ef/de79f025ba48da32fc7eee9471e1c0b9e2ff90.debug debian/toppic/usr/bin/topmg_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/toppic debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e/2c8fa5b63c1157c189671071d51036939088e9.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e/2c8fa5b63c1157c189671071d51036939088e9.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/toppic + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/9e/2c8fa5b63c1157c189671071d51036939088e9.debug debian/toppic/usr/bin/toppic install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/71 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topmg debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/71/8e45e1b7dc5bad8f609babcbcaf3016cab2792.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/71/8e45e1b7dc5bad8f609babcbcaf3016cab2792.debug @@ -17591,16 +17627,16 @@ chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b6/f7cf280205575318d1e003ae550cbf77f476f1.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topconvert objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/b6/f7cf280205575318d1e003ae550cbf77f476f1.debug debian/toppic/usr/bin/topconvert - install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85 - objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85/a1725b6757ec412cbe65757f25554c4c2af296.debug - chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85/a1725b6757ec412cbe65757f25554c4c2af296.debug - strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui - objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85/a1725b6757ec412cbe65757f25554c4c2af296.debug debian/toppic/usr/bin/topdiff_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5e objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5e/95e1d13650dbe1078de651ae13b83fcfb99bba.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5e/95e1d13650dbe1078de651ae13b83fcfb99bba.debug strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topfd_gui objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/5e/95e1d13650dbe1078de651ae13b83fcfb99bba.debug debian/toppic/usr/bin/topfd_gui + install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85 + objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topdiff_gui debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85/a1725b6757ec412cbe65757f25554c4c2af296.debug + chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85/a1725b6757ec412cbe65757f25554c4c2af296.debug + strip --remove-section=.comment --remove-section=.note debian/toppic/usr/bin/topdiff_gui + objcopy --add-gnu-debuglink debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/85/a1725b6757ec412cbe65757f25554c4c2af296.debug debian/toppic/usr/bin/topdiff_gui install -m0755 -d debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3 objcopy --only-keep-debug --compress-debug-sections debian/toppic/usr/bin/topfd debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/66c1407f51091c29f4db7b560bc158ea84a04a.debug chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/usr/lib/debug/.build-id/a3/66c1407f51091c29f4db7b560bc158ea84a04a.debug @@ -17632,7 +17668,7 @@ rm -f debian/toppic/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=cmake install -m0755 -d debian/toppic/DEBIAN - dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topindex + dpkg-shlibdeps -Tdebian/toppic.substvars debian/toppic/usr/bin/toppic_gui debian/toppic/usr/bin/topmg_gui debian/toppic/usr/bin/toppic debian/toppic/usr/bin/topmg debian/toppic/usr/bin/topmerge_gui debian/toppic/usr/bin/topmerge debian/toppic/usr/bin/topconvert debian/toppic/usr/bin/topfd_gui debian/toppic/usr/bin/topdiff_gui debian/toppic/usr/bin/topfd debian/toppic/usr/bin/topdiff debian/toppic/usr/bin/topindex_gui debian/toppic/usr/bin/topindex dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -17641,22 +17677,22 @@ install -m0755 -d debian/toppic/DEBIAN install -m0755 -d debian/toppic-common/DEBIAN dh_gencontrol -O--buildsystem=cmake + install -m0755 -d debian/toppic-common/DEBIAN + echo misc:Depends= >> debian/toppic-common.substvars + echo misc:Pre-Depends= >> debian/toppic-common.substvars + dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common install -m0755 -d debian/toppic/DEBIAN echo misc:Depends= >> debian/toppic.substvars echo misc:Pre-Depends= >> debian/toppic.substvars install -m0755 -d debian/.debhelper/toppic/dbgsym-root/DEBIAN dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/.debhelper/toppic/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=toppic-dbgsym "-DDepends=toppic (= \${binary:Version})" "-DDescription=debug symbols for toppic" "-DBuild-Ids=0ac41c8b839c8ff9e98b4bf008daad673be7b130 32a3349ab5e2da07f45873996c06e490cb682d65 5e95e1d13650dbe1078de651ae13b83fcfb99bba 718e45e1b7dc5bad8f609babcbcaf3016cab2792 85a1725b6757ec412cbe65757f25554c4c2af296 9a9d0a0a3e1d4f55d3394c19e31c2a1ead7ab24f 9e2c8fa5b63c1157c189671071d51036939088e9 a366c1407f51091c29f4db7b560bc158ea84a04a b6f7cf280205575318d1e003ae550cbf77f476f1 ba7d5de4e5103accca629ccda946f45fdda42df0 d414a952d67e75d10fd116b57c6011c2b89fc0b2 efde79f025ba48da32fc7eee9471e1c0b9e2ff90 faf0f146952df43cd7cc95542a47b63c63cb5d22" -DSection=debug -UMulti-Arch -UReplaces -UBreaks - install -m0755 -d debian/toppic-common/DEBIAN - echo misc:Depends= >> debian/toppic-common.substvars - echo misc:Pre-Depends= >> debian/toppic-common.substvars - dpkg-gencontrol -ptoppic-common -ldebian/changelog -Tdebian/toppic-common.substvars -cdebian/control -Pdebian/toppic-common chmod 0644 -- debian/toppic-common/DEBIAN/control chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/control dpkg-gencontrol -ptoppic -ldebian/changelog -Tdebian/toppic.substvars -cdebian/control -Pdebian/toppic chmod 0644 -- debian/toppic/DEBIAN/control dh_md5sums -O--buildsystem=cmake - install -m0755 -d debian/toppic-common/DEBIAN install -m0755 -d debian/toppic/DEBIAN + install -m0755 -d debian/toppic-common/DEBIAN cd debian/toppic >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/toppic-common >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/toppic/DEBIAN/md5sums @@ -17665,12 +17701,12 @@ chmod 0644 -- debian/toppic-common/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/toppic/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=cmake - dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/.debhelper/toppic/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/toppic .. dpkg-deb --root-owner-group --build debian/toppic-common .. -dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_arm64.deb'. -dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_arm64.deb'. dpkg-deb: building package 'toppic-common' in '../toppic-common_1.5.3+dfsg1-1_all.deb'. +dpkg-deb: building package 'toppic-dbgsym' in '../toppic-dbgsym_1.5.3+dfsg1-1_arm64.deb'. +dpkg-deb: building package 'toppic' in '../toppic_1.5.3+dfsg1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../toppic_1.5.3+dfsg1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../toppic_1.5.3+dfsg1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -17678,12 +17714,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/401004/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2519744 and its subdirectories -I: Current time: Sat Sep 13 06:31:38 -12 2025 -I: pbuilder-time-stamp: 1757788298 +I: removing directory /srv/workspace/pbuilder/401004 and its subdirectories +I: Current time: Sat Oct 17 14:45:35 +14 2026 +I: pbuilder-time-stamp: 1792197935