Diff of the two buildlogs: -- --- b1/build.log 2025-09-25 05:25:13.231366430 +0000 +++ b2/build.log 2025-09-25 05:44:17.808754706 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 24 17:20:16 -12 2025 -I: pbuilder-time-stamp: 1758777616 +I: Current time: Thu Oct 29 01:48:16 +14 2026 +I: pbuilder-time-stamp: 1793188096 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -26,53 +26,85 @@ dpkg-source: info: applying build-python-bindings.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/477308/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2618936/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 28 11:48 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2618936/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2618936/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8007f003536b45b2b7a04b93a0775367' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='477308' - PS1='# ' - PS2='> ' + INVOCATION_ID=03eeb2fc62e84a018a3d7b4f414fa332 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2618936 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZgFILuly/pbuilderrc_qohJ --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZgFILuly/b1 --logfile b1/build.log voronota_1.29.4415+ds-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZgFILuly/pbuilderrc_2Rro --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZgFILuly/b2 --logfile b2/build.log voronota_1.29.4415+ds-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/477308/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2618936/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -198,7 +230,7 @@ Get: 78 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 swig arm64 4.3.0-2 [1404 kB] -Fetched 45.0 MB in 0s (139 MB/s) +Fetched 45.0 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) @@ -474,8 +506,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Sep 25 05:20:43 UTC 2025. -Universal Time is now: Thu Sep 25 05:20:43 UTC 2025. +Local time is now: Wed Oct 28 11:48:51 UTC 2026. +Universal Time is now: Wed Oct 28 11:48:51 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -545,7 +577,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/voronota-1.29.4415+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../voronota_1.29.4415+ds-1_source.changes +I: user script /srv/workspace/pbuilder/2618936/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/2618936/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/voronota-1.29.4415+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../voronota_1.29.4415+ds-1_source.changes dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.29.4415+ds-1 dpkg-buildpackage: info: source distribution unstable @@ -624,7 +660,7 @@ expansion_lt/swig/CMakeLists.txt:11 (swig_add_library) This warning is for project developers. Use -Wno-dev to suppress it. --- Configuring done (2.1s) +-- Configuring done (2.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -649,71 +685,71 @@ make[2]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/depend make -f expansion_lt/CMakeFiles/voronota-lt.dir/build.make expansion_lt/CMakeFiles/voronota-lt.dir/depend +make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/CMakeFiles/voronota.dir/DependInfo.cmake "--color=" make -f expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build.make expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/CMakeFiles/voronota-lt.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/DependInfo.cmake "--color=" -make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/CMakeFiles/voronota.dir/DependInfo.cmake "--color=" Dependee "/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/DependInfo.cmake" is newer than depender "/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend.internal". +make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' Dependee "/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/depend.internal". +make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/build make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make -f expansion_lt/CMakeFiles/voronota-lt.dir/build.make expansion_lt/CMakeFiles/voronota-lt.dir/build Scanning dependencies of target voronotalt_swig_compilation make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -make -f CMakeFiles/voronota.dir/build.make CMakeFiles/voronota.dir/build -make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make -f expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build.make expansion_lt/swig/CMakeFiles/voronotalt_swig_compilation.dir/build make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 1%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o +[ 3%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o +[ 3%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o +[ 5%] Building CXX object expansion_lt/CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_mock_solvent.cpp +[ 7%] Swig compile voronotalt_python.i for python +[ 9%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o +[ 11%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_contacts.cpp -[ 3%] Building CXX object expansion_lt/CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o -[ 5%] Swig compile voronotalt_python.i for python -[ 7%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o +[ 13%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -fopenmp -MD -MT expansion_lt/CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o -MF CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o.d -o CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/src/voronota_lt.cpp -[ 9%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -[ 11%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E make_directory /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir -[ 13%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_path_centralities.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_path_centralities.cpp -[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_hypercut.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_contacts.cpp -[ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_blank.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_mock_solvent.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_mock_solvent.cpp +[ 15%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_vertices.cpp -[ 19%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_files_as_sets.cpp +cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E make_directory /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_calculate_vertices_in_parallel.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_calculate_vertices_in_parallel.cpp -[ 23%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_polygon_triangulation.cpp +[ 17%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_contacts.cpp +[ 19%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_compare_files_as_sets.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_compare_files_as_sets.cpp +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_blank.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_blank.cpp +[ 21%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E touch /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON.stamp +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_hypercut.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_hypercut.cpp +[ 23%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/cmake -E env SWIG_LIB=/usr/share/swig/4.3.0 /usr/bin/swig -python -outdir /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig -c++ -interface _voronotalt -I/usr/include/python3.13 -I/build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig -I/build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig/../src -o /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig/voronotalt_python.i +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_polygon_triangulation.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_polygon_triangulation.cpp make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' [ 23%] Built target voronotalt_swig_compilation [ 25%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_demo_ses.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_demo_ses.cpp [ 27%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_balls.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_draw_balls.cpp +[ 29%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_draw_contacts.cpp +[ 31%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_draw_values_bitmap.cpp +[ 33%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_expand_descriptors.cpp make -f expansion_lt/swig/CMakeFiles/_voronotalt.dir/build.make expansion_lt/swig/CMakeFiles/_voronotalt.dir/depend make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/voronota-1.29.4415+ds /build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' make -f expansion_lt/swig/CMakeFiles/_voronotalt.dir/build.make expansion_lt/swig/CMakeFiles/_voronotalt.dir/build make[3]: Entering directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 29%] Building CXX object expansion_lt/swig/CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o +[ 35%] Building CXX object expansion_lt/swig/CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig && /usr/bin/c++ -D_voronotalt_EXPORTS -I/usr/include/python3.13 -I/build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig -I/build/reproducible-path/voronota-1.29.4415+ds/expansion_lt/swig/../src -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++14 -fPIC -MD -MT expansion_lt/swig/CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o -MF CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o.d -o CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o -c /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt/swig/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx -[ 31%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_contacts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_draw_contacts.cpp -[ 33%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_draw_values_bitmap.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_draw_values_bitmap.cpp -[ 35%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_expand_descriptors.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_expand_descriptors.cpp [ 37%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_get_balls_from_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_get_balls_from_atoms_file.cpp [ 39%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_place_membrane.cpp.o @@ -746,11 +782,11 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_run_script.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_run_script.cpp [ 66%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_energy.cpp -[ 68%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o +[ 70%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o +[ 68%] Linking CXX executable voronota-lt +cd /build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu/expansion_lt && /usr/bin/cmake -E cmake_link_script CMakeFiles/voronota-lt.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_energy_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_energy_stats.cpp -[ 70%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o [ 72%] Linking CXX shared module _voronotalt.so -/usr/bin/c++ -g -O2 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The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/_voronotalt.dir/link.d -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -shared -o _voronotalt.so CMakeFiles/_voronotalt.dir/CMakeFiles/_voronotalt.dir/voronotalt_pythonPYTHON_wrap.cxx.o make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 72%] Built target _voronotalt -[ 74%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o +[ 74%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_global_energy_by_cuts.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_global_energy_by_cuts.cpp +[ 74%] Built target _voronotalt +[ 76%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potential.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat 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voronota-lt /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a +make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' +[ 76%] Built target voronota-lt +[ 78%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_potentials_stats.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_potentials_stats.cpp -[ 78%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o +[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_score_contacts_quality.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_score_contacts_quality.cpp -[ 80%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o +[ 82%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_score_scores.cpp.o /usr/bin/c++ -g -O2 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CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_split_atoms_file.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_split_atoms_file.cpp -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/voronota-lt.dir/link.d "CMakeFiles/voronota-lt.dir/src/voronota_lt.cpp.o" -o voronota-lt /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a -make[3]: Leaving directory '/build/reproducible-path/voronota-1.29.4415+ds/obj-aarch64-linux-gnu' -[ 86%] Built target voronota-lt [ 88%] Building CXX object CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/voronota-1.29.4415+ds=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -std=gnu++11 -MD -MT CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -MF CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o.d -o CMakeFiles/voronota.dir/src/modes/mode_vectorize_contact_environments.cpp.o -c /build/reproducible-path/voronota-1.29.4415+ds/src/modes/mode_vectorize_contact_environments.cpp In file included from /build/reproducible-path/voronota-1.29.4415+ds/src/modes/../scripting/operators/vcblocks.h:5, @@ -891,10 +927,10 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'python3-voronotalt' in '../python3-voronotalt_1.29.4415+ds-1_arm64.deb'. 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