Diff of the two buildlogs: -- --- b1/build.log 2025-03-04 14:40:11.531840324 +0000 +++ b2/build.log 2025-03-04 15:14:37.778955348 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Apr 6 08:39:15 -12 2026 -I: pbuilder-time-stamp: 1775507955 +I: Current time: Wed Mar 5 04:40:13 +14 2025 +I: pbuilder-time-stamp: 1741099213 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying overriding_testReferenceBasesByRegion.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1297345/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 4 14:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='3bd35c615fa94a6f9277e6baaf39f5d8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1297345' - PS1='# ' - PS2='> ' + INVOCATION_ID=267f65eff4d747a79dce892656c168da + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2964435 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sNBrzaIH/pbuilderrc_JjV2 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sNBrzaIH/b1 --logfile b1/build.log artemis_18.2.0+dfsg-4.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.sNBrzaIH/pbuilderrc_jnj4 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.sNBrzaIH/b2 --logfile b2/build.log artemis_18.2.0+dfsg-4.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1297345/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -621,7 +653,7 @@ Get: 453 http://deb.debian.org/debian trixie/main amd64 maven all 3.9.9-1 [19.7 kB] Get: 454 http://deb.debian.org/debian trixie/main amd64 maven-repo-helper all 1.11 [142 kB] Get: 455 http://deb.debian.org/debian trixie/main amd64 maven-debian-helper all 2.6.7 [108 kB] -Fetched 394 MB in 33s (12.0 MB/s) +Fetched 394 MB in 21s (19.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) @@ -2104,8 +2136,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Apr 6 20:42:25 UTC 2026. -Universal Time is now: Mon Apr 6 20:42:25 UTC 2026. +Local time is now: Tue Mar 4 14:45:01 UTC 2025. +Universal Time is now: Tue Mar 4 14:45:01 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -2726,7 +2758,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-4_source.changes +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/artemis-18.2.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../artemis_18.2.0+dfsg-4_source.changes dpkg-buildpackage: info: source package artemis dpkg-buildpackage: info: source version 18.2.0+dfsg-4 dpkg-buildpackage: info: source distribution unstable @@ -2745,7 +2781,7 @@ rm -f -rf target/modifiedJars make[1]: Leaving directory '/build/reproducible-path/artemis-18.2.0+dfsg' jh_clean -Duplicate specification "unlink|u" for option "u" +Duplicate specification "u=s" for option "u" dh_clean debian/rules binary dh binary --with javahelper @@ -2830,8 +2866,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 24.262 s -[INFO] Finished at: 2026-04-06T08:45:14-12:00 +[INFO] Total time: 20.679 s +[INFO] Finished at: 2025-03-05T04:46:28+14:00 [INFO] ------------------------------------------------------------------------ # Now, 4 jars are meant to be created: they are similar to each other but # do not exactly have the same contents. We design this with the pom.xml file, @@ -2904,58 +2940,36 @@ [INFO] ------------------------------------------------------- [INFO] T E S T S [INFO] ------------------------------------------------------- -[INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest -[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.034 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest -[INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest -[INFO] Running uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in uk.ac.sanger.artemis.util.IconManagerTest -[INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.673 s - in uk.ac.sanger.artemis.FeatureSegmentTest -[INFO] Running uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.74 s - in uk.ac.sanger.artemis.sequence.StrandTest -[INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.573 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest -[INFO] Running uk.ac.sanger.artemis.sequence.BasesTest -[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.79 s - in uk.ac.sanger.artemis.sequence.BasesTest [INFO] Running uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.781 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest -[INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.539 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest -[INFO] Running uk.ac.sanger.artemis.io.LocationTest -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.058 s - in uk.ac.sanger.artemis.io.LocationTest -[INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest -[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.07 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.001 s - in uk.ac.sanger.artemis.io.SimpleDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.992 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest -[INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.255 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.598 s - in uk.ac.sanger.artemis.io.LineGroupCacheTest +[INFO] Running uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.103 s - in uk.ac.sanger.artemis.io.BlastStreamFeatureTest +[INFO] Running uk.ac.sanger.artemis.io.LocationTest +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.104 s - in uk.ac.sanger.artemis.io.LocationTest [INFO] Running uk.ac.sanger.artemis.io.GffToEMBLTest Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/Pf3D7_01_02_v3.gff.gz.embl.gz Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test.gff.gz.embl.gz Written... /build/reproducible-path/artemis-18.2.0+dfsg/target/test-classes/data/gff/test_boundary.gff.gz.embl.gz -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.366 s - in uk.ac.sanger.artemis.io.GffToEMBLTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.594 s - in uk.ac.sanger.artemis.io.GffToEMBLTest +[INFO] Running uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.618 s - in uk.ac.sanger.artemis.io.IndexedGFFDocumentEntryTest [INFO] Running uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest -[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.098 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest +[INFO] Tests run: 15, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.721 s - in uk.ac.sanger.artemis.io.GFF3AttributeBuilderTest [INFO] Running uk.ac.sanger.artemis.io.GFF3EncoderTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.165 s - in uk.ac.sanger.artemis.io.GFF3EncoderTest +[INFO] Running uk.ac.sanger.artemis.io.ValidateFeatureTest +[INFO] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.696 s - in uk.ac.sanger.artemis.io.ValidateFeatureTest [INFO] Running uk.ac.sanger.artemis.io.GFFTest -[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.036 s - in uk.ac.sanger.artemis.io.GFFTest -[INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.492 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest -[INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.046 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest -[INFO] Running uk.ac.sanger.artemis.components.EditMenuTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.062 s - in uk.ac.sanger.artemis.components.EditMenuTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.032 s - in uk.ac.sanger.artemis.io.GFFTest +[INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.665 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest [INFO] Running uk.ac.sanger.artemis.components.RunInterProSearchTest -08:56:29.225 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong -08:56:29.240 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong -08:56:29.255 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 -[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.621 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest -[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.061 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest +04:53:03.885 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query: Oops something went wrong +04:53:04.102 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: Failed to send InterPro query due to an unknown host error: Oops something went wrong +04:53:04.328 [main] ERROR uk.ac.sanger.artemis.components.RunInterProSearch - ERROR: HTTP error received from EBI InterPro website: 403 +[INFO] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 18.638 s - in uk.ac.sanger.artemis.components.RunInterProSearchTest [INFO] Running uk.ac.sanger.artemis.components.alignment.BamUtilsTest testGetExistingIndexFileForFtpCram(): This test creates index files and may be slow to complete testGetExistingIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server @@ -2963,23 +2977,45 @@ testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testGetIndexFileForFtpBam() : WARNING: Unable to run this test as cannot connect to Sanger FTP server testCreateIndexFileForFtpCram() : WARNING: Unable to run this test as cannot connect to Sanger FTP server -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.46 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.354 s - in uk.ac.sanger.artemis.components.alignment.BamUtilsTest +[INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.487 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsTest [INFO] Running uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest -[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.054 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest -[INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest -[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.446 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest -[INFO] Running uk.ac.sanger.artemis.components.TransferAnnotationToolTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.805 s - in uk.ac.sanger.artemis.components.TransferAnnotationToolTest +[INFO] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.852 s - in uk.ac.sanger.artemis.components.alignment.MappedReadsWithMultipleFilesTest +[INFO] Running uk.ac.sanger.artemis.components.EditMenuTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.726 s - in uk.ac.sanger.artemis.components.EditMenuTest [INFO] Running uk.ac.sanger.artemis.components.DbfetchEntrySourceTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.694 s - in uk.ac.sanger.artemis.components.DbfetchEntrySourceTest +[INFO] Running uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest +[WARNING] Tests run: 4, Failures: 0, Errors: 0, Skipped: 4, Time elapsed: 0.494 s - in uk.ac.sanger.artemis.components.variant.WriteVariantSitesTest +[INFO] Running uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest +[INFO] Tests run: 29, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 27.333 s - in uk.ac.sanger.artemis.components.genebuilder.cv.GoBoxTest +[INFO] Running uk.ac.sanger.artemis.components.ProjectPropertyTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 6.676 s - in uk.ac.sanger.artemis.components.ProjectPropertyTest [INFO] Running uk.ac.sanger.artemis.editor.EvidenceViewerTest -[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.043 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.557 s - in uk.ac.sanger.artemis.editor.EvidenceViewerTest [INFO] Running uk.ac.sanger.artemis.FeatureTest -[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 16.672 s - in uk.ac.sanger.artemis.FeatureTest -[INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest -[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.701 s - in uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Tests run: 75, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 172.028 s - in uk.ac.sanger.artemis.FeatureTest [INFO] Running uk.ac.sanger.artemis.ComparisonDataFactoryTest -[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.927 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 12.396 s - in uk.ac.sanger.artemis.ComparisonDataFactoryTest +[INFO] Running uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.155 s - in uk.ac.sanger.artemis.util.IconManagerTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.884 s - in uk.ac.sanger.artemis.circular.digest.CircularGenomeControllerTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.UtilsTest +[WARNING] Tests run: 1, Failures: 0, Errors: 0, Skipped: 1, Time elapsed: 0.71 s - in uk.ac.sanger.artemis.circular.digest.UtilsTest +[INFO] Running uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.736 s - in uk.ac.sanger.artemis.circular.digest.EmbossTableParserTest +[INFO] Running uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 5.988 s - in uk.ac.sanger.artemis.plot.UserPlotTest +[INFO] Running uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.523 s - in uk.ac.sanger.artemis.FeatureSegmentTest +[INFO] Running uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.525 s - in uk.ac.sanger.artemis.sequence.AminoAcidSequenceTest +[INFO] Running uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.169 s - in uk.ac.sanger.artemis.sequence.StrandTest +[INFO] Running uk.ac.sanger.artemis.sequence.BasesTest +[INFO] Tests run: 28, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 4.922 s - in uk.ac.sanger.artemis.sequence.BasesTest [INFO] [INFO] Results: [INFO] @@ -2988,8 +3024,8 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 17:08 min -[INFO] Finished at: 2026-04-06T09:02:31-12:00 +[INFO] Total time: 22:39 min +[INFO] Finished at: 2025-03-05T05:09:13+14:00 [INFO] ------------------------------------------------------------------------ make[1]: Leaving directory '/build/reproducible-path/artemis-18.2.0+dfsg' create-stamp debian/debhelper-build-stamp @@ -3023,15 +3059,15 @@ [INFO] ------------------------------------------------------------------------ [INFO] BUILD SUCCESS [INFO] ------------------------------------------------------------------------ -[INFO] Total time: 0.484 s -[INFO] Finished at: 2026-04-06T09:02:33-12:00 +[INFO] Total time: 3.927 s +[INFO] Finished at: 2025-03-05T05:09:27+14:00 [INFO] ------------------------------------------------------------------------ mh_resolve_dependencies --non-interactive --offline --build -partemis --base-directory=/build/reproducible-path/artemis-18.2.0\+dfsg --non-explore Analysing pom.xml... > dpkg --search /usr/share/maven-repo/org/emboss/jemboss/*/* dpkg failed to execute successfully Offline mode. Give up looking for package containing /usr/share/maven-repo/org/emboss/jemboss -Apr 06, 2026 9:02:39 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve +Mar 05, 2025 5:09:42 AM org.debian.maven.packager.DependenciesSolver$ToResolve resolve SEVERE: Cannot resolve dependencies in /build/reproducible-path/artemis-18.2.0+dfsg/pom.xml: Dependency not found org.emboss:jemboss:jar:debian ERROR: pom.xml: dependency is not packaged in the Maven repository for Debian: org.emboss:jemboss:debian @@ -3075,12 +3111,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2964435/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1297345 and its subdirectories -I: Current time: Mon Apr 6 09:03:10 -12 2026 -I: pbuilder-time-stamp: 1775509390 +I: removing directory /srv/workspace/pbuilder/2964435 and its subdirectories +I: Current time: Wed Mar 5 05:14:36 +14 2025 +I: pbuilder-time-stamp: 1741101276