Diff of the two buildlogs: -- --- b1/build.log 2025-03-07 16:00:13.201829097 +0000 +++ b2/build.log 2025-03-07 16:04:32.722122089 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Apr 9 10:20:43 -12 2026 -I: pbuilder-time-stamp: 1775773243 +I: Current time: Sat Mar 8 06:00:15 +14 2025 +I: pbuilder-time-stamp: 1741363215 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying add_soname.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2760277/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/D01_modify_environment starting +debug: Running on ionos1-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 7 16:00 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='f94c997a1b094918bcc5bb32b67e9b77' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2760277' - PS1='# ' - PS2='> ' + INVOCATION_ID=7415d75e29364de5902e2975fb77bf5d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3767070 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/pbuilderrc_4Vig --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/b1 --logfile b1/build.log bifrost_1.3.1-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/pbuilderrc_TomZ --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.hrgiN0wD/b2 --logfile b2/build.log bifrost_1.3.1-1.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2760277/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -173,7 +205,7 @@ Get: 60 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] Get: 62 http://deb.debian.org/debian trixie/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] -Fetched 41.7 MB in 8s (5131 kB/s) +Fetched 41.7 MB in 3s (13.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -436,7 +468,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bifrost-1.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bifrost_1.3.1-1_source.changes +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bifrost-1.3.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bifrost_1.3.1-1_source.changes dpkg-buildpackage: info: source package bifrost dpkg-buildpackage: info: source version 1.3.1-1 dpkg-buildpackage: info: source distribution unstable @@ -500,7 +536,7 @@ -- Build files have been written to: /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/bifrost-1.3.1' dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.1 -B/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -513,66 +549,66 @@ make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.1 /build/reproducible-path/bifrost-1.3.1/src /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src/CMakeFiles/bifrost_dynamic.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/bifrost_static.dir/build.make src/CMakeFiles/bifrost_static.dir/build -make -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/build -make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/bifrost_dynamic.dir/build.make src/CMakeFiles/bifrost_dynamic.dir/build [ 3%] Building CXX object src/CMakeFiles/bifrost_static.dir/Bifrost.cpp.o -[ 6%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o -[ 9%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -[ 12%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -[ 15%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -[ 18%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -[ 25%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -[ 25%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o +[ 6%] Building CXX object src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o +make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong 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/build/reproducible-path/bifrost-1.3.1/src/ColorSet.cpp -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp -[ 31%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -[ 34%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp -[ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedSequence.cpp -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp -[ 40%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o +[ 12%] Building CXX object src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp +[ 12%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o +[ 15%] Building CXX object src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o +[ 18%] Building CXX object src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp +[ 21%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedCoverage.cpp +[ 25%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o +[ 28%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o +[ 37%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o +[ 37%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Bifrost.cpp -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/FASTX_Parser.cpp -[ 43%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -[ 46%] Building CXX object src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_static.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_static.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. 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-MF CMakeFiles/bifrost_static.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp -[ 56%] Building CXX object src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/FASTX_Parser.cpp -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 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-ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BitContainer.cpp -[ 62%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp +[ 43%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/CompressedCoverage.cpp -[ 65%] Building CXX object src/CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -MF CMakeFiles/bifrost_static.dir/ColorSet.cpp.o.d -o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/ColorSet.cpp +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time 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src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o +[ 50%] Building CXX object src/CMakeFiles/bifrost_static.dir/Kmer.cpp.o +[ 53%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/BlockedBloomFilter.cpp +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 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src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -[ 75%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -MF CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o.d -o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.cpp +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong 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/usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp -[ 78%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o +[ 62%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp -[ 81%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o -[ 84%] Building CXX object src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -[ 87%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp +[ 65%] Building CXX object src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp +[ 68%] Building C object src/CMakeFiles/bifrost_static.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/roaring.c.o -MF CMakeFiles/bifrost_static.dir/roaring.c.o.d -o CMakeFiles/bifrost_static.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.1/src/roaring.c +[ 71%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Kmer.cpp +[ 75%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/KmerIterator.cpp +[ 78%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/MinimizerIndex.cpp +[ 81%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -MF CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o.d -o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/TinyBitmap.cpp +[ 84%] Building CXX object src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -MF CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o.d -o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/UnitigMap.cpp +[ 87%] Building C object src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cc -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -Dbifrost_dynamic_EXPORTS -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c11 -fPIC -O3 -MD -MT src/CMakeFiles/bifrost_dynamic.dir/roaring.c.o -MF CMakeFiles/bifrost_dynamic.dir/roaring.c.o.d -o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -c /build/reproducible-path/bifrost-1.3.1/src/roaring.c In file included from /usr/include/c++/14/string:42, from /build/reproducible-path/bifrost-1.3.1/src/GFA_Parser.hpp:4, @@ -604,21 +640,21 @@ /usr/include/c++/14/bits/char_traits.h:427:56: note: in a call to built-in function 'void* __builtin_memcpy(void*, const void*, long unsigned int)' [ 90%] Linking CXX shared library libbifrost.so cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_dynamic.dir/link.txt --verbose=1 +[ 93%] Linking CXX static library libbifrost.a +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bifrost_static.dir/cmake_clean_target.cmake +cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_static.dir/link.txt --verbose=1 /usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wl,--dependency-file=CMakeFiles/bifrost_dynamic.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libbifrost.so.0 -o libbifrost.so.0 CMakeFiles/bifrost_dynamic.dir/Bifrost.cpp.o CMakeFiles/bifrost_dynamic.dir/BitContainer.cpp.o CMakeFiles/bifrost_dynamic.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_dynamic.dir/ColorSet.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_dynamic.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_dynamic.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_dynamic.dir/Kmer.cpp.o CMakeFiles/bifrost_dynamic.dir/KmerIterator.cpp.o CMakeFiles/bifrost_dynamic.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_dynamic.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_dynamic.dir/UnitigMap.cpp.o CMakeFiles/bifrost_dynamic.dir/roaring.c.o -lz cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_symlink_library libbifrost.so.0 libbifrost.so.0 libbifrost.so make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' -[ 90%] Built target bifrost_dynamic +[ 93%] Built target bifrost_dynamic make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/depend make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bifrost-1.3.1 /build/reproducible-path/bifrost-1.3.1/src /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src/CMakeFiles/Bifrost.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' make -f src/CMakeFiles/Bifrost.dir/build.make src/CMakeFiles/Bifrost.dir/build make[3]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' -[ 93%] Building CXX object src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o +[ 96%] Building CXX object src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/c++ -DMAX_GMER_SIZE=32 -DMAX_KMER_SIZE=32 -I/build/reproducible-path/bifrost-1.3.1/src -g -O2 -ffile-prefix-map=/build/reproducible-path/bifrost-1.3.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -O3 -MD -MT src/CMakeFiles/Bifrost.dir/Bifrost.cpp.o -MF CMakeFiles/Bifrost.dir/Bifrost.cpp.o.d -o CMakeFiles/Bifrost.dir/Bifrost.cpp.o -c /build/reproducible-path/bifrost-1.3.1/src/Bifrost.cpp -[ 96%] Linking CXX static library libbifrost.a -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/bifrost_static.dir/cmake_clean_target.cmake -cd /build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/bifrost_static.dir/link.txt --verbose=1 /usr/bin/ar qc libbifrost.a CMakeFiles/bifrost_static.dir/Bifrost.cpp.o CMakeFiles/bifrost_static.dir/BitContainer.cpp.o CMakeFiles/bifrost_static.dir/BlockedBloomFilter.cpp.o CMakeFiles/bifrost_static.dir/ColorSet.cpp.o CMakeFiles/bifrost_static.dir/CompressedCoverage.cpp.o CMakeFiles/bifrost_static.dir/CompressedSequence.cpp.o CMakeFiles/bifrost_static.dir/FASTX_Parser.cpp.o CMakeFiles/bifrost_static.dir/GFA_Parser.cpp.o CMakeFiles/bifrost_static.dir/Kmer.cpp.o CMakeFiles/bifrost_static.dir/KmerIterator.cpp.o CMakeFiles/bifrost_static.dir/MinimizerIndex.cpp.o CMakeFiles/bifrost_static.dir/TinyBitmap.cpp.o CMakeFiles/bifrost_static.dir/UnitigMap.cpp.o CMakeFiles/bifrost_static.dir/roaring.c.o /usr/bin/ranlib libbifrost.a make[3]: Leaving directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' @@ -635,7 +671,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/bifrost-1.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/bifrost-1.3.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bifrost-1.3.1 -B/build/reproducible-path/bifrost-1.3.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -743,10 +779,10 @@ dpkg-gencontrol: warning: package libbifrost-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb -dpkg-deb: building package 'bifrost-dbgsym' in '../bifrost-dbgsym_1.3.1-1_amd64.deb'. dpkg-deb: building package 'bifrost' in '../bifrost_1.3.1-1_amd64.deb'. -dpkg-deb: building package 'libbifrost0-dbgsym' in '../libbifrost0-dbgsym_1.3.1-1_amd64.deb'. +dpkg-deb: building package 'bifrost-dbgsym' in '../bifrost-dbgsym_1.3.1-1_amd64.deb'. dpkg-deb: building package 'libbifrost0' in '../libbifrost0_1.3.1-1_amd64.deb'. +dpkg-deb: building package 'libbifrost0-dbgsym' in '../libbifrost0-dbgsym_1.3.1-1_amd64.deb'. dpkg-deb: building package 'libbifrost-dev' in '../libbifrost-dev_1.3.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../bifrost_1.3.1-1_amd64.buildinfo dpkg-genchanges --build=binary -O../bifrost_1.3.1-1_amd64.changes @@ -755,12 +791,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3767070/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2760277 and its subdirectories -I: Current time: Thu Apr 9 10:23:11 -12 2026 -I: pbuilder-time-stamp: 1775773391 +I: removing directory /srv/workspace/pbuilder/3767070 and its subdirectories +I: Current time: Sat Mar 8 06:04:32 +14 2025 +I: pbuilder-time-stamp: 1741363472