Diff of the two buildlogs: -- --- b1/build.log 2025-03-17 15:17:02.634524887 +0000 +++ b2/build.log 2025-03-17 15:19:13.144662552 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Apr 19 09:38:03 -12 2026 -I: pbuilder-time-stamp: 1776634683 +I: Current time: Tue Mar 18 05:17:05 +14 2025 +I: pbuilder-time-stamp: 1742224625 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2492046/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 17 15:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='e1c0d242791e45e0899a5572fdc51e4e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2492046' - PS1='# ' - PS2='> ' + INVOCATION_ID=5e06a955da0642259c610562101c95e7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2001414 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qUgOK1iE/pbuilderrc_vVE5 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qUgOK1iE/b1 --logfile b1/build.log bppsuite_2.4.1-7.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.qUgOK1iE/pbuilderrc_rleu --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.qUgOK1iE/b2 --logfile b2/build.log bppsuite_2.4.1-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos5-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2492046/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -200,7 +232,7 @@ Get: 82 http://deb.debian.org/debian trixie/main amd64 tex-common all 6.19 [29.4 kB] Get: 83 http://deb.debian.org/debian trixie/main amd64 texinfo-lib amd64 7.1.1-1+b1 [232 kB] Get: 84 http://deb.debian.org/debian trixie/main amd64 texinfo all 7.1.1-1 [1753 kB] -Fetched 52.6 MB in 2s (29.9 MB/s) +Fetched 52.6 MB in 1s (46.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19803 files and directories currently installed.) @@ -560,7 +592,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable @@ -610,7 +646,7 @@ -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) --- Configuring done (1.4s) +-- Configuring done (0.7s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -622,7 +658,7 @@ -- Build files have been written to: /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu dh_auto_build - cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -631,136 +667,136 @@ make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend +make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake "--color=" +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake "--color=" make -f doc/CMakeFiles/info.dir/build.make doc/CMakeFiles/info.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake 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"--color=" -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite/CMakeFiles/bpptreedraw.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/man /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/CMakeFiles/man.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make 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bppmixedlikelihoods.1 +[ 47%] Compressing manpage bppdist.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppdist.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppdist.1.gz -[ 57%] Compressing manpage bppseqman.1 -[ 60%] Compressing manpage bppseqgen.1 -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpppars.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bpppars.1.gz -[ 63%] Compressing manpage bpptreedraw.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppmixedlikelihoods.1 > /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/man/bppmixedlikelihoods.1.gz -[ 65%] Compressing manpage bppreroot.1 +[ 50%] Compressing manpage bppml.1 +cd 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CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 76%] Built target bppseqman [ 78%] Linking CXX executable bpptreedraw cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 -[ 81%] Linking CXX executable bppreroot -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable bpppars -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 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-Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bpppars.dir/link.d CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 84%] Built target bpppars @@ -803,16 +839,16 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppmixedlikelihoods.dir/link.d CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 86%] Built target bppmixedlikelihoods -[ 89%] Linking CXX executable bppdist -cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' -[ 89%] Built target bppdist -[ 92%] Linking CXX executable bppancestor +[ 89%] Linking CXX executable bppancestor cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 +[ 92%] Linking CXX executable bppdist +cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' [ 92%] Built target bppancestor +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' +[ 92%] Built target bppdist [ 94%] Linking CXX executable bppseqgen cd /build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/x86_64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/x86_64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/x86_64-linux-gnu/libbpp-core.so.4.1.0 @@ -835,7 +871,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install - cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -893,8 +929,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_amd64.deb'. dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-7_amd64.deb'. +dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_amd64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-7_amd64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-7_amd64.changes @@ -903,12 +939,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2001414/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2492046 and its subdirectories -I: Current time: Sun Apr 19 09:40:01 -12 2026 -I: pbuilder-time-stamp: 1776634801 +I: removing directory /srv/workspace/pbuilder/2001414 and its subdirectories +I: Current time: Tue Mar 18 05:19:12 +14 2025 +I: pbuilder-time-stamp: 1742224752