Diff of the two buildlogs: -- --- b1/build.log 2025-03-11 17:07:16.212540170 +0000 +++ b2/build.log 2025-03-11 17:11:21.285481754 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Mar 11 05:04:16 -12 2025 -I: pbuilder-time-stamp: 1741712656 +I: Current time: Tue Apr 14 13:30:15 +14 2026 +I: pbuilder-time-stamp: 1776123015 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -32,52 +32,84 @@ dpkg-source: info: applying skip_tests_touching_security_sensitive_fields.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1844930/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 13 23:30 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='830a72c9214542229427c42c1dafeced' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1844930' - PS1='# ' - PS2='> ' + INVOCATION_ID=e7126e95e0614a56a374de334d8eb3e7 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1559480 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2LmU0Z4t/pbuilderrc_Fzxy --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2LmU0Z4t/b1 --logfile b1/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.2LmU0Z4t/pbuilderrc_KNa2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.2LmU0Z4t/b2 --logfile b2/build.log capsule-nextflow_1.1.1+dfsg-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1844930/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -296,7 +328,7 @@ Get: 167 http://deb.debian.org/debian trixie/main amd64 libjacoco-java all 0.8.12-1 [647 kB] Get: 168 http://deb.debian.org/debian trixie/main amd64 libjimfs-java all 1.1-6 [191 kB] Get: 169 http://deb.debian.org/debian trixie/main amd64 libtruth-java all 0.39-1 [164 kB] -Fetched 234 MB in 14s (16.4 MB/s) +Fetched 234 MB in 21s (11.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -1188,7 +1220,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../capsule-nextflow_1.1.1+dfsg-1_source.changes dpkg-buildpackage: info: source package capsule-nextflow dpkg-buildpackage: info: source version 1.1.1+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1211,7 +1247,7 @@ dh_auto_build -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=20 jar + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=42 jar openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) @@ -1219,18 +1255,18 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.832 secs. -The client will now receive all logging from the daemon (pid: 1885948). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-1885948.out.log -Daemon will be stopped at the end of the build stopping after processing +An attempt to start the daemon took 2.042 secs. +The client will now receive all logging from the daemon (pid: 1627203). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-1627203.out.log Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 20 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@2edcb155 -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@2edcb155 -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@1cb7d722 +Daemon will be stopped at the end of the build stopping after processing +Using 42 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@721cc467 +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@721cc467 +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@357511fa Starting Build Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using SubsetScriptTransformer. -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@303126c8 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@5119148c Compiling initialization script '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/init.d/init.gradle' using BuildScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using SubsetScriptTransformer. Compiling settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle' using BuildScriptTransformer. @@ -1253,35 +1289,35 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'jar' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@308e77a7 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@20e46eeb Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@1cb7d722 -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@33a5d796 -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@5b3cc9a7 -:capsule:compileJava (Thread[#64,Task worker for ':',5,main]) started. -:capsule-util:compileJava (Thread[#70,Task worker for ':' Thread 7,5,main]) started. -:capsule-util:compileJava +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@357511fa +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@41c895e1 +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@24a904b8 +:capsule:compileJava (Thread[#88,Task worker for ':' Thread 5,5,main]) started. +:capsule-util:compileJava (Thread[#97,Task worker for ':' Thread 14,5,main]) started. :capsule:compileJava -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.015 secs. -Putting task artifact state for task ':capsule:compileJava' into context took 0.015 secs. -Up-to-date check for task ':capsule:compileJava' took 0.036 secs. It is not up-to-date because: +:capsule-util:compileJava +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.004 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.004 secs. +Up-to-date check for task ':capsule:compileJava' took 0.014 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. -Up-to-date check for task ':capsule-util:compileJava' took 0.093 secs. It is not up-to-date because: +warning: [options] source value 8 is obsolete and will be removed in a future release +warning: [options] target value 8 is obsolete and will be removed in a future release +warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. +Up-to-date check for task ':capsule-util:compileJava' took 0.163 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule-util:compileJava'. Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. warning: [options] source value 8 is obsolete and will be removed in a future release -warning: [options] source value 8 is obsolete and will be removed in a future release -warning: [options] target value 8 is obsolete and will be removed in a future release warning: [options] target value 8 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. -warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/src/main/java/co/paralleluniverse/common/ZipFileSystem.java:949: warning: [removal] finalize() in Object has been deprecated and marked for removal protected void finalize() throws IOException { ^ @@ -1291,72 +1327,72 @@ /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java:5712: warning: [removal] getSecurityManager() in System has been deprecated and marked for removal final SecurityManager security = System.getSecurityManager(); ^ -Note: Some input files use or override a deprecated API. -Note: Recompile with -Xlint:deprecation for details. -Note: Some input files use unchecked or unsafe operations. -Note: Recompile with -Xlint:unchecked for details. -4 warnings -:capsule-util:compileJava (Thread[#70,Task worker for ':' Thread 7,5,main]) completed. Took 3.655 secs. -:capsule-util:processResources (Thread[#70,Task worker for ':' Thread 7,5,main]) started. -:capsule-util:processResources -Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Up-to-date check for task ':capsule-util:processResources' took 0.007 secs. It is not up-to-date because: - No history is available. -:capsule-util:processResources (Thread[#70,Task worker for ':' Thread 7,5,main]) completed. Took 0.073 secs. -:capsule-util:classes (Thread[#70,Task worker for ':' Thread 7,5,main]) started. -:capsule-util:classes -Skipping task ':capsule-util:classes' as it has no actions. -:capsule-util:classes (Thread[#70,Task worker for ':' Thread 7,5,main]) completed. Took 0.001 secs. -:capsule-util:debianMavenPom (Thread[#70,Task worker for ':' Thread 7,5,main]) started. -:capsule-util:debianMavenPom -Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/java/Capsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 5 warnings -Up-to-date check for task ':capsule-util:debianMavenPom' took 0.002 secs. It is not up-to-date because: - No history is available. -:capsule:compileJava (Thread[#64,Task worker for ':',5,main]) completed. Took 3.762 secs. -:capsule:processResources (Thread[#64,Task worker for ':',5,main]) started. +:capsule:compileJava (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 1.954 secs. +:capsule:processResources (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[#64,Task worker for ':',5,main]) completed. Took 0.004 secs. -:capsule:classes (Thread[#64,Task worker for ':',5,main]) started. +:capsule:processResources (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.018 secs. +:capsule:classes (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. -:capsule:classes (Thread[#64,Task worker for ':',5,main]) completed. Took 0.001 secs. -:capsule:debianMavenPom (Thread[#64,Task worker for ':',5,main]) started. +:capsule:classes (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.001 secs. +:capsule:debianMavenPom (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. -Up-to-date check for task ':capsule:debianMavenPom' took 0.002 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:debianMavenPom' took 0.001 secs. It is not up-to-date because: No history is available. - Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom +Note: Some input files use or override a deprecated API. +Note: Recompile with -Xlint:deprecation for details. +Note: Some input files use unchecked or unsafe operations. +Note: Recompile with -Xlint:unchecked for details. +4 warnings Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/debian/capsule.pom -:capsule:debianMavenPom (Thread[#64,Task worker for ':',5,main]) completed. Took 0.141 secs. -:capsule:jar (Thread[#64,Task worker for ':',5,main]) started. +:capsule:debianMavenPom (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.098 secs. +:capsule-util:compileJava (Thread[#97,Task worker for ':' Thread 14,5,main]) completed. Took 2.08 secs. +:capsule:jar (Thread[#88,Task worker for ':' Thread 5,5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -:capsule-util:debianMavenPom (Thread[#70,Task worker for ':' Thread 7,5,main]) completed. Took 0.174 secs. -:capsule-util:jar (Thread[#70,Task worker for ':' Thread 7,5,main]) started. +:capsule-util:processResources (Thread[#100,Task worker for ':' Thread 17,5,main]) started. +:capsule-util:processResources +Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. +Up-to-date check for task ':capsule-util:processResources' took 0.058 secs. It is not up-to-date because: + No history is available. +Up-to-date check for task ':capsule:jar' took 0.06 secs. It is not up-to-date because: + No history is available. +:capsule-util:processResources (Thread[#100,Task worker for ':' Thread 17,5,main]) completed. Took 0.165 secs. +:capsule-util:classes (Thread[#100,Task worker for ':' Thread 17,5,main]) started. +:capsule-util:classes +Skipping task ':capsule-util:classes' as it has no actions. +:capsule:jar (Thread[#88,Task worker for ':' Thread 5,5,main]) completed. Took 0.168 secs. +:capsule-util:classes (Thread[#100,Task worker for ':' Thread 17,5,main]) completed. Took 0.003 secs. +:capsule-util:debianMavenPom (Thread[#100,Task worker for ':' Thread 17,5,main]) started. +:capsule-util:debianMavenPom +Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. +Up-to-date check for task ':capsule-util:debianMavenPom' took 0.0 secs. It is not up-to-date because: + No history is available. + Generating pom file /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/debian/capsule-util.pom +:capsule-util:debianMavenPom (Thread[#100,Task worker for ':' Thread 17,5,main]) completed. Took 0.006 secs. +:capsule-util:jar (Thread[#100,Task worker for ':' Thread 17,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Up-to-date check for task ':capsule:jar' took 0.015 secs. It is not up-to-date because: - No history is available. -Up-to-date check for task ':capsule-util:jar' took 0.023 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:jar' took 0.007 secs. It is not up-to-date because: No history is available. -:capsule:jar (Thread[#64,Task worker for ':',5,main]) completed. Took 0.097 secs. -:capsule-util:jar (Thread[#70,Task worker for ':' Thread 7,5,main]) completed. Took 0.127 secs. +:capsule-util:jar (Thread[#100,Task worker for ':' Thread 17,5,main]) completed. Took 0.179 secs. -BUILD SUCCESSFUL in 16s +BUILD SUCCESSFUL in 14s 7 actionable tasks: 7 executed dh_auto_test -O--buildsystem=gradle mkdir -p .gradle/init.d cp /usr/share/gradle-debian-helper/init.gradle .gradle/init.d/ - gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=20 test + gradle --info --console plain --offline --stacktrace --no-daemon --refresh-dependencies --gradle-user-home .gradle -Duser.home=. -Duser.name=debian -Ddebian.package=capsule-nextflow -Dfile.encoding=UTF-8 --parallel --max-workers=42 test openjdk version "21.0.6" 2025-01-21 OpenJDK Runtime Environment (build 21.0.6+7-Debian-1) OpenJDK 64-Bit Server VM (build 21.0.6+7-Debian-1, mixed mode, sharing) @@ -1364,17 +1400,17 @@ To honour the JVM settings for this build a new JVM will be forked. Please consider using the daemon: https://docs.gradle.org/4.4.1/userguide/gradle_daemon.html. Starting process 'Gradle build daemon'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1 Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java --add-opens java.base/java.lang=ALL-UNNAMED -Xbootclasspath/a:/usr/share/java/gradle-helper-hook.jar:/usr/share/java/maven-repo-helper.jar -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -cp /usr/share/gradle/lib/gradle-launcher-4.4.1.jar org.gradle.launcher.daemon.bootstrap.GradleDaemon 4.4.1 Successfully started process 'Gradle build daemon' -An attempt to start the daemon took 1.623 secs. -The client will now receive all logging from the daemon (pid: 1889417). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-1889417.out.log +An attempt to start the daemon took 1.296 secs. +The client will now receive all logging from the daemon (pid: 1630239). The daemon log file: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/daemon/4.4.1/daemon-1630239.out.log Daemon will be stopped at the end of the build stopping after processing Closing daemon's stdin at end of input. The daemon will no longer process any standard input. -Using 20 worker leases. -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@23380bdf -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@23380bdf -Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@4dd6d20a +Using 42 worker leases. +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@3feb1ab +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@3feb1ab +Creating new cache for fileHashes, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/fileHashes.bin, access org.gradle.cache.internal.DefaultCacheAccess@50242f41 Starting Build -Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@73fd8f34 +Creating new cache for metadata-1.1/results, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/transforms-1/metadata-1.1/results.bin, access org.gradle.cache.internal.DefaultCacheAccess@2a93efa2 Settings evaluated using settings file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/settings.gradle'. Projects loaded. Root project using build file '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/build.gradle'. Included projects: [root project 'capsule', project ':capsule', project ':capsule-util'] @@ -1392,91 +1428,89 @@ Linking the generated javadoc to the system JDK API documentation All projects evaluated. Selected primary task 'test' from project : -Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@6a9ebd06 +Creating new cache for annotation-processors, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileContent/annotation-processors.bin, access org.gradle.cache.internal.DefaultCacheAccess@42295ff Tasks to be executed: [task ':capsule:compileJava', task ':capsule:processResources', task ':capsule:classes', task ':capsule:debianMavenPom', task ':capsule:jar', task ':capsule-util:compileJava', task ':capsule-util:processResources', task ':capsule-util:classes', task ':capsule-util:debianMavenPom', task ':capsule-util:jar', task ':capsule:compileTestJava', task ':capsule:processTestResources', task ':capsule:testClasses', task ':capsule:test', task ':capsule-util:compileTestJava', task ':capsule-util:processTestResources', task ':capsule-util:testClasses', task ':capsule-util:test'] -Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@4dd6d20a -Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@4f5bb89c -Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@33176760 -:capsule:compileJava (Thread[#64,Task worker for ':',5,main]) started. +Creating new cache for resourceHashesCache, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/fileHashes/resourceHashesCache.bin, access org.gradle.cache.internal.DefaultCacheAccess@50242f41 +Creating new cache for taskHistory, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/4.4.1/taskHistory/taskHistory.bin, access org.gradle.cache.internal.DefaultCacheAccess@77e25803 +Creating new cache for outputFiles, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/buildOutputCleanup/outputFiles.bin, access org.gradle.cache.internal.DefaultCacheAccess@384d4c18 +:capsule:compileJava (Thread[#84,Task worker for ':',5,main]) started. +:capsule-util:compileJava (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule:compileJava -:capsule-util:compileJava (Thread[#74,Task worker for ':' Thread 11,5,main]) started. :capsule-util:compileJava -Putting task artifact state for task ':capsule:compileJava' into context took 0.013 secs. -Putting task artifact state for task ':capsule-util:compileJava' into context took 0.013 secs. -Skipping task ':capsule:compileJava' as it is up-to-date (took 0.067 secs). +Putting task artifact state for task ':capsule-util:compileJava' into context took 0.004 secs. +Putting task artifact state for task ':capsule:compileJava' into context took 0.004 secs. +Skipping task ':capsule:compileJava' as it is up-to-date (took 0.033 secs). :capsule:compileJava UP-TO-DATE -:capsule:compileJava (Thread[#64,Task worker for ':',5,main]) completed. Took 0.127 secs. -:capsule:processResources (Thread[#64,Task worker for ':',5,main]) started. +:capsule:compileJava (Thread[#84,Task worker for ':',5,main]) completed. Took 0.069 secs. +:capsule:processResources (Thread[#84,Task worker for ':',5,main]) started. :capsule:processResources Putting task artifact state for task ':capsule:processResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/main/resources', not found Skipping task ':capsule:processResources' as it has no source files and no previous output files. :capsule:processResources NO-SOURCE -:capsule:processResources (Thread[#64,Task worker for ':',5,main]) completed. Took 0.01 secs. -:capsule:classes (Thread[#64,Task worker for ':',5,main]) started. +:capsule:processResources (Thread[#84,Task worker for ':',5,main]) completed. Took 0.004 secs. +:capsule:classes (Thread[#84,Task worker for ':',5,main]) started. :capsule:classes Skipping task ':capsule:classes' as it has no actions. :capsule:classes UP-TO-DATE -:capsule:classes (Thread[#64,Task worker for ':',5,main]) completed. Took 0.002 secs. -:capsule:debianMavenPom (Thread[#64,Task worker for ':',5,main]) started. +:capsule:classes (Thread[#84,Task worker for ':',5,main]) completed. Took 0.001 secs. +:capsule:debianMavenPom (Thread[#84,Task worker for ':',5,main]) started. :capsule:debianMavenPom Putting task artifact state for task ':capsule:debianMavenPom' into context took 0.0 secs. Skipping task ':capsule:debianMavenPom' as it is up-to-date (took 0.003 secs). :capsule:debianMavenPom UP-TO-DATE -:capsule:debianMavenPom (Thread[#64,Task worker for ':',5,main]) completed. Took 0.009 secs. -:capsule:jar (Thread[#64,Task worker for ':',5,main]) started. +:capsule:debianMavenPom (Thread[#84,Task worker for ':',5,main]) completed. Took 0.005 secs. +:capsule:jar (Thread[#84,Task worker for ':',5,main]) started. :capsule:jar Putting task artifact state for task ':capsule:jar' into context took 0.0 secs. -Skipping task ':capsule:jar' as it is up-to-date (took 0.009 secs). +Skipping task ':capsule:jar' as it is up-to-date (took 0.005 secs). :capsule:jar UP-TO-DATE -:capsule:jar (Thread[#64,Task worker for ':',5,main]) completed. Took 0.019 secs. -:capsule:processTestResources (Thread[#64,Task worker for ':',5,main]) started. +:capsule:jar (Thread[#84,Task worker for ':',5,main]) completed. Took 0.011 secs. +:capsule:processTestResources (Thread[#84,Task worker for ':',5,main]) started. :capsule:processTestResources Putting task artifact state for task ':capsule:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/resources', not found Skipping task ':capsule:processTestResources' as it has no source files and no previous output files. :capsule:processTestResources NO-SOURCE -:capsule:processTestResources (Thread[#64,Task worker for ':',5,main]) completed. Took 0.006 secs. -Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.173 secs). +:capsule:processTestResources (Thread[#84,Task worker for ':',5,main]) completed. Took 0.002 secs. +Skipping task ':capsule-util:compileJava' as it is up-to-date (took 0.083 secs). :capsule-util:compileJava UP-TO-DATE -:capsule-util:compileJava (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 0.221 secs. -:capsule-util:processResources (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule-util:compileJava (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 0.115 secs. +:capsule-util:processResources (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule-util:processResources Putting task artifact state for task ':capsule-util:processResources' into context took 0.0 secs. -Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.02 secs). +Skipping task ':capsule-util:processResources' as it is up-to-date (took 0.006 secs). :capsule-util:processResources UP-TO-DATE -:capsule-util:processResources (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 0.03 secs. -:capsule-util:classes (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule-util:processResources (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 0.009 secs. +:capsule-util:classes (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule-util:classes Skipping task ':capsule-util:classes' as it has no actions. :capsule-util:classes UP-TO-DATE -:capsule-util:classes (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 0.016 secs. -:capsule-util:debianMavenPom (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule-util:classes (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 0.002 secs. +:capsule-util:debianMavenPom (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule-util:debianMavenPom Putting task artifact state for task ':capsule-util:debianMavenPom' into context took 0.0 secs. -Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.004 secs). +Skipping task ':capsule-util:debianMavenPom' as it is up-to-date (took 0.002 secs). :capsule-util:debianMavenPom UP-TO-DATE -:capsule-util:debianMavenPom (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 0.014 secs. -:capsule-util:jar (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule-util:debianMavenPom (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 0.004 secs. +:capsule-util:jar (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule-util:jar Putting task artifact state for task ':capsule-util:jar' into context took 0.0 secs. -Skipping task ':capsule-util:jar' as it is up-to-date (took 0.016 secs). +Skipping task ':capsule-util:jar' as it is up-to-date (took 0.005 secs). :capsule-util:jar UP-TO-DATE -:capsule-util:jar (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 0.028 secs. -:capsule:compileTestJava (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule-util:jar (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 0.008 secs. +:capsule:compileTestJava (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule:compileTestJava Putting task artifact state for task ':capsule:compileTestJava' into context took 0.0 secs. -:capsule-util:compileTestJava (Thread[#64,Task worker for ':',5,main]) started. +:capsule-util:compileTestJava (Thread[#84,Task worker for ':',5,main]) started. :capsule-util:compileTestJava Putting task artifact state for task ':capsule-util:compileTestJava' into context took 0.0 secs. -Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@79fc6354 +Creating new cache for metadata-2.36/module-metadata, path /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/.gradle/caches/modules-2/metadata-2.36/module-metadata.bin, access org.gradle.cache.internal.DefaultCacheAccess@51f93f66 Loading the Maven rules... Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x - Replacing junit:junit:jar:4.12 -> junit:junit:jar:4.x Replacing org.truth0:truth:jar:0.23 -> com.google.truth:truth:jar:debian - Replacing org.truth0:truth:jar:0.23 -> com.google.truth:truth:jar:debian - Passing through com.google.truth:truth-parent:jar:debian Passing through com.google.truth:truth-parent:jar:debian + Replacing org.truth0:truth:jar:0.23 -> com.google.truth:truth:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Replacing com.google.jimfs:jimfs:jar:1.1 -> com.google.jimfs:jimfs:jar:debian Passing through com.google.jimfs:jimfs-parent:jar:debian @@ -1490,20 +1524,21 @@ Passing through com.google.guava:guava-parent:jar:debian Passing through com.google.guava:guava-parent:jar:debian Passing through org.jsr-305:jsr305:jar:0.x + Passing through org.jsr-305:jsr305:jar:0.x Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_annotations:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian Passing through com.google.errorprone:error_prone_parent:jar:debian -Up-to-date check for task ':capsule-util:compileTestJava' took 1.536 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:compileTestJava' took 2.219 secs. It is not up-to-date because: No history is available. -All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. -Up-to-date check for task ':capsule:compileTestJava' took 1.553 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:compileTestJava' took 2.221 secs. It is not up-to-date because: No history is available. All input files are considered out-of-date for incremental task ':capsule:compileTestJava'. +All input files are considered out-of-date for incremental task ':capsule-util:compileTestJava'. Use of target 1.7 is no longer supported, switching to 8 -Use of source 1.7 is no longer supported, switching to 8 Use of target 1.7 is no longer supported, switching to 8 Use of source 1.7 is no longer supported, switching to 8 +Use of source 1.7 is no longer supported, switching to 8 Compiling with JDK Java compiler API. Compiling with JDK Java compiler API. warning: [options] source value 8 is obsolete and will be removed in a future release @@ -1513,19 +1548,19 @@ warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. 3 warnings -:capsule-util:compileTestJava (Thread[#64,Task worker for ':',5,main]) completed. Took 3.804 secs. -:capsule-util:processTestResources (Thread[#64,Task worker for ':',5,main]) started. +:capsule-util:compileTestJava (Thread[#84,Task worker for ':',5,main]) completed. Took 3.949 secs. +:capsule-util:processTestResources (Thread[#84,Task worker for ':',5,main]) started. :capsule-util:processTestResources Putting task artifact state for task ':capsule-util:processTestResources' into context took 0.0 secs. file or directory '/build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/src/test/resources', not found Skipping task ':capsule-util:processTestResources' as it has no source files and no previous output files. :capsule-util:processTestResources NO-SOURCE -:capsule-util:processTestResources (Thread[#64,Task worker for ':',5,main]) completed. Took 0.004 secs. -:capsule-util:testClasses (Thread[#64,Task worker for ':',5,main]) started. +:capsule-util:processTestResources (Thread[#84,Task worker for ':',5,main]) completed. Took 0.008 secs. +:capsule-util:testClasses (Thread[#84,Task worker for ':',5,main]) started. :capsule-util:testClasses Skipping task ':capsule-util:testClasses' as it has no actions. -:capsule-util:testClasses (Thread[#64,Task worker for ':',5,main]) completed. Took 0.001 secs. -:capsule-util:test (Thread[#64,Task worker for ':',5,main]) started. +:capsule-util:testClasses (Thread[#84,Task worker for ':',5,main]) completed. Took 0.0 secs. +:capsule-util:test (Thread[#84,Task worker for ':',5,main]) started. :capsule-util:test Putting task artifact state for task ':capsule-util:test' into context took 0.0 secs. Replacing org.jacoco:org.jacoco.agent:jar:0.7.9 -> org.jacoco:org.jacoco.agent:jar:debian @@ -1535,30 +1570,26 @@ Note: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/src/test/java/MyCapsule.java uses unchecked or unsafe operations. Note: Recompile with -Xlint:unchecked for details. 3 warnings -:capsule:compileTestJava (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 3.973 secs. -:capsule:testClasses (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule:compileTestJava (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 4.285 secs. +:capsule:testClasses (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule:testClasses Skipping task ':capsule:testClasses' as it has no actions. -:capsule:testClasses (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 0.0 secs. -:capsule:test (Thread[#74,Task worker for ':' Thread 11,5,main]) started. +:capsule:testClasses (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 0.0 secs. +:capsule:test (Thread[#93,Task worker for ':' Thread 10,5,main]) started. :capsule:test Putting task artifact state for task ':capsule:test' into context took 0.0 secs. -Up-to-date check for task ':capsule:test' took 0.198 secs. It is not up-to-date because: +Up-to-date check for task ':capsule-util:test' took 0.798 secs. It is not up-to-date because: No history is available. -Up-to-date check for task ':capsule-util:test' took 0.315 secs. It is not up-to-date because: +Up-to-date check for task ':capsule:test' took 0.798 secs. It is not up-to-date because: No history is available. -Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath16708343291016668078txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' -Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath5057386979780651146txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' +Starting process 'Gradle Test Executor 1'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath7632535404126131496txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 1' +Starting process 'Gradle Test Executor 2'. Working directory: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util Command: /usr/lib/jvm/java-21-openjdk-amd64/bin/java -Djava.protocol.handler.pkgs=co.paralleluniverse.filesystem -Dorg.gradle.native=false -javaagent:build/tmp/expandedArchives/org.jacoco.agent-debian.jar_fc1b9679c6e1350d5631161edc643359/jacocoagent.jar=destfile=build/jacoco/test.exec,append=true,dumponexit=true,output=file @/tmp/gradle-worker-classpath12220884779295926484txt -Dfile.encoding=UTF-8 -Duser.country=US -Duser.language=en -Duser.variant -ea worker.org.gradle.process.internal.worker.GradleWorkerMain 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 2' Successfully started process 'Gradle Test Executor 1' -Gradle Test Executor 2 started executing tests. Gradle Test Executor 1 started executing tests. -Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) Running test: Test testExtendClasspath(NextflowLoaderTest) Running test: Test testExtendDeps(NextflowLoaderTest) -Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) - -CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED +Gradle Test Executor 2 started executing tests. Running test: Test testEmbeddedCaplet(CapsuleTest) CapsuleTest > testEmbeddedCaplet SKIPPED @@ -1588,7 +1619,6 @@ CapsuleTest > testMode2 SKIPPED Running test: Test testMode(CapsuleTest) -Gradle Test Executor 1 finished executing tests. CapsuleTest > testMode SKIPPED Running test: Test testMove(CapsuleTest) @@ -1604,6 +1634,7 @@ CapsuleTest > testBootClassPath1 SKIPPED Running test: Test testBootClassPath2(CapsuleTest) +Gradle Test Executor 1 finished executing tests. CapsuleTest > testBootClassPath2 SKIPPED Running test: Test testNativesWithDeps(CapsuleTest) @@ -1686,11 +1717,9 @@ Running test: Test testApplicationArtifact(CapsuleTest) CapsuleTest > testApplicationArtifact SKIPPED -Finished generating test XML results (0.013 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test -Generating HTML test report... -Finished generating test html results (0.06 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test -:capsule:test (Thread[#74,Task worker for ':' Thread 11,5,main]) completed. Took 2.323 secs. -Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) +Running test: Test testWrapperCapsuleAgent(CapsuleAgentTest) + +CapsuleAgentTest > testWrapperCapsuleAgent SKIPPED Running test: Test testAddZip1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip2(co.paralleluniverse.capsule.JarTest) Running test: Test testAddZip3(co.paralleluniverse.capsule.JarTest) @@ -1700,17 +1729,23 @@ Running test: Test testUpdateJar3(co.paralleluniverse.capsule.JarTest) Running test: Test testReallyExecutableJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddPackage2(co.paralleluniverse.capsule.JarTest) +Finished generating test XML results (0.009 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/test-results/test +Generating HTML test report... Running test: Test testAddPackage(co.paralleluniverse.capsule.JarTest) +Finished generating test html results (0.031 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule/build/reports/tests/test Running test: Test testFilePrefix(co.paralleluniverse.capsule.JarTest) Running test: Test testStringPrefix(co.paralleluniverse.capsule.JarTest) Running test: Test testCreateJar(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory1(co.paralleluniverse.capsule.JarTest) Running test: Test testAddDirectory2(co.paralleluniverse.capsule.JarTest) +:capsule:test (Thread[#93,Task worker for ':' Thread 10,5,main]) completed. Took 3.287 secs. +Running test: Test testSimpleExtract(co.paralleluniverse.capsule.CapsuleLauncherTest) +Running test: Test testEnableJMX(co.paralleluniverse.capsule.CapsuleLauncherTest) Gradle Test Executor 2 finished executing tests. -Finished generating test XML results (0.002 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test +Finished generating test XML results (0.181 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/test-results/test Generating HTML test report... -Finished generating test html results (0.005 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test -:capsule-util:test (Thread[#64,Task worker for ':',5,main]) completed. Took 3.132 secs. +Finished generating test html results (0.482 secs) into: /build/reproducible-path/capsule-nextflow-1.1.1+dfsg/capsule-util/build/reports/tests/test +:capsule-util:test (Thread[#84,Task worker for ':',5,main]) completed. Took 4.941 secs. BUILD SUCCESSFUL in 16s 11 actionable tasks: 4 executed, 7 up-to-date @@ -1744,12 +1779,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1559480/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1844930 and its subdirectories -I: Current time: Tue Mar 11 05:07:15 -12 2025 -I: pbuilder-time-stamp: 1741712835 +I: removing directory /srv/workspace/pbuilder/1559480 and its subdirectories +I: Current time: Tue Apr 14 13:34:17 +14 2026 +I: pbuilder-time-stamp: 1776123257