Diff of the two buildlogs: -- --- b1/build.log 2025-03-13 04:15:01.339695858 +0000 +++ b2/build.log 2025-03-13 04:19:32.255474351 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Mar 12 15:53:20 -12 2025 -I: pbuilder-time-stamp: 1741838000 +I: Current time: Thu Apr 16 00:38:05 +14 2026 +I: pbuilder-time-stamp: 1776249485 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -34,52 +34,84 @@ dpkg-source: info: applying gatbCoreCompileMinia.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3352354/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 15 10:38 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='3524d761a9994073a1e64e7ef0c181da' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3352354' - PS1='# ' - PS2='> ' + INVOCATION_ID=fa1a88d546384ecea9d979ae0c046855 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2663392 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9qwPOHUt/pbuilderrc_rSt6 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9qwPOHUt/b1 --logfile b1/build.log gatb-core_1.4.2+dfsg-13.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.9qwPOHUt/pbuilderrc_ajfi --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.9qwPOHUt/b2 --logfile b2/build.log gatb-core_1.4.2+dfsg-13.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3352354/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -317,7 +349,7 @@ Get: 184 http://deb.debian.org/debian trixie/main amd64 libjpeg-dev amd64 1:2.1.5-3.1 [72.0 kB] Get: 185 http://deb.debian.org/debian trixie/main amd64 libhdf5-dev amd64 1.14.5+repack-3 [3165 kB] Get: 186 http://deb.debian.org/debian trixie/main amd64 libjsoncpp-dev amd64 1.9.6-3 [25.0 kB] -Fetched 151 MB in 4s (33.7 MB/s) +Fetched 151 MB in 7s (20.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19801 files and directories currently installed.) @@ -1081,7 +1113,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-13_source.changes +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/gatb-core-1.4.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../gatb-core_1.4.2+dfsg-13_source.changes dpkg-buildpackage: info: source package gatb-core dpkg-buildpackage: info: source version 1.4.2+dfsg-13 dpkg-buildpackage: info: source distribution unstable @@ -1198,8 +1234,8 @@ This warning is for project developers. Use -Wno-dev to suppress it. -- Found Doxygen: /usr/bin/doxygen (found version "1.9.8") found components: doxygen dot --- Configuring done (11.0s) --- Generating done (0.5s) +-- Configuring done (1.8s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1213,7 +1249,7 @@ debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_build -a - cd obj-x86_64-linux-gnu && make -j20 "INSTALL=install --strip-program=true" VERBOSE=1 + cd obj-x86_64-linux-gnu && make -j42 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu//CMakeFiles/progress.marks @@ -1223,68 +1259,116 @@ make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/depend make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/depend make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake "--color=" +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty/CMakeFiles/thirdparty_copy.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build -make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/CMakeFiles/gatbcore-dynamic.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' make -f thirdparty/CMakeFiles/thirdparty_copy.dir/build.make thirdparty/CMakeFiles/thirdparty_copy.dir/build make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build +make -f src/CMakeFiles/gatbcore-dynamic.dir/build.make src/CMakeFiles/gatbcore-dynamic.dir/build make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json -make -f src/CMakeFiles/gatbcore-static.dir/build.make src/CMakeFiles/gatbcore-static.dir/build -[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 1%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o +make[4]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF +[ 0%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/Bank.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankBinary.cpp.o +[ 5%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankSplitter.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o +[ 6%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bcalm_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankAlbum.cpp +[ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o +[ 7%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/Bank.cpp +[ 8%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/bglue_algo.cpp.o +[ 8%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bcalm2/bcalm_algo.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o 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CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankFasta.cpp +[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o +[ 12%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankFasta.cpp.o -c 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CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankHelpers.cpp -[ 3%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o -[ 4%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/bank/impl/BankRandom.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/BooPHF/BooPHF.h /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/BooPHF/ +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp +[ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty/json/json.hpp /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None/json/ +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +[ 17%] Built target thirdparty_copy +[ 17%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp +[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp +[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp +[ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp: In function 'bool gatb::core::bank::impl::checkMagic(FILE*)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:54:11: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 54 | fread (&value, sizeof(value), 1, file); @@ -1301,36 +1385,28 @@ /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankBinary.cpp:453:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 453 | fread (_bufferData->getBuffer(), sizeof( char),block_size, binary_read_file); // read a block of reads into the buffer | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -[ 9%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/GraphUnitigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/IterativeExtensions.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/IterativeExtensions.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/LinkTigs.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/LinkTigs.cpp -[ 10%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/bank/impl/BankRandom.cpp -[ 11%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Simplifications.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include 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/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Traversal.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Terminator.cpp -[ 12%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/debruijn/impl/UnitigsConstructionAlgorithm.cpp.o +[ 18%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Configuration.cpp +[ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp +[ 19%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat 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src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomMinimizerAlgorithm.cpp.o -c 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/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/ConfigurationAlgorithm.cpp /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1349,285 +1425,293 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 15%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/bcalm2/logging.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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+/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] + 608 | std::not1(std::ptr_fun(std::isspace)))); + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +In file included from /usr/include/c++/14/bits/refwrap.h:39, + from /usr/include/c++/14/vector:68, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:24, + from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: +/usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here + 1123 | ptr_fun(_Result (*__x)(_Arg)) + | ^~~~~~~ +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': +/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] + 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); + | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ +/usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here + 1123 | ptr_fun(_Result (*__x)(_Arg)) + | ^~~~~~~ +[ 23%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/ConfigurationAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c 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src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/RepartitionAlgorithm.cpp.o -c 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src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.cpp -[ 18%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o +[ 27%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. 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-/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] - 608 | std::not1(std::ptr_fun(std::isspace)))); - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -In file included from /usr/include/c++/14/bits/refwrap.h:39, - from /usr/include/c++/14/vector:68, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.hpp:24, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:20: -/usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here - 1123 | ptr_fun(_Result (*__x)(_Arg)) - | ^~~~~~~ -[ 32%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::rtrim(std::string&)': -/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:615:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] - 615 | std::not1(std::ptr_fun(std::isspace))).base(), s.end()); - | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -/usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here - 1123 | ptr_fun(_Result (*__x)(_Arg)) - | ^~~~~~~ +[ 51%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp -[ 33%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o +[ 53%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o +[ 57%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization2.cpp.in_64.cpp.o -MF 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_64.cpp.o.d -o 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-I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_96.cpp -[ 39%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Configuration.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization4.cpp.in_96.cpp.o.d -o 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o.d -o 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization3.cpp.in_64.cpp.o +[ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization6.cpp.in_64.cpp.o -MF 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src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/kmer/impl/Model.cpp -[ 46%] 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src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp -[ 54%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -[ 54%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/DnaCoder.cpp.o +[ 75%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None 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src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_64.cpp.o.d -o 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src/CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/compression/HeaderCoder.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/compression/HeaderCoder.cpp -[ 56%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization5.cpp.in_96.cpp.o +[ 76%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 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-I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp -[ 68%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp -[ 68%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp -[ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_128.cpp -[ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_32.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1637,7 +1721,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1648,19 +1732,17 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 69%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); | ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~ -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_64.cpp In file included from /usr/include/c++/14/bits/refwrap.h:39, from /usr/include/c++/14/vector:68, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1671,9 +1753,7 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization1.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization1.cpp.in_96.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1683,7 +1763,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1694,10 +1774,6 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 70%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_128.cpp -[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_32.cpp In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] @@ -1719,65 +1795,35 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization10.cpp.in_64.cpp -[ 71%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization10.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization7.cpp.in_96.cpp.o.d -o 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src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o 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/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp +[ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o +[ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp +[ 84%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp +[ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp +[ 85%] Building CXX object src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -Dgatbcore_dynamic_EXPORTS -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-dynamic.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1787,7 +1833,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1798,7 +1844,7 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1808,7 +1854,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_128.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_32.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1819,9 +1865,7 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization8.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1831,7 +1875,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1842,7 +1886,7 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:3: +In file included from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:3: /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp: In function 'std::string& gatb::core::debruijn::impl::ltrim(std::string&)': /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/GraphUnitigs.cpp:608:45: warning: 'std::pointer_to_unary_function<_Arg, _Result> std::ptr_fun(_Result (*)(_Arg)) [with _Arg = int; _Result = int]' is deprecated: use 'std::function' instead [-Wdeprecated-declarations] 608 | std::not1(std::ptr_fun(std::isspace)))); @@ -1852,7 +1896,7 @@ from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Graph.hpp:30, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.hpp:25, from /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src/gatb/debruijn/impl/Simplifications.cpp:40, - from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_96.cpp:1: + from /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization8.cpp.in_64.cpp:1: /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ @@ -1863,124 +1907,116 @@ /usr/include/c++/14/bits/stl_function.h:1123:5: note: declared here 1123 | ptr_fun(_Result (*__x)(_Arg)) | ^~~~~~~ -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_128.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_128.cpp -[ 84%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_32.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_32.cpp -[ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_64.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_64.cpp -[ 85%] Building CXX object src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT src/CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/template/TemplateSpecialization9.cpp.in_96.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src/gatb/template/TemplateSpecialization9.cpp.in_96.cpp -[ 85%] Linking CXX shared library ../lib/None/libgatbcore.so +[ 86%] Linking CXX static library ../lib/None/libgatbcore.a +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 +/usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/Bank.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" 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/usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm -make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[ 98%] Built target leon -[ 98%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/misc/TestMisc.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/misc/TestMisc.cpp -[ 98%] Linking CXX executable ../bin/None/dbginfo -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 -[100%] Building CXX object test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/c++ -I/usr/include/hdf5/serial -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include -I/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/include/None -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/src -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/thirdparty -I/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -Wno-invalid-offsetof -MD -MT test/unit/CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -MF CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o.d -o CMakeFiles/gatb-core-cppunit.dir/src/tools/storage/TestStorage.cpp.o -c /build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core/test/unit/src/tools/storage/TestStorage.cpp [100%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dbginfo.dir/link.d CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/leon.dir/link.d CMakeFiles/leon.dir/leon.cpp.o -o ../bin/None/leon -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' -[100%] Built target dbginfo +[100%] Built target leon +[100%] Linking CXX executable ../bin/None/dbginfo +cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dbgh5.dir/link.d CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target dbgh5 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/dbginfo.dir/link.d CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo -Wl,-rpath,/usr/lib/x86_64-linux-gnu/hdf5/serial: ../lib/None/libgatbcore.a -ldl -lpthread -lz /usr/lib/x86_64-linux-gnu/hdf5/serial/libhdf5.so /usr/lib/x86_64-linux-gnu/libcrypto.so /usr/lib/x86_64-linux-gnu/libcurl.so /usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm +make[4]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' +[100%] Built target dbginfo [100%] Linking CXX executable ../../bin/None/gatb-core-cppunit cd /build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu/test/unit && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatb-core-cppunit.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/gatb-core-1.4.2+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now 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/usr/lib/x86_64-linux-gnu/libpthread.a /usr/lib/x86_64-linux-gnu/libsz.so /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libdl.a -lm /usr/lib/x86_64-linux-gnu/libcppunit.so @@ -2005,7 +2041,7 @@ Nothing to do here make[1]: Leaving directory '/build/reproducible-path/gatb-core-1.4.2+dfsg' dh_auto_install -O--sourcedirectory=gatb-core -Ngatb-core-testdata - cd obj-x86_64-linux-gnu && make -j20 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" + cd obj-x86_64-linux-gnu && make -j42 install DESTDIR=/build/reproducible-path/gatb-core-1.4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/gatb-core-1.4.2+dfsg/gatb-core -B/build/reproducible-path/gatb-core-1.4.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall @@ -2016,122 +2052,122 @@ /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/Makefile --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/CMakeLists.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/histo2D.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/protos/MicroSNP.cpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/bank --- Installing: 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Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage3.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage5.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage7.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage9.cpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/storage/storage1.cpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/share/doc/gatb-core/examples/tools/multithreading2.cpp +-- Installing: 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/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/./README.txt -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.a -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 @@ -2139,87 +2175,54 @@ -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2 +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ographBin.h +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ThreadPool.h -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/unionFind.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/logging.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/binSeq.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bcalm_algo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/ograph.h --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bcalm2/bglue_algo.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/Sequence.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IAlphabet.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/api/IBank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankStrings.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankBinary.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Alphabet.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Bank.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankRandom.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankFasta.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/AbstractBank.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankAlbum.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankSplitter.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/Banks.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankConverterAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/bank/impl/BankComposite.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.pri --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/template +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/gatb_core.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api @@ -2228,130 +2231,163 @@ -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Iterable.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/api/Bag.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagPartition.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BooPHF.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IterableHelpers.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BagCache.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Bloom.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/ContainerSet.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/IteratorFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/BloomGroup.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionAbstract.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/OAHash.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/Hash16.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/CollectionCache.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/collections/impl/MapMPHF.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/HeaderCoder.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/RangeCoder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/Leon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/DnaCoder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/compression/CompressionUtils.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt1.pri -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/Integer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/LargeInt2.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt32.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/FastMinimizer.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt128.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt16.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt8.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/math/NativeInt64.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IOptionsParser.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Macros.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Vector.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IHistogram.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Data.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Abundance.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/StringsRepository.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Range.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/IProperty.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/api/Enums.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Algorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/LibraryInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/HostInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Progress.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Histogram.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Pool.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/TimeInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Property.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tokenizer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Tool.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/OptionsParser.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/Stringify.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/api/ICell.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageTools.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Cell.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageHDF5.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/CollectionHDF5Patch.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/StorageFile.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/storage/impl/Storage.tpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/api/IContainerNode.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ExtremityInfo.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/GraphUnitigs.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Simplifications.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Frontline.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/BranchingAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/NodesDeleter.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/ContainerNode.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Terminator.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/UnitigsConstructionAlgorithm.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/dag_vector.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/IterativeExtensions.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Graph.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/LinkTigs.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/rank_vector.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/debruijn/impl/Traversal.hpp --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/template +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/XmlReader.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/misc/impl/StringLine.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/IObserver.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/Iterator.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/api/ICommand.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Observer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/Command.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/tools/designpattern/impl/IteratorHelpers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/ICountProcessor.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/api/IModel.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Sequence2SuperKmer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Configuration.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/RepartitionAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorCutoff.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessor.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/LinearCounter.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomMinimizerAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmers.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/ConfigurationAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithmFactory.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/DebloomAlgorithm.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorDump.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorAbstract.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorSolidity.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorHistogram.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/SortingCountAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartiInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/Model.pri +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/MPHFAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorChain.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BankKmerIterator.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/CountProcessorProxy.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/PartitionsCommand.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomBuilder.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/kmer/impl/BloomAlgorithm.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ITime.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IThread.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/types.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISystemInfo.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IFileSystem.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/IMemory.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/ISmartPointer.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/Exception.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config_sha1.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/TimeCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadLinux.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/MemoryCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/System.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemLinux.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemMacos.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/FileSystemCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/SystemInfoCommon.hpp +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/impl/ThreadMacos.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/include/gatb/system/api/config.hpp -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test/gatb-core-cppunit" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/celegans_reads.h5 --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq.gz --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample2.fa -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq.leon-ref --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/query.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads2.fa +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon2.fastq.leon-ref --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/microsnp.fa --- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/README.md +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/album.txt +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/leon1.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample.fastq +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads1_list_ids.txt +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/sample1.fa.gz +-- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/test//db/reads3.fa.gz -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5 -- Set non-toolchain portion of runtime path of "/build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbgh5" to "" -- Installing: /build/reproducible-path/gatb-core-1.4.2+dfsg/debian/tmp/usr/bin/dbginfo @@ -2411,7 +2447,7 @@ dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgatbcore3/DEBIAN/symbols doesn't match completely debian/libgatbcore3.symbols.amd64 --- debian/libgatbcore3.symbols.amd64 (libgatbcore3_1.4.2+dfsg-13_amd64) -+++ dpkg-gensymbols5nhLKz 2025-03-13 04:13:43.479545389 +0000 ++++ dpkg-gensymbolsb84lHc 2026-04-15 10:42:06.949371305 +0000 @@ -48,7 +48,7 @@ _ZN10DnaEncoderD1Ev@Base 1.4.2 _ZN10DnaEncoderD2Ev@Base 1.4.2 @@ -5446,27 +5482,27 @@ diversion by libc6 from: /lib64/ld-linux-x86-64.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib64/ld-linux-x86-64.so.2.usr-is-merged -dpkg-shlibdeps: warning: symbol gzerror used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Gopen2 used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Dvlen_reclaim used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateEnd used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT16_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Aget_space used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Dclose used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol H5Screate_simple used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries -dpkg-shlibdeps: warning: symbol deflateInit_ used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: symbol gzprintf used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Aopen used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT16_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Adelete used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Dget_space used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateInit_ used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol gzread used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5T_NATIVE_UINT32_g used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol inflateEnd used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries +dpkg-shlibdeps: warning: symbol H5Tcopy used by debian/libgatbcore3/usr/lib/x86_64-linux-gnu/libgatbcore.so.3 found in none of the libraries dpkg-shlibdeps: warning: 55 other similar warnings have been skipped (use -v to see them all) dh_installdeb -O--sourcedirectory=gatb-core dh_gencontrol -O--sourcedirectory=gatb-core dh_md5sums -O--sourcedirectory=gatb-core dh_builddeb -O--sourcedirectory=gatb-core +dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-13_amd64.deb'. dpkg-deb: building package 'gatb-core' in '../gatb-core_1.4.2+dfsg-13_amd64.deb'. -dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-13_all.deb'. -dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-13_amd64.deb'. dpkg-deb: building package 'libgatbcore3' in '../libgatbcore3_1.4.2+dfsg-13_amd64.deb'. dpkg-deb: building package 'libgatbcore3-dbgsym' in '../libgatbcore3-dbgsym_1.4.2+dfsg-13_amd64.deb'. -dpkg-deb: building package 'gatb-core-dbgsym' in '../gatb-core-dbgsym_1.4.2+dfsg-13_amd64.deb'. +dpkg-deb: building package 'libgatbcore-dev' in '../libgatbcore-dev_1.4.2+dfsg-13_amd64.deb'. +dpkg-deb: building package 'gatb-core-testdata' in '../gatb-core-testdata_1.4.2+dfsg-13_all.deb'. dpkg-genbuildinfo --build=binary -O../gatb-core_1.4.2+dfsg-13_amd64.buildinfo dpkg-genchanges --build=binary -O../gatb-core_1.4.2+dfsg-13_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -5474,12 +5510,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2663392/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3352354 and its subdirectories -I: Current time: Wed Mar 12 16:15:00 -12 2025 -I: pbuilder-time-stamp: 1741839300 +I: removing directory /srv/workspace/pbuilder/2663392 and its subdirectories +I: Current time: Thu Apr 16 00:42:31 +14 2026 +I: pbuilder-time-stamp: 1776249751