Diff of the two buildlogs: -- --- b1/build.log 2025-03-10 17:06:46.943568866 +0000 +++ b2/build.log 2025-03-10 17:08:13.459687020 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Mar 10 05:02:47 -12 2025 -I: pbuilder-time-stamp: 1741626167 +I: Current time: Mon Apr 13 13:29:46 +14 2026 +I: pbuilder-time-stamp: 1776036586 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying change_Configurator_to_avoid_drmaa.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4176300/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/D01_modify_environment starting +debug: Running on ionos5-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 12 23:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='1bda1aeb343a42e182a06e42eb74c635' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4176300' - PS1='# ' - PS2='> ' + INVOCATION_ID=657bea015828427f883f4636898c4b6d + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=898883 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.E6jwPRN5/pbuilderrc_bY3i --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.E6jwPRN5/b1 --logfile b1/build.log libjaba-client-java_2.2.0-2.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.E6jwPRN5/pbuilderrc_iYR7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.E6jwPRN5/b2 --logfile b2/build.log libjaba-client-java_2.2.0-2.dsc' + SUDO_GID=110 + SUDO_UID=105 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4176300/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -442,7 +474,7 @@ Get: 320 http://deb.debian.org/debian trixie/main amd64 libjws-api-java all 1.1-2 [21.2 kB] Get: 321 http://deb.debian.org/debian trixie/main amd64 liblog4j1.2-java all 1.2.17-11 [444 kB] Get: 322 http://deb.debian.org/debian trixie/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] -Fetched 265 MB in 24s (11.3 MB/s) +Fetched 265 MB in 8s (34.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libsystemd-shared:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -1509,8 +1541,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Mar 10 17:05:23 UTC 2025. -Universal Time is now: Mon Mar 10 17:05:23 UTC 2025. +Local time is now: Sun Apr 12 23:30:36 UTC 2026. +Universal Time is now: Sun Apr 12 23:30:36 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libxcb-present0:amd64 (1.17.0-2+b1) ... @@ -1981,7 +2013,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libjaba-client-java-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libjaba-client-java_2.2.0-2_source.changes +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libjaba-client-java-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libjaba-client-java_2.2.0-2_source.changes dpkg-buildpackage: info: source package libjaba-client-java dpkg-buildpackage: info: source version 2.2.0-2 dpkg-buildpackage: info: source distribution unstable @@ -2014,9 +2050,6 @@ warning: [options] source value 8 is obsolete and will be removed in a future release warning: [options] target value 8 is obsolete and will be removed in a future release warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. -./src/compbio/metadata/ChunkHolder.java:92: warning: [removal] Long(long) in Long has been deprecated and marked for removal - return new Long(position + chunk.hashCode()).intValue(); - ^ ./src/compbio/metadata/ValueConstrain.java:169: warning: [removal] Float(float) in Float has been deprecated and marked for removal && new Float(this.getMin().floatValue()).compareTo(val) == 1) { ^ @@ -2029,6 +2062,40 @@ ./src/compbio/metadata/ValueConstrain.java:187: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal && new Integer(this.getMax().intValue()).compareTo(ival) == -1) { ^ +./src/compbio/engine/conf/RunnerConfigMarshaller.java:55: warning: non-varargs call of varargs method with inexact argument type for last parameter; + this(rootClass, null); + ^ + cast to Class for a varargs call + cast to Class[] for a non-varargs call and to suppress this warning +./src/compbio/engine/conf/RunnerConfigMarshaller.java:174: warning: non-varargs call of varargs method with inexact argument type for last parameter; + return read(instream, resultElemType, null); + ^ + cast to Class for a varargs call + cast to Class[] for a non-varargs call and to suppress this warning +./src/compbio/engine/conf/DirectoryManager.java:43: warning: [removal] Long(long) in Long has been deprecated and marked for removal + String longNum = new Long(System.nanoTime()).toString(); + ^ +./src/compbio/engine/Configurator.java:59: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal + return new Boolean(status.trim()).booleanValue(); + ^ +./src/compbio/metadata/ChunkHolder.java:92: warning: [removal] Long(long) in Long has been deprecated and marked for removal + return new Long(position + chunk.hashCode()).intValue(); + ^ +./src/compbio/engine/FilePuller.java:234: warning: [removal] Long(long) in Long has been deprecated and marked for removal + return new Long(this.getDelay(TimeUnit.NANOSECONDS)).compareTo(o + ^ +./src/compbio/engine/client/EngineUtil.java:73: warning: [removal] Long(long) in Long has been deprecated and marked for removal + new Long(System.currentTimeMillis()).toString(), false); + ^ +./src/compbio/engine/client/Util.java:73: warning: [removal] Long(long) in Long has been deprecated and marked for removal + new Long(System.currentTimeMillis()).toString(), false); + ^ +./src/compbio/runner/OptionCombinator.java:177: warning: [removal] Double(double) in Double has been deprecated and marked for removal + return new Double(Util.getRandomNumber(Double.parseDouble(low), Double.parseDouble(high))).toString(); + ^ +./src/compbio/runner/OptionCombinator.java:179: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal + return new Integer(Util.getRandomNumber(Integer.parseInt(low), Integer.parseInt(high))).toString(); + ^ ./src/compbio/data/sequence/Score.java:107: warning: [removal] Float(float) in Float has been deprecated and marked for removal vlist.add(new Float(v)); ^ @@ -2062,12 +2129,6 @@ ./src/compbio/data/sequence/Range.java:94: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal return new Integer(this.to).compareTo(new Integer(o.to)); ^ -./src/compbio/runner/OptionCombinator.java:177: warning: [removal] Double(double) in Double has been deprecated and marked for removal - return new Double(Util.getRandomNumber(Double.parseDouble(low), Double.parseDouble(high))).toString(); - ^ -./src/compbio/runner/OptionCombinator.java:179: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal - return new Integer(Util.getRandomNumber(Integer.parseInt(low), Integer.parseInt(high))).toString(); - ^ ./src/compbio/stat/collector/JobStat.java:36: warning: [removal] Integer(int) in Integer has been deprecated and marked for removal return new Integer(o2.getRuntime()).compareTo(o1.getRuntime()); ^ @@ -2077,31 +2138,6 @@ ./src/compbio/stat/collector/JobStat.java:50: warning: [removal] Long(long) in Long has been deprecated and marked for removal return new Long(o2.resultSize).compareTo(o1.resultSize); ^ -./src/compbio/engine/FilePuller.java:234: warning: [removal] Long(long) in Long has been deprecated and marked for removal - return new Long(this.getDelay(TimeUnit.NANOSECONDS)).compareTo(o - ^ -./src/compbio/engine/conf/DirectoryManager.java:43: warning: [removal] Long(long) in Long has been deprecated and marked for removal - String longNum = new Long(System.nanoTime()).toString(); - ^ -./src/compbio/engine/conf/RunnerConfigMarshaller.java:55: warning: non-varargs call of varargs method with inexact argument type for last parameter; - this(rootClass, null); - ^ - cast to Class for a varargs call - cast to Class[] for a non-varargs call and to suppress this warning -./src/compbio/engine/conf/RunnerConfigMarshaller.java:174: warning: non-varargs call of varargs method with inexact argument type for last parameter; - return read(instream, resultElemType, null); - ^ - cast to Class for a varargs call - cast to Class[] for a non-varargs call and to suppress this warning -./src/compbio/engine/Configurator.java:59: warning: [removal] Boolean(String) in Boolean has been deprecated and marked for removal - return new Boolean(status.trim()).booleanValue(); - ^ -./src/compbio/engine/client/Util.java:73: warning: [removal] Long(long) in Long has been deprecated and marked for removal - new Long(System.currentTimeMillis()).toString(), false); - ^ -./src/compbio/engine/client/EngineUtil.java:73: warning: [removal] Long(long) in Long has been deprecated and marked for removal - new Long(System.currentTimeMillis()).toString(), false); - ^ Note: Some input files use or override a deprecated API. Note: Recompile with -Xlint:deprecation for details. Note: Some input files use unchecked or unsafe operations. @@ -2200,7 +2236,7 @@ dh_link jh_installlibs jh_classpath -Duplicate specification "version|V" for option "V" +Duplicate specification "V:s" for option "V" jh_manifest jh_depends dh_strip_nondeterminism @@ -2219,12 +2255,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/898883/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4176300 and its subdirectories -I: Current time: Mon Mar 10 05:06:41 -12 2025 -I: pbuilder-time-stamp: 1741626401 +I: removing directory /srv/workspace/pbuilder/898883 and its subdirectories +I: Current time: Mon Apr 13 13:31:10 +14 2026 +I: pbuilder-time-stamp: 1776036670