Diff of the two buildlogs: -- --- b1/build.log 2025-08-03 04:51:18.630879684 +0000 +++ b2/build.log 2025-08-03 05:03:40.115811248 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Sep 4 23:07:29 -12 2026 -I: pbuilder-time-stamp: 1788606449 +I: Current time: Sun Aug 3 18:51:21 +14 2025 +I: pbuilder-time-stamp: 1754196681 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying skip_gsd_tests.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3622005/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/D01_modify_environment starting +debug: Running on ionos11-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 3 04:51 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='7f460500f6d641b7ae0901a0540ca3f5' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3622005' - PS1='# ' - PS2='> ' + INVOCATION_ID=20d0f2305a9946e5b7e2acec6fb8734a + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3315163 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.30zs968G/pbuilderrc_sLKi --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.30zs968G/b1 --logfile b1/build.log mdanalysis_2.9.0-12.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://213.165.73.152:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.30zs968G/pbuilderrc_VoA7 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.30zs968G/b2 --logfile b2/build.log mdanalysis_2.9.0-12.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://46.16.76.132:3128 I: uname -a - Linux ionos15-amd64 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3622005/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -444,7 +476,7 @@ Get: 264 http://deb.debian.org/debian trixie/main amd64 python3-sphinx-sitemap all 2.6.0-1 [8508 B] Get: 265 http://deb.debian.org/debian trixie/main amd64 python3-sphinxcontrib.bibtex all 2.6.2-1 [32.4 kB] Get: 266 http://deb.debian.org/debian trixie/main amd64 python3-tqdm all 4.67.1-5 [90.8 kB] -Fetched 193 MB in 3s (62.8 MB/s) +Fetched 193 MB in 8s (23.0 MB/s) Preconfiguring packages ... Selecting previously unselected package fonts-lato. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) @@ -1300,8 +1332,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sat Sep 5 11:08:13 UTC 2026. -Universal Time is now: Sat Sep 5 11:08:13 UTC 2026. +Local time is now: Sun Aug 3 04:57:14 UTC 2025. +Universal Time is now: Sun Aug 3 04:57:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1550,7 +1582,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mdanalysis-2.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mdanalysis_2.9.0-12_source.changes +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mdanalysis-2.9.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mdanalysis_2.9.0-12_source.changes dpkg-buildpackage: info: source package mdanalysis dpkg-buildpackage: info: source version 2.9.0-12 dpkg-buildpackage: info: source distribution unstable @@ -1670,8 +1706,8 @@ ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). - This deprecation is overdue, please update your project and remove deprecated - calls to avoid build errors in the future. + By 2026-Feb-18, you need to update your project and remove deprecated calls + or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** @@ -1708,225 +1744,225 @@ running build running build_py creating build/lib.linux-x86_64-cpython-313/MDAnalysis -copying MDAnalysis/version.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis -copying MDAnalysis/authors.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis -copying MDAnalysis/units.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/due.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis +copying MDAnalysis/authors.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis +copying MDAnalysis/version.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis +copying MDAnalysis/units.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis copying MDAnalysis/exceptions.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source copying doc/sphinx/source/conf.py -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/tests -copying MDAnalysis/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/tests -copying MDAnalysis/tests/datafiles.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/tests +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/accessors.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/topology.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/universe.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/groups.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/selection.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/_get_readers.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core creating build/lib.linux-x86_64-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/pymol.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/gromacs.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/vmd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections -copying MDAnalysis/selections/jmol.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections copying MDAnalysis/selections/charmm.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/chain.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/null.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/memory.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/default_guesser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/tables.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser -copying MDAnalysis/guesser/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser +copying MDAnalysis/selections/pymol.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/jmol.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections +copying MDAnalysis/selections/vmd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/selections +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/_distopia.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/mdamath.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/transformations.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/util.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/distances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/correlations.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/lib/log.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/tests +copying MDAnalysis/tests/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/tests +copying MDAnalysis/tests/datafiles.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/tests +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary +copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary creating build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/guessers.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/DLPolyParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/MOL2Parser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/TXYZParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/ITPParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/XYZParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/ParmEdParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/tables.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/TOPParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/CRDParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/HoomdXMLParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/TPRParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/MMTFParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/GSDParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/GROParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/PDBParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/GMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/MinimalParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology copying MDAnalysis/topology/ExtendedPDBParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/PDBQTParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/LAMMPSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -copying MDAnalysis/topology/guessers.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization -copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization -copying MDAnalysis/visualization/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization -copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/XVG.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary -copying MDAnalysis/auxiliary/EDR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/_get_readers.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/topologyattrs.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/topology.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/groups.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/universe.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/topologyobjects.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/selection.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core -copying MDAnalysis/core/accessors.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/core +copying MDAnalysis/topology/FHIAIMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/PSFParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/PQRParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/DMSParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/GROParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +copying MDAnalysis/topology/tables.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/default_guesser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser +copying MDAnalysis/guesser/tables.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser creating build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/wrap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/fit.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/nojump.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/translate.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/wrap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/rotate.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/fit.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations copying MDAnalysis/transformations/boxdimensions.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations -copying MDAnalysis/transformations/translate.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations +copying MDAnalysis/transformations/positionaveraging.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/align.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/psa.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/backends.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/rms.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/contacts.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/bat.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/msd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/polymer.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/psa.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/rdf.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/density.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/contacts.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/pca.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/results.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/diffusionmap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/rms.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/msd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/align.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/backends.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/dihedrals.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/lineardensity.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/helix_analysis.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/results.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/pca.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/rdf.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/gnm.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/atomicdistances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis copying MDAnalysis/analysis/distances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/nuclinfo.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/nucleicacids.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/leaflet.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/bat.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -copying MDAnalysis/analysis/waterdynamics.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/correlations.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/picklable_file_io.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/pkdtree.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/NeighborSearch.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/mdamath.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/_distopia.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/transformations.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/distances.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/util.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/lib/log.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib +copying MDAnalysis/analysis/dielectric.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization +copying MDAnalysis/visualization/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization +copying MDAnalysis/visualization/streamlines_3D.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization +copying MDAnalysis/visualization/streamlines.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization creating build/lib.linux-x86_64-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters -copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/RDKit.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/ParmEd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/OpenMM.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/ParmEdParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/OpenMMParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters +copying MDAnalysis/converters/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters copying MDAnalysis/converters/RDKitParser.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/converters +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRJ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/MMTF.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/null.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/NAMDBIN.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GRO.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/GSD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TNG.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/chemfiles.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XYZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DLPoly.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/FHIAIMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/chain.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/ParmEd.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TXYZ.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XTC.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/INPCRD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/base.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/MOL2.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DMS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/CRD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/core.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/TRC.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/H5MD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/DCD.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/LAMMPS.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PDBQT.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/XDR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/memory.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PDB.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/PQR.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include +copying MDAnalysis/lib/include/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats +copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis +copying MDAnalysis/lib/libmdanalysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/include/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations +copying MDAnalysis/lib/src/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations creating build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr +copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/setting.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr copying MDAnalysis/topology/tpr/utils.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/obj.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr -copying MDAnalysis/topology/tpr/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp +copying MDAnalysis/analysis/dssp/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/dssp.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp copying MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp -copying MDAnalysis/analysis/dssp/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/similarity.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/confdistmatrix.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore copying MDAnalysis/analysis/encore/bootstrap.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/covariance.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data -copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data -copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy -copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy -copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/encore/utils.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds -copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds copying MDAnalysis/analysis/hbonds/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds +copying MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds +copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds +copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds copying MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds -copying MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds -copying MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data +copying MDAnalysis/analysis/data/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data +copying MDAnalysis/analysis/data/filenames.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hole2 copying MDAnalysis/analysis/hole2/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hole2 +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/legacy/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy +copying MDAnalysis/analysis/legacy/x3dna.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction copying MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/cluster.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering copying MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/formats/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include -copying MDAnalysis/lib/include/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis -copying MDAnalysis/lib/libmdanalysis/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations -copying MDAnalysis/lib/src/transformations/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include -copying MDAnalysis/lib/formats/include/__init__.py -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include running egg_info creating MDAnalysis.egg-info writing MDAnalysis.egg-info/PKG-INFO @@ -2012,8 +2048,8 @@ adding license file 'AUTHORS' writing manifest file 'MDAnalysis.egg-info/SOURCES.txt' copying doc/README -> build/lib.linux-x86_64-cpython-313/doc -copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data copying MDAnalysis/analysis/data/janin_ref_data.npy -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data +copying MDAnalysis/analysis/data/rama_ref_data.npy -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data copying doc/sphinx/Makefile -> build/lib.linux-x86_64-cpython-313/doc/sphinx copying doc/sphinx/source/index.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source copying doc/sphinx/source/references.bib -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source @@ -2045,6 +2081,15 @@ copying doc/sphinx/source/documentation_pages/units.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/version.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages copying doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/accessors.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/groups.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/selection.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/topology.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +copying doc/sphinx/source/documentation_pages/core/universe.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections @@ -2052,42 +2097,26 @@ copying doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections copying doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates -copying doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/log.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +copying doc/sphinx/source/documentation_pages/lib/util.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary +copying doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology @@ -2117,26 +2146,11 @@ copying doc/sphinx/source/documentation_pages/topology/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/tables.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology copying doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization -copying doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -copying doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/accessors.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/groups.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/selection.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/topology.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core -copying doc/sphinx/source/documentation_pages/core/universe.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules +copying doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations @@ -2146,11 +2160,6 @@ copying doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations copying doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules -copying doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/align.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis @@ -2187,25 +2196,55 @@ copying doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis copying doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/distances.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/log.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib -copying doc/sphinx/source/documentation_pages/lib/util.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization +copying doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters copying doc/sphinx/source/documentation_pages/converters/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +copying doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates +creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats +copying doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats +copying doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore copying doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore @@ -2216,12 +2255,6 @@ copying doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy copying doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy -creating build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats -copying doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats -copying doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats -copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates -copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates copying MDAnalysis/lib/_augment.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_augment.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/_cutil.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib @@ -2236,20 +2269,10 @@ copying MDAnalysis/lib/nsgrid.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/qcprot.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib copying MDAnalysis/lib/qcprot.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib -copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore -copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction -copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering -copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src -copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include -copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src -copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src -creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include -copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include +copying MDAnalysis/coordinates/timestep.cpp -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/timestep.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/coordinates/timestep.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates +copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include copying MDAnalysis/lib/formats/cython_util.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/cython_util.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/cython_util.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats @@ -2259,16 +2282,7 @@ copying MDAnalysis/lib/formats/libmdaxdr.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libmdaxdr.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats copying MDAnalysis/lib/formats/libmdaxdr.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats -copying MDAnalysis/lib/include/calc_distances.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include copying MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis -copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations -copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations -copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations -copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src -copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src copying MDAnalysis/lib/formats/include/endianswap.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/fastio.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/readdcd.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include @@ -2277,6 +2291,28 @@ copying MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include copying MDAnalysis/lib/formats/include/xtc_seek.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include +copying MDAnalysis/lib/formats/src/trr_seek.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xdrfile.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/formats/src/xtc_seek.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src +copying MDAnalysis/lib/src/transformations/AUTHOR -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations +copying MDAnalysis/lib/src/transformations/LICENCE -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations +copying MDAnalysis/lib/src/transformations/transformations.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations +copying MDAnalysis/analysis/encore/cutils.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/cutils.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore +copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction +copying MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering +copying MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include +copying MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src +copying MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include +copying MDAnalysis/analysis/encore/clustering/include/ap.h -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include +creating build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src +copying MDAnalysis/analysis/encore/clustering/src/ap.c -> build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src running build_ext building 'MDAnalysis.lib.formats.libdcd' extension creating build/temp.linux-x86_64-cpython-313/MDAnalysis/lib/formats @@ -2432,512 +2468,512 @@ creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/doc creating build/bdist.linux-x86_64/wheel/doc/sphinx +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/Makefile -> build/bdist.linux-x86_64/wheel/./doc/sphinx creating build/bdist.linux-x86_64/wheel/doc/sphinx/source -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/index.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/conf.py -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/references.bib -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/index.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/images -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/parallelization_time.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/RSMD_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/rama_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/janin_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/msd_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/rama_ref_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/AnalysisBase_parallel.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/RSMD_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/janin_ref_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/rama_ref_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/msd_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/parallelization_time.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/images/janin_demo_plot.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/images creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/references.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/universe.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topology.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/selection.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/groups.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/accessors.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/version.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/pymol.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/gromacs.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/jmol.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/charmm.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections/vmd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/selections -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/units.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/overview.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/lib/formats +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib/formats +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib/formats +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/util.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/log.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MMTFParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TOPParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBQTParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PQRParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/XYZParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/tpr_util.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TXYZParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/LAMMPSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PDBParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/ITPParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/CRDParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/DLPolyParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/tables.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MOL2Parser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/ExtendedPDBParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/DMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/TPRParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GSDParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/guessers.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/GROParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/PSFParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/MinimalParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/HoomdXMLParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/EDR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/XVG.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/auxiliary -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/groups.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/selection.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/accessors.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topologyattrs.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topologyobjects.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/universe.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/topology.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/core -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology/FHIAIMSParser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/topology +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/exceptions.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/references.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/rotate.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/wrap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/nojump.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/fit.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/positionaveraging.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/translate.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/transformations/boxdimensions.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/transformations -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/overview.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/version.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/default_guesser.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/tables.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/guesser_modules -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/bat.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/bootstrap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/confdistmatrix.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/dimensionality_reduction.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/density.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/nucleicacids.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/utils.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/similarity.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/clustering.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore/covariance.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/encore copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/atomicdistances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/diffusionmap.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis/legacy -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/legacy -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/results.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/leaflet.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/align.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/pca.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/data.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/contacts.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/rms.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/results.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/polymer.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/parallelization.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/helix_analysis.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/nuclinfo.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/msd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel_deprecated.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/rdf.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/gnm.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dihedrals.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hydrogenbonds.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/psa.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/data.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/wbridge_analysis.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hole2.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/hbond_autocorrel.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/encore.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dssp.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/lib -creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/lib/formats -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libdcd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib/formats -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/formats/libmdaxdr.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib/formats -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/qcprot.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/transformations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/nsgrid.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/mdamath.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances_openmp.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/NeighborSearch.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/util.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/correlations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/picklable_file_io.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/c_distances.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/pkdtree.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/lib/log.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/lib -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/guesser_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/backends.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/analysis/legacy +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/legacy/x3dna.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis/legacy +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/dielectric.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/waterdynamics.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/density.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/lineardensity.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis/align.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/analysis +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/test_streamplot_3D.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines_3D.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/streamlines.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/visualization/testing_streamline.png -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/visualization +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/converters -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/RDKit.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/OpenMM.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/converters/ParmEd.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/converters -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/trajectory_transformations.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/analysis_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/selections.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/topology.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/units.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/auxiliary_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages -copying build/lib.linux-x86_64-cpython-313/doc/sphinx/Makefile -> build/bdist.linux-x86_64/wheel/./doc/sphinx +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/core_modules.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages +creating build/bdist.linux-x86_64/wheel/doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/timestep.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/pickle_readers.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/LAMMPS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRC.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/NAMDBIN.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRJ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DCD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDB.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/base.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GSD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XTC.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XYZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DLPoly.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/DMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/FHIAIMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chain.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GMS.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/XDR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TNG.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/memory.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/core.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MOL2.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/CRD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/chemfiles.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/GRO.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/MMTF.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PDBQT.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/H5MD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/null.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/init.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/PQR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TXYZ.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/TRR.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/documentation_pages/coordinates/INPCRD.rst -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source/documentation_pages/coordinates +copying build/lib.linux-x86_64-cpython-313/doc/sphinx/source/references.bib -> build/bdist.linux-x86_64/wheel/./doc/sphinx/source copying build/lib.linux-x86_64-cpython-313/doc/README -> build/bdist.linux-x86_64/wheel/./doc creating build/bdist.linux-x86_64/wheel/MDAnalysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/version.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/authors.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis -creating build/bdist.linux-x86_64/wheel/MDAnalysis/tests -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/tests -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/tests/datafiles.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/tests +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +creating build/bdist.linux-x86_64/wheel/MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/accessors.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topology.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/universe.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/groups.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/selection.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/_get_readers.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/due.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/selections -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/pymol.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/gromacs.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/vmd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/jmol.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/charmm.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections -creating build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/chain.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/null.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/memory.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates -creating build/bdist.linux-x86_64/wheel/MDAnalysis/guesser -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/default_guesser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/tables.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/units.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/pymol.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/jmol.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/selections/vmd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/selections +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/include +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_distopia.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/mdamath.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/libmdanalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/libmdanalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/transformations.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src +creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/util.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_transformations.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/distances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/correlations.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/log.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +creating build/bdist.linux-x86_64/wheel/MDAnalysis/tests +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/tests/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/tests +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/tests/datafiles.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/tests +creating build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/guessers.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/DLPolyParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MOL2Parser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TXYZParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ITPParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/XYZParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tables.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TOPParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/TPRParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/CRDParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology creating build/bdist.linux-x86_64/wheel/MDAnalysis/topology/tpr +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/setting.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/utils.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/obj.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tpr/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology/tpr -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MMTFParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/HoomdXMLParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GSDParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GROParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PDBParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/MinimalParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/ExtendedPDBParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PDBQTParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/LAMMPSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/guessers.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology -creating build/bdist.linux-x86_64/wheel/MDAnalysis/visualization -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization -creating build/bdist.linux-x86_64/wheel/MDAnalysis/auxiliary -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/XVG.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/auxiliary/EDR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/auxiliary -creating build/bdist.linux-x86_64/wheel/MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/_get_readers.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topologyattrs.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topology.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/groups.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/universe.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/topologyobjects.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/selection.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/core/accessors.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/core -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/due.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/FHIAIMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PSFParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/PQRParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/DMSParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/GROParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/topology/tables.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/topology +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/authors.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/version.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +creating build/bdist.linux-x86_64/wheel/MDAnalysis/guesser +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/default_guesser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/guesser/tables.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/guesser creating build/bdist.linux-x86_64/wheel/MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/wrap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/fit.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/nojump.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/translate.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/wrap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/rotate.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/fit.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/boxdimensions.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/translate.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/exceptions.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/transformations/positionaveraging.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/transformations creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/polymer.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/psa.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/align.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/dssp +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/dssp.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/pydssp_numpy.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dssp/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/dssp -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/rdf.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/psa.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/similarity.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction -creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/include/spe.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/include +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/stochasticproxembed.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/DimensionalityReductionMethod.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/reduce_dimensionality.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore +creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/dimensionality_reduction/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/dimensionality_reduction/src/spe.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/dimensionality_reduction/src copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/confdistmatrix.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/utils.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering -creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering/include copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/include/ap.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/cluster.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering +creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/encore/clustering/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/src/ap.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering/src +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/ClusteringMethod.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/affinityprop.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/bootstrap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/covariance.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/clustering/ClusterCollection.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore/clustering +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/encore/cutils.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/encore -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/density.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/contacts.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/rms.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/msd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/legacy -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/legacy -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/align.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hbonds -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hbonds +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/backends.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/rms.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dihedrals.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/wbridge_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/hbond_autocorrel.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hydrogenbonds/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hydrogenbonds -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/contacts.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/bat.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/msd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/polymer.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/data +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/janin_ref_data.npy -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/filenames.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/data/rama_ref_data.npy -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/data +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/density.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/pca.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/results.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/diffusionmap.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/lineardensity.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/helix_analysis.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/rdf.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/hole2 copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/hole2/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/hole2 -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/pca.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/gnm.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/atomicdistances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/distances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/nuclinfo.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/nucleicacids.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/leaflet.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/bat.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/waterdynamics.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/src/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/transformations.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/AUTHOR -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/src/transformations/LICENCE -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/src/transformations -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/trr_seek.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_trr.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile_xtc.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xdrfile.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/src/xtc_seek.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/src -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/readdcd.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile_trr.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/trr_seek.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xdrfile_xtc.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/xtc_seek.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/endianswap.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/include/fastio.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/cython_util.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libmdaxdr.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/formats/libdcd.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/formats -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/correlations.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/include/calc_distances.h -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/include -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/picklable_file_io.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/pkdtree.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -creating build/bdist.linux-x86_64/wheel/MDAnalysis/lib/libmdanalysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/libmdanalysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/libmdanalysis/__init__.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib/libmdanalysis -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/NeighborSearch.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/mdamath.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_distopia.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/transformations.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.c -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/distances.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/nsgrid.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_transformations.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/util.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/c_distances_openmp.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/qcprot.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_cutil.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/log.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/lib/_augment.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/lib +creating build/bdist.linux-x86_64/wheel/MDAnalysis/analysis/legacy +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/legacy +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/legacy/x3dna.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis/legacy +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/analysis/dielectric.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/analysis +creating build/bdist.linux-x86_64/wheel/MDAnalysis/visualization +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/streamlines_3D.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/visualization/streamlines.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/visualization creating build/bdist.linux-x86_64/wheel/MDAnalysis/converters -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters -copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/RDKit.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/ParmEd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/OpenMM.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/ParmEdParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/OpenMMParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters copying build/lib.linux-x86_64-cpython-313/MDAnalysis/converters/RDKitParser.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/converters +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/units.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis +creating build/bdist.linux-x86_64/wheel/MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRJ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/__init__.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/MMTF.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/null.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/NAMDBIN.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GRO.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/GSD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TNG.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/chemfiles.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XYZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DLPoly.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/FHIAIMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/chain.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/ParmEd.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.pyx -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TXYZ.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XTC.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/INPCRD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/base.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/MOL2.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DMS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/CRD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.cpp -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/timestep.pxd -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/core.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/TRC.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/H5MD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/DCD.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/LAMMPS.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PDBQT.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/XDR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/memory.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PDB.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/coordinates/PQR.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis/coordinates +copying build/lib.linux-x86_64-cpython-313/MDAnalysis/exceptions.py -> build/bdist.linux-x86_64/wheel/./MDAnalysis running install_egg_info Copying MDAnalysis.egg-info to build/bdist.linux-x86_64/wheel/./MDAnalysis-2.9.0.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/mdanalysis-2.9.0.dist-info/WHEEL -creating '/build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/.tmp-k8vqgd15/mdanalysis-2.9.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/mdanalysis-2.9.0/.pybuild/cpython3_3.13_mdanalysis/.tmp-91ar3754/mdanalysis-2.9.0-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'MDAnalysis/__init__.py' adding 'MDAnalysis/authors.py' adding 'MDAnalysis/due.py' @@ -3414,48 +3450,48 @@ loading intersphinx inventory 'h5py' from https://docs.h5py.org/en/stable/objects.inv ... loading intersphinx inventory 'python' from https://docs.python.org/3/objects.inv ... loading intersphinx inventory 'scipy' from https://docs.scipy.org/doc/scipy/objects.inv ... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'gsd' from https://gsd.readthedocs.io/en/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -loading intersphinx inventory 'griddataformats' from https://mdanalysis.org/GridDataFormats/objects.inv ... -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.h5py.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.h5py.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'maplotlib' from https://matplotlib.org/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -loading intersphinx inventory 'networkx' from https://networkx.org/documentation/stable/objects.inv ... +intersphinx inventory 'https://gsd.readthedocs.io/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='gsd.readthedocs.io', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +loading intersphinx inventory 'griddataformats' from https://mdanalysis.org/GridDataFormats/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.python.org/3/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.python.org', port=443): Max retries exceeded with url: /3/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'pmda' from https://mdanalysis.org/pmda/objects.inv ... +loading intersphinx inventory 'networkx' from https://networkx.org/documentation/stable/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) -loading intersphinx inventory 'parmed' from https://parmed.github.io/ParmEd/html/objects.inv ... -loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... -loading intersphinx inventory 'waterdynamics' from https://www.mdanalysis.org/waterdynamics/objects.inv ... +intersphinx inventory 'https://matplotlib.org/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='matplotlib.org', port=443): Max retries exceeded with url: /stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.scipy.org/doc/scipy/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.scipy.org', port=443): Max retries exceeded with url: /doc/scipy/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +loading intersphinx inventory 'numpy' from https://numpy.org/doc/stable/objects.inv ... loading intersphinx inventory 'rdkit' from https://rdkit.org/docs/objects.inv ... -loading intersphinx inventory 'mdahole2' from https://www.mdanalysis.org/mdahole2/objects.inv ... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://mdanalysis.org/GridDataFormats/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /GridDataFormats/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +loading intersphinx inventory 'parmed' from https://parmed.github.io/ParmEd/html/objects.inv ... loading intersphinx inventory 'pathsimanalysis' from https://www.mdanalysis.org/PathSimAnalysis/objects.inv ... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://networkx.org/documentation/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='networkx.org', port=443): Max retries exceeded with url: /documentation/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +loading intersphinx inventory 'waterdynamics' from https://www.mdanalysis.org/waterdynamics/objects.inv ... +WARNING: failed to reach any of the inventories with the following issues: +intersphinx inventory 'https://mdanalysis.org/pmda/objects.inv' not fetchable due to : HTTPSConnectionPool(host='mdanalysis.org', port=443): Max retries exceeded with url: /pmda/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) loading intersphinx inventory 'dask' from https://docs.dask.org/en/stable/objects.inv ... +loading intersphinx inventory 'mdahole2' from https://www.mdanalysis.org/mdahole2/objects.inv ... WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://numpy.org/doc/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='numpy.org', port=443): Max retries exceeded with url: /doc/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://www.mdanalysis.org/PathSimAnalysis/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /PathSimAnalysis/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://www.mdanalysis.org/waterdynamics/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /waterdynamics/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://rdkit.org/docs/objects.inv' not fetchable due to : HTTPSConnectionPool(host='rdkit.org', port=443): Max retries exceeded with url: /docs/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://parmed.github.io/ParmEd/html/objects.inv' not fetchable due to : HTTPSConnectionPool(host='parmed.github.io', port=443): Max retries exceeded with url: /ParmEd/html/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://www.mdanalysis.org/mdahole2/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /mdahole2/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://docs.dask.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.dask.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://www.mdanalysis.org/PathSimAnalysis/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /PathSimAnalysis/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://www.mdanalysis.org/waterdynamics/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /waterdynamics/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) WARNING: failed to reach any of the inventories with the following issues: -intersphinx inventory 'https://docs.dask.org/en/stable/objects.inv' not fetchable due to : HTTPSConnectionPool(host='docs.dask.org', port=443): Max retries exceeded with url: /en/stable/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) +intersphinx inventory 'https://www.mdanalysis.org/mdahole2/objects.inv' not fetchable due to : HTTPSConnectionPool(host='www.mdanalysis.org', port=443): Max retries exceeded with url: /mdahole2/objects.inv (Caused by ProxyError('Unable to connect to proxy', NewConnectionError(': Failed to establish a new connection: [Errno 111] Connection refused'))) locale_dir /build/reproducible-path/mdanalysis-2.9.0/package/doc/sphinx/source/locales/en/LC_MESSAGES does not exist building [mo]: targets for 0 po files that are out of date writing output... @@ -3522,8 +3558,8 @@ Didn't find DistanceMatrix.atoms in MDAnalysis.analysis.diffusionmap Didn't find DistanceMatrix.results.dist_matrix in MDAnalysis.analysis.diffusionmap reading sources... [ 6%] documentation_pages/analysis/dihedrals -mkdir -p failed for path /nonexistent/first-build/.config/matplotlib: [Errno 13] Permission denied: '/nonexistent' -Matplotlib created a temporary cache directory at /tmp/matplotlib-m9iuumnl because there was an issue with the default path (/nonexistent/first-build/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. +mkdir -p failed for path /nonexistent/second-build/.config/matplotlib: [Errno 13] Permission denied: '/nonexistent' +Matplotlib created a temporary cache directory at /tmp/matplotlib-rsvzukp5 because there was an issue with the default path (/nonexistent/second-build/.config/matplotlib); it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. Didn't find Dihedral.results.angles in MDAnalysis.analysis.dihedrals Didn't find Ramachandran.results.angles in MDAnalysis.analysis.dihedrals Didn't find Janin.results.angles in MDAnalysis.analysis.dihedrals @@ -3846,9 +3882,9 @@ done copying assets... copying static files... -Writing evaluated template result to /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html/_static/language_data.js Writing evaluated template result to /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html/_static/basic.css +Writing evaluated template result to /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html/_static/documentation_options.js Writing evaluated template result to /build/reproducible-path/mdanalysis-2.9.0/.pybuild/html/_static/alabaster.css copying static files: done copying extra files... @@ -4261,12 +4297,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3315163/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3622005 and its subdirectories -I: Current time: Fri Sep 4 23:14:17 -12 2026 -I: pbuilder-time-stamp: 1788606857 +I: removing directory /srv/workspace/pbuilder/3315163 and its subdirectories +I: Current time: Sun Aug 3 19:03:39 +14 2025 +I: pbuilder-time-stamp: 1754197419