Diff of the two buildlogs: -- --- b1/build.log 2025-03-10 03:01:13.745562573 +0000 +++ b2/build.log 2025-03-10 03:37:58.422517203 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Mar 9 14:13:47 -12 2025 -I: pbuilder-time-stamp: 1741572827 +I: Current time: Sun Apr 12 23:24:16 +14 2026 +I: pbuilder-time-stamp: 1775985856 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying i386-fix.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3254769/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 12 09:24 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='b7d10ef7c1404db1b3d4bb666e337766' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3254769' - PS1='# ' - PS2='> ' + INVOCATION_ID=1dbfa0984dc142f99f8cf45e8cd77491 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1561773 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vBh2HybF/pbuilderrc_LPT9 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vBh2HybF/b1 --logfile b1/build.log meep-mpi-default_1.29.0-1.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vBh2HybF/pbuilderrc_sCki --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vBh2HybF/b2 --logfile b2/build.log meep-mpi-default_1.29.0-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3254769/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -382,7 +414,7 @@ Get: 232 http://deb.debian.org/debian trixie/main amd64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 233 http://deb.debian.org/debian trixie/main amd64 quilt all 0.68-1 [437 kB] Get: 234 http://deb.debian.org/debian trixie/main amd64 swig amd64 4.3.0-1 [1503 kB] -Fetched 177 MB in 10s (18.0 MB/s) +Fetched 177 MB in 4s (39.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -1134,8 +1166,8 @@ Setting up tzdata (2025a-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Mar 10 02:16:57 UTC 2025. -Universal Time is now: Mon Mar 10 02:16:57 UTC 2025. +Local time is now: Sun Apr 12 09:26:18 UTC 2026. +Universal Time is now: Sun Apr 12 09:26:18 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -1363,7 +1395,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/meep-mpi-default-1.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../meep-mpi-default_1.29.0-1_source.changes +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/meep-mpi-default-1.29.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../meep-mpi-default_1.29.0-1_source.changes dpkg-buildpackage: info: source package meep-mpi-default dpkg-buildpackage: info: source version 1.29.0-1 dpkg-buildpackage: info: source distribution unstable @@ -1637,7 +1673,7 @@ config.status: executing libtool commands make[1]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0' dh_auto_build - make -j20 + make -j42 make[1]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0' make all-recursive make[2]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0' @@ -1647,7 +1683,7 @@ (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; sed 's/LOOP_OVER/S1LOOP_OVER/g' ../src/step_generic.cpp | sed 's/step_curl/step_curl_stride1/' | sed 's/step_update_EDHB/step_update_EDHB_stride1/' | sed 's/step_beta/step_beta_stride1/'| sed 's/step_bfast/step_bfast_stride1/') > step_generic_stride1.cpp make[4]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/src' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o sphere-quad.o sphere-quad.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o sphere_quad sphere-quad.o -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0/src' (echo "/* This file was automatically generated --- DO NOT EDIT */"; echo; ../src/sphere_quad) > sphere-quad.h @@ -1655,419 +1691,103 @@ make[4]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/src' Making all in support make[5]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/src/support' -/bin/bash ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o mt19937ar.lo mt19937ar.c +/bin/sh ../../libtool --tag=CC --mode=compile x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c -o mt19937ar.lo mt19937ar.c libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c mt19937ar.c -fPIC -DPIC -o .libs/mt19937ar.o libtool: compile: x86_64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -c mt19937ar.c -fPIC -DPIC -o mt19937ar.o >/dev/null 2>&1 -/bin/bash ../../libtool --tag=CC --mode=link x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../../libtool --tag=CC --mode=link x86_64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libsupport.la mt19937ar.lo -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: x86_64-linux-gnu-ar cr .libs/libsupport.a .libs/mt19937ar.o libtool: link: x86_64-linux-gnu-ranlib .libs/libsupport.a libtool: link: ( cd ".libs" && rm -f "libsupport.la" && ln -s "../libsupport.la" "libsupport.la" ) make[5]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0/src/support' make[5]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/src' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o array_slice.lo array_slice.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o anisotropic_averaging.lo anisotropic_averaging.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o bands.lo bands.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o boundaries.lo boundaries.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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case D3: - | ^~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c material_data.cpp -fPIC -DPIC -o material_data.o >/dev/null 2>&1 -In file included from fields.cpp:25: -meep.hpp: In constructor 'meep::fields::fields(meep::structure*, double, double, bool, int, int, std::vector)': -meep.hpp:2255:16: warning: 'meep::fields::working_on' will be initialized after [-Wreorder] - 2255 | timing_scope working_on; - | ^~~~~~~~~~ -meep.hpp:1744:23: warning: 'std::vector meep::fields::bfast_scaled_k' [-Wreorder] - 1744 | std::vector bfast_scaled_k; - | ^~~~~~~~~~~~~~ -fields.cpp:32:1: warning: when initialized here [-Wreorder] - 32 | fields::fields(structure *s, double m, double beta, bool zero_fields_near_cylorigin, - | ^~~~~~ -meep.hpp: In constructor 'meep::fields_chunk::fields_chunk(meep::structure_chunk*, const char*, double, double, bool, int, int, std::vector)': -meep.hpp:1506:10: warning: 'meep::fields_chunk::beta' will be initialized after [-Wreorder] - 1506 | double beta; - | ^~~~ -meep.hpp:1505:23: warning: 'std::vector meep::fields_chunk::bfast_scaled_k' [-Wreorder] - 1505 | std::vector bfast_scaled_k; - | ^~~~~~~~~~~~~~ -fields.cpp:242:1: warning: when initialized here [-Wreorder] - 242 | fields_chunk::fields_chunk(structure_chunk *the_s, const char *od, double m, double beta, - | 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mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o step.lo step.cpp -monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': -monitor.cpp:327:19: warning: 'comp_list' may be used uninitialized [-Wmaybe-uninitialized] - 327 | component cc = comp_list[com_it]; - | ^~ -monitor.cpp:274:15: note: 'comp_list' declared here - 274 | component comp_list[3]; - | ^~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat 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-D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o structure_dump.lo structure_dump.cpp -output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': -output_directory.cpp:115:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] - 115 | snprintf(outdirname, buflen, "%s-out", basename); - | ^~~~ -In file included from /usr/include/stdio.h:970, - from output_directory.cpp:18: -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'const char* meep::make_output_directory(const char*, const char*)' at output_directory.cpp:115:11: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 - 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 69 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 70 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': -output_directory.cpp:124:36: warning: '%s' directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] - 124 | snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); - | ^~ ~~~~~~~~~~ -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'const char* meep::make_output_directory(const char*, const char*)' at output_directory.cpp:124:11: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 600 bytes into a destination of size 300 - 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 69 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 70 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': -output_directory.cpp:120:39: warning: '-out-' directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] - 120 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); - | ^~~~~ -output_directory.cpp:120:36: note: directive argument in the range [0, 2147483647] - 120 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); - | ^~~~~~~~~~~ -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'const char* meep::make_output_directory(const char*, const char*)' at output_directory.cpp:120:15: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 7 and 315 bytes into a destination of size 300 - 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 69 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 70 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c random.cpp -fPIC -DPIC -o .libs/random.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c initialize.cpp -fPIC -DPIC -o .libs/initialize.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c integrate2.cpp -fPIC -DPIC -o .libs/integrate2.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c structure.cpp -fPIC -DPIC -o .libs/structure.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o susceptibility.lo susceptibility.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o -mympi.cpp: In function 'void meep::abort(const char*, ...)': -mympi.cpp:248:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 248 | vasprintf(&s, fmt, ap); - | ~~~~~~~~~^~~~~~~~~~~~~ -mympi.cpp: In function 'void meep::_do_master_printf(FILE*, meep_printf_callback_func, const char*, __va_list_tag*)': -mympi.cpp:692:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] - 692 | vasprintf(&s, fmt, ap); - | ~~~~~~~~~^~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c material_data.cpp -fPIC -DPIC -o .libs/material_data.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_db.cpp -fPIC -DPIC -o .libs/step_db.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c cw_fields.cpp -fPIC -DPIC -o .libs/cw_fields.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c susceptibility.cpp -fPIC -DPIC -o .libs/susceptibility.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 -susceptibility.cpp:228: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 228 | PLOOP_OVER_VOL_OWNED(gv, c, i) { -susceptibility.cpp:242: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 242 | PLOOP_OVER_VOL_OWNED(gv, c, i) { -susceptibility.cpp:252: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 252 | PLOOP_OVER_VOL_OWNED(gv, c, i) { -step_db.cpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': -step_db.cpp:189:19: warning: unused variable 'dk' [-Wunused-variable] - 189 | const int dk = gv.iyee_shift(cc).in_direction(dsig); - | ^~ -step_db.cpp:192:19: warning: unused variable 'dku' [-Wunused-variable] - 192 | const int dku = gv.iyee_shift(cc).in_direction(dsigu); - | ^~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 -In file included from sources.cpp:27: -meep_internals.hpp: In constructor 'meep::src_vol::src_vol(meep::component, meep::src_time*, std::vector&&, std::vector >&&, bool)': -meep_internals.hpp:81:38: warning: 'meep::src_vol::amp' will be initialized after [-Wreorder] - 81 | std::vector > amp; // amplitudes - | ^~~ -meep_internals.hpp:77:8: warning: 'bool meep::src_vol::needs_boundary_fix' [-Wreorder] - 77 | bool needs_boundary_fix; // whether fix_boundary_sources needs calling - | ^~~~~~~~~~~~~~~~~~ -sources.cpp:168:1: warning: when initialized here [-Wreorder] - 168 | src_vol::src_vol(component cc, src_time *st, std::vector &&ind, - | ^~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o time.lo time.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c near2far.cpp -fPIC -DPIC -o .libs/near2far.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c time.cpp -fPIC -DPIC -o .libs/time.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o update_eh.lo update_eh.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o mpb.lo mpb.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o update_pols.lo update_pols.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o vec.lo vec.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c vec.cpp -fPIC -DPIC -o .libs/vec.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o step_generic.lo step_generic.cpp -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o meepgeom.lo meepgeom.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_generic.cpp -fPIC -DPIC -o .libs/step_generic.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c meepgeom.cpp -fPIC -DPIC -o .libs/meepgeom.o -step_generic.cpp:90: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 90 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:96: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 96 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:103: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 103 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:108: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 108 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] -= dtdx * (g1[i + s1] - g1[i]); } -step_generic.cpp:117: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 117 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:127: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 127 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:137: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 137 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:145: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 145 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:161: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 161 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:171: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 171 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:181: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 181 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:188: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 188 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:201: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 201 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:215: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 215 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:228: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 228 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:238: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 238 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:266: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 266 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:278: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 278 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:289: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 289 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:297: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 297 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:308: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 308 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:316: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 316 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 326 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] += betadt * g[i] * cndinv[i]; } -step_generic.cpp:329: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 329 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] += betadt * g[i]; } -step_generic.cpp:351: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 351 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:358: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 358 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:367: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 367 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:374: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 374 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:386: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 386 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:396: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 396 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:408: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 408 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:418: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 418 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:436: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 436 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:446: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 446 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:458: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 458 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:466: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 466 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:480: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 480 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:494: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 494 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:509: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 509 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:520: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 520 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:591: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 591 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:606: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 606 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:618: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 618 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:630: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 630 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:646: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 646 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:659: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 659 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:672: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 672 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:683: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 683 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:693: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 693 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:705: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 705 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:716: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 716 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:725: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 725 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:734: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 734 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:747: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 747 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:757: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 757 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:767: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 767 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:775: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 775 | PLOOP_OVER_IVECS(gv, is, ie, i) { -step_generic.cpp:782: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] - 782 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] = g[i]; } -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 -meepgeom.cpp:2959: warning: ignoring '#pragma unroll ' [-Wunknown-pragmas] - 2959 | #pragma unroll -structure_dump.cpp: In member function 'void meep::structure::dump(const char*, bool)': -structure_dump.cpp:296:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] - 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^ -structure_dump.cpp:296:31: note: using the range [-2147483648, 2147483647] for directive argument - 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^~~~~~~~~~~~~~~~~~~ -In file included from /usr/include/stdio.h:970, - from structure_dump.cpp:22: -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'void meep::structure::dump(const char*, bool)' at structure_dump.cpp:296:19: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 - 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 69 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 70 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o GDSIIgeom.lo GDSIIgeom.cpp -structure_dump.cpp: In member function 'void meep::structure::load(const char*, bool)': -structure_dump.cpp:748:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] - 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^~ -structure_dump.cpp:748:31: note: directive argument in the range [0, 19] - 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); - | ^~~~~~~~~~~~~~~~~~~ -structure_dump.cpp:748:31: note: directive argument in the range [0, 4] -In function 'int snprintf(char*, size_t, const char*, ...)', - inlined from 'void meep::structure::load(const char*, bool)' at structure_dump.cpp:748:19: -/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 - 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, - | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 69 | __glibc_objsize (__s), __fmt, - | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ - 70 | __va_arg_pack ()); - | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c output_directory.cpp -fPIC -DPIC -o .libs/output_directory.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_pols.cpp -fPIC -DPIC -o .libs/update_pols.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c structure_dump.cpp -fPIC -DPIC -o .libs/structure_dump.o libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o .libs/GDSIIgeom.o -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o step_generic_stride1.lo step_generic_stride1.cpp -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 -step_generic.cpp: In function 'void meep::step_bfast(realnum*, component, const realnum*, const realnum*, ptrdiff_t, ptrdiff_t, const grid_volume&, ivec, ivec, realnum, direction, const realnum*, const realnum*, const realnum*, realnum*, direction, const realnum*, const realnum*, const realnum*, realnum, const realnum*, const realnum*, realnum*, realnum*, realnum, realnum)': -step_generic.cpp:434:17: warning: unused variable 'dt2' [-Wunused-variable] - 434 | realnum dt2 = dt * 0.5; - | ^~~ -step_generic.cpp:337:78: warning: unused parameter 'dtdx' [-Wunused-parameter] - 337 | const grid_volume &gv, const ivec is, const ivec ie, realnum dtdx, direction dsig, - | ~~~~~~~~^~~~ -step_generic.cpp:338:27: warning: unused parameter 'sig' [-Wunused-parameter] - 338 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, - | ~~~~~~~~~~^~~ -step_generic.cpp:338:42: warning: unused parameter 'kap' [-Wunused-parameter] - 338 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, - | ~~~~~~~~~~^~~ -step_generic.cpp:339:27: warning: unused parameter 'sigu' [-Wunused-parameter] - 339 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, - | ~~~~~~~~~~^~~~ -step_generic.cpp:339:43: warning: unused parameter 'kapu' [-Wunused-parameter] - 339 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, - | ~~~~~~~~~~^~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o .libs/step_generic_stride1.o -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_eh.cpp -fPIC -DPIC -o .libs/update_eh.o +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c mpb.cpp -fPIC -DPIC -o .libs/mpb.o +step.cpp:144: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 144 | CHUNK_OPENMP +dft.cpp:274: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 274 | PLOOP_OVER_IVECS(fc->gv, is, ie, idx) { step_generic_stride1.cpp:92: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 92 | PS1LOOP_OVER_IVECS(gv, is, ie, i) { step_generic_stride1.cpp:92: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] @@ -2242,13 +1962,240 @@ step_generic_stride1.cpp:784: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 784 | PS1LOOP_OVER_IVECS(gv, is, ie, i) { f[i] = g[i]; } step_generic_stride1.cpp:784: warning: ignoring '#pragma omp simd' [-Wunknown-pragmas] -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 +step_generic.cpp:90: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 90 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:96: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 96 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:103: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 103 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:108: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 108 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] -= dtdx * (g1[i + s1] - g1[i]); } +step_generic.cpp:117: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 117 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:127: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 127 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:137: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 137 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:145: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 145 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:161: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 161 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:171: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 171 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:181: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 181 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:188: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 188 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:201: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 201 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:215: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 215 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:228: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 228 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:238: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 238 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:266: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 266 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:278: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 278 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:289: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 289 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:297: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 297 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:308: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 308 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:316: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 316 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:326: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 326 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] += betadt * g[i] * cndinv[i]; } +step_generic.cpp:329: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 329 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] += betadt * g[i]; } +step_generic.cpp:351: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 351 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:358: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 358 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:367: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 367 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:374: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 374 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:386: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 386 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:396: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 396 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:408: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 408 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:418: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 418 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:436: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 436 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:446: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 446 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:458: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 458 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:466: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 466 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:480: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 480 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:494: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 494 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:509: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 509 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:520: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 520 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:591: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 591 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:606: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 606 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:618: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 618 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:630: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 630 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:646: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 646 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:659: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 659 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:672: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 672 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:683: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 683 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:693: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 693 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:705: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 705 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:716: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 716 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:725: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 725 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:734: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 734 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:747: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 747 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:757: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 757 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:767: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 767 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:775: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 775 | PLOOP_OVER_IVECS(gv, is, ie, i) { +step_generic.cpp:782: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 782 | PLOOP_OVER_IVECS(gv, is, ie, i) { f[i] = g[i]; } +susceptibility.cpp:228: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 228 | PLOOP_OVER_VOL_OWNED(gv, c, i) { +susceptibility.cpp:242: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 242 | PLOOP_OVER_VOL_OWNED(gv, c, i) { +susceptibility.cpp:252: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] + 252 | PLOOP_OVER_VOL_OWNED(gv, c, i) { +meepgeom.cpp:2959: warning: ignoring '#pragma unroll ' [-Wunknown-pragmas] + 2959 | #pragma unroll +In file included from sources.cpp:27: +meep_internals.hpp: In constructor 'meep::src_vol::src_vol(meep::component, meep::src_time*, std::vector&&, std::vector >&&, bool)': +meep_internals.hpp:81:38: warning: 'meep::src_vol::amp' will be initialized after [-Wreorder] + 81 | std::vector > amp; // amplitudes + | ^~~ +meep_internals.hpp:77:8: warning: 'bool meep::src_vol::needs_boundary_fix' [-Wreorder] + 77 | bool needs_boundary_fix; // whether fix_boundary_sources needs calling + | ^~~~~~~~~~~~~~~~~~ +sources.cpp:168:1: warning: when initialized here [-Wreorder] + 168 | src_vol::src_vol(component cc, src_time *st, std::vector &&ind, + | ^~~~~~~ +step_db.cpp: In member function 'bool meep::fields_chunk::step_db(meep::field_type)': +step_db.cpp:189:19: warning: unused variable 'dk' [-Wunused-variable] + 189 | const int dk = gv.iyee_shift(cc).in_direction(dsig); + | ^~ +step_db.cpp:192:19: warning: unused variable 'dku' [-Wunused-variable] + 192 | const int dku = gv.iyee_shift(cc).in_direction(dsigu); + | ^~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c bands.cpp -fPIC -DPIC -o bands.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c random.cpp -fPIC -DPIC -o random.o >/dev/null 2>&1 +step_generic_stride1.cpp: In function 'void meep::step_bfast_stride1(realnum*, component, const realnum*, const realnum*, ptrdiff_t, ptrdiff_t, const grid_volume&, ivec, ivec, realnum, direction, const realnum*, const realnum*, const realnum*, realnum*, direction, const realnum*, const realnum*, const realnum*, realnum, const realnum*, const realnum*, realnum*, realnum*, realnum, realnum)': +step_generic_stride1.cpp:436:17: warning: unused variable 'dt2' [-Wunused-variable] + 436 | realnum dt2 = dt * 0.5; + | ^~~ +step_generic_stride1.cpp:339:78: warning: unused parameter 'dtdx' [-Wunused-parameter] + 339 | const grid_volume &gv, const ivec is, const ivec ie, realnum dtdx, direction dsig, + | ~~~~~~~~^~~~ +step_generic_stride1.cpp:340:27: warning: unused parameter 'sig' [-Wunused-parameter] + 340 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, + | ~~~~~~~~~~^~~ +step_generic_stride1.cpp:340:42: warning: unused parameter 'kap' [-Wunused-parameter] + 340 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, + | ~~~~~~~~~~^~~ +step_generic_stride1.cpp:341:27: warning: unused parameter 'sigu' [-Wunused-parameter] + 341 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, + | ~~~~~~~~~~^~~~ +step_generic_stride1.cpp:341:43: warning: unused parameter 'kapu' [-Wunused-parameter] + 341 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, + | ~~~~~~~~~~^~~~ +output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': +output_directory.cpp:115:35: warning: '-out' directive output may be truncated writing 4 bytes into a region of size between 1 and 300 [-Wformat-truncation=] + 115 | snprintf(outdirname, buflen, "%s-out", basename); + | ^~~~ +In file included from /usr/include/stdio.h:970, + from output_directory.cpp:18: +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'const char* meep::make_output_directory(const char*, const char*)' at output_directory.cpp:115:11: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 5 and 304 bytes into a destination of size 300 + 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 69 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 70 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': +output_directory.cpp:124:36: warning: '%s' directive output may be truncated writing up to 299 bytes into a region of size between 0 and 299 [-Wformat-truncation=] + 124 | snprintf(outsrcname, buflen, "%s/%s", outdirname, sourcename); + | ^~ ~~~~~~~~~~ +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'const char* meep::make_output_directory(const char*, const char*)' at output_directory.cpp:124:11: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 2 and 600 bytes into a destination of size 300 + 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 69 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 70 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +output_directory.cpp: In function 'const char* meep::make_output_directory(const char*, const char*)': +output_directory.cpp:120:39: warning: '-out-' directive output may be truncated writing 5 bytes into a region of size between 1 and 300 [-Wformat-truncation=] + 120 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); + | ^~~~~ +output_directory.cpp:120:36: note: directive argument in the range [0, 2147483647] + 120 | snprintf(outdirname, buflen, "%s-out-%d", basename, i++); + | ^~~~~~~~~~~ +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'const char* meep::make_output_directory(const char*, const char*)' at output_directory.cpp:120:15: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 7 and 315 bytes into a destination of size 300 + 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 69 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 70 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c bicgstab.cpp -fPIC -DPIC -o bicgstab.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c output_directory.cpp -fPIC -DPIC -o output_directory.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 +step_generic.cpp: In function 'void meep::step_bfast(realnum*, component, const realnum*, const realnum*, ptrdiff_t, ptrdiff_t, const grid_volume&, ivec, ivec, realnum, direction, const realnum*, const realnum*, const realnum*, realnum*, direction, const realnum*, const realnum*, const realnum*, realnum, const realnum*, const realnum*, realnum*, realnum*, realnum, realnum)': +step_generic.cpp:434:17: warning: unused variable 'dt2' [-Wunused-variable] + 434 | realnum dt2 = dt * 0.5; + | ^~~ meepgeom.cpp: In copy constructor 'meep_geom::geom_epsilon::geom_epsilon(const meep_geom::geom_epsilon&)': meepgeom.cpp:711:1: warning: base class 'class meep::material_function' should be explicitly initialized in the copy constructor [-Wextra] 711 | geom_epsilon::geom_epsilon(const geom_epsilon &geps1) { | ^~~~~~~~~~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 +step_generic.cpp:337:78: warning: unused parameter 'dtdx' [-Wunused-parameter] + 337 | const grid_volume &gv, const ivec is, const ivec ie, realnum dtdx, direction dsig, + | ~~~~~~~~^~~~ +step_generic.cpp:338:27: warning: unused parameter 'sig' [-Wunused-parameter] + 338 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, + | ~~~~~~~~~~^~~ +step_generic.cpp:338:42: warning: unused parameter 'kap' [-Wunused-parameter] + 338 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, + | ~~~~~~~~~~^~~ +step_generic.cpp:339:27: warning: unused parameter 'sigu' [-Wunused-parameter] + 339 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, + | ~~~~~~~~~~^~~~ +step_generic.cpp:339:43: warning: unused parameter 'kapu' [-Wunused-parameter] + 339 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, + | ~~~~~~~~~~^~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c stress.cpp -fPIC -DPIC -o stress.o >/dev/null 2>&1 meepgeom.cpp: In function 'std::complex meep_geom::get_material_gradient(const meep::vec&, meep::component, meep::component, std::complex, double, geom_epsilon*, meep::grid_volume&, double, double*, int)': meepgeom.cpp:2685:46: warning: unused variable 'dA_du' [-Wunused-variable] 2685 | std::complex row_1[3], row_2[3], dA_du[3]; @@ -2292,6 +2239,7 @@ meepgeom.cpp:2895:49: warning: comparison of integer expressions of different signedness: 'int' and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2895 | if ((num_f_chunks == 0) || (cur_chunk >= num_f_chunks)) continue; | ~~~~~~~~~~^~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c h5file.cpp -fPIC -DPIC -o h5file.o >/dev/null 2>&1 meepgeom.cpp:2962:35: warning: comparison of integer expressions of different signedness: 'ptrdiff_t' {aka 'long int'} and 'size_t' {aka 'long unsigned int'} [-Wsign-compare] 2962 | fwd1 = ((fwd1_idx >= fwd_chunk->N) || (fwd1_idx < 0)) | ~~~~~~~~~^~~~~~~~~~~~~~~ @@ -2301,30 +2249,116 @@ meepgeom.cpp:3000:25: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector::size_type' {aka 'long unsigned int'} [-Wsign-compare] 3000 | for (int ii = 0; ii < adjoint_dft_chunks[i].size(); ii++) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_pols.cpp -fPIC -DPIC -o update_pols.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c fix_boundary_sources.cpp -fPIC -DPIC -o fix_boundary_sources.o >/dev/null 2>&1 +structure_dump.cpp: In member function 'void meep::structure::dump(const char*, bool)': +structure_dump.cpp:296:46: warning: '_' directive output may be truncated writing 1 byte into a region of size between 0 and 9 [-Wformat-truncation=] + 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^ +structure_dump.cpp:296:31: note: using the range [-2147483648, 2147483647] for directive argument + 296 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^~~~~~~~~~~~~~~~~~~ +In file included from /usr/include/stdio.h:970, + from structure_dump.cpp:22: +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'void meep::structure::dump(const char*, bool)' at structure_dump.cpp:296:19: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 43 bytes into a destination of size 20 + 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 69 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 70 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ meepgeom.cpp: In function 'std::complex meep_geom::cond_cmp(meep::component, const meep::vec&, double, geom_epsilon*)': meepgeom.cpp:2617:1: warning: control reaches end of non-void function [-Wreturn-type] 2617 | } | ^ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c GDSIIgeom.cpp -fPIC -DPIC -o GDSIIgeom.o >/dev/null 2>&1 -step_generic_stride1.cpp: In function 'void meep::step_bfast_stride1(realnum*, component, const realnum*, const realnum*, ptrdiff_t, ptrdiff_t, const grid_volume&, ivec, ivec, realnum, direction, const realnum*, const realnum*, const realnum*, realnum*, direction, const realnum*, const realnum*, const realnum*, realnum, const realnum*, const realnum*, realnum*, realnum*, realnum, realnum)': -step_generic_stride1.cpp:436:17: warning: unused variable 'dt2' [-Wunused-variable] - 436 | realnum dt2 = dt * 0.5; - | ^~~ -step_generic_stride1.cpp:339:78: warning: unused parameter 'dtdx' [-Wunused-parameter] - 339 | const grid_volume &gv, const ivec is, const ivec ie, realnum dtdx, direction dsig, - | ~~~~~~~~^~~~ -step_generic_stride1.cpp:340:27: warning: unused parameter 'sig' [-Wunused-parameter] - 340 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, - | ~~~~~~~~~~^~~ -step_generic_stride1.cpp:340:42: warning: unused parameter 'kap' [-Wunused-parameter] - 340 | const RPR sig, const RPR kap, const RPR siginv, RPR fu, direction dsigu, - | ~~~~~~~~~~^~~ -step_generic_stride1.cpp:341:27: warning: unused parameter 'sigu' [-Wunused-parameter] - 341 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, - | ~~~~~~~~~~^~~~ -step_generic_stride1.cpp:341:43: warning: unused parameter 'kapu' [-Wunused-parameter] - 341 | const RPR sigu, const RPR kapu, const RPR siginvu, realnum dt, const RPR cnd, - | ~~~~~~~~~~^~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c update_eh.cpp -fPIC -DPIC -o update_eh.o >/dev/null 2>&1 +In file included from fields.cpp:25: +meep.hpp: In constructor 'meep::fields::fields(meep::structure*, double, double, bool, int, int, std::vector)': +meep.hpp:2255:16: warning: 'meep::fields::working_on' will be initialized after [-Wreorder] + 2255 | timing_scope working_on; + | ^~~~~~~~~~ +meep.hpp:1744:23: warning: 'std::vector meep::fields::bfast_scaled_k' [-Wreorder] + 1744 | std::vector bfast_scaled_k; + | ^~~~~~~~~~~~~~ +fields.cpp:32:1: warning: when initialized here [-Wreorder] + 32 | fields::fields(structure *s, double m, double beta, bool zero_fields_near_cylorigin, + | ^~~~~~ +meep.hpp: In constructor 'meep::fields_chunk::fields_chunk(meep::structure_chunk*, const char*, double, double, bool, int, int, std::vector)': +meep.hpp:1506:10: warning: 'meep::fields_chunk::beta' will be initialized after [-Wreorder] + 1506 | double beta; + | ^~~~ +meep.hpp:1505:23: warning: 'std::vector meep::fields_chunk::bfast_scaled_k' [-Wreorder] + 1505 | std::vector bfast_scaled_k; + | ^~~~~~~~~~~~~~ +fields.cpp:242:1: warning: when initialized here [-Wreorder] + 242 | fields_chunk::fields_chunk(structure_chunk *the_s, const char *od, double m, double beta, + | ^~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c initialize.cpp -fPIC -DPIC -o initialize.o >/dev/null 2>&1 +boundaries.cpp: In member function 'meep::ivec meep::fields::ilattice_vector(meep::direction) const': +boundaries.cpp:120:7: warning: this statement may fall through [-Wimplicit-fallthrough=] + 120 | switch (d) { + | ^~~~~~ +boundaries.cpp:128:5: note: here + 128 | case D3: + | ^~~~ +monitor.cpp: In member function 'std::complex meep::structure_chunk::get_chi1inv_at_pt(meep::component, meep::direction, int, double) const': +monitor.cpp:327:19: warning: 'comp_list' may be used uninitialized [-Wmaybe-uninitialized] + 327 | component cc = comp_list[com_it]; + | ^~ +monitor.cpp:274:15: note: 'comp_list' declared here + 274 | component comp_list[3]; + | ^~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c energy_and_flux.cpp -fPIC -DPIC -o energy_and_flux.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c h5fields.cpp -fPIC -DPIC -o h5fields.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c multilevel-atom.cpp -fPIC -DPIC -o multilevel-atom.o >/dev/null 2>&1 +structure_dump.cpp: In member function 'void meep::structure::load(const char*, bool)': +structure_dump.cpp:748:44: warning: '%d' directive output may be truncated writing between 1 and 2 bytes into a region of size between 1 and 10 [-Wformat-truncation=] + 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^~ +structure_dump.cpp:748:31: note: directive argument in the range [0, 19] + 748 | snprintf(dname, 20, "%c_%d_sigma_%d_%d", ft == 0 ? 'E' : 'H', i, c, d); + | ^~~~~~~~~~~~~~~~~~~ +structure_dump.cpp:748:31: note: directive argument in the range [0, 4] +In function 'int snprintf(char*, size_t, const char*, ...)', + inlined from 'void meep::structure::load(const char*, bool)' at structure_dump.cpp:748:19: +/usr/include/x86_64-linux-gnu/bits/stdio2.h:68:35: note: '__builtin___snprintf_chk' output between 14 and 24 bytes into a destination of size 20 + 68 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, + | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 69 | __glibc_objsize (__s), __fmt, + | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ + 70 | __va_arg_pack ()); + | ~~~~~~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c sources.cpp -fPIC -DPIC -o sources.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c material_data.cpp -fPIC -DPIC -o material_data.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c mpb.cpp -fPIC -DPIC -o mpb.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c dft_ldos.cpp -fPIC -DPIC -o dft_ldos.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c casimir.cpp -fPIC -DPIC -o casimir.o >/dev/null 2>&1 +mympi.cpp: In function 'void meep::abort(const char*, ...)': +mympi.cpp:248:12: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 248 | vasprintf(&s, fmt, ap); + | ~~~~~~~~~^~~~~~~~~~~~~ +mympi.cpp: In function 'void meep::_do_master_printf(FILE*, meep_printf_callback_func, const char*, __va_list_tag*)': +mympi.cpp:692:16: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)' declared with attribute 'warn_unused_result' [-Wunused-result] + 692 | vasprintf(&s, fmt, ap); + | ~~~~~~~~~^~~~~~~~~~~~~ +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c monitor.cpp -fPIC -DPIC -o monitor.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c integrate.cpp -fPIC -DPIC -o integrate.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c loop_in_chunks.cpp -fPIC -DPIC -o loop_in_chunks.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c structure_dump.cpp -fPIC -DPIC -o structure_dump.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c integrate2.cpp -fPIC -DPIC -o integrate2.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c fields_dump.cpp -fPIC -DPIC -o fields_dump.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c cw_fields.cpp -fPIC -DPIC -o cw_fields.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c time.cpp -fPIC -DPIC -o time.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step.cpp -fPIC -DPIC -o step.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c mympi.cpp -fPIC -DPIC -o mympi.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c susceptibility.cpp -fPIC -DPIC -o susceptibility.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c near2far.cpp -fPIC -DPIC -o near2far.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_db.cpp -fPIC -DPIC -o step_db.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c fields.cpp -fPIC -DPIC -o fields.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c array_slice.cpp -fPIC -DPIC -o array_slice.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 meepgeom.cpp: In function 'void meep_geom::material_grids_addgradient_point(double*, vector3, double, geom_epsilon*, meep::component, meep::component, std::complex, std::complex, double, meep::grid_volume&, double)': meepgeom.cpp:2824:28: warning: 'kind' may be used uninitialized [-Wmaybe-uninitialized] 2824 | add_interpolate_weights(p.x, p.y, p.z, vcur, sz.x, sz.y, sz.z, 1, scalegrad, ucur, kind, uval, @@ -2334,12 +2368,14 @@ meepgeom.cpp:2760:7: note: 'kind' was declared here 2760 | int kind; | ^~~~ -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c vec.cpp -fPIC -DPIC -o vec.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c anisotropic_averaging.cpp -fPIC -DPIC -o anisotropic_averaging.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c boundaries.cpp -fPIC -DPIC -o boundaries.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 +libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c dft.cpp -fPIC -DPIC -o dft.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c meepgeom.cpp -fPIC -DPIC -o meepgeom.o >/dev/null 2>&1 libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c structure.cpp -fPIC -DPIC -o structure.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_generic.cpp -fPIC -DPIC -o step_generic.o >/dev/null 2>&1 -libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c step_generic_stride1.cpp -fPIC -DPIC -o step_generic_stride1.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -version-info 33:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/x86_64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -version-info 33:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o libmeep.la -rpath /usr/lib/x86_64-linux-gnu array_slice.lo anisotropic_averaging.lo bands.lo boundaries.lo bicgstab.lo casimir.lo cw_fields.lo dft.lo dft_ldos.lo energy_and_flux.lo fields.lo fields_dump.lo fix_boundary_sources.lo loop_in_chunks.lo h5fields.lo h5file.lo initialize.lo integrate.lo integrate2.lo material_data.lo monitor.lo mympi.lo multilevel-atom.lo near2far.lo output_directory.lo random.lo sources.lo step.lo step_db.lo stress.lo structure.lo structure_dump.lo susceptibility.lo time.lo update_eh.lo mpb.lo update_pols.lo vec.lo step_generic.lo meepgeom.lo GDSIIgeom.lo step_generic_stride1.lo support/libsupport.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/array_slice.o .libs/anisotropic_averaging.o .libs/bands.o .libs/boundaries.o .libs/bicgstab.o .libs/casimir.o .libs/cw_fields.o .libs/dft.o .libs/dft_ldos.o .libs/energy_and_flux.o .libs/fields.o .libs/fields_dump.o .libs/fix_boundary_sources.o .libs/loop_in_chunks.o .libs/h5fields.o .libs/h5file.o .libs/initialize.o .libs/integrate.o .libs/integrate2.o .libs/material_data.o .libs/monitor.o .libs/mympi.o .libs/multilevel-atom.o .libs/near2far.o .libs/output_directory.o .libs/random.o .libs/sources.o .libs/step.o .libs/step_db.o .libs/stress.o .libs/structure.o .libs/structure_dump.o .libs/susceptibility.o .libs/time.o .libs/update_eh.o .libs/mpb.o .libs/update_pols.o .libs/vec.o .libs/step_generic.o .libs/meepgeom.o .libs/GDSIIgeom.o .libs/step_generic_stride1.o -Wl,--whole-archive support/.libs/libsupport.a -Wl,--no-whole-archive -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,libmeep.so.33 -o .libs/libmeep.so.33.0.0 libtool: link: (cd ".libs" && rm -f "libmeep.so.33" && ln -s "libmeep.so.33.0.0" "libmeep.so.33") libtool: link: (cd ".libs" && rm -f "libmeep.so" && ln -s "libmeep.so.33.0.0" "libmeep.so") @@ -2428,15 +2464,6 @@ geom.cpp:2357:11: warning: variable 'axisp' set but not used [-Wunused-but-set-variable] 2357 | vector3 axisp = vector3_scale(height, zhatp); | ^~~~~ -In function 'bool get_front_object(const meep::volume&, geom_box_tree, vector3&, const ctlio::geometric_object**, vector3&, ctlio::material_type&, ctlio::material_type&)', - inlined from 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)' at structure.cpp:618:40: -structure.cpp:581:10: warning: 'mat1' may be used uninitialized [-Wmaybe-uninitialized] - 581 | mat2 = mat1; - | ~~~~~^~~~~~ -structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': -structure.cpp:509:17: note: 'mat1' declared here - 509 | material_type mat1, mat2; - | ^~~~ meep_wrap.cxx: In function 'scm_unused_struct* _wrap_new_meep_dft_flux__SWIG_0(int, scm_unused_struct**)': meep_wrap.cxx:36080:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 36080 | arg1 = (meep::component const) scm_to_int(argv[0]); @@ -2458,7 +2485,16 @@ meep_wrap.cxx:36212:12: warning: type qualifiers ignored on cast result type [-Wignored-qualifiers] 36212 | arg2 = (meep::component const) scm_to_int(argv[1]); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +In function 'bool get_front_object(const meep::volume&, geom_box_tree, vector3&, const ctlio::geometric_object**, vector3&, ctlio::material_type&, ctlio::material_type&)', + inlined from 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)' at structure.cpp:618:40: +structure.cpp:581:10: warning: 'mat1' may be used uninitialized [-Wmaybe-uninitialized] + 581 | mat2 = mat1; + | ~~~~~^~~~~~ +structure.cpp: In member function 'virtual void geom_epsilon::eff_chi1inv_row(meep::component, double*, const meep::volume&, double, int)': +structure.cpp:509:17: note: 'mat1' declared here + 509 | material_type mat1, mat2; + | ^~~~ +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/libmeep.la -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/meep meep-meep.o meep-structure.o meep-meep_wrap.o meep-main.o meep-geom.o meep-ctl-io.o ../src/.libs/libmeep.so -lctl -lguile-3.0 -lgc -lpthread -ldl -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0/scheme' make[3]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0/scheme' @@ -2474,7 +2510,7 @@ fi make all-am make[4]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/python' -/bin/bash ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.13 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx +/bin/sh ../libtool --tag=CXX --mode=compile mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.13 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o _meep_la-meep-python.lo `test -f 'meep-python.cxx' || echo './'`meep-python.cxx libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.13 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c meep-python.cxx -fPIC -DPIC -o .libs/_meep_la-meep-python.o meep-python.cxx: In function 'meep::structure* create_structure(vector3, std::vector, std::vector, std::vector, std::vector, std::vector, meep::grid_volume&, const meep::boundary_region&, const meep::symmetry&, int, double, bool, double, int, geometric_object_list, vector3, bool, meep_geom::material_type, meep_geom::absorber_list, meep_geom::material_type_list, bool, bool, meep::structure*, bool, const meep::binary_partition*)': meep-python.cxx:7524:62: warning: unused parameter 'alist' [-Wunused-parameter] @@ -2545,7 +2581,7 @@ 115 | static PyObject *py_volume_object() { | ^~~~~~~~~~~~~~~~ libtool: compile: mpic++ -DHAVE_CONFIG_H -I. -I.. -I/usr/include/python3.13 -I/usr/lib/x86_64-linux-gnu/python3-numpy/numpy/_core/include -I../src -I../libpympb -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c meep-python.cxx -fPIC -DPIC -o _meep_la-meep-python.o >/dev/null 2>&1 -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -module -version-info 33:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.13/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -module -version-info 33:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.13/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/_meep_la-meep-python.o -Wl,-rpath -Wl,/build/reproducible-path/meep-mpi-default-1.29.0/src/.libs ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.33 -o .libs/_meep.so.33.0.0 libtool: link: (cd ".libs" && rm -f "_meep.so.33" && ln -s "_meep.so.33.0.0" "_meep.so.33") libtool: link: (cd ".libs" && rm -f "_meep.so" && ln -s "_meep.so.33.0.0" "_meep.so") @@ -2595,94 +2631,94 @@ make aniso_disp bench bragg_transmission convergence_cyl_waveguide cylindrical dump_load flux harmonics integrate known_results near2far one_dimensional physical stress_tensor symmetry three_d two_dimensional 2D_convergence h5test pml pw-source-ll ring-ll cyl-ellipsoid-ll absorber-1d-ll array-slice-ll user-defined-material dft-fields gdsII-3d bend-flux-ll array-metadata make[4]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/tests' mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o aniso_disp.o aniso_disp.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o aniso_disp aniso_disp.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/aniso_disp aniso_disp.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o bench.o bench.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bench bench.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bench bench.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/bench bench.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o bragg_transmission.o bragg_transmission.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bragg_transmission bragg_transmission.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 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-L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o user-defined-material.o user-defined-material.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o user-defined-material user-defined-material.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 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-L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/user-defined-material user-defined-material.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time 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-L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o dft-fields dft-fields.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/dft-fields dft-fields.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong 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-ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o gdsII-3d gdsII-3d.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/gdsII-3d gdsII-3d.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o bend-flux-ll.o bend-flux-ll.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o bend-flux-ll bend-flux-ll.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/bend-flux-ll bend-flux-ll.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath mpic++ -DHAVE_CONFIG_H -I. -I.. -I../src -DDATADIR=\"./\" -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/openmpi -I/usr/include/guile/3.0 -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -c -o array-metadata.o array-metadata.cpp -/bin/bash ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath +/bin/sh ../libtool --tag=CXX --mode=link mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o array-metadata array-metadata.o ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath libtool: link: mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o .libs/array-metadata array-metadata.o ../src/.libs/libmeep.so -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath make[4]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0/tests' make check-TESTS @@ -2825,7 +2861,7 @@ # XPASS: 0 # ERROR: 0 -System information (uname -a): Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 +System information (uname -a): Linux 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 Distribution information (/etc/os-release): PRETTY_NAME="Debian GNU/Linux trixie/sid" NAME="Debian GNU/Linux" @@ -2860,7 +2896,7 @@ make[5]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/src' make[6]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/src' /usr/bin/mkdir -p '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu' - /bin/bash ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu' + /bin/sh ../libtool --mode=install /usr/bin/install -c libmeep.la '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libmeep.so.33.0.0 /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.33.0.0 libtool: install: (cd /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.33.0.0 libmeep.so.33 || { rm -f libmeep.so.33 && ln -s libmeep.so.33.0.0 libmeep.so.33; }; }) libtool: install: (cd /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libmeep.so.33.0.0 libmeep.so || { rm -f libmeep.so && ln -s libmeep.so.33.0.0 libmeep.so; }; }) @@ -2890,7 +2926,7 @@ make[4]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/scheme' make[5]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/scheme' /usr/bin/mkdir -p '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/bin' - /bin/bash ../libtool --mode=install /usr/bin/install -c meep '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/bin' + /bin/sh ../libtool --mode=install /usr/bin/install -c meep '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/bin' libtool: warning: '../src/libmeep.la' has not been installed in '/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/meep /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/bin/meep /usr/bin/mkdir -p '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/share/meep' @@ -2904,9 +2940,9 @@ make[4]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/python' make[5]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0/python' /usr/bin/mkdir -p '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/python3.13/site-packages/meep' - /bin/bash ../libtool --mode=install /usr/bin/install -c _meep.la '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/python3.13/site-packages/meep' + /bin/sh ../libtool --mode=install /usr/bin/install -c _meep.la '/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/python3.13/site-packages/meep' libtool: warning: relinking '_meep.la' -libtool: install: (cd /build/reproducible-path/meep-mpi-default-1.29.0/python; /bin/bash "/build/reproducible-path/meep-mpi-default-1.29.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -module -version-info 33:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.13/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp) +libtool: install: (cd /build/reproducible-path/meep-mpi-default-1.29.0/python; /bin/sh "/build/reproducible-path/meep-mpi-default-1.29.0/libtool" --tag CXX --mode=relink mpic++ -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wall -W -module -version-info 33:0:0 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -o _meep.la -rpath /usr/lib/python3.13/site-packages/meep _meep_la-meep-python.lo ../src/libmeep.la -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lm -lharminv -llapack -lblas -lfftw3 -lm -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lm -lquadmath -inst-prefix-dir /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp) libtool: relink: mpic++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/14/crtbeginS.o .libs/_meep_la-meep-python.o -L/build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lmeep -lGDSII -lctlgeom -lhdf5 -lz -lgsl -lgslcblas -lharminv -llapack -lblas -L/usr/lib/gcc/x86_64-linux-gnu/14 -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/14/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/14/../../.. -L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -lfftw3 -lgfortran -lquadmath -L/usr/lib/x86_64-linux-gnu/openmpi/lib -lmpi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/14/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/14/../../../x86_64-linux-gnu/crtn.o -g -O2 -ffile-prefix-map=/build/reproducible-path/meep-mpi-default-1.29.0=. -fstack-protector-strong -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/openmpi -Wl,-soname -Wl,_meep.so.33 -o .libs/_meep.so.33.0.0 libtool: install: /usr/bin/install -c .libs/_meep.so.33.0.0T /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/python3.13/site-packages/meep/_meep.so.33.0.0 libtool: install: (cd /build/reproducible-path/meep-mpi-default-1.29.0/debian/tmp/usr/lib/python3.13/site-packages/meep && { ln -s -f _meep.so.33.0.0 _meep.so.33 || { rm -f _meep.so.33 && ln -s _meep.so.33.0.0 _meep.so.33; }; }) @@ -2949,69 +2985,563 @@ make[2]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0' find . -./.travis.yml -./codecov.yml -./add_type_hints.xonsh -./Makefile.am +./src +./src/meepgeom.cpp +./src/libmeep.la +./src/output_directory.lo +./src/casimir.o +./src/multilevel-atom.cpp +./src/h5fields.o +./src/structure.lo +./src/material_data.hpp +./src/vec.lo +./src/GDSIIgeom.o +./src/random.o +./src/step.o +./src/fields_dump.o +./src/time.o +./src/h5file.o +./src/sphere-quad.cpp +./src/update_pols.lo +./src/initialize.cpp +./src/fix_boundary_sources.o +./src/susceptibility.o +./src/material_data.o +./src/meepgeom.o +./src/stress.o +./src/dft_ldos.cpp +./src/integrate2.lo +./src/fields_dump.cpp +./src/GDSIIgeom.lo +./src/cw_fields.o +./src/bands.cpp +./src/anisotropic_averaging.o +./src/monitor.cpp +./src/step_generic_stride1.cpp +./src/step_db.lo +./src/mympi.o +./src/dft_ldos.lo +./src/sphere_quad +./src/dft_ldos.o +./src/boundaries.lo +./src/GDSIIgeom.cpp +./src/mpb.cpp +./src/fields.cpp +./src/fields.lo +./src/initialize.o +./src/near2far.o +./src/multilevel-atom.lo +./src/mympi.cpp +./src/meep +./src/meep/mympi.hpp +./src/meep/vec.hpp +./src/meep/meep-config.h +./src/meep/meep-config.h.in +./src/monitor.o +./src/.libs +./src/.libs/libmeep.la +./src/.libs/casimir.o +./src/.libs/h5fields.o +./src/.libs/GDSIIgeom.o +./src/.libs/random.o +./src/.libs/step.o +./src/.libs/fields_dump.o +./src/.libs/time.o +./src/.libs/h5file.o +./src/.libs/fix_boundary_sources.o +./src/.libs/susceptibility.o +./src/.libs/material_data.o +./src/.libs/meepgeom.o +./src/.libs/stress.o +./src/.libs/libmeep.a +./src/.libs/cw_fields.o +./src/.libs/anisotropic_averaging.o +./src/.libs/libmeep.so.33 +./src/.libs/mympi.o +./src/.libs/dft_ldos.o +./src/.libs/initialize.o +./src/.libs/near2far.o +./src/.libs/monitor.o +./src/.libs/structure_dump.o +./src/.libs/dft.o +./src/.libs/vec.o +./src/.libs/step_db.o +./src/.libs/update_pols.o +./src/.libs/integrate2.o +./src/.libs/bicgstab.o +./src/.libs/array_slice.o +./src/.libs/energy_and_flux.o +./src/.libs/multilevel-atom.o +./src/.libs/loop_in_chunks.o +./src/.libs/integrate.o +./src/.libs/libmeep.so.33.0.0 +./src/.libs/boundaries.o +./src/.libs/fields.o +./src/.libs/libmeep.so +./src/.libs/libmeep.lai +./src/.libs/step_generic_stride1.o +./src/.libs/update_eh.o +./src/.libs/step_generic.o +./src/.libs/bands.o +./src/.libs/sources.o +./src/.libs/structure.o +./src/.libs/output_directory.o +./src/.libs/mpb.o +./src/array_slice.cpp +./src/update_eh.lo +./src/Makefile.am +./src/anisotropic_averaging.lo +./src/sources.lo +./src/structure.cpp +./src/random.lo +./src/step_generic.cpp +./src/structure_dump.o +./src/h5fields.cpp +./src/stress.cpp +./src/Makefile +./src/dft.o +./src/step_generic_stride1.lo +./src/mpb.lo +./src/stress.lo +./src/step_generic.lo +./src/vec.o +./src/near2far.lo +./src/support +./src/support/mt19937ar.o +./src/support/meep_mt.h +./src/support/.libs +./src/support/.libs/mt19937ar.o +./src/support/.libs/libsupport.la +./src/support/.libs/libsupport.a +./src/support/Makefile.am +./src/support/Makefile +./src/support/mt19937ar.lo +./src/support/mt19937ar.c +./src/support/Makefile.in +./src/support/libsupport.la +./src/cw_fields.cpp +./src/step_db.o +./src/update_pols.o +./src/integrate2.o +./src/bicgstab.o +./src/monitor.lo +./src/update_pols.cpp +./src/array_slice.o +./src/structure_dump.lo +./src/energy_and_flux.o +./src/loop_in_chunks.cpp +./src/multilevel-atom.o +./src/random.cpp +./src/h5file.cpp +./src/susceptibility.cpp +./src/fix_boundary_sources.cpp +./src/meepgeom.lo +./src/loop_in_chunks.o +./src/fields_dump.lo +./src/array_slice.lo +./src/integrate.o +./src/step.cpp +./src/casimir.lo +./src/cw_fields.lo +./src/output_directory.cpp +./src/boundaries.o +./src/dft.cpp +./src/anisotropic_averaging.cpp +./src/h5file.lo +./src/material_data.cpp +./src/loop_in_chunks.lo +./src/sources.cpp +./src/fields.o +./src/boundaries.cpp +./src/near2far.cpp +./src/integrate.cpp +./src/material_data.lo +./src/bicgstab.cpp +./src/bands.lo +./src/update_eh.cpp +./src/dft.lo +./src/step_db.cpp +./src/step_generic_stride1.o +./src/update_eh.o +./src/bicgstab.lo +./src/time.cpp +./src/meep.hpp +./src/structure_dump.cpp +./src/time.lo +./src/step_generic.o +./src/Makefile.in +./src/bands.o +./src/sphere-quad.o +./src/vec.cpp +./src/sources.o +./src/sphere-quad.h +./src/structure.o +./src/casimir.cpp +./src/integrate2.cpp +./src/bicgstab.hpp +./src/adjust_verbosity.hpp +./src/mympi.lo +./src/energy_and_flux.lo +./src/susceptibility.lo +./src/output_directory.o +./src/step.lo +./src/initialize.lo +./src/meepgeom.hpp +./src/mpb.o +./src/integrate.lo +./src/h5fields.lo +./src/meep_internals.hpp +./src/energy_and_flux.cpp +./src/fix_boundary_sources.lo +./LICENSE +./scheme +./scheme/materials.scm +./scheme/meep-ctl-const.hpp +./scheme/meep.i +./scheme/casimir.scm +./scheme/meep-geom.o +./scheme/meep_wrap.cxx.bak +./scheme/meep +./scheme/ctl-io.h +./scheme/geom.cpp +./scheme/.libs +./scheme/.libs/meep +./scheme/meep-main.o +./scheme/Makefile.am +./scheme/structure.cpp +./scheme/meep_enum_renames.i +./scheme/meep_swig_bug_workaround.i +./scheme/ctl-io.i +./scheme/meep_renames.i +./scheme/Makefile +./scheme/meep-ctl-swig.hpp +./scheme/meep.cpp +./scheme/ctl-io.cpp +./scheme/meep_op_renames.i +./scheme/meep-structure.o +./scheme/main.cpp +./scheme/meep_wrap.cxx.orig +./scheme/meep_wrap.cxx +./scheme/meep_wrap.patch +./scheme/meep-enums.scm +./scheme/meep-ctl.hpp +./scheme/meep-meep.o +./scheme/meep.scm +./scheme/Makefile.in +./scheme/meep.scm.in +./scheme/meep-ctl-io.o +./scheme/examples +./scheme/examples/oblique-planewave.ctl +./scheme/examples/bend-flux.ctl +./scheme/examples/bent-waveguide.ctl +./scheme/examples/mie-scattering.ctl +./scheme/examples/stochastic-emitter.ctl +./scheme/examples/refl-angular-kz2d.ctl +./scheme/examples/ring.ctl +./scheme/examples/perturbation-theory.ctl +./scheme/examples/polarization_grating.ctl +./scheme/examples/parallel-wvgs-force.ctl +./scheme/examples/group-velocity.ctl +./scheme/examples/material-dispersion.ctl +./scheme/examples/zone-plate.ctl +./scheme/examples/antenna-radiation.ctl +./scheme/examples/ring-cyl.ctl +./scheme/examples/absorbed-power-density.ctl +./scheme/examples/mode-decomposition.ctl +./scheme/examples/pw-source.ctl +./scheme/examples/cherenkov-radiation.ctl +./scheme/examples/oblique-source.ctl +./scheme/examples/wvg_src.ctl +./scheme/examples/metasurface_lens_phasemap.ctl +./scheme/examples/cylinder-cross-section.ctl +./scheme/examples/holey-wvg-cavity.ctl +./scheme/examples/metal-cavity-ldos.ctl +./scheme/examples/refl-angular.ctl +./scheme/examples/binary_grating_oblique.ctl +./scheme/examples/faraday-rotation.ctl +./scheme/examples/multilevel-atom.ctl +./scheme/examples/chirped-pulse.ctl +./scheme/examples/3rd-harm-1d.ctl +./scheme/examples/gaussian-beam.ctl +./scheme/examples/differential-cross-section.ctl +./scheme/examples/binary_grating_n2f.ctl +./scheme/examples/binary_grating_phasemap.ctl +./scheme/examples/refl-quartz.ctl +./scheme/examples/mode-coeffs.ctl +./scheme/examples/solve-cw.ctl +./scheme/examples/cavity-farfield.ctl +./scheme/examples/holey-wvg-bands.ctl +./scheme/examples/perturbation-theory-2d.ctl +./scheme/examples/straight-waveguide.ctl +./scheme/examples/metasurface_lens_farfield.ctl +./scheme/examples/finite_grating.ctl +./scheme/examples/parallel-wvgs-mpb.ctl +./scheme/examples/binary_grating.ctl +./scheme/meep-meep_wrap.o +./missing +./.readthedocs.yaml +./autogen.sh ./.pre-commit-config.yaml +./meep.pc +./config.status +./depcomp ./m4 -./m4/ltoptions.m4 -./m4/lt~obsolete.m4 -./m4/ax_lapack.m4 +./m4/ltversion.m4 ./m4/ax_blas.m4 -./m4/ax_cxx_compile_stdcxx.m4 +./m4/ax_lapack.m4 ./m4/ax_mpi.m4 -./m4/ltversion.m4 +./m4/ltsugar.m4 ./m4/ax_gcc_archflag.m4 -./m4/ax_cxx_maxopt.m4 -./m4/libtool.m4 -./m4/ax_check_compiler_flags.m4 -./m4/ax_compiler_vendor.m4 -./m4/ax_openmp.m4 +./m4/ax_cxx_compile_stdcxx.m4 ./m4/pkg.m4 +./m4/ax_compiler_vendor.m4 +./m4/ltoptions.m4 ./m4/ax_gcc_x86_cpuid.m4 -./m4/ltsugar.m4 -./depcomp -./.mailmap +./m4/ax_openmp.m4 +./m4/ax_check_compiler_flags.m4 +./m4/lt~obsolete.m4 +./m4/libtool.m4 +./m4/ax_cxx_maxopt.m4 +./config.h.in +./mkdocs.yml +./meep-pkgconfig.in +./tests +./tests/gdsII-3d.o +./tests/bragg_transmission.log +./tests/h5test.trs +./tests/harmonics.o +./tests/dump_load.log +./tests/three_d.trs +./tests/three_d.cpp +./tests/physical.cpp +./tests/integrate +./tests/convergence_cyl_waveguide.cpp +./tests/h5test.o +./tests/2D_convergence.trs +./tests/known_results.o +./tests/flux +./tests/near2far +./tests/harmonics.cpp +./tests/2D_convergence +./tests/aniso_disp.trs +./tests/three_d +./tests/bench.log +./tests/bragg_transmission.trs +./tests/bend-flux-ll.o +./tests/cyl-ellipsoid-eps-ref.h5 +./tests/pw-source-ll.o +./tests/array-metadata.o +./tests/absorber-1d-ll.cpp +./tests/symmetry +./tests/stress_tensor.cpp +./tests/pw-source-ll +./tests/one_dimensional +./tests/array-slice-ll.o +./tests/aniso_disp.cpp +./tests/flux.o +./tests/physical +./tests/stress_tensor.o +./tests/gdsII-3d +./tests/cyl-ellipsoid-ll +./tests/gdsII-3d.cpp +./tests/two_dimensional +./tests/dump_load.trs +./tests/near2far.o +./tests/one_dimensional.log +./tests/bragg_transmission +./tests/pml +./tests/one_dimensional.trs +./tests/array-metadata +./tests/.libs +./tests/.libs/integrate +./tests/.libs/flux +./tests/.libs/near2far +./tests/.libs/2D_convergence +./tests/.libs/three_d +./tests/.libs/symmetry +./tests/.libs/pw-source-ll +./tests/.libs/one_dimensional +./tests/.libs/physical +./tests/.libs/gdsII-3d +./tests/.libs/cyl-ellipsoid-ll +./tests/.libs/two_dimensional +./tests/.libs/bragg_transmission +./tests/.libs/pml +./tests/.libs/array-metadata +./tests/.libs/dft-fields +./tests/.libs/dump_load +./tests/.libs/bench +./tests/.libs/cylindrical +./tests/.libs/convergence_cyl_waveguide +./tests/.libs/h5test +./tests/.libs/stress_tensor +./tests/.libs/bend-flux-ll +./tests/.libs/user-defined-material +./tests/.libs/ring-ll +./tests/.libs/array-slice-ll +./tests/.libs/absorber-1d-ll +./tests/.libs/harmonics +./tests/.libs/known_results +./tests/.libs/aniso_disp +./tests/physical.log +./tests/Makefile.am +./tests/dft-fields +./tests/known_results.cpp +./tests/dump_load +./tests/two_dimensional.log +./tests/three_d.log +./tests/test-suite.log +./tests/two_dimensional.cpp +./tests/gdsII-3d.gds +./tests/2D_convergence.log +./tests/Makefile +./tests/cylindrical.log +./tests/ring-ll.cpp +./tests/symmetry.cpp +./tests/bench +./tests/one_dimensional.o +./tests/convergence_cyl_waveguide.trs +./tests/harmonics.trs +./tests/known_results.log +./tests/three_d.o +./tests/cylindrical.cpp +./tests/stress_tensor.log +./tests/stress_tensor.trs +./tests/ring-ll.o +./tests/dft-fields.cpp +./tests/cylindrical +./tests/2D_convergence.cpp +./tests/pml.cpp +./tests/integrate.o +./tests/array-metadata.cpp +./tests/one_dimensional.cpp +./tests/convergence_cyl_waveguide +./tests/near2far.log +./tests/bragg_transmission.o +./tests/pml.log +./tests/dump_load.cpp +./tests/near2far.cpp +./tests/physical.trs +./tests/bench.trs +./tests/cyl-ellipsoid-ll.cpp +./tests/integrate.cpp +./tests/harmonics.log +./tests/flux.cpp +./tests/bench.o +./tests/h5test +./tests/bragg_transmission.cpp +./tests/stress_tensor +./tests/bend-flux-ll +./tests/known_results.trs +./tests/bend-flux-ll.cpp +./tests/convergence_cyl_waveguide.log +./tests/user-defined-material +./tests/cylindrical.o +./tests/2D_convergence.o +./tests/aniso_disp.o +./tests/absorber-1d-ll.o +./tests/near2far.trs +./tests/ring-ll +./tests/pw-source-ll.cpp +./tests/flux.log +./tests/cylindrical.trs +./tests/aniso_disp.log +./tests/bench.cpp +./tests/dump_load.o +./tests/two_dimensional.o +./tests/array-slice-ll-ref.h5 +./tests/dft-fields.o +./tests/pml.trs +./tests/Makefile.in +./tests/array-slice-ll +./tests/cyl-ellipsoid-ll.o +./tests/cyl-ellipsoid.ctl +./tests/h5test.cpp +./tests/h5test.log +./tests/array-slice-ll.cpp +./tests/integrate.trs +./tests/user-defined-material.o +./tests/symmetry.o +./tests/physical.o +./tests/symmetry.log +./tests/user-defined-material.cpp +./tests/absorber-1d-ll +./tests/integrate.log +./tests/symmetry.trs +./tests/two_dimensional.trs +./tests/harmonics +./tests/known_results +./tests/aniso_disp +./tests/flux.trs +./tests/pml.o +./tests/convergence_cyl_waveguide.o ./COPYRIGHT -./meep.pc -./.gitignore -./Makefile.in -./Makefile +./README.md +./.mailmap ./.clang-format -./.flake8 -./index.md -./config.status +./add_type_hints.xonsh +./ltmain.sh ./TODO -./codemeta.json -./monkeytype.sqlite3 -./README.md -./.sourcery.yaml -./configure.ac -./autogen.sh -./aclocal.m4 -./config.h -./py-compile +./Makefile.am +./test-driver +./index.md +./meep-pkgconfig +./.gitignore ./version.sh -./.pc -./.pc/python-distutils.patch -./.pc/python-distutils.patch/configure.ac -./.pc/python-distutils.patch/doc -./.pc/python-distutils.patch/doc/docs -./.pc/python-distutils.patch/doc/docs/setup.py -./.pc/python-distutils.patch/python -./.pc/python-distutils.patch/python/visualization.py -./.pc/.quilt_patches -./.pc/.quilt_series -./.pc/.version -./.pc/applied-patches -./stamp-h1 +./Makefile +./config.h ./debian +./debian/libmeep-mpi-default33.lintian-overrides +./debian/python3-meep-mpi-default +./debian/python3-meep-mpi-default/usr +./debian/python3-meep-mpi-default/usr/share +./debian/python3-meep-mpi-default/usr/share/doc +./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default +./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default/changelog +./debian/python3-meep-mpi-default/usr/share/doc/python3-meep-mpi-default/changelog.Debian +./debian/watch +./debian/python3-meep-mpi-default.prerm +./debian/changelog +./debian/tests +./debian/tests/autopkgtest-pkg-python.conf +./debian/source +./debian/source/format +./debian/source/lintian-overrides +./debian/debhelper-build-stamp +./debian/README.source +./debian/libmeep-mpi-default33.debhelper.log +./debian/docs +./debian/libmeep-mpi-default33 +./debian/libmeep-mpi-default33/usr +./debian/libmeep-mpi-default33/usr/share +./debian/libmeep-mpi-default33/usr/share/doc +./debian/libmeep-mpi-default33/usr/share/doc/libmeep-mpi-default33 +./debian/libmeep-mpi-default33/usr/share/doc/libmeep-mpi-default33/changelog +./debian/libmeep-mpi-default33/usr/share/doc/libmeep-mpi-default33/changelog.Debian +./debian/libmeep-mpi-default33.install +./debian/python3-meep-mpi-default.install ./debian/meep-mpi-default.manpages +./debian/meep-mpi-default.debhelper.log +./debian/libmeep-mpi-default-dev.debhelper.log +./debian/meep-mpi-default +./debian/meep-mpi-default/usr +./debian/meep-mpi-default/usr/share +./debian/meep-mpi-default/usr/share/doc +./debian/meep-mpi-default/usr/share/doc/meep-mpi-default +./debian/meep-mpi-default/usr/share/doc/meep-mpi-default/changelog +./debian/meep-mpi-default/usr/share/doc/meep-mpi-default/changelog.Debian ./debian/python3-meep-mpi-default.debhelper.log -./debian/python3-meep-mpi-default.install +./debian/meep-mpi-default.docs +./debian/not-installed +./debian/python3-meep-mpi-default.postinst ./debian/.debhelper ./debian/.debhelper/generated +./debian/.debhelper/generated/python3-meep-mpi-default +./debian/.debhelper/generated/python3-meep-mpi-default/dh_installchangelogs.dch.trimmed +./debian/.debhelper/generated/libmeep-mpi-default33 +./debian/.debhelper/generated/libmeep-mpi-default33/dh_installchangelogs.dch.trimmed +./debian/.debhelper/generated/meep-mpi-default +./debian/.debhelper/generated/meep-mpi-default/dh_installchangelogs.dch.trimmed ./debian/.debhelper/generated/libmeep-mpi-default-dev ./debian/.debhelper/generated/libmeep-mpi-default-dev/dh_installchangelogs.dch.trimmed ./debian/.debhelper/generated/_source @@ -3025,18 +3555,7 @@ ./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-8-4.7/usr/share/libctl ./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-8-4.7/usr/share/libctl/base ./debian/.debhelper/generated/_source/home/.cache/guile/ccache/3.0-LE-8-4.7/usr/share/libctl/base/include.scm.go -./debian/.debhelper/generated/libmeep-mpi-default33 -./debian/.debhelper/generated/libmeep-mpi-default33/dh_installchangelogs.dch.trimmed -./debian/.debhelper/generated/meep-mpi-default -./debian/.debhelper/generated/meep-mpi-default/dh_installchangelogs.dch.trimmed -./debian/.debhelper/generated/python3-meep-mpi-default -./debian/.debhelper/generated/python3-meep-mpi-default/dh_installchangelogs.dch.trimmed -./debian/docs -./debian/libmeep-mpi-default33.lintian-overrides -./debian/debhelper-build-stamp -./debian/libmeep-mpi-default-dev.debhelper.log -./debian/README.source -./debian/autoreconf.before +./debian/control ./debian/libmeep-mpi-default-dev ./debian/libmeep-mpi-default-dev/usr ./debian/libmeep-mpi-default-dev/usr/share @@ -3044,1370 +3563,887 @@ ./debian/libmeep-mpi-default-dev/usr/share/doc/libmeep-mpi-default-dev ./debian/libmeep-mpi-default-dev/usr/share/doc/libmeep-mpi-default-dev/changelog ./debian/libmeep-mpi-default-dev/usr/share/doc/libmeep-mpi-default-dev/changelog.Debian -./debian/patches -./debian/patches/python-distutils.patch -./debian/patches/i386-fix.patch -./debian/patches/series ./debian/upstream ./debian/upstream/metadata -./debian/python3-meep-mpi-default.prerm -./debian/libmeep-mpi-default33 -./debian/libmeep-mpi-default33/usr -./debian/libmeep-mpi-default33/usr/share -./debian/libmeep-mpi-default33/usr/share/doc -./debian/libmeep-mpi-default33/usr/share/doc/libmeep-mpi-default33 -./debian/libmeep-mpi-default33/usr/share/doc/libmeep-mpi-default33/changelog -./debian/libmeep-mpi-default33/usr/share/doc/libmeep-mpi-default33/changelog.Debian +./debian/rules +./debian/meep-mpi-default.install +./debian/copyright +./debian/meep-mpi-default.1 +./debian/autoreconf.after +./debian/libmeep-mpi-default-dev.install +./debian/patches +./debian/patches/series +./debian/patches/i386-fix.patch +./debian/patches/python-distutils.patch +./debian/autoreconf.before +./debian/salsa-ci.yml ./debian/tmp ./debian/tmp/usr +./debian/tmp/usr/share +./debian/tmp/usr/share/meep +./debian/tmp/usr/share/meep/materials.scm +./debian/tmp/usr/share/meep/casimir.scm +./debian/tmp/usr/share/meep/meep-enums.scm +./debian/tmp/usr/share/meep/meep.scm ./debian/tmp/usr/include ./debian/tmp/usr/include/meep ./debian/tmp/usr/include/meep/material_data.hpp ./debian/tmp/usr/include/meep/mympi.hpp -./debian/tmp/usr/include/meep/meepgeom.hpp -./debian/tmp/usr/include/meep/adjust_verbosity.hpp ./debian/tmp/usr/include/meep/vec.hpp ./debian/tmp/usr/include/meep/meep-config.h +./debian/tmp/usr/include/meep/adjust_verbosity.hpp +./debian/tmp/usr/include/meep/meepgeom.hpp ./debian/tmp/usr/include/meep.hpp -./debian/tmp/usr/share -./debian/tmp/usr/share/meep -./debian/tmp/usr/share/meep/meep-enums.scm -./debian/tmp/usr/share/meep/meep.scm -./debian/tmp/usr/share/meep/casimir.scm -./debian/tmp/usr/share/meep/materials.scm -./debian/tmp/usr/bin -./debian/tmp/usr/bin/meep ./debian/tmp/usr/lib +./debian/tmp/usr/lib/x86_64-linux-gnu +./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.la +./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.a +./debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig +./debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/meep.pc +./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.33 +./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so.33.0.0 +./debian/tmp/usr/lib/x86_64-linux-gnu/libmeep.so ./debian/tmp/usr/lib/python3.13 ./debian/tmp/usr/lib/python3.13/site-packages ./debian/tmp/usr/lib/python3.13/site-packages/meep +./debian/tmp/usr/lib/python3.13/site-packages/meep/source.py ./debian/tmp/usr/lib/python3.13/site-packages/meep/materials.py -./debian/tmp/usr/lib/python3.13/site-packages/meep/verbosity_mgr.py +./debian/tmp/usr/lib/python3.13/site-packages/meep/chunk_balancer.py ./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__ -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/verbosity_mgr.cpython-313.opt-1.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/chunk_balancer.cpython-313.opt-2.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/chunk_balancer.cpython-313.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/verbosity_mgr.cpython-313.pyc ./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/geom.cpython-313.opt-1.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/__init__.cpython-313.opt-2.pyc +./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/__init__.cpython-313.pyc +./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/verbosity_mgr.cpython-313.opt-2.pyc +./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/binary_partition_utils.cpython-313.pyc ./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/source.cpython-313.opt-1.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/geom.cpython-313.opt-2.pyc ./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/binary_partition_utils.cpython-313.opt-1.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/timing_measurements.cpython-313.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/materials.cpython-313.opt-1.pyc -./debian/tmp/usr/lib/python3.13/site-packages/meep/__pycache__/visualization.cpython-313.opt-1.pyc 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+./doc/docs/images/reflectance_angular_spectrum.png +./doc/docs/images/PML_failure.png +./doc/docs/images/planar_cavity_purcell_enhancement.png +./doc/docs/images/cyl_nonaxisymmetric_source_layout.png +./doc/docs/images/disc_radiation_layout.png +./doc/docs/images/Tut-ring-ez-0.118.gif +./doc/docs/images/dipole_extraction_eff_3D.png +./doc/docs/images/Field-visualization.jpg +./doc/docs/images/grating_diffraction_spectra.png +./doc/docs/images/triangular_lattice.png +./doc/docs/images/LED_layout_reciprocity.png +./doc/docs/images/Repulsive.jpg +./doc/docs/images/waveguide_rotation_glancing.png +./doc/docs/images/metasurface_lens_phasemap.png +./doc/docs/images/parallel_benchmark_runtime_vs_nprocs.png +./doc/docs/images/Material-dispersion-eps.png +./doc/docs/images/Tutorial-wvg-bent-eps-000000.00.png +./doc/docs/images/phase-in-material.png +./doc/docs/images/cyl_nonaxisymmetric_source_flux_vs_m.png +./doc/docs/images/zone_plate_schematic.png +./doc/docs/images/Chunks_NP8.png +./doc/docs/images/Fabryperot.gif +./doc/docs/images/Source_radiation_pattern.png +./doc/docs/images/meep_salt_comparison_full.png +./doc/docs/images/Tutorial-wvg-bent2-ez-000300.00.png +./doc/docs/images/ring_vary_radius.png +./doc/docs/images/multilevel_meep_n0_37_spectra.png +./doc/docs/images/mode_converter_sim_layout.png +./doc/docs/images/Example.jpg +./doc/docs/images/Material-dispersion-epsim.png +./doc/docs/images/parallel_benchmark_commcomp_vs_nprocs.png +./doc/docs/images/refl_coeff_vs_taper_length.png +./doc/docs/images/line_source_DCT_ampfunc_convergence.png +./doc/docs/images/dipole_extraction_eff_cyl.png +./doc/docs/images/single_mode_eigsource_pulse.png +./doc/docs/images/SiO2_materials_library.png +./doc/docs/images/disc_dipoles_radiation_pattern.png +./doc/docs/images/Yee-te.png +./doc/docs/images/cherenkov_radiation.png +./doc/docs/images/ring_subpixel_smoothing_rate.png +./doc/docs/images/mode_converter_refl_tran_spectra.png +./doc/docs/images/ring_resonator_gds_Hz.png +./doc/docs/images/directional_coupler_flux.png +./doc/docs/images/Ring-cyl-ez-0.176.png +./doc/docs/images/Ring-cyl-ez-0.148.png +./doc/docs/images/grating.png +./doc/docs/images/cylinder_cross_section.png +./doc/docs/images/Python-Tutorial-wvg-bent-ez-tslice.png +./doc/docs/images/stochastic_emitter_trials.png +./doc/docs/images/Near2far_simulation_geometry.png +./doc/docs/images/klayout_schematic.png +./doc/docs/images/material_grid.png +./doc/docs/images/Holey-wvg-cavity-hz-slice.png +./doc/docs/images/Holey-wvg-bands.png +./doc/docs/images/Chunks_YSymmetry.png +./doc/docs/images/Holey-wvg-kx=0.30-w=0.8838.gif +./doc/docs/images/mode_converter_worst_case_refl_tran.png +./doc/docs/images/pypackage_creation.png +./doc/docs/images/Vac.jpg +./doc/docs/images/Chunks_NP1.png +./doc/docs/images/chunk_balancer_timing_stats.gif +./doc/docs/images/Yee_grid_cylindrical.png +./doc/docs/images/oblique_source_multimode.png +./doc/docs/images/Tutorial-wvg-straight-ez-000200.00.png +./doc/docs/images/stochastic_emitter_forward_vs_backward_flux_spectrum.png +./doc/docs/images/mode_converter_designs.png +./doc/docs/images/ring_freq_vs_resolution.png +./doc/docs/images/Tut-ring-ez-0.147.gif +./doc/docs/images/coupler3D.png +./doc/docs/images/multi_mode_eigsource_pulse_B.png +./doc/docs/images/prism_epsilon.png +./doc/docs/images/grating_phasemap.png +./doc/docs/images/LED_layout.png +./doc/docs/images/grating_diffraction_spectra_n2f.png +./doc/docs/images/chunk_division_binary_tree.png +./doc/docs/images/extraction_eff_vs_dipole_height.png +./doc/docs/images/farfields_vs_DFTfields_holeycavity_mismatch.png +./doc/docs/images/waveguide-taper.png +./doc/docs/images/finite_grating_schematic.png +./doc/docs/images/sphere_epsilon.png +./doc/docs/images/eigenmode_source.png +./doc/docs/images/Dblocks-config.jpg +./doc/docs/images/Material-dispersion-bands.png +./doc/docs/images/BentFluxFieldsVisualization.png +./doc/docs/images/finite_grating_nperiods20.png +./doc/docs/images/multi_mode_eigsource_pulse_A.png +./doc/docs/images/swig_process.png +./doc/docs/images/Faraday-rotation-comparison.png +./doc/docs/images/PermittivityWithLabeledAxes.png +./doc/docs/images/eigenmode_planewave.png +./doc/docs/images/Holey-cavity-trans.png +./doc/docs/images/meep_salt_comparison_thresh.png +./doc/docs/images/Tutorial-wvg-ez.gif +./doc/docs/images/refl_coeff_flat_interface.png +./doc/docs/images/subpixel_smoothing.png +./doc/docs/images/Holey-wvg-kx=0.25-w=0.2506.gif +./doc/docs/images/mie_scattering_schematic.png +./doc/docs/images/Holey-wvg-bands-eps-000000.00.png +./doc/docs/images/Ring-cyl-ez-0.118.png +./doc/docs/images/parallel_benchmark_DFT.png +./doc/docs/images/antenna_pec_ground_plane.png +./doc/docs/images/farfields_vs_DFTfields_holeycavity.png +./doc/docs/images/mie_scattering.png +./doc/docs/images/residue_fields_bound_charges.png +./doc/docs/images/adaptive_chunk_layout.gif +./doc/docs/images/grating_0th_order_tran.png +./doc/docs/images/Yee-cube.png +./doc/docs/images/parallel_wvgs_s0.1.png +./doc/docs/images/parallel_benchmark_timestep.png +./doc/docs/images/Tut-bend-flux.png +./doc/docs/images/Holey-wvg-kx=0.10-w=0.4811.gif +./doc/docs/images/metasurface_lens_farfield.png +./doc/docs/images/Chunks_XYSymmetry.png +./doc/docs/images/Tutorial-wvg-bent-ez-tslice.png +./doc/docs/images/stochastic_emitter_line_normalized_flux_comparison.png +./doc/docs/images/chunk_balancer_variance.jpg +./doc/docs/images/3rd-harm-1d-vs-chi.png +./doc/docs/images/pwsource_Ez_PML.png +./doc/docs/images/Metalcavity_ldos.png +./doc/docs/images/Maxwell_equations_cylindrical.png +./doc/docs/images/Meep-logo.png +./doc/docs/images/gaussian_beam.png +./doc/docs/images/CWsolver-python.png +./doc/docs/images/polarization_grating_diffraction_orders.png +./doc/docs/images/polarization_grating_schematic.png +./doc/docs/images/CWsolver-scheme.png +./doc/docs/images/metasurface_lens_epsilon.png +./doc/docs/images/directional_coupler_field_profiles.png +./doc/docs/images/Holey-wvg-cavity-eps-000000.00.png +./doc/docs/images/pwsource_Ey_PML.png +./doc/docs/images/cwsrc_turnon.png +./doc/docs/images/power_density_cell.png +./doc/docs/images/ChunkingAndSymmetry.svg +./doc/docs/images/power_density_map.png +./doc/docs/images/coupler_refl_S11_S12.png +./doc/docs/images/N2ff_comp_cell.png +./doc/docs/images/C2_symmetry.png +./doc/docs/images/ChunkStatistics.png +./doc/docs/images/output_epsilon_kpoint.png +./doc/docs/images/Tut-ring-ez-0.175.gif +./doc/docs/images/pml_glancing_field.png +./doc/docs/Scheme_Tutorials +./doc/docs/Scheme_Tutorials/Mode_Decomposition.md +./doc/docs/Scheme_Tutorials/Eigenmode_Source.md +./doc/docs/Scheme_Tutorials/Near_to_Far_Field_Spectra.md +./doc/docs/Scheme_Tutorials/Resonant_Modes_and_Transmission_in_a_Waveguide_Cavity.md +./doc/docs/Scheme_Tutorials/Frequency_Domain_Solver.md +./doc/docs/Scheme_Tutorials/Multilevel_Atomic_Susceptibility.md +./doc/docs/Scheme_Tutorials/Casimir_Forces.md +./doc/docs/Scheme_Tutorials/Local_Density_of_States.md +./doc/docs/Scheme_Tutorials/Cylindrical_Coordinates.md +./doc/docs/Scheme_Tutorials/Custom_Source.md +./doc/docs/Scheme_Tutorials/Gyrotropic_Media.md +./doc/docs/Scheme_Tutorials/Optical_Forces.md +./doc/docs/Scheme_Tutorials/Material_Dispersion.md +./doc/docs/Scheme_Tutorials/Basics.md +./doc/docs/Scheme_Tutorials/Third_Harmonic_Generation.md +./doc/docs/License_and_Copyright.md +./doc/generate_py_api.py +./doc/meep-logos.svg +./compile +./.gitattributes +./config.log +./monkeytype.sqlite3 +./.flake8 +./config.guess +./Makefile.in +./py-compile +./codecov.yml +./configure.ac +./contrib +./contrib/build-meep.sh +./.travis.yml ./NEWS.md -./src -./src/integrate.cpp -./src/Makefile.am -./src/fix_boundary_sources.cpp -./src/monitor.lo -./src/casimir.o -./src/energy_and_flux.o -./src/bicgstab.cpp -./src/boundaries.o -./src/structure.cpp -./src/multilevel-atom.lo -./src/material_data.hpp -./src/step_db.o -./src/meepgeom.o -./src/mpb.cpp -./src/step.lo -./src/material_data.cpp -./src/integrate2.lo -./src/update_eh.cpp -./src/fields_dump.o -./src/dft_ldos.cpp -./src/energy_and_flux.lo -./src/cw_fields.cpp -./src/step_generic_stride1.cpp -./src/fix_boundary_sources.lo -./src/step.o -./src/sources.o -./src/update_pols.lo -./src/meepgeom.hpp -./src/structure_dump.lo -./src/sphere-quad.o -./src/Makefile.in -./src/meep -./src/meep/mympi.hpp -./src/meep/meep-config.h.in -./src/meep/vec.hpp -./src/meep/meep-config.h -./src/Makefile -./src/output_directory.cpp -./src/integrate.o -./src/bands.cpp -./src/near2far.o -./src/fields.o -./src/step_generic.cpp -./src/vec.o -./src/time.o -./src/material_data.o -./src/initialize.cpp -./src/meep.hpp -./src/structure.o -./src/multilevel-atom.cpp -./src/structure.lo -./src/mpb.lo -./src/array_slice.lo -./src/monitor.cpp -./src/GDSIIgeom.o -./src/time.lo -./src/array_slice.cpp -./src/loop_in_chunks.o -./src/integrate2.o -./src/dft.lo -./src/initialize.o -./src/time.cpp -./src/random.lo -./src/cw_fields.o -./src/update_pols.o -./src/stress.lo -./src/sphere_quad -./src/boundaries.lo -./src/loop_in_chunks.lo -./src/h5fields.o -./src/susceptibility.cpp -./src/step.cpp -./src/output_directory.lo -./src/boundaries.cpp -./src/GDSIIgeom.cpp -./src/bicgstab.lo -./src/meep_internals.hpp -./src/structure_dump.cpp -./src/bicgstab.hpp -./src/step_db.cpp -./src/anisotropic_averaging.o -./src/fields_dump.cpp -./src/sources.lo -./src/vec.cpp -./src/libmeep.la -./src/sources.cpp -./src/mympi.cpp -./src/structure_dump.o -./src/fix_boundary_sources.o -./src/support -./src/support/Makefile.am -./src/support/mt19937ar.o -./src/support/libsupport.la -./src/support/Makefile.in -./src/support/Makefile -./src/support/mt19937ar.lo -./src/support/mt19937ar.c -./src/support/meep_mt.h -./src/support/.libs -./src/support/.libs/mt19937ar.o -./src/support/.libs/libsupport.la -./src/support/.libs/libsupport.a -./src/energy_and_flux.cpp -./src/casimir.cpp -./src/anisotropic_averaging.lo -./src/h5file.lo -./src/cw_fields.lo -./src/step_generic_stride1.lo -./src/random.cpp -./src/h5file.o -./src/bands.lo -./src/step_db.lo -./src/h5fields.cpp -./src/sphere-quad.h -./src/adjust_verbosity.hpp -./src/bands.o -./src/update_eh.lo -./src/sphere-quad.cpp -./src/stress.cpp -./src/h5fields.lo -./src/integrate.lo -./src/mympi.lo -./src/step_generic.o -./src/GDSIIgeom.lo -./src/monitor.o -./src/meepgeom.cpp -./src/dft_ldos.lo -./src/step_generic.lo -./src/h5file.cpp -./src/bicgstab.o -./src/step_generic_stride1.o -./src/mpb.o -./src/multilevel-atom.o -./src/near2far.cpp -./src/initialize.lo -./src/near2far.lo -./src/update_pols.cpp -./src/integrate2.cpp -./src/.libs -./src/.libs/libmeep.so.33 -./src/.libs/casimir.o -./src/.libs/energy_and_flux.o -./src/.libs/boundaries.o -./src/.libs/libmeep.a -./src/.libs/libmeep.lai -./src/.libs/step_db.o -./src/.libs/meepgeom.o -./src/.libs/fields_dump.o -./src/.libs/step.o -./src/.libs/sources.o -./src/.libs/integrate.o -./src/.libs/near2far.o -./src/.libs/fields.o -./src/.libs/vec.o -./src/.libs/time.o -./src/.libs/material_data.o -./src/.libs/structure.o -./src/.libs/GDSIIgeom.o -./src/.libs/libmeep.so -./src/.libs/loop_in_chunks.o -./src/.libs/integrate2.o -./src/.libs/initialize.o -./src/.libs/cw_fields.o -./src/.libs/update_pols.o -./src/.libs/h5fields.o -./src/.libs/anisotropic_averaging.o -./src/.libs/libmeep.la -./src/.libs/structure_dump.o -./src/.libs/fix_boundary_sources.o -./src/.libs/h5file.o -./src/.libs/bands.o -./src/.libs/step_generic.o -./src/.libs/monitor.o -./src/.libs/bicgstab.o -./src/.libs/step_generic_stride1.o -./src/.libs/mpb.o -./src/.libs/multilevel-atom.o -./src/.libs/libmeep.so.33.0.0 -./src/.libs/array_slice.o -./src/.libs/update_eh.o -./src/.libs/output_directory.o -./src/.libs/dft.o -./src/.libs/dft_ldos.o -./src/.libs/stress.o -./src/.libs/mympi.o -./src/.libs/random.o -./src/.libs/susceptibility.o -./src/susceptibility.lo -./src/array_slice.o -./src/anisotropic_averaging.cpp -./src/fields.cpp -./src/update_eh.o -./src/output_directory.o -./src/fields_dump.lo -./src/casimir.lo -./src/dft.o -./src/material_data.lo -./src/dft_ldos.o -./src/stress.o -./src/vec.lo -./src/mympi.o -./src/dft.cpp -./src/fields.lo -./src/random.o -./src/loop_in_chunks.cpp -./src/susceptibility.o -./src/meepgeom.lo -./missing -./scheme -./scheme/meep_op_renames.i -./scheme/meep_renames.i -./scheme/Makefile.am -./scheme/meep_wrap.cxx -./scheme/structure.cpp -./scheme/meep-ctl-swig.hpp -./scheme/Makefile.in -./scheme/meep -./scheme/Makefile -./scheme/meep_enum_renames.i -./scheme/meep_wrap.cxx.bak -./scheme/meep-main.o -./scheme/meep-enums.scm -./scheme/meep-meep.o -./scheme/meep.scm -./scheme/meep_wrap.cxx.orig -./scheme/main.cpp -./scheme/ctl-io.h -./scheme/casimir.scm -./scheme/meep-meep_wrap.o -./scheme/meep_swig_bug_workaround.i -./scheme/meep-geom.o -./scheme/ctl-io.i -./scheme/meep_wrap.patch -./scheme/meep-ctl-const.hpp -./scheme/meep-ctl-io.o -./scheme/ctl-io.cpp -./scheme/materials.scm -./scheme/geom.cpp -./scheme/examples -./scheme/examples/mie-scattering.ctl -./scheme/examples/solve-cw.ctl -./scheme/examples/3rd-harm-1d.ctl -./scheme/examples/holey-wvg-bands.ctl -./scheme/examples/refl-angular-kz2d.ctl -./scheme/examples/holey-wvg-cavity.ctl -./scheme/examples/cavity-farfield.ctl -./scheme/examples/oblique-source.ctl -./scheme/examples/binary_grating_n2f.ctl -./scheme/examples/faraday-rotation.ctl -./scheme/examples/cherenkov-radiation.ctl -./scheme/examples/mode-coeffs.ctl -./scheme/examples/polarization_grating.ctl -./scheme/examples/binary_grating_phasemap.ctl -./scheme/examples/metasurface_lens_farfield.ctl -./scheme/examples/metal-cavity-ldos.ctl -./scheme/examples/material-dispersion.ctl -./scheme/examples/parallel-wvgs-mpb.ctl -./scheme/examples/mode-decomposition.ctl -./scheme/examples/finite_grating.ctl -./scheme/examples/cylinder-cross-section.ctl -./scheme/examples/refl-angular.ctl -./scheme/examples/ring-cyl.ctl -./scheme/examples/pw-source.ctl -./scheme/examples/chirped-pulse.ctl -./scheme/examples/wvg_src.ctl -./scheme/examples/bent-waveguide.ctl -./scheme/examples/zone-plate.ctl -./scheme/examples/stochastic-emitter.ctl -./scheme/examples/straight-waveguide.ctl -./scheme/examples/metasurface_lens_phasemap.ctl -./scheme/examples/ring.ctl -./scheme/examples/multilevel-atom.ctl -./scheme/examples/oblique-planewave.ctl -./scheme/examples/antenna-radiation.ctl -./scheme/examples/refl-quartz.ctl -./scheme/examples/perturbation-theory-2d.ctl -./scheme/examples/perturbation-theory.ctl -./scheme/examples/group-velocity.ctl -./scheme/examples/absorbed-power-density.ctl -./scheme/examples/bend-flux.ctl -./scheme/examples/differential-cross-section.ctl -./scheme/examples/parallel-wvgs-force.ctl -./scheme/examples/gaussian-beam.ctl -./scheme/examples/binary_grating_oblique.ctl -./scheme/examples/binary_grating.ctl -./scheme/meep.cpp -./scheme/meep-ctl.hpp -./scheme/.libs -./scheme/.libs/meep -./scheme/meep-structure.o -./scheme/meep.i -./scheme/meep.scm.in rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyc rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.pyo rm -f debian/tmp/usr/lib/python*/site-packages/meep/*.a @@ -4436,28 +4472,28 @@ debian/rules override_dh_shlibdeps make[1]: Entering directory '/build/reproducible-path/meep-mpi-default-1.29.0' dh_shlibdeps -dpkg-shlibdeps: warning: debian/python3-meep-mpi-default/usr/lib/python3/dist-packages/meep/_meep.so.33.0.0 contains an unresolvable reference to symbol PyExc_RuntimeError: it's probably a plugin +dpkg-shlibdeps: warning: debian/python3-meep-mpi-default/usr/lib/python3/dist-packages/meep/_meep.so.33.0.0 contains an unresolvable reference to symbol PyFloat_FromDouble: it's probably a plugin dpkg-shlibdeps: warning: 107 other similar warnings have been skipped (use -v to see them all) dh_numpy3 make[1]: Leaving directory '/build/reproducible-path/meep-mpi-default-1.29.0' dh_installdeb dh_gencontrol -dpkg-gencontrol: warning: package libmeep-mpi-default33: substitution variable ${python3:Depends} unused, but is defined -dpkg-gencontrol: warning: package python3-meep-mpi-default: substitution variable ${python3:Depends} unused, but is defined -dpkg-gencontrol: warning: package libmeep-mpi-default-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package meep-mpi-default: substitution variable ${python3:Depends} unused, but is defined +dpkg-gencontrol: warning: package libmeep-mpi-default-dev: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package libmeep-mpi-default33: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package python3-meep-mpi-default: substitution variable ${python3:Depends} unused, but is defined dpkg-gencontrol: warning: package meep-mpi-default: substitution variable ${python3:Depends} unused, but is defined +dpkg-gencontrol: warning: package python3-meep-mpi-default: substitution variable ${python3:Depends} unused, but is defined +dpkg-gencontrol: warning: package libmeep-mpi-default33: substitution variable ${python3:Depends} unused, but is defined dh_md5sums dh_builddeb +dpkg-deb: building package 'meep-mpi-default-dbgsym' in '../meep-mpi-default-dbgsym_1.29.0-1_amd64.deb'. dpkg-deb: building package 'libmeep-mpi-default33-dbgsym' in '../libmeep-mpi-default33-dbgsym_1.29.0-1_amd64.deb'. dpkg-deb: building package 'meep-mpi-default' in '../meep-mpi-default_1.29.0-1_amd64.deb'. -dpkg-deb: building package 'meep-mpi-default-dbgsym' in '../meep-mpi-default-dbgsym_1.29.0-1_amd64.deb'. dpkg-deb: building package 'libmeep-mpi-default-dev' in '../libmeep-mpi-default-dev_1.29.0-1_amd64.deb'. -dpkg-deb: building package 'python3-meep-mpi-default' in '../python3-meep-mpi-default_1.29.0-1_amd64.deb'. dpkg-deb: building package 'python3-meep-mpi-default-dbgsym' in '../python3-meep-mpi-default-dbgsym_1.29.0-1_amd64.deb'. dpkg-deb: building package 'libmeep-mpi-default33' in '../libmeep-mpi-default33_1.29.0-1_amd64.deb'. +dpkg-deb: building package 'python3-meep-mpi-default' in '../python3-meep-mpi-default_1.29.0-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../meep-mpi-default_1.29.0-1_amd64.buildinfo dpkg-genchanges --build=binary -O../meep-mpi-default_1.29.0-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -4465,12 +4501,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1561773/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3254769 and its subdirectories -I: Current time: Sun Mar 9 15:01:12 -12 2025 -I: pbuilder-time-stamp: 1741575672 +I: removing directory /srv/workspace/pbuilder/1561773 and its subdirectories +I: Current time: Mon Apr 13 00:00:55 +14 2026 +I: pbuilder-time-stamp: 1775988055