Diff of the two buildlogs: -- --- b1/build.log 2025-02-28 14:08:47.280033163 +0000 +++ b2/build.log 2025-02-28 14:09:21.850467872 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 28 02:05:49 -12 2025 -I: pbuilder-time-stamp: 1740751549 +I: Current time: Fri Apr 3 10:31:49 +14 2026 +I: pbuilder-time-stamp: 1775161909 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying clang.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2505358/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Apr 2 20:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=20 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='57003a18872a4bf6a5863c391e9ba6d2' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2505358' - PS1='# ' - PS2='> ' + INVOCATION_ID=ea37c6c8383c4139816649497e415358 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3052303 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oiAyZMB4/pbuilderrc_krcj --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oiAyZMB4/b1 --logfile b1/build.log ncbi-seg_0.0.20000620-7.dsc' - SUDO_GID='110' - SUDO_UID='105' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oiAyZMB4/pbuilderrc_UB2J --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oiAyZMB4/b2 --logfile b2/build.log ncbi-seg_0.0.20000620-7.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos1-amd64 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.9+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.9-1~bpo12+1 (2025-01-19) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2505358/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -141,7 +173,7 @@ Get: 28 http://deb.debian.org/debian trixie/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian trixie/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian trixie/main amd64 debhelper all 13.24.1 [920 kB] -Fetched 20.6 MB in 3s (6644 kB/s) +Fetched 20.6 MB in 4s (5314 kB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19802 files and directories currently installed.) @@ -276,7 +308,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ncbi-seg-0.0.20000620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ncbi-seg_0.0.20000620-7_source.changes dpkg-buildpackage: info: source package ncbi-seg dpkg-buildpackage: info: source version 0.0.20000620-7 dpkg-buildpackage: info: source distribution unstable @@ -327,13 +363,13 @@ config.status: creating Makefile config.status: executing depfiles commands dh_auto_build - make -j20 + make -j42 make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o seg.o seg.c gcc -DPACKAGE_NAME=\"ncbi-seg\" -DPACKAGE_TARNAME=\"ncbi-seg\" -DPACKAGE_VERSION=\"0.0.20000620\" -DPACKAGE_STRING=\"ncbi-seg\ 0.0.20000620\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DPACKAGE=\"ncbi-seg\" -DVERSION=\"0.0.20000620\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/ncbi-seg-0.0.20000620=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wno-error=implicit-function-declaration -Wno-error=implicit-int -c -o genwin.o genwin.c sed -e 's|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/ncbi-seg|g;s|__pkgdatadir__|/usr/share/ncbi-seg|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|0.0.20000620|g;' "ncbi-seg.pod" | \ pod2man -c 'User Commands' -r "0.0.20000620" -name NCBI-SEG > "ncbi-seg.1" -In file included from seg.c:10: +In file included from genwin.c:9: genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] 146 | extern closedbase(); | ^~~~~~~~~~ @@ -352,6 +388,10 @@ genwin.h:154:18: warning: type defaults to 'int' in declaration of 'stateon' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~~~ +In file included from seg.c:10: +genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] + 146 | extern closedbase(); + | ^~~~~~~~~~ genwin.h:154:29: warning: type defaults to 'int' in declaration of 'enton' [-Wimplicit-int] 154 | extern compon(), stateon(), enton(); | ^~~~~ @@ -361,22 +401,18 @@ genwin.h:160:8: warning: type defaults to 'int' in declaration of 'upper' [-Wimplicit-int] 160 | extern upper(), lower(), findchar(); | ^~~~~ -genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] - 160 | extern upper(), lower(), findchar(); - | ^~~~~ -genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] - 160 | extern upper(), lower(), findchar(); - | ^~~~~~~~ -In file included from genwin.c:9: -genwin.h:146:8: warning: type defaults to 'int' in declaration of 'closedbase' [-Wimplicit-int] - 146 | extern closedbase(); - | ^~~~~~~~~~ genwin.h:149:8: warning: type defaults to 'int' in declaration of 'closeseq' [-Wimplicit-int] 149 | extern closeseq(); | ^~~~~~~~ +genwin.h:160:17: warning: type defaults to 'int' in declaration of 'lower' [-Wimplicit-int] + 160 | extern upper(), lower(), findchar(); + | ^~~~~ genwin.h:152:8: warning: type defaults to 'int' in declaration of 'shiftwin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ +genwin.h:160:26: warning: type defaults to 'int' in declaration of 'findchar' [-Wimplicit-int] + 160 | extern upper(), lower(), findchar(); + | ^~~~~~~~ genwin.h:152:20: warning: type defaults to 'int' in declaration of 'closewin' [-Wimplicit-int] 152 | extern shiftwin(), closewin(); | ^~~~~~~~ @@ -438,6 +474,26 @@ genwin.c:545:1: warning: return type defaults to 'int' [-Wimplicit-int] 545 | readhdr(seq) | ^~~~~~~ +genwin.c: In function 'readhdr': +genwin.c:670:10: warning: implicit declaration of function 'skipline' [-Wimplicit-function-declaration] + 670 | skipline(fp); + | ^~~~~~~~ +genwin.c: At top level: +genwin.c:684:1: warning: return type defaults to 'int' [-Wimplicit-int] + 684 | skipline(fp) + | ^~~~~~~~ +genwin.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] + 718 | readseq(seq) + | ^~~~~~~ +genwin.c:794:8: warning: return type defaults to 'int' [-Wimplicit-int] + 794 | extern upper(string, len) + | ^~~~~ +genwin.c:807:8: warning: return type defaults to 'int' [-Wimplicit-int] + 807 | extern lower(string, len) + | ^~~~~ +genwin.c:862:1: warning: return type defaults to 'int' [-Wimplicit-int] + 862 | tfree(ptr) + | ^~~~~ seg.c:49:1: warning: return type defaults to 'int' [-Wimplicit-int] 49 | main(argc, argv) | ^~~~ @@ -484,35 +540,21 @@ 137 | while ((c=getopt(nargc, nargv, "m:olhaxpqc:nt:"))!=-1) | ^~~~~~ | getsubopt -genwin.c: In function 'readhdr': seg.c: At top level: seg.c:210:1: warning: return type defaults to 'int' [-Wimplicit-int] 210 | segseq(seq, segs, offset) | ^~~~~~ -genwin.c:670:10: warning: implicit declaration of function 'skipline' [-Wimplicit-function-declaration] - 670 | skipline(fp); - | ^~~~~~~~ -genwin.c: At top level: seg.c: In function 'segseq': seg.c:233:16: warning: implicit declaration of function 'findlo' [-Wimplicit-function-declaration] 233 | loi = findlo(i, lowlim, H); | ^~~~~~ -genwin.c:684:1: warning: return type defaults to 'int' [-Wimplicit-int] - 684 | skipline(fp) - | ^~~~~~~~ seg.c:234:16: warning: implicit declaration of function 'findhi'; did you mean 'findchar'? [-Wimplicit-function-declaration] 234 | hii = findhi(i, last, H); | ^~~~~~ | findchar -genwin.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] - 718 | readseq(seq) - | ^~~~~~~ seg.c:239:10: warning: implicit declaration of function 'trim' [-Wimplicit-function-declaration] 239 | trim(openwin(seq, leftend, rightend-leftend+1), &leftend, &rightend); | ^~~~ -genwin.c:794:8: warning: return type defaults to 'int' [-Wimplicit-int] - 794 | extern upper(string, len) - | ^~~~~ seg.c:252:21: warning: implicit declaration of function 'appendseg' [-Wimplicit-function-declaration] 252 | else appendseg(*segs, leftsegs); | ^~~~~~~~~ @@ -568,18 +610,12 @@ seg.c:718:1: warning: return type defaults to 'int' [-Wimplicit-int] 718 | pretreereport(seq, segs) | ^~~~~~~~~~~~~ -genwin.c:807:8: warning: return type defaults to 'int' [-Wimplicit-int] - 807 | extern lower(string, len) - | ^~~~~ seg.c:811:1: warning: return type defaults to 'int' [-Wimplicit-int] 811 | space(len) | ^~~~~ seg.c:832:1: warning: return type defaults to 'int' [-Wimplicit-int] 832 | seqout(seq, hilo, begin, end) | ^~~~~~ -genwin.c:862:1: warning: return type defaults to 'int' [-Wimplicit-int] - 862 | tfree(ptr) - | ^~~~~ seg.c:906:1: warning: return type defaults to 'int' [-Wimplicit-int] 906 | appendseg(segs, seg) | ^~~~~~~~~ @@ -595,7 +631,7 @@ create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/ncbi-seg/ - make -j20 install DESTDIR=/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg AM_UPDATE_INFO_DIR=no + make -j42 install DESTDIR=/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' make[2]: Entering directory '/build/reproducible-path/ncbi-seg-0.0.20000620' /usr/bin/mkdir -p '/build/reproducible-path/ncbi-seg-0.0.20000620/debian/ncbi-seg/usr/bin' @@ -622,8 +658,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-7_amd64.deb'. dpkg-deb: building package 'ncbi-seg' in '../ncbi-seg_0.0.20000620-7_amd64.deb'. +dpkg-deb: building package 'ncbi-seg-dbgsym' in '../ncbi-seg-dbgsym_0.0.20000620-7_amd64.deb'. dpkg-genbuildinfo --build=binary -O../ncbi-seg_0.0.20000620-7_amd64.buildinfo dpkg-genchanges --build=binary -O../ncbi-seg_0.0.20000620-7_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -631,12 +667,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3052303/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2505358 and its subdirectories -I: Current time: Fri Feb 28 02:08:46 -12 2025 -I: pbuilder-time-stamp: 1740751726 +I: removing directory /srv/workspace/pbuilder/3052303 and its subdirectories +I: Current time: Fri Apr 3 10:32:21 +14 2026 +I: pbuilder-time-stamp: 1775161941