Diff of the two buildlogs: -- --- b1/build.log 2025-03-06 19:13:43.352533343 +0000 +++ b2/build.log 2025-03-06 19:15:21.920096136 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 8 13:35:35 -12 2026 -I: pbuilder-time-stamp: 1775698535 +I: Current time: Fri Mar 7 09:13:45 +14 2025 +I: pbuilder-time-stamp: 1741288425 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,51 +29,83 @@ dpkg-source: info: applying fix-arm64.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3991974/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/D01_modify_environment starting +debug: Running on infom01-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 6 19:13 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='bda6e8c42da744c98e4a29886641f803' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3991974' - PS1='# ' - PS2='> ' + INVOCATION_ID=ec47595b50b04a6eaf705fb8d5c13738 + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2045956 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UKaKkHd6/pbuilderrc_q9Qp --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UKaKkHd6/b1 --logfile b1/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.UKaKkHd6/pbuilderrc_QOBI --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.UKaKkHd6/b2 --logfile b2/build.log ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' I: uname -a - Linux infom02-amd64 6.12.12+bpo-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.12-1~bpo12+1 (2025-02-23) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3991974/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -229,7 +261,7 @@ Get: 106 http://deb.debian.org/debian trixie/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get: 107 http://deb.debian.org/debian trixie/main amd64 libssw-dev amd64 1.1-15+b2 [24.6 kB] Get: 108 http://deb.debian.org/debian trixie/main amd64 libtclap-dev amd64 1.2.5-1+b2 [3359 kB] -Fetched 60.3 MB in 3s (17.8 MB/s) +Fetched 60.3 MB in 2s (31.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19800 files and directories currently installed.) @@ -676,7 +708,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ngmlr_0.2.7+git20210816.a2a31fb+dfsg-2_source.changes dpkg-buildpackage: info: source package ngmlr dpkg-buildpackage: info: source version 0.2.7+git20210816.a2a31fb+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -734,7 +770,7 @@ to work with policies introduced by or earlier. --- Configuring done (0.9s) +-- Configuring done (0.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -770,29 +806,29 @@ cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && touch /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp make[3]: Entering directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu' -[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -[ 8%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o -[ 16%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -[ 20%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp +[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o +[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o +[ 12%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o +[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o +[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/CS.cpp.o +[ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o +[ 24%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o +[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o +[ 24%] Built target recompile_always +[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o +[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrix.cpp -[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/Logging.cpp.o -[ 28%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -[ 32%] Building CXX object src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ArgParser.cpp.o -MF CMakeFiles/ngmlr.dir/ArgParser.cpp.o.d -o CMakeFiles/ngmlr.dir/ArgParser.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ArgParser.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CSstatic.cpp.o -MF CMakeFiles/ngmlr.dir/CSstatic.cpp.o.d -o CMakeFiles/ngmlr.dir/CSstatic.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CSstatic.cpp -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp +[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/CS.cpp.o -MF CMakeFiles/ngmlr.dir/CS.cpp.o.d -o CMakeFiles/ngmlr.dir/CS.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/CS.cpp +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/Logging.cpp.o -MF CMakeFiles/ngmlr.dir/Logging.cpp.o.d -o CMakeFiles/ngmlr.dir/Logging.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlign.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlign.cpp cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/MappedRead.cpp.o -MF CMakeFiles/ngmlr.dir/MappedRead.cpp.o.d -o CMakeFiles/ngmlr.dir/MappedRead.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/MappedRead.cpp -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -MF CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o.d -o CMakeFiles/ngmlr.dir/ConvexAlignFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ConvexAlignFast.cpp -[ 32%] Built target recompile_always -[ 36%] Building CXX object src/CMakeFiles/ngmlr.dir/main.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/main.cpp.o -MF CMakeFiles/ngmlr.dir/main.cpp.o.d -o CMakeFiles/ngmlr.dir/main.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp -[ 40%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -[ 44%] Building CXX object src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -MF CMakeFiles/ngmlr.dir/LinearRegression.cpp.o.d -o CMakeFiles/ngmlr.dir/LinearRegression.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/LinearRegression.cpp -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentMatrixFast.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentMatrixFast.cpp [ 48%] Building CXX object src/CMakeFiles/ngmlr.dir/NGM.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGM.cpp.o -MF CMakeFiles/ngmlr.dir/NGM.cpp.o.d -o CMakeFiles/ngmlr.dir/NGM.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGM.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/main.cpp:56:153: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] @@ -803,6 +839,8 @@ | ^~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/NGMTask.cpp.o -MF CMakeFiles/ngmlr.dir/NGMTask.cpp.o.d -o CMakeFiles/ngmlr.dir/NGMTask.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/NGMTask.cpp +[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp: In function ‘std::string add_timestamp(std::string)’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/Logging.cpp:118:41: warning: ‘%02i’ directive writing between 2 and 11 bytes into a region of size between 8 and 15 [-Wformat-overflow=] 118 | sprintf(timestamp, "%4i-%02i-%02i_%02i-%02i-%02i", tm->tm_year + 1900, tm->tm_mon + 1, tm->tm_mday, tm->tm_hour, tm->tm_min, @@ -821,8 +859,6 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ -[ 56%] Building CXX object src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/AlignmentBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/AlignmentBuffer.cpp [ 60%] Building CXX object src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -MF CMakeFiles/ngmlr.dir/PrefixTable.cpp.o.d -o CMakeFiles/ngmlr.dir/PrefixTable.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/PrefixTable.cpp [ 64%] Building CXX object src/CMakeFiles/ngmlr.dir/ReadProvider.cpp.o @@ -837,13 +873,13 @@ cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/OutputReadBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp [ 84%] Building CXX object src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -MF CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o.d -o CMakeFiles/ngmlr.dir/ScoreBuffer.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/ScoreBuffer.cpp +[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o +cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp: In destructor ‘OutputReadBuffer::~OutputReadBuffer()’: /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: warning: ‘throw’ will always call ‘terminate’ [-Wterminate] 17 | throw "Elements left in buffer!"; | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/OutputReadBuffer.cpp:17:17: note: in C++11 destructors default to ‘noexcept’ -[ 88%] Building CXX object src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -MF CMakeFiles/ngmlr.dir/StrippedSW.cpp.o.d -o CMakeFiles/ngmlr.dir/StrippedSW.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/StrippedSW.cpp [ 92%] Building CXX object src/CMakeFiles/ngmlr.dir/unix.cpp.o cd /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/obj-x86_64-linux-gnu/src && /usr/bin/c++ -I/usr/include/htslib -I/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/../lib -g -O2 -ffile-prefix-map=/build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -MD -MT src/CMakeFiles/ngmlr.dir/unix.cpp.o -MF CMakeFiles/ngmlr.dir/unix.cpp.o.d -o CMakeFiles/ngmlr.dir/unix.cpp.o -c /build/reproducible-path/ngmlr-0.2.7+git20210816.a2a31fb+dfsg/src/unix.cpp [ 96%] Building CXX object src/CMakeFiles/ngmlr.dir/unix_threads.cpp.o @@ -901,12 +937,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2045956/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3991974 and its subdirectories -I: Current time: Wed Apr 8 13:36:42 -12 2026 -I: pbuilder-time-stamp: 1775698602 +I: removing directory /srv/workspace/pbuilder/2045956 and its subdirectories +I: Current time: Fri Mar 7 09:15:21 +14 2025 +I: pbuilder-time-stamp: 1741288521