Diff of the two buildlogs: -- --- b1/build.log 2025-08-03 18:41:33.808905287 +0000 +++ b2/build.log 2025-08-03 18:46:37.353301374 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Aug 3 06:33:12 -12 2025 -I: pbuilder-time-stamp: 1754245992 +I: Current time: Sun Sep 6 15:04:35 +14 2026 +I: pbuilder-time-stamp: 1788656675 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying syntax_warning.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/930392/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/D01_modify_environment starting +debug: Running on ionos15-amd64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 6 01:04 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='amd64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=40 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='amd64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="x86_64-pc-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=amd64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=42 ' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=x86_64 + HOST_ARCH=amd64 IFS=' ' - INVOCATION_ID='48a8352811834912ad1c2c42bd7ef410' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='930392' - PS1='# ' - PS2='> ' + INVOCATION_ID=261189fe2cde4b8daed7fb9cc693f37b + LANG=C + LANGUAGE=et_EE:et + LC_ALL=C + MACHTYPE=x86_64-pc-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=964171 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.swWN69EH/pbuilderrc_CTTd --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.swWN69EH/b1 --logfile b1/build.log pairtools_1.1.3-1.dsc' - SUDO_GID='111' - SUDO_UID='106' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://46.16.76.132:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.swWN69EH/pbuilderrc_KO7H --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.swWN69EH/b2 --logfile b2/build.log pairtools_1.1.3-1.dsc' + SUDO_GID=111 + SUDO_UID=106 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://213.165.73.152:3128 I: uname -a - Linux ionos11-amd64 6.1.0-37-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.140-1 (2025-05-22) x86_64 GNU/Linux + Linux i-capture-the-hostname 6.12.33+deb12-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.12.33-1~bpo12+1 (2025-07-09) x86_64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/930392/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -380,7 +412,7 @@ Get: 231 http://deb.debian.org/debian trixie/main amd64 python3-pytest all 8.3.5-2 [250 kB] Get: 232 http://deb.debian.org/debian trixie/main amd64 python3-standard-pipes all 3.13.0-5 [7376 B] Get: 233 http://deb.debian.org/debian trixie/main amd64 python3-yaml amd64 6.0.2-1+b2 [136 kB] -Fetched 146 MB in 33s (4378 kB/s) +Fetched 146 MB in 6s (23.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19851 files and directories currently installed.) @@ -1133,8 +1165,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Aug 3 18:36:47 UTC 2025. -Universal Time is now: Sun Aug 3 18:36:47 UTC 2025. +Local time is now: Sun Sep 6 01:07:12 UTC 2026. +Universal Time is now: Sun Sep 6 01:07:12 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1351,7 +1383,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pairtools-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pairtools_1.1.3-1_source.changes +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pairtools-1.1.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pairtools_1.1.3-1_source.changes dpkg-buildpackage: info: source package pairtools dpkg-buildpackage: info: source version 1.1.3-1 dpkg-buildpackage: info: source distribution unstable @@ -1394,8 +1430,8 @@ ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). - By 2026-Feb-18, you need to update your project and remove deprecated calls - or your builds will no longer be supported. + This deprecation is overdue, please update your project and remove deprecated + calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** @@ -1432,41 +1468,41 @@ running build running build_py creating build/lib.linux-x86_64-cpython-313/pairtools +copying pairtools/__main__.py -> build/lib.linux-x86_64-cpython-313/pairtools copying pairtools/__init__.py -> build/lib.linux-x86_64-cpython-313/pairtools copying pairtools/_logging.py -> build/lib.linux-x86_64-cpython-313/pairtools -copying pairtools/__main__.py -> build/lib.linux-x86_64-cpython-313/pairtools -creating build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/__init__.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/stats.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/pairsam_format.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/dedup.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/pairsio.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/restrict.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/fileio.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/filterbycov.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/scaling.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/parse.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/headerops.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/select.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib -copying pairtools/lib/phase.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib creating build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/__init__.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/stats.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/sort.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/dedup.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/restrict.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/flip.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/dedup.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/parse.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/scaling.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/markasdup.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/split.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/header.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/merge.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/filterbycov.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/scaling.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli -copying pairtools/cli/parse.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/sample.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/parse2.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/__init__.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/select.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/merge.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/filterbycov.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/stats.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/restrict.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +copying pairtools/cli/header.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli copying pairtools/cli/phase.py -> build/lib.linux-x86_64-cpython-313/pairtools/cli +creating build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/dedup.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/parse.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/scaling.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/fileio.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/__init__.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/pairsam_format.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/select.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/headerops.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/filterbycov.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/pairsio.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/stats.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/restrict.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib +copying pairtools/lib/phase.py -> build/lib.linux-x86_64-cpython-313/pairtools/lib running egg_info creating pairtools.egg-info writing pairtools.egg-info/PKG-INFO @@ -1534,53 +1570,53 @@ running install_lib creating build/bdist.linux-x86_64/wheel creating build/bdist.linux-x86_64/wheel/pairtools -copying build/lib.linux-x86_64-cpython-313/pairtools/__init__.py -> build/bdist.linux-x86_64/wheel/./pairtools -copying build/lib.linux-x86_64-cpython-313/pairtools/_logging.py -> build/bdist.linux-x86_64/wheel/./pairtools -creating build/bdist.linux-x86_64/wheel/pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/stats.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/dedup_cython.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/pairsam_format.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/dedup.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse_pysam.pyx -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/pairsio.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/restrict.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/fileio.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/regions.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/dedup_cython.pyx -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse_pysam.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/filterbycov.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/regions.pyx -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/scaling.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse_pysam.pxd -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/headerops.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/select.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib -copying build/lib.linux-x86_64-cpython-313/pairtools/lib/phase.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib copying build/lib.linux-x86_64-cpython-313/pairtools/__main__.py -> build/bdist.linux-x86_64/wheel/./pairtools creating build/bdist.linux-x86_64/wheel/pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/__init__.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/stats.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/sort.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/dedup.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/restrict.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/flip.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/dedup.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/parse.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/scaling.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/markasdup.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/split.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/header.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/merge.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/filterbycov.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/scaling.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli -copying build/lib.linux-x86_64-cpython-313/pairtools/cli/parse.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/sample.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/parse2.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/__init__.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/select.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/merge.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/filterbycov.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/stats.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/restrict.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/cli/header.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli copying build/lib.linux-x86_64-cpython-313/pairtools/cli/phase.py -> build/bdist.linux-x86_64/wheel/./pairtools/cli +copying build/lib.linux-x86_64-cpython-313/pairtools/__init__.py -> build/bdist.linux-x86_64/wheel/./pairtools +copying build/lib.linux-x86_64-cpython-313/pairtools/_logging.py -> build/bdist.linux-x86_64/wheel/./pairtools +creating build/bdist.linux-x86_64/wheel/pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse_pysam.pyx -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/dedup.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/scaling.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse_pysam.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/dedup_cython.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/parse_pysam.pxd -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/fileio.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/__init__.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/pairsam_format.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/select.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/dedup_cython.pyx -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/headerops.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/regions.pyx -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/filterbycov.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/pairsio.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/stats.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/regions.cpython-313-x86_64-linux-gnu.so -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/restrict.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib +copying build/lib.linux-x86_64-cpython-313/pairtools/lib/phase.py -> build/bdist.linux-x86_64/wheel/./pairtools/lib running install_egg_info Copying pairtools.egg-info to build/bdist.linux-x86_64/wheel/./pairtools-1.1.3.egg-info running install_scripts creating build/bdist.linux-x86_64/wheel/pairtools-1.1.3.dist-info/WHEEL -creating '/build/reproducible-path/pairtools-1.1.3/.pybuild/cpython3_3.13_pairtools/.tmp-_mglvtb7/pairtools-1.1.3-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it +creating '/build/reproducible-path/pairtools-1.1.3/.pybuild/cpython3_3.13_pairtools/.tmp-vo0p0fug/pairtools-1.1.3-cp313-cp313-linux_x86_64.whl' and adding 'build/bdist.linux-x86_64/wheel' to it adding 'pairtools/__init__.py' adding 'pairtools/__main__.py' adding 'pairtools/_logging.py' @@ -1702,7 +1738,7 @@ sum(list(n_cis_pairs_above_convergence_dist.values())) / norm_factor ) -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================ 31 passed, 3 deselected, 6 warnings in 43.36s ================= +================ 31 passed, 3 deselected, 6 warnings in 39.78s ================= make[1]: Leaving directory '/build/reproducible-path/pairtools-1.1.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1739,9 +1775,9 @@ dpkg-gencontrol: warning: Depends field of package python3-pairtools-examples: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.1.3-1_amd64.deb'. -dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.1.3-1_amd64.deb'. dpkg-deb: building package 'python3-pairtools' in '../python3-pairtools_1.1.3-1_amd64.deb'. +dpkg-deb: building package 'python3-pairtools-examples' in '../python3-pairtools-examples_1.1.3-1_amd64.deb'. +dpkg-deb: building package 'python3-pairtools-dbgsym' in '../python3-pairtools-dbgsym_1.1.3-1_amd64.deb'. dpkg-genbuildinfo --build=binary -O../pairtools_1.1.3-1_amd64.buildinfo dpkg-genchanges --build=binary -O../pairtools_1.1.3-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1749,12 +1785,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/964171/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/930392 and its subdirectories -I: Current time: Sun Aug 3 06:41:33 -12 2025 -I: pbuilder-time-stamp: 1754246493 +I: removing directory /srv/workspace/pbuilder/964171 and its subdirectories +I: Current time: Sun Sep 6 15:09:36 +14 2026 +I: pbuilder-time-stamp: 1788656976